Citrus Sinensis ID: 048059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPERKGFCCLG
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEccccccHHHHHHHHHHcccccccccccccEEcEEEEEEcccEEEEEEEEccccccccccccHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcccHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MARPGNKIIQAKLVLlgdmgtgktSLALRFIkgqfydqqeptigAAFFTQILSLSEATVkfdiwdtagqeryhslapmyyRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAAnksdldsqrevpteegeqfsqenGMFYIETSAKTAQNINELFYEIAKRLArvsppkrsginlnpetperkgfcclg
Flexible Loop (DISEMBL)
MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANksdldsqrevpteegeqfsqenGMFYIETSAKTAQNINELFYEIAKRLarvsppkrsginlnpetperkgfcclg
Low Complexity Region (SEG)
MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGaaaavvvYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPERKGFCCLG
Disordered region (IsUnstruct)
*******IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALA*************************MFYIETSAKTAQNINELFYEIAKRLA**************************
Disordered Region (DISOPRED)
******K**QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA************************GFCCL*
Disordered Region (DISEMBL)
MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS***************FSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPERKGFCCLG
Disordered Region (DISPRO)
****GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVS***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPERKGFCCLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q9SN68	200	Ras-related protein RABF2	yes	no	0.989	0.98	0.613	2e-66
P31582	200	Ras-related protein RABF2	no	no	0.989	0.98	0.613	6e-66
P31583	200	Ras-related protein RHN1	N/A	no	0.989	0.98	0.603	7e-66
P29687	200	Ras-related protein Rab5	N/A	no	0.989	0.98	0.587	1e-64
P51147	216	Ras-related protein Rab-5	yes	no	0.984	0.902	0.560	7e-62
Q58DS9	216	Ras-related protein Rab-5	yes	no	0.984	0.902	0.560	1e-61
P35278	216	Ras-related protein Rab-5	yes	no	0.984	0.902	0.560	1e-61
Q5R7L7	216	Ras-related protein Rab-5	yes	no	0.984	0.902	0.560	2e-61
P51148	216	Ras-related protein Rab-5	yes	no	0.984	0.902	0.560	2e-61
Q5ZHW4	215	Ras-related protein Rab-5	yes	no	0.984	0.906	0.550	4e-61

>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1 SV=1

 Score =  251 bits (641), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 154/199 (77%), Gaps = 3/199 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  GNK I AKLVLLGD+G GK+SL LRF+K QF + QE TIGAAFF+Q L++++ATVK
Sbjct: 1   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++V+D++N  +F RA K VQELQ QGN  +VMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR- 179
           A NKSDL   R+V  E+ + ++QENG+F++ETSAKTA N+ E+FYEIA+RL RV P +  
Sbjct: 121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180

Query: 180 SGINLNPETPER--KGFCC 196
           +G+ L     +R     CC
Sbjct: 181 TGMVLPDRAMDRAVSSSCC 199

Endosomal protein that may be involved in endocytosis.
Arabidopsis thaliana (taxid: 3702)

>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1 SV=1

 Score =  249 bits (637), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 150/199 (75%), Gaps = 3/199 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  GNK I AKLVLLGD+G GK+SL LRF+K QF + QE TIGAAFF+Q L++++ATVK
Sbjct: 1   MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++V+DI+N  +F RA K VQELQ QGN  +VMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
           A NK+DL   R+V  EE E ++QEN +F++ETSAKTA N+ ++FYEIAKRL RV P +  
Sbjct: 121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENP 180

Query: 181 GINLNPETPERKGF---CC 196
              + P  P        CC
Sbjct: 181 TGMVLPNGPGATAVSSSCC 199

Involved in the trafficking of soluble cargo proteins from the prevacuolar compartment to the central vacuole.

Arabidopsis thaliana (taxid: 3702)

>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1

 Score =  249 bits (637), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 153/199 (76%), Gaps = 3/199 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA   +  + AKLVLLGDMG GK+SL +RF+KGQF + QE TIGAAFF+  L+++ ATVK
Sbjct: 1   MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++VYDI++ D+F RA K VQELQ+QGN  +VMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR- 179
           A NK+DL+ +R+V  EE   +++ENG+F++ETSAKTA N+N +FYEIAKRL R  P +  
Sbjct: 121 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNP 180

Query: 180 SGINLNPETPE--RKGFCC 196
           +G+ L     E  R   CC
Sbjct: 181 AGMVLVDRAAEGTRATSCC 199

Protein transport. Probably involved in vesicular traffic.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1

 Score =  245 bits (626), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/199 (58%), Positives = 153/199 (76%), Gaps = 3/199 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA   +  + AKLVLLGDMG GK+SL +RF+KGQF + QE TIGAAFF+  +S++ ATVK
Sbjct: 1   MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++VYDI++ ++  RA K VQELQ+QGN  +VMAL
Sbjct: 61  FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMAL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR- 179
           A NK+DL+ +R+V  EE   +++ENG+F++ETSAKTA N+N++FYEIAKRL R  P +  
Sbjct: 121 AGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNP 180

Query: 180 SGINL--NPETPERKGFCC 196
           +G+ L   P    +   CC
Sbjct: 181 AGMVLEDKPAQGSQAASCC 199

Protein transport. Probably involved in vesicular traffic.

Nicotiana tabacum (taxid: 4097)

>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1

 Score =  236 bits (602), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 149/207 (71%), Gaps = 12/207 (5%)

Query: 2   ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
           ARP     GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8   ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67

Query: 57  ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
            TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA   V+ELQRQ +  +
Sbjct: 68  TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127

Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
           V+ALA NK+DL S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L +  P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187

Query: 177 ------PKRS-GINLNPETPERKGFCC 196
                 P R+ G++L   +P  +  CC
Sbjct: 188 QNAAGAPSRNRGVDLQENSPASRSQCC 214

Protein transport. Probably involved in vesicular traffic.

Canis familiaris (taxid: 9615)

>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1

 Score =  236 bits (601), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 149/207 (71%), Gaps = 12/207 (5%)

Query: 2   ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
           ARP     GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8   ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67

Query: 57  ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
            TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA   V+ELQRQ +  +
Sbjct: 68  TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127

Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
           V+ALA NK+DL S+R V  +E + ++++N + ++ETSAKTA N+NE+F  IAK+L +  P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187

Query: 177 ------PKRS-GINLNPETPERKGFCC 196
                 P R+ G++L    P  +  CC
Sbjct: 188 QNAAGAPGRNRGVDLQENNPASRSQCC 214

Protein transport. Probably involved in vesicular traffic.

Bos taurus (taxid: 9913)

>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2

 Score =  235 bits (600), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 148/207 (71%), Gaps = 12/207 (5%)

Query: 2   ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
           ARP     GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8   ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67

Query: 57  ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
            TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA   V+ELQRQ +  +
Sbjct: 68  TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127

Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
           V+ALA NK+DL S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L +  P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187

Query: 177 ------PKRS-GINLNPETPERKGFCC 196
                 P R+ G++L    P  +  CC
Sbjct: 188 QNAAGAPGRTRGVDLQESNPASRSQCC 214

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1

 Score =  234 bits (598), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 148/207 (71%), Gaps = 12/207 (5%)

Query: 2   ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
           ARP     GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8   ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67

Query: 57  ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
            TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA   V+ELQRQ +  +
Sbjct: 68  TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127

Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
           V+ALA NK+DL S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L +  P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187

Query: 177 ------PKRS-GINLNPETPERKGFCC 196
                 P R+ G++L    P  +  CC
Sbjct: 188 QNATGAPGRNRGVDLQENNPASRSQCC 214

Protein transport. Probably involved in vesicular traffic.

Pongo abelii (taxid: 9601)

>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2

 Score =  234 bits (598), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 148/207 (71%), Gaps = 12/207 (5%)

Query: 2   ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
           ARP     GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8   ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67

Query: 57  ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
            TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA   V+ELQRQ +  +
Sbjct: 68  TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127

Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
           V+ALA NK+DL S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L +  P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187

Query: 177 ------PKRS-GINLNPETPERKGFCC 196
                 P R+ G++L    P  +  CC
Sbjct: 188 QNATGAPGRNRGVDLQENNPASRSQCC 214

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1

 Score =  234 bits (596), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/207 (55%), Positives = 148/207 (71%), Gaps = 12/207 (5%)

Query: 2   ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
           ARP      +KI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 7   ARPNGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD 66

Query: 57  ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
            TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N +TF RA   V+ELQRQ +  +
Sbjct: 67  TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSI 126

Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
           V+ALA NK+DL S+R V  EE + ++ +N + ++ETSAKTA N+N+LF  IAK+L +  P
Sbjct: 127 VIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186

Query: 177 PKRS-------GINLNPETPERKGFCC 196
              S       G++L+ +T + K  CC
Sbjct: 187 QSTSGAAGRSRGVDLHEQTQQNKSQCC 213

Protein transport. Probably involved in vesicular traffic.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
224070895	200	predicted protein [Populus trichocarpa]	1.0	0.99	0.815	3e-91
388520843	210	unknown [Lotus japonicus]	0.964	0.909	0.832	1e-87
356556138	200	PREDICTED: ras-related protein RABF2b-li	0.989	0.98	0.797	2e-87
359482942	199	PREDICTED: ras-related protein RHN1-like	0.989	0.984	0.771	2e-84
357454979	229	Ras-related protein Rab-5C [Medicago tru	0.989	0.855	0.696	2e-82
225445266	200	PREDICTED: ras-related protein RHN1 isof	1.0	0.99	0.725	8e-81
255546521	199	protein with unknown function [Ricinus c	0.989	0.984	0.717	6e-79
224142139	199	predicted protein [Populus trichocarpa]	0.989	0.984	0.702	6e-77
356527789	199	PREDICTED: ras-related protein RHN1-like	0.989	0.984	0.691	4e-76
356511351	199	PREDICTED: ras-related protein RHN1-like	0.989	0.984	0.675	4e-75

>gi|224070895|ref|XP_002303285.1| predicted protein [Populus trichocarpa] gi|222840717|gb|EEE78264.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 163/200 (81%), Positives = 177/200 (88%), Gaps = 2/200 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MARPGNKIIQAKLVLLGDMGTGKTSL LRF+KGQF+D QEPTIGAAFFTQILSL+EATVK
Sbjct: 1   MARPGNKIIQAKLVLLGDMGTGKTSLVLRFVKGQFFDHQEPTIGAAFFTQILSLTEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAV+VYDIS+MDTF RA + VQELQRQGN  +VMAL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVIVYDISSMDTFVRAKRWVQELQRQGNPKMVMAL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            ANK DLDS+REV  E+GEQFSQENGMF++ETSAKTAQNINELFYEIAKRLA+  P K +
Sbjct: 121 VANKLDLDSKREVQNEDGEQFSQENGMFFMETSAKTAQNINELFYEIAKRLAKAYPSKST 180

Query: 181 GINLNPETPERKG--FCCLG 198
           G+NLN ET  R    FCC G
Sbjct: 181 GVNLNDETESRTRNLFCCSG 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520843|gb|AFK48483.1| unknown [Lotus japonicus]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 175/191 (91%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MARPGNKIIQAKLVLLGDMGTGKTSLALRF+KGQFY  QEPT+GAAFFTQILSLSEATVK
Sbjct: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFVKGQFYPNQEPTVGAAFFTQILSLSEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDIS++DTF +A K VQELQR GNQ +VMAL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDISSIDTFVQAEKWVQELQRHGNQKLVMAL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
           AANKSDL+ +REV TEEGE+F+QENGMFY+ETSAKTA+NINELFYEIAKRLAR  P K S
Sbjct: 121 AANKSDLEPKREVETEEGEKFAQENGMFYMETSAKTAENINELFYEIAKRLARALPLKPS 180

Query: 181 GINLNPETPER 191
           GI+LN +  +R
Sbjct: 181 GISLNNDNQDR 191

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556138|ref|XP_003546384.1| PREDICTED: ras-related protein RABF2b-like [Glycine max]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/198 (79%), Positives = 173/198 (87%), Gaps = 2/198 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MARPGNKIIQAKLVLLGDMGTGKTS+ALRF+KG F+  QEPTIGAAFFTQILSLSEATVK
Sbjct: 1   MARPGNKIIQAKLVLLGDMGTGKTSIALRFVKGHFFPNQEPTIGAAFFTQILSLSEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDIS++DTF RA K VQELQ  GNQ  VMAL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDISSVDTFVRAKKWVQELQTHGNQKSVMAL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            ANKSDL+ +REV  E GEQF+QENGMFY+ETSAKTA+NINELFYEIAKRLAR  PPK +
Sbjct: 121 VANKSDLEPKREVEAEVGEQFAQENGMFYMETSAKTAENINELFYEIAKRLARALPPKPT 180

Query: 181 GINLNPETPE--RKGFCC 196
           G+NLN +  +  R  FCC
Sbjct: 181 GMNLNSDIQDRGRNYFCC 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482942|ref|XP_002284702.2| PREDICTED: ras-related protein RHN1-like [Vitis vinifera] gi|297743285|emb|CBI36152.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/197 (77%), Positives = 173/197 (87%), Gaps = 1/197 (0%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MARP NK IQAKLVL+GDMGTGKTSL LRF+KGQF++ QEPTIGAAFFTQ+LSL+EATVK
Sbjct: 1   MARPSNKNIQAKLVLVGDMGTGKTSLVLRFVKGQFFEHQEPTIGAAFFTQLLSLNEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN+DTF RA K VQELQ+QGN+ +VMAL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNVDTFVRAKKWVQELQKQGNKNLVMAL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            ANK DL+S+REV T+EGE+ S+ENGMF+IETSAKT+ NINELFYEIAKRLA   P + S
Sbjct: 121 VANKCDLESKREVNTQEGEKLSEENGMFFIETSAKTSLNINELFYEIAKRLAIAQPSQPS 180

Query: 181 GINLN-PETPERKGFCC 196
           G+NL+  E   R+ FCC
Sbjct: 181 GMNLHETENSGRRLFCC 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454979|ref|XP_003597770.1| Ras-related protein Rab-5C [Medicago truncatula] gi|355486818|gb|AES68021.1| Ras-related protein Rab-5C [Medicago truncatula]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/227 (69%), Positives = 173/227 (76%), Gaps = 31/227 (13%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           M+RPGNKIIQAKLVLLGDMGTGKTSLALRF+KGQF+  QEPTIGAAFFTQILSLSEATVK
Sbjct: 1   MSRPGNKIIQAKLVLLGDMGTGKTSLALRFVKGQFFQNQEPTIGAAFFTQILSLSEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDIS++DTF RA K VQELQR G+Q +VMAL
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDISSIDTFVRAKKWVQELQRHGSQKLVMAL 120

Query: 121 AANKSDLDSQREVPTE-----------------------------EGEQFSQENGMFYIE 151
            ANK DL+ +REV TE                             +GEQF+QENGMFY+E
Sbjct: 121 VANKCDLEPKREVETEVVFKSSSHPFPLFFSNKYVSVDVFGSDVNDGEQFAQENGMFYME 180

Query: 152 TSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETP--ERKGFCC 196
           TSAKTA+NINELFYEI +RLAR  P K  GI L  E P   RK FCC
Sbjct: 181 TSAKTAENINELFYEIGRRLARAFPSKPPGITLRNEIPGGGRKFFCC 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445266|ref|XP_002284542.1| PREDICTED: ras-related protein RHN1 isoform 1 [Vitis vinifera] gi|359484588|ref|XP_003633124.1| PREDICTED: ras-related protein RHN1 isoform 2 [Vitis vinifera] gi|297738837|emb|CBI28082.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (780), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 145/200 (72%), Positives = 170/200 (85%), Gaps = 2/200 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MAR GNK IQAKLVLLGDMGTGKTSL LRF+KGQFYD QE TIGAAFFTQ+LSL+EAT+K
Sbjct: 1   MARTGNKNIQAKLVLLGDMGTGKTSLVLRFVKGQFYDFQESTIGAAFFTQVLSLNEATIK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI++MD+F RA K VQELQRQGN  ++M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLLMIL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            ANK+DL+++REV  E+GEQ+++ENG+ + ETSAKTAQN+NELFYEIAK LA+  P +  
Sbjct: 121 VANKADLETKREVENEKGEQYAKENGLLFFETSAKTAQNVNELFYEIAKNLAKACPSRPG 180

Query: 181 GINLNPETPE--RKGFCCLG 198
           GI L+  + E  R+ FCC G
Sbjct: 181 GIKLHRRSQERGRRLFCCSG 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546521|ref|XP_002514320.1| protein with unknown function [Ricinus communis] gi|223546776|gb|EEF48274.1| protein with unknown function [Ricinus communis]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 142/198 (71%), Positives = 170/198 (85%), Gaps = 2/198 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MARP NK IQAKLVLLGDMGTGKTSL LRF+KGQF+D QE TIGAAFFTQ+LSL+EAT+K
Sbjct: 1   MARPNNKNIQAKLVLLGDMGTGKTSLVLRFVKGQFFDFQESTIGAAFFTQVLSLNEATIK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI++ D+F RA + V ELQRQGN  ++M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSTDSFERAKRWVLELQRQGNPNLIMFL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
           AANK DL  +R+V +EEGEQ+++ENG+ ++ETSAKTAQN+NELFYEIAK+LA+ +P + +
Sbjct: 121 AANKVDLGDKRKVASEEGEQYAKENGLVFLETSAKTAQNVNELFYEIAKKLAKAAPSRPT 180

Query: 181 GINLNPETPER-KG-FCC 196
           G+ L    PER +G FCC
Sbjct: 181 GMKLQNRQPERSRGMFCC 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142139|ref|XP_002324416.1| predicted protein [Populus trichocarpa] gi|222865850|gb|EEF02981.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 139/198 (70%), Positives = 165/198 (83%), Gaps = 2/198 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MAR G+  IQAKLVLLGDMGTGKTSL LRF+KGQF + QE TIGAAFFTQ+LSL+EAT+K
Sbjct: 1   MARTGSNNIQAKLVLLGDMGTGKTSLVLRFVKGQFLEFQESTIGAAFFTQVLSLNEATIK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI++MD+F RA K V ELQRQGN  ++M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVTELQRQGNPNLIMFL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
             NK DL  +R+V  EEGEQ+++ENGM ++ETSAKTAQN+NELFYEIAKRLA+ +P +  
Sbjct: 121 VGNKVDLQQKRKVGIEEGEQYAKENGMVFLETSAKTAQNVNELFYEIAKRLAKKAPSRPI 180

Query: 181 GINLN--PETPERKGFCC 196
           G+ L+  P+   R+ FCC
Sbjct: 181 GMKLHRRPQETRRRMFCC 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527789|ref|XP_003532489.1| PREDICTED: ras-related protein RHN1-like [Glycine max]

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/198 (69%), Positives = 170/198 (85%), Gaps = 2/198 (1%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MAR GNK +QAKLVLLGDMG GKTSL LRF+KG+F + Q+ TIGAAFFTQ+LSL+EATVK
Sbjct: 1   MARTGNKSLQAKLVLLGDMGAGKTSLVLRFVKGEFSEYQDSTIGAAFFTQVLSLNEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDI++MD+F RA K V+E+ RQGN   VM L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVLRQGNCQNVMFL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            ANK+DL+++R+V  EEGE++++ENG+ ++ETSAKTAQN+NELFYEIAKRLA+ +P ++S
Sbjct: 121 VANKADLEAERKVRYEEGEEYAKENGLSFLETSAKTAQNVNELFYEIAKRLAKANPSRQS 180

Query: 181 GINLNPETPE-RKG-FCC 196
           G+ L+    E R+G FCC
Sbjct: 181 GMKLHNRAGETRRGFFCC 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511351|ref|XP_003524390.1| PREDICTED: ras-related protein RHN1-like [Glycine max]

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 165/197 (83%), Gaps = 1/197 (0%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MAR  NK +QAKLVLLGDMG GKTSL LRF+KG+F + QE TIGAAFFT +LSL+EATVK
Sbjct: 1   MARTRNKSLQAKLVLLGDMGAGKTSLVLRFVKGEFSEYQESTIGAAFFTHVLSLNEATVK 60

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           FDIWDTAGQERYHSLAPMYYRGAAAA+VVYDI++MD+F RA K V+E+QRQ N  + M L
Sbjct: 61  FDIWDTAGQERYHSLAPMYYRGAAAAIVVYDITSMDSFVRAKKWVREVQRQANSSLTMFL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            ANK+DL+ +R+V  EEGE++++ENG+ ++ETSAKTAQN+NELFYEIAKRL + +P ++S
Sbjct: 121 VANKADLEDERKVRYEEGEEYAKENGLSFLETSAKTAQNVNELFYEIAKRLVKANPSRQS 180

Query: 181 GINLNPETPE-RKGFCC 196
           G+ L+    E R+GF C
Sbjct: 181 GMKLHTRPGETRRGFLC 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2123010	200	ARA7 [Arabidopsis thaliana (ta	0.989	0.98	0.587	1.7e-57
TAIR|locus:2153202	200	RHA1 "RAB homolog 1" [Arabidop	0.989	0.98	0.592	9.6e-57
ZFIN|ZDB-GENE-031118-30	221	rab5c "RAB5C, member RAS oncog	0.994	0.891	0.541	1.9e-53
UNIPROTKB|P51147	216	RAB5C "Ras-related protein Rab	0.969	0.888	0.542	3.8e-53
UNIPROTKB|Q58DS9	216	RAB5C "Ras-related protein Rab	0.969	0.888	0.542	4.9e-53
UNIPROTKB|F2Z560	216	RAB5C "Uncharacterized protein	0.969	0.888	0.542	4.9e-53
UNIPROTKB|P51148	216	RAB5C "Ras-related protein Rab	0.969	0.888	0.542	8e-53
UNIPROTKB|Q5R7L7	216	RAB5C "Ras-related protein Rab	0.969	0.888	0.542	8e-53
MGI|MGI:105306	216	Rab5c "RAB5C, member RAS oncog	0.969	0.888	0.542	8e-53
UNIPROTKB|Q5ZHW4	215	RAB5B "Ras-related protein Rab	0.964	0.888	0.535	5.6e-52

TAIR|locus:2123010 ARA7 [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 117/199 (58%), Positives = 147/199 (73%)

Query:     1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
             MA  GNK I AKLVLLGD+G GK+SL LRF+K QF + QE TIGAAFF+Q L++++ATVK
Sbjct:     1 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query:    61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
             F+IWDTAGQERYHSLAPMYYRG       +D++N  +F RA K VQELQ QGN  +VMAL
Sbjct:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120

Query:   121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR- 179
             A NKSDL   R+V  E+ + ++QENG+F++ETSAKTA N+ E+FYEIA+RL RV P +  
Sbjct:   121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180

Query:   180 SGINLNPETPER--KGFCC 196
             +G+ L     +R     CC
Sbjct:   181 TGMVLPDRAMDRAVSSSCC 199

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2153202 RHA1 "RAB homolog 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 118/199 (59%), Positives = 145/199 (72%)

Query:     1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
             MA  GNK I AKLVLLGD+G GK+SL LRF+K QF + QE TIGAAFF+Q L++++ATVK
Sbjct:     1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60

Query:    61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
             F+IWDTAGQERYHSLAPMYYRG       +DI+N  +F RA K VQELQ QGN  +VMAL
Sbjct:    61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120

Query:   121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR- 179
             A NK+DL   R+V  EE E ++QEN +F++ETSAKTA N+ ++FYEIAKRL RV P +  
Sbjct:   121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENP 180

Query:   180 SGINL--NPETPERKGFCC 196
             +G+ L   P        CC
Sbjct:   181 TGMVLPNGPGATAVSSSCC 199

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IMP

GO:0007034 "vacuolar transport" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

ZFIN|ZDB-GENE-031118-30 rab5c "RAB5C, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 112/207 (54%), Positives = 142/207 (68%)

Query:     2 ARP-GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
             A P GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ L L + TVK
Sbjct:    13 AAPVGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCLDDTTVK 72

Query:    61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
             F+IWDTAGQERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+AL
Sbjct:    73 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQRQASPNIVIAL 132

Query:   121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPP--- 177
             A NK+DL ++R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L +  P    
Sbjct:   133 AGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKSEPQGGA 192

Query:   178 -----KRSGINLNPETPE-RKGFCCLG 198
                   R G++L    P+ R G CC G
Sbjct:   193 GSGGRARGGVDLQETAPQGRSGQCCGG 219

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=IDA

UNIPROTKB|P51147 RAB5C "Ras-related protein Rab-5C" [Canis lupus familiaris (taxid:9615)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 108/199 (54%), Positives = 140/199 (70%)

Query:     5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
             GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct:    16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75

Query:    65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
             DTAGQERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+ALA NK
Sbjct:    76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135

Query:   125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP------PK 178
             +DL S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L +  P      P 
Sbjct:   136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPS 195

Query:   179 RS-GINLNPETPERKGFCC 196
             R+ G++L   +P  +  CC
Sbjct:   196 RNRGVDLQENSPASRSQCC 214

GO:0019003 "GDP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q58DS9 RAB5C "Ras-related protein Rab-5C" [Bos taurus (taxid:9913)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 108/199 (54%), Positives = 140/199 (70%)

Query:     5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
             GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct:    16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75

Query:    65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
             DTAGQERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+ALA NK
Sbjct:    76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135

Query:   125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP------PK 178
             +DL S+R V  +E + ++++N + ++ETSAKTA N+NE+F  IAK+L +  P      P 
Sbjct:   136 ADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPG 195

Query:   179 RS-GINLNPETPERKGFCC 196
             R+ G++L    P  +  CC
Sbjct:   196 RNRGVDLQENNPASRSQCC 214

GO:0019003 "GDP binding" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F2Z560 RAB5C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 108/199 (54%), Positives = 140/199 (70%)

Query:     5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
             GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct:    16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75

Query:    65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
             DTAGQERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+ALA NK
Sbjct:    76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135

Query:   125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP------PK 178
             +DL S+R V  +E + ++++N + ++ETSAKTA N+NE+F  IAK+L +  P      P 
Sbjct:   136 ADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPG 195

Query:   179 RS-GINLNPETPERKGFCC 196
             R+ G++L    P  +  CC
Sbjct:   196 RNRGVDLQENNPASRSQCC 214

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P51148 RAB5C "Ras-related protein Rab-5C" [Homo sapiens (taxid:9606)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 108/199 (54%), Positives = 139/199 (69%)

Query:     5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
             GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct:    16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75

Query:    65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
             DTAGQERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+ALA NK
Sbjct:    76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135

Query:   125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP------PK 178
             +DL S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L +  P      P 
Sbjct:   136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195

Query:   179 RS-GINLNPETPERKGFCC 196
             R+ G++L    P  +  CC
Sbjct:   196 RNRGVDLQENNPASRSQCC 214

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0019003 "GDP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|Q5R7L7 RAB5C "Ras-related protein Rab-5C" [Pongo abelii (taxid:9601)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 108/199 (54%), Positives = 139/199 (69%)

Query:     5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
             GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct:    16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75

Query:    65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
             DTAGQERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+ALA NK
Sbjct:    76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135

Query:   125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP------PK 178
             +DL S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L +  P      P 
Sbjct:   136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195

Query:   179 RS-GINLNPETPERKGFCC 196
             R+ G++L    P  +  CC
Sbjct:   196 RNRGVDLQENNPASRSQCC 214

GO:0019003 "GDP binding" evidence=ISS

MGI|MGI:105306 Rab5c "RAB5C, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 108/199 (54%), Positives = 139/199 (69%)

Query:     5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
             GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct:    16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75

Query:    65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
             DTAGQERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+ALA NK
Sbjct:    76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135

Query:   125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP------PK 178
             +DL S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L +  P      P 
Sbjct:   136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPG 195

Query:   179 RS-GINLNPETPERKGFCC 196
             R+ G++L    P  +  CC
Sbjct:   196 RTRGVDLQESNPASRSQCC 214

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005811 "lipid particle" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0006810 "transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0030100 "regulation of endocytosis" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

UNIPROTKB|Q5ZHW4 RAB5B "Ras-related protein Rab-5B" [Gallus gallus (taxid:9031)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 106/198 (53%), Positives = 139/198 (70%)

Query:     6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
             +KI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IWD
Sbjct:    16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 75

Query:    66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125
             TAGQERYHSLAPMYYRG       YDI+N +TF RA   V+ELQRQ +  +V+ALA NK+
Sbjct:    76 TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKA 135

Query:   126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSG---- 181
             DL S+R V  EE + ++ +N + ++ETSAKTA N+N+LF  IAK+L +  P   SG    
Sbjct:   136 DLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAGR 195

Query:   182 ---INLNPETPERKGFCC 196
                ++L+ +T + K  CC
Sbjct:   196 SRGVDLHEQTQQNKSQCC 213

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51148	RAB5C_HUMAN	No assigned EC number	0.5603	0.9848	0.9027	yes	no
P61271	RAB5A_MACFA	No assigned EC number	0.5326	0.9696	0.8930	N/A	no
Q58DS9	RAB5C_BOVIN	No assigned EC number	0.5603	0.9848	0.9027	yes	no
P51147	RAB5C_CANFA	No assigned EC number	0.5603	0.9848	0.9027	yes	no
P36586	YPT5_SCHPO	No assigned EC number	0.5497	0.8484	0.7962	yes	no
P35278	RAB5C_MOUSE	No assigned EC number	0.5603	0.9848	0.9027	yes	no
Q9SN68	RAF2B_ARATH	No assigned EC number	0.6130	0.9898	0.98	yes	no
P36017	VPS21_YEAST	No assigned EC number	0.4521	0.9090	0.8571	yes	no
Q86JP3	RAB5A_DICDI	No assigned EC number	0.6193	0.8838	0.8706	yes	no
Q5ZHW4	RAB5B_CHICK	No assigned EC number	0.5507	0.9848	0.9069	yes	no
Q5R7L7	RAB5C_PONAB	No assigned EC number	0.5603	0.9848	0.9027	yes	no
P31583	RHN1_NICPL	No assigned EC number	0.6030	0.9898	0.98	N/A	no
P29687	RAB5_TOBAC	No assigned EC number	0.5879	0.9898	0.98	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0107 hypothetical protein (200 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-101
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-79
pfam00071	162	pfam00071, Ras, Ras family	3e-79
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	6e-75
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-64
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-63
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-60
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-52
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-51
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	6e-51
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	7e-51
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-50
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	7e-50
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-49
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-47
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	3e-45
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	5e-45
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-45
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	7e-44
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-43
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-42
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	8e-42
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-41
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-41
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-38
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-37
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	5e-37
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-34
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-34
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-34
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	7e-34
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-33
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-32
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-32
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-32
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-32
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	4e-31
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-30
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-30
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-30
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-29
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	9e-29
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-28
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-28
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-28
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	4e-28
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	6e-28
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-27
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-27
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-26
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-26
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-26
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-25
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-25
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-25
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-25
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-24
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-24
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-23
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-23
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	9e-23
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-22
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-21
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	4e-21
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	5e-21
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	1e-20
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-20
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-20
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-19
pfam08477	116	pfam08477, Miro, Miro-like protein	9e-19
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-17
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	8e-17
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-16
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-16
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-16
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-15
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	4e-15
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-14
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-11
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	3e-11
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	5e-11
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	8e-11
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-10
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	6e-10
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	7e-10
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-09
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-09
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-09
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	8e-09
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	8e-08
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	4e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-07
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	5e-07
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	7e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-06
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	8e-06
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	3e-05
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	4e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	5e-05
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	9e-05
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	9e-05
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	2e-04
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	4e-04
cd01898	170	cd01898, Obg, Obg GTPase	6e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	7e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.002
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	0.002

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  290 bits (744), Expect = e-101
 Identities = 98/162 (60%), Positives = 131/162 (80%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           Q KLVLLGD   GK+S+ LRF+K +F + QE TIGAAF TQ ++L + TVKF+IWDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129
           ERY SLAPMYYRGAAAA+VVYDI++ ++F +A   V+ELQ  G   +V+ALA NK+DL+S
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +R+V TEE ++++ ENG+ ++ETSAKT +N+NELF EIA++L
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  233 bits (596), Expect = 3e-79
 Identities = 71/158 (44%), Positives = 107/158 (67%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GKTSL LRF+  +F +  + TIG  F ++ + +    VK  IWDTAGQER
Sbjct: 2   KIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGA  A++VYD++N ++F   +K + EL+      + + L  NKSDL+ +R
Sbjct: 62  FRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDER 121

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
           +V TEE +QF++ENG+ + ETSAKT +N++E F  +A+
Sbjct: 122 QVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  233 bits (596), Expect = 3e-79
 Identities = 75/160 (46%), Positives = 111/160 (69%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLVL+GD G GK+SL +RF + +F ++  PTIG  F+T+ + +   TVK  IWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + +L P+YYRGA   ++VYDI++ D+F    K ++E+ R  ++ V + L  NK DL+ QR
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V TEEGE  ++E G+ ++ETSAKT +N+ E F E+A+ +
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  222 bits (568), Expect = 6e-75
 Identities = 73/160 (45%), Positives = 106/160 (66%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+SL  RF  G+F +Q + TIG  F T+ + +    VK  IWDTAGQER
Sbjct: 2   KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGA  A++VYDI+N ++F      ++EL+   +  VV+ L  NKSDL+ QR
Sbjct: 62  FRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQR 121

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EE E F++E+G+ + ETSAKT  N+ E F E+A+ +
Sbjct: 122 QVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  196 bits (500), Expect = 1e-64
 Identities = 71/162 (43%), Positives = 109/162 (67%), Gaps = 2/162 (1%)

Query: 11  AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
            KLV LGD   GKTS+  RF+   F +Q + TIG  F ++ + + + TV+  +WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQ-RQGNQIVVMALAANKSDLDS 129
           R+ SL P Y R ++ AVVVYDI+N  +F+  +K + +++  +GN ++++ L  NK+DL  
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIV-LVGNKTDLSD 119

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +R+V TEEGE+ ++EN   +IETSAK   N+ +LF +IA+ L
Sbjct: 120 KRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  193 bits (493), Expect = 1e-63
 Identities = 71/162 (43%), Positives = 109/162 (67%), Gaps = 2/162 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VLLG+   GKTSL LR+++ +F ++ E T  A+FF + +++    +   IWDTAGQER
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           YH+L P+YYR A  A++VYDI++ D+F +  K ++EL++ +GN I  + +  NK DL+ Q
Sbjct: 62  YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNI-SLVIVGNKIDLERQ 120

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
           R V   E E++++  G  + ETSAKT + I ELF  +AKR+ 
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  186 bits (474), Expect = 1e-60
 Identities = 67/160 (41%), Positives = 100/160 (62%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F    + TIG  F T+ + +   T+K  IWDTAGQER
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA  A++VYDI+   TF    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 124

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            VPTEE + F+++NG+ +IETSA    N+ E F ++   +
Sbjct: 125 AVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  164 bits (417), Expect = 4e-52
 Identities = 65/161 (40%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+SL LRF    F +    TIG  F  + +++    VK  IWDTAGQER
Sbjct: 2   KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + +L   YYRGA   ++VYD++  DTF+  +  + EL     N   V  L  NK D    
Sbjct: 62  FRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDK-EN 120

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           REV  EEG++F++++ M +IETSAKT   + + F E+ +++
Sbjct: 121 REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  163 bits (414), Expect = 1e-51
 Identities = 60/161 (37%), Positives = 99/161 (61%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L +RF+ G+F ++ +PTI  ++  QI  +   T   DI DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQI-VVDGETYTLDILDTAGQEE 59

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           + ++   Y R     ++VY I++ ++F     + +++ R    + V + L  NK DL+++
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R+V TEEGE  ++E G  ++ETSAKT  NI+ELF  + + +
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  161 bits (409), Expect = 6e-51
 Identities = 67/158 (42%), Positives = 102/158 (64%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GD G GK+ L L+F   +F    + TIG  F  +++++    +K  IWDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGAA A++VYDI+  +TFN     +++ ++  N  + + L  NK DL+S+R
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR 125

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
           EV  EEGE F++E+G+ ++ETSAKTA N+ E F   AK
Sbjct: 126 EVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 163

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  161 bits (409), Expect = 7e-51
 Identities = 63/160 (39%), Positives = 97/160 (60%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   TVK  IWDTAGQER
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA   ++VYD+++ ++FN   + +QE+ R  ++ V   L  NK DL  ++
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKK 123

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V   E ++F+ E G+ ++ETSAK A N+ E F  +A+ +
Sbjct: 124 VVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  158 bits (402), Expect = 6e-50
 Identities = 66/160 (41%), Positives = 104/160 (65%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GDMG GK+ L  +F + +F      TIG  F T+I+ ++   +K  IWDTAGQER
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGAA A++VYDI+   T+N  +  + + +   N   V+ L  NK+DL++QR
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EE +QF+ ENG+ ++E SAKT +N+ + F E AK++
Sbjct: 124 DVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  158 bits (403), Expect = 7e-50
 Identities = 61/160 (38%), Positives = 92/160 (57%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF +  F      TIG  F  + + L    +K  IWDTAGQER
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA   ++VYDI++  +F      ++ +    ++ V   L  NK D++ +R
Sbjct: 65  FRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEKR 124

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V  EEGE  ++E G+ ++ETSAK   N+ E F  +AK +
Sbjct: 125 VVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  156 bits (397), Expect = 3e-49
 Identities = 63/160 (39%), Positives = 102/160 (63%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++G  GTGK+ L  +FI+ +F      TIG  F ++++++   +VK  IWDTAGQER
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGAA A++VYDI++ ++FN     + + +   +  +V+ L  NK DL+  R
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDDR 121

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV   E  +F+QENG+ ++ETSA T +N+ E F + A+ +
Sbjct: 122 EVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  153 bits (387), Expect = 2e-47
 Identities = 65/160 (40%), Positives = 97/160 (60%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+G+ G GKT L  RF +G F   Q  TIG  F  + + +    +K  IWDTAGQER
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYR A A ++ YDI+  ++F    + ++E+++  N  V+  L  NK DL  +R
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR 128

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV  +  E+FS    M+Y+ETSAK + N+ +LF ++A RL
Sbjct: 129 EVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  148 bits (375), Expect = 3e-45
 Identities = 66/160 (41%), Positives = 103/160 (64%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GD G GK+ L L+F   +F    + TIG  F  +++++    +K  IWDTAGQE 
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGAA A++VYDI+  +TFN     +++ ++  N  + + L  NK DL  +R
Sbjct: 68  FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V TEEGEQF++E+G+ ++E SAKTAQN+ E F + A ++
Sbjct: 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  146 bits (370), Expect = 5e-45
 Identities = 63/161 (39%), Positives = 92/161 (57%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD   GKT +  RF  G F ++Q  TIG  F  + L +    VK  IWDTAGQER
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYR A  A++ YDI+   +F      ++E+++ G   VV+ L  NK DL+ QR
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR 124

Query: 132 EVPTEEGEQFSQENGMFY-IETSAKTAQNINELFYEIAKRL 171
           EV  EE    ++  G+   +ETSAK + N+ E F  +A  L
Sbjct: 125 EVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  147 bits (372), Expect = 9e-45
 Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 25/211 (11%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT-VKFDIWDTAG 68
           Q +L+++GD   GK+SL  RF +G+F +  +PT+G  FF++++ +     +K  +WDTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANKSD 126
           QER+ S+   YYR +   ++V+DI+N ++F   +  ++E +   Q ++ V   L  +K D
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV-FILVGHKCD 120

Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA-RVSPPK------- 178
           L+SQR+V  EE E+ +++ GM YIETSA+T  N+ E F  + + +  R+   +       
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDGW 180

Query: 179 ---RSGINLN----------PETPERKGFCC 196
              +SG                    K  CC
Sbjct: 181 DGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  143 bits (363), Expect = 7e-44
 Identities = 64/166 (38%), Positives = 100/166 (60%), Gaps = 11/166 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+++LGD G GKTSL  +++  +F +Q + TIGA F T+ +++ +  V   IWDTAGQER
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ-------IVVMALAANK 124
           + SL   +YRGA   V+VYD++N  +F   +    E   Q +         VV+    NK
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVL---GNK 118

Query: 125 SDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAK 169
            DL+ +R+V T++ +Q+ +  G + Y ETSAK A N+++ F  IA+
Sbjct: 119 IDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  143 bits (362), Expect = 2e-43
 Identities = 70/194 (36%), Positives = 105/194 (54%), Gaps = 9/194 (4%)

Query: 11  AKLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
            K+V+LG    GKTSL  R++  +F     + TIGAAF  + + + E  V   IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL-- 127
           ERY +++ +YYRGA AA+V YD+++  +F RA   V+ELQ       +  L   KSDL  
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIY-LCGTKSDLIE 119

Query: 128 --DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVS---PPKRSGI 182
              S R+V   + + F+ E    + ETS+KT QN++ELF ++A+     +        G+
Sbjct: 120 QDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTEKGV 179

Query: 183 NLNPETPERKGFCC 196
           +L  +       CC
Sbjct: 180 DLGQKKNSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  141 bits (358), Expect = 1e-42
 Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 16/201 (7%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK+++  RF + +F  + + TIG  F T+ L +   TVK  IWDTAGQER
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA  A++VYDI+   TF+   + ++EL+   +  +V+ +A NKSDL+  R
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR 133

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELF-------YEIAKRLARVS--------- 175
            V  E+G+  +++ G+ ++ETSA  A N+ + F       Y I  + A  +         
Sbjct: 134 SVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANSGL 193

Query: 176 PPKRSGINLNPETPERKGFCC 196
           P + + IN+   +   K  CC
Sbjct: 194 PGQGTTINVADTSGNNKRGCC 214

Length = 216

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  138 bits (350), Expect = 8e-42
 Identities = 54/163 (33%), Positives = 97/163 (59%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F D+ +PTI    + + + +       DI DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++   Y R     ++VY I++  +F    K  +++ R +    V + L  NK DL+++
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLENE 122

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V TEEG++ +++ G  ++ETSAK   N++E FY++ + + +
Sbjct: 123 RVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRK 165

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  137 bits (348), Expect = 1e-41
 Identities = 56/157 (35%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L ++FI+G F D  +PTI    + + + +       DI DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++   Y R     ++VY I++  +F    K  +++ R +    V + L  NK DL+S+
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
           R V TEEG++ +++ G  ++ETSAK   N++E FY++
Sbjct: 121 RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  137 bits (348), Expect = 3e-41
 Identities = 65/200 (32%), Positives = 103/200 (51%), Gaps = 16/200 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT-VKFDIWDTAGQE 70
           K++++GD+G GKTS+  R++ G F    + TIG  F  +++     T V+  +WD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ----GNQIVVMALAANKSD 126
           R+  +  +YY+GA  A++V+D++   TF    K   +L  +      + +   L ANK D
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKCD 121

Query: 127 LDSQRE-VPTEEGEQFSQENGMF--YIETSAKTAQNINELFYEIAKRLARVS-------P 176
           L  +R     E+ +QF +ENG F  + ETSAK   NI E    + K + +         P
Sbjct: 122 LKKERLAKDPEQMDQFCKENG-FIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEP 180

Query: 177 PKRSGINLNPETPERKGFCC 196
            + + I+L  ET   K   C
Sbjct: 181 DEDNVIDLKQETTTSKSKSC 200

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  130 bits (328), Expect = 2e-38
 Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
           K++L+GD G GKT L +RF  G F       T+G  F  +++++    VK  IWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           R+ S+   YYR A A +++YD++N  +F+     + E+       VV+ L  NK+D+  +
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSGE 121

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R V  E+GE+ ++E G+ ++ETSAKT  N+   F  +AK L
Sbjct: 122 RVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  127 bits (321), Expect = 1e-37
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 5/165 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F ++ E TIG  F  + + +    +K  +WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 72  Y-HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDS 129
           +  S+   YYR   A V VYD++NM +F+     ++E ++      V   L  NK DL  
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123

Query: 130 QREVPTEEGEQFSQENGMFYIETSAK---TAQNINELFYEIAKRL 171
           Q +VPT+  ++F+  + M   ETSAK      ++  +F  +A +L
Sbjct: 124 QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  127 bits (320), Expect = 5e-37
 Identities = 73/196 (37%), Positives = 111/196 (56%), Gaps = 12/196 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+SL + FI     D   PTIG  F  + L++    +K  IWDTAGQER
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSVEDLA-PTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQ-RQGNQIVVMALAANKSDLDS 129
           + +L   YYR A   ++VYD++  +TF N ++   +E++    NQ  V  L  NK D +S
Sbjct: 75  FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV--------SPPKRSG 181
           +R+V  EEG   ++E+G  ++E SAKT +N+ + F E+A ++  V        +  KR+ 
Sbjct: 135 ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAVKRNI 194

Query: 182 INLNPET-PERKGFCC 196
           +   PE  P   G CC
Sbjct: 195 LKQKPEHQPPPNGGCC 210

Length = 211

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  120 bits (303), Expect = 1e-34
 Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 9/193 (4%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+++GD G GK+SL LRF    F      TIG  F  + + ++   VK  IWDTAGQER
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG    +VVYD++N ++F    + +QE++ Q    V   L  NK+D   ++
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE-QNCDDVCKVLVGNKNDDPERK 126

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV---SPPKRS-----GIN 183
            V TE+  +F+ + G+   ETSAK   N+ E+F  I + + R    +  K+       + 
Sbjct: 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVV 186

Query: 184 LNPETPERKGFCC 196
             P+  +RK  CC
Sbjct: 187 KLPKNSKRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  120 bits (301), Expect = 2e-34
 Identities = 61/137 (44%), Positives = 85/137 (62%)

Query: 35  FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN 94
           F +  + TIG  F ++ L L E  V+  +WDTAGQER+ SL P Y R +AAA+VVYDI+N
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 95  MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA 154
             +F    K +Q++  +  + V++AL  NK+DL   R+V  EEG Q +QE    + ETSA
Sbjct: 65  RQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSA 124

Query: 155 KTAQNINELFYEIAKRL 171
           K   NI  LF +IA +L
Sbjct: 125 KAGHNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  120 bits (303), Expect = 2e-34
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 18/181 (9%)

Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
            + K+V+LGD G GKT+L  R +  +F +   PTIG     + +      +K  +WDTAG
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y SL P YYRGA   ++VYD +  + +     + ++EL+      V + L  NK DL
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 128 DSQ------------REVPTEEGEQFSQENGMF---YIETSAK--TAQNINELFYEIAKR 170
             +            REV        +    +     +ETSAK  T  N+NELF E+ ++
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 171 L 171
           L
Sbjct: 184 L 184

Length = 219

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  118 bits (296), Expect = 7e-34
 Identities = 59/162 (36%), Positives = 91/162 (56%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +L+L+GD G GKT L  RF   +F+     TIG  F  + + +    V+  IWDTAGQER
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYR A    +VYDIS+  ++    K V ++     + V   L  NK+D + +R
Sbjct: 62  YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +V  E+G + ++E GM + ETSA T +NI E F  + + + +
Sbjct: 122 QVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELVLQ 163

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  116 bits (293), Expect = 2e-33
 Identities = 51/159 (32%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++FI+  F    +PTI  ++ T+   +     + DI DTAGQE 
Sbjct: 4   KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQEE 62

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKL-VQELQRQGNQIVVMALAANKSDLDSQ 130
           + ++   Y R     ++V+ +++  +F   +K   Q L+ +      M L  NK+DL+ Q
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
           R+V  EEG++ +++  + YIETSAK   N+++ F+++ +
Sbjct: 123 RQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  115 bits (289), Expect = 1e-32
 Identities = 64/187 (34%), Positives = 105/187 (56%), Gaps = 7/187 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++FI+  F D+ +PTI  ++  Q   + E T   DI DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQC-VIDEETCLLDILDTAGQEE 65

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y R     + VY I++  +F       +++ R +    V M L  NK DLDS+
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE 125

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPE 190
           R+V T EG++ ++  G+ ++ETSAK   N++E FYE+ + +      K    ++  +  +
Sbjct: 126 RQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIR-----KYLKEDMPSQKQK 180

Query: 191 RKGFCCL 197
           +KG  CL
Sbjct: 181 KKGGLCL 187

Length = 189

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  115 bits (289), Expect = 2e-32
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LGD G GKT+L ++     F +  +PTI  ++  Q++ +       ++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR---QGNQIVVMALAANKSDLD 128
           Y +L   + R     ++VY I++  TF R  +  +++QR   +    V + +  NK D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            +REV TEEG   ++  G  +IE SAKT  N+   FY + + L
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  114 bits (286), Expect = 2e-32
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 3/155 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSLSEATVKFDIWDTAGQ 69
           K++++G+   GK+S+  RF+KG F    + TIG  F  +   L  S+  V+  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129
           E + ++   YYRGA A ++V+  ++ ++F       ++++ +   I  M L   K DL  
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDI-PMVLVQTKIDLLD 120

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
           Q  +  EE E  ++   +    TS K   N+ ELF
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  114 bits (286), Expect = 2e-32
 Identities = 58/161 (36%), Positives = 97/161 (60%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V+LG  G GK++L ++F+ G F ++ +PTI   +  +I   S  +V  +I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSV-LEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + S+  +Y +     +VVY + N  TF     +  ++ R +G + V + L  NK DL+S+
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           REV + EG   ++E G  ++ETSAK+   +NELF EI +++
Sbjct: 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  110 bits (277), Expect = 4e-31
 Identities = 50/153 (32%), Positives = 82/153 (53%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+++G+   GKTS   R+    F      T+G  F  + +  ++  +K  IWDTAGQER
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA   +++YDI+N ++FN       +++        + L  NK D++ +R
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
            V  E G Q + + G  + E SAK   N+ ++F
Sbjct: 123 VVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  109 bits (274), Expect = 1e-30
 Identities = 55/159 (34%), Positives = 92/159 (57%), Gaps = 3/159 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++ +   T   DI DTAGQE 
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y R     + V+ I++  +F   +   ++++R + +  V M L  NK DL + 
Sbjct: 62  YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA- 120

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
           R V T +G+  ++  G+ YIETSAKT Q + E FY + +
Sbjct: 121 RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  110 bits (276), Expect = 2e-30
 Identities = 55/166 (33%), Positives = 98/166 (59%), Gaps = 1/166 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +++++G  G GKTSL  RF    F +  + T+G  F  + + L    ++  IWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           ++S+   YYR A   ++VYDI+  +TF+   K ++ + +  ++   + L  NK D ++ R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 132 EVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
           E+  ++GE+F+Q+  GM + E SAK   N++E+F ++   + +  P
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMP 167

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  108 bits (272), Expect = 4e-30
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 15/171 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V++GD   GKT L + +   +F  +  PT+   +   +    +  V   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGK-QVNLGLWDTAGQEE 60

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDL--- 127
           Y  L P+ Y      ++ + + +  +F     K   E++     + ++ L   K DL   
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPII-LVGTKIDLRDD 119

Query: 128 --------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAK 169
                     Q+ +  EEGE+ ++E G + Y+E SA T + + E+F E  +
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  106 bits (266), Expect = 2e-29
 Identities = 50/163 (30%), Positives = 100/163 (61%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  EPT  A  + + + L    V+ +I DTAGQE 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y+R     ++V+ I++M++F    +  +++ R + +  V + L  NK DL+ +
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDK 120

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R+V  EE    +++ G+ Y+ETSAKT  N++++F+++ + + +
Sbjct: 121 RQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  104 bits (262), Expect = 9e-29
 Identities = 55/163 (33%), Positives = 99/163 (60%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F ++ +PTI  ++  Q+  +       +I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++  +Y +     V+VY I+   TFN    L +++ R +  + V M L  NK DL+ +
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V  E+G+  +++ G  ++ETSAK   N+NE+FY++ +++ R
Sbjct: 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQINR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  104 bits (261), Expect = 2e-28
 Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 6/165 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V+LG  G GK+++ ++FI   F D  +PTI  A+ TQ    +E  +  DI DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPAL-LDILDTAGQAE 62

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRAN---KLVQELQRQGNQIVVMALAANKSDLD 128
           + ++   Y R     ++ Y +++  +F  A+   +L+  ++   +  +V  L  NK DL+
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLV--LVGNKVDLE 120

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
            QR+V TEEG   ++E    + ETSA     I++ F+ + + + R
Sbjct: 121 QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRR 165

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score =  105 bits (263), Expect = 2e-28
 Identities = 69/224 (30%), Positives = 102/224 (45%), Gaps = 44/224 (19%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VLLGDM  GKTSL  R+++ +F      T+G AF+ +            IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL---- 127
           +H L  MY RGAAA ++ YD+SN+ +          L    N+  + A+  NK DL    
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 128 ---------------DSQREVPTEEGEQFSQENGMF--------------YIETSAKTAQ 158
                          + QR+V  E+ + F +    +                ETSAKT  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 159 NINELF-----YEIAKRLARVSPPKRSGINLNPETPER-KGFCC 196
           N++ELF       +   LA+ +   R+   +N   P+R K  CC
Sbjct: 177 NVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  103 bits (258), Expect = 4e-28
 Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 7/159 (4%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++ +G+ G GK+ +  R+ +G+F  +  PTIG  +  + +S+    V+ + +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANK----LVQELQRQGN--QIVVMALAANKS 125
           Y  +   +Y+     ++VYD+++  +F   +     + QE    GN   IVV  + ANK 
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVV-VVCANKI 120

Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
           DL   R V  +EG  +++  G  Y ETSA T + +NE+F
Sbjct: 121 DLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  103 bits (258), Expect = 4e-28
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAA-----FFTQILSLSEATVKFDIWDT 66
           KLVL+GD GTGKT+   R + G+F  +   T+G       F T         ++F++WDT
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNR-----GKIRFNVWDT 56

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSD 126
           AGQE++  L   YY     A++++D+++  T+       ++L R    I  + L  NK D
Sbjct: 57  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI-PIVLCGNKVD 115

Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
           +   R+V   +   F ++  + Y E SAK+  N  + F  +A++L 
Sbjct: 116 I-KDRKVK-PKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLL 159

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  103 bits (257), Expect = 6e-28
 Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 12/167 (7%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLGD G GK+SL  R++  +F  Q   TIG  F  + L +    V   IWDTAGQER
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQEL-------QRQGNQIVVMALAANK 124
           + SL   +YRG+   ++ + + +  +F   +   +E        + +    V++    NK
Sbjct: 67  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL---GNK 123

Query: 125 SDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
            D+  +R+V TEE + + ++NG + Y ETSAK A N+   F E  +R
Sbjct: 124 IDI-PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  102 bits (257), Expect = 1e-27
 Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 4/167 (2%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQE 70
           K+V+LGD  +GKTSL  RF +  F    + TIG  FF++ ++L     V   +WD  GQ+
Sbjct: 2   KIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQ 61

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRAN---KLVQELQRQGNQIVVMALAANKSDL 127
               +   Y  GA A  +VYDI+N  +F        +V+++  +      M L  NK+DL
Sbjct: 62  IGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTDL 121

Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV 174
           +  R+V  E+  +F+QEN M  I  SAKT   +   F  IA  L  V
Sbjct: 122 EHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGV 168

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  101 bits (253), Expect = 2e-27
 Identities = 54/162 (33%), Positives = 99/162 (61%), Gaps = 3/162 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F D+ +PTI  ++  QI    +  +  +I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCM-LEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++  +Y +      +VY I+   +FN    L +++ R +  + V M L  NK DL+ +
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121

Query: 131 REVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRL 171
           R V  EEG+  +++ G   ++ETSAK+  N++E+FY++ +++
Sbjct: 122 RVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  100 bits (250), Expect = 1e-26
 Identities = 56/189 (29%), Positives = 98/189 (51%), Gaps = 11/189 (5%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           Q K+ +LG    GK+SL ++F++G F +   PTI   F ++I++        +I DTAGQ
Sbjct: 1   QRKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQ 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLD 128
           + Y  L   Y  G    ++VY +++  +F     +  ++    G + V + L  NKSDL 
Sbjct: 60  DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPET 188
            +R+V  EEG++ ++  G  ++E+SAK  +N+ E F  + + + +V          NP  
Sbjct: 120 MERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVE---------NPLP 170

Query: 189 PERKGFCCL 197
           P +K  C +
Sbjct: 171 PGQKSKCSV 179

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 98.8 bits (246), Expect = 2e-26
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 5/161 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLGD   GK+ L  RF+   +  QQ  T     +         T+  D WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YY  A A ++V+D++   T+   +K  +EL R+    +   + ANK DLD   
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEEL-REYRPEIPCIVVANKIDLDPS- 119

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
              T++   F++++ +     SA    N+ +LF + A +LA
Sbjct: 120 --VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD-AIKLA 157

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 99.3 bits (248), Expect = 3e-26
 Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 19/172 (11%)

Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           ++ K+V++GD G GKT L + + +G F ++  PT+   + T +   +   ++  +WDTAG
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAG 61

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQR--QGNQIVVMALAANKS 125
           QE Y  L P+ Y      ++ Y + N  +  N  +K   E+     G  IV++ L   K+
Sbjct: 62  QEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGL---KT 118

Query: 126 DLDSQRE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELF 164
           DL   +             V  E+GE  ++  G   YIE SAK  +N++E+F
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 95.5 bits (238), Expect = 3e-25
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 11  AKLVLLGDMGTGKTSLALRFIKGQ-FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
            K+V++GD   GK++L  R +  +    + +P     + T ++     T KF++ DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISN--MDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
           E Y ++  +YYR   +++ V+DI    +D      K  +E+       V + L  NK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
               ++ T     F++ NG   I  SA+T +NI+  F  +
Sbjct: 122 -RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 95.2 bits (237), Expect = 5e-25
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 14  VLLGDMGTGKTSLALRFIKGQFY---DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
           V++G  G GK+SL    + G+     D    T     +     L +  VK  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYV--KELDKGKVKLVLVDTPGLD 58

Query: 71  RYH-----SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125
            +       LA +  RGA   ++V D ++ ++   A  L+    R+    ++  L  NK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPII--LVGNKI 116

Query: 126 DLDSQREV-PTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
           DL  +REV      E+ ++  G+   E SAKT + ++ELF ++ +
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 95.4 bits (238), Expect = 5e-25
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 17/174 (9%)

Query: 13  LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72
           LV++GD   GKT L + +    F +   PT+   +   +    +  V+  +WDTAGQE Y
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGK-PVELGLWDTAGQEDY 59

Query: 73  HSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL---- 127
             L P+ Y      ++ + + +  +F N   K   E+ +     V + L   K DL    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEV-KHFCPNVPIILVGTKLDLRNDK 118

Query: 128 --------DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
                     Q  V  E+G+  ++  G   Y+E SA T + + E+F E A R A
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF-EEAIRAA 171

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 95.3 bits (237), Expect = 7e-25
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT----------VKF 61
           KL+ LGD G GKT+   R+   +F  +   T+G  F  + +  +             V  
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMAL 120
            +WDTAGQER+ SL   ++R A   ++++D+++  +F N  N + Q       +   + L
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE 162
             NK+DL  QREV   +  + + + G+ Y ETSA T QN+ +
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 94.3 bits (235), Expect = 1e-24
 Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 8/168 (4%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ +LG  G GK++L +RF+  +F  + EP + + +  Q +++    V  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQ-VTIDGEQVSLEIQDTPGQQQ 59

Query: 72  YHSLAPM--YYRGAAAAVVVYDISNMDTFNRANKLVQ---ELQRQGNQIVVMALAANKSD 126
                 +    R A   V+VY I++  +F+  ++L+Q   E++++  +I V+ L  NK+D
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVI-LVGNKAD 118

Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSA-KTAQNINELFYEIAKRLAR 173
           L   R+V TEEG++ + E G  + E SA +    +  +F+E+ + + R
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 94.4 bits (235), Expect = 3e-24
 Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 16/180 (8%)

Query: 1   MARPGNKIIQA---KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAA-----FFTQIL 52
           MA P  + +     KLV++GD GTGKT+   R + G+F  + EPTIG       FFT   
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57

Query: 53  SLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG 112
             +   ++F  WDTAGQE++  L   YY     A++++D++   T+       ++L R  
Sbjct: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115

Query: 113 NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
             I +  L  NK D+ + R+V   +   F ++  + Y E SAK+  N  + F  +A++LA
Sbjct: 116 ENIPI-VLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172

Length = 219

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 91.9 bits (228), Expect = 1e-23
 Identities = 47/161 (29%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 11  AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
           +K++++GD+  GKT L  RF K  F    + TIG  F  +   +        +WDTAGQE
Sbjct: 1   SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQE 60

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDS 129
           R+  +A  YYRGA A ++V+D++++ +     + +++  ++ +   V++ L   K DL S
Sbjct: 61  RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 130 --QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168
             Q  +  ++  + ++E    Y   SA T +N+ + F+ +A
Sbjct: 121 PAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 90.6 bits (225), Expect = 3e-23
 Identities = 47/162 (29%), Positives = 95/162 (58%), Gaps = 3/162 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V+LG  G GK++L ++F++  F +  +PTI  ++  Q+  +       +I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQV-EIDGRQCDLEILDTAGTEQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++  +Y +     ++VY +++  + N   +L +++ R + +  V M L  NK+DL+  
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121

Query: 131 REVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRL 171
           R+V  E+G   SQ+ G   + ETSA+   N++E+F ++ +++
Sbjct: 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 90.5 bits (225), Expect = 9e-23
 Identities = 47/167 (28%), Positives = 87/167 (52%), Gaps = 3/167 (1%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           +++ + KL+L+GD G GKT+   R + G+F  +  PT+G          +   + F++WD
Sbjct: 5   DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWD 64

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125
           TAGQE++  L   YY     A++++D+++  T+       +++ R    I  + L  NK 
Sbjct: 65  TAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENI-PIVLVGNKV 123

Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
           D+   R+V   +   F ++  + Y + SAK+  N  + F  +A+RL 
Sbjct: 124 DV-KDRQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT 168

Length = 215

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 11  AKLVLLGDMGTGKTSLALRFIK--GQFYDQQEPTIGAAFFTQILSL--SEATVKFDIWDT 66
           A+  ++GD   GK++L   F      F      T G     + + +  +  +V+  I+D+
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI-VVMALAANKS 125
           AGQE +  +    +   A   VVYD++N  +FN  ++ +  ++   + +     L  NK 
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
           DL  +REV   + +  +Q N + + ETSAK        F  +A+
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 85.6 bits (212), Expect = 3e-21
 Identities = 58/175 (33%), Positives = 85/175 (48%), Gaps = 17/175 (9%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQED 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDS- 129
           Y  L P+ Y      ++ + I + D+  N   K   E+ +     V + L  NK DL + 
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 120

Query: 130 -----------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
                      Q  V  EEG   +++ G F Y+E SAKT + + E+F E+A R A
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF-EMATRAA 174

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 84.9 bits (210), Expect = 4e-21
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 4/159 (2%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++V+ G  G GK+SL LRF+KG F +   PTI   +  Q++S S++     I DT G  +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSHQ 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRAN---KLVQELQRQGNQIVVMALAANKSDLD 128
           + ++  +      A ++VY I++  +        +L+ E++    + + + L  NK D  
Sbjct: 62  FPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDES 121

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
             REV + EG   ++     ++ETSAKT  N+ ELF E+
Sbjct: 122 PSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 85.3 bits (211), Expect = 5e-21
 Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 20/184 (10%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAF--FTQILSLSEATVKFDIWDTAGQ 69
           K+V+LGD   GKTSL   F +G F    EPT+   F  +   + +    V+  +WDTAGQ
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV---FENYIHDIFVDGLAVELSLWDTAGQ 58

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQ--GNQIVVMALAANKSD 126
           E +  L  + Y      ++ + + N D+  N  +K + E++    G ++V++AL   K D
Sbjct: 59  EEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVAL---KCD 115

Query: 127 LDSQREVPTEEGEQFSQENGMF---------YIETSAKTAQNINELFYEIAKRLARVSPP 177
           L   R          S E G+          Y+E SAK  + +NE F E A+      PP
Sbjct: 116 LREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPP 175

Query: 178 KRSG 181
               
Sbjct: 176 HPHS 179

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 84.1 bits (208), Expect = 1e-20
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++GD   GKTSL   F  G+F ++  PT+   + T    +    V+  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDC-RVDGKPVQLALWDTAGQEE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDS- 129
           Y  L P+ Y  A   ++ + I   D+  N   K ++E++R    + V+ L   K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVI-LVGLKKDLRQE 120

Query: 130 ---------QREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFYEIAKRLA 172
                       VP ++ +  ++  G   Y+E SA T + ++++F E A R A
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF-EAATRAA 172

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 84.2 bits (208), Expect = 2e-20
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 7/178 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +L+GD   GK  +      G         +G  + T  + L    VK  +WDT+GQ R
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   Y RGA   ++VYDI+N  +F+  ++ ++E+      +  + L  N+  L  +R
Sbjct: 68  FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKI-LVGNRLHLAFKR 126

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL------ARVSPPKRSGIN 183
           +V TE+ + +++ NGM + E S     NI E F E+A+ +         SPP+    N
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGRPPQSPPQNCSRN 184

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 84.0 bits (208), Expect = 3e-20
 Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 11/176 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILS--LSEAT-VKFDIWDTAG 68
           ++VLLGD G GK+SLA  F  G + D      G   + + +S    EAT V +D W+   
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWE--- 58

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQ--RQGNQIVVMALAANKSD 126
           QE    L     +   A V+VY +++  +F +A++L  +L+  RQ   I ++ L  NKSD
Sbjct: 59  QEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPII-LVGNKSD 117

Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK--RLARVSPPKRS 180
           L   REV  +EG   +      +IETSA    N++ELF  I +  RL R S  K +
Sbjct: 118 LVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKEKNT 173

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 82.0 bits (202), Expect = 1e-19
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 3/157 (1%)

Query: 16  LGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL 75
           +GD GTGKT+   R + G+F  +   T+G      +   +   ++F++WDTAGQE++  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 76  APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT 135
              YY     A++++D++   T+       ++L R    I ++ L  NK D+   R+V  
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIV-LCGNKVDV-KDRKVKA 118

Query: 136 EEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
           +    F ++  + Y + SAK+  N  + F  +A++L 
Sbjct: 119 KS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 77.4 bits (191), Expect = 9e-19
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 2/115 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V++GD G+GK+SL  + + G+F  +     G       L +   T   +IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQEL--QRQGNQIVVMALAANK 124
                 ++ + A A ++VYD+++ ++ N  ++L+  L   R+    + + L  NK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++V+LG    GKT++  RF+ G+F +Q  PTI   F  ++ S+     + DI DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQEL---------QRQGNQIVVMALAA 122
           + ++  +        ++V+ + N ++F    +L +++         + + N  + M +  
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 123 NKSDLDSQREVPTEEGEQF-SQENGMFYIETSAKTAQNINELFYEIA 168
           NK+D D  REV  +E EQ    +    Y E SAK   N++E+F  + 
Sbjct: 121 NKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 74.5 bits (183), Expect = 8e-17
 Identities = 44/172 (25%), Positives = 86/172 (50%), Gaps = 10/172 (5%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +LV +G  G GKT+L  RF+   F  +   T+     ++   ++   V  DI DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTV-EELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQE-LQRQGNQIVVMALAANKSDLDSQ 130
           + ++  +  +   A  +VY + + ++F    +L +E L+ + ++ V + +  NK D  ++
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 131 REVPTEEGE---QFSQENGMFYIETSAKTAQNINELFYEI---AKRLARVSP 176
           R+V   +     +    NG  ++E SAK  +N+ E+F E+   A   + +SP
Sbjct: 120 RQVEAADALSTVELDWNNG--FVEASAKDNENVTEVFKELLQQANLPSWLSP 169

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 73.2 bits (180), Expect = 2e-16
 Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 24/191 (12%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ LLGD   GKTSL +++++G+F ++   T+G  F  + +S+    + F IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDL- 127
           + ++ P+  + A A + ++D++   T N     ++E  RQ    N+  +  L   K DL 
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNS----IKEWYRQARGFNKTAIPILVGTKYDLF 117

Query: 128 -----DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGI 182
                + Q E+ T++  ++++      I  S   + N+ ++F  +   LA+V        
Sbjct: 118 ADLPPEEQEEI-TKQARKYAKAMKAPLIFCSTSHSINVQKIFKFV---LAKV-------F 166

Query: 183 NLNPETPERKG 193
           +L    PE   
Sbjct: 167 DLPLTIPEILT 177

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 72.9 bits (179), Expect = 2e-16
 Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 22/174 (12%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAF--FTQILSLSEATVKFDIWDTAGQ 69
           K+VL+GD   GKT+L   F K  F +   PT+   F  +T    + +  ++  +WDT+G 
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV---FENYTASFEVDKQRIELSLWDTSGS 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSD-- 126
             Y ++ P+ Y  + A ++ +DIS  +T +    K   E++       V+ L   KSD  
Sbjct: 60  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVL-LVGCKSDLR 118

Query: 127 --------LDSQREVPT--EEGEQFSQENG-MFYIETSAKTAQN-INELFYEIA 168
                   L ++R++P   E+G   +++ G   Y+E SAKT++N + ++F E+A
Sbjct: 119 TDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF-EMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 72.4 bits (178), Expect = 3e-16
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 28/169 (16%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEP-----TIGAAFFTQILSLSEATVKFDIWDT 66
           ++VL+GD G GK+SL +  +  +F +         TI A    + +  +       I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTT-------IVDT 56

Query: 67  --AGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNR-ANKLVQELQRQGNQIVVMALAAN 123
               Q+R +  A +  R A    +VY +    T  R   K +  ++R G ++ ++ L  N
Sbjct: 57  SSRPQDRANLAAEI--RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPII-LVGN 113

Query: 124 KSDL-DSQREVPTEEG-----EQFSQ-ENGMFYIETSAKTAQNINELFY 165
           KSDL D   +   EE       +F + E     +E SAKT  N++E+FY
Sbjct: 114 KSDLRDGSSQAGLEEEMLPIMNEFREIET---CVECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 12/165 (7%)

Query: 11  AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFT-QILSLSEATVKFDIWDTAGQ 69
           AKL+L+G  G GKTSL  + I  +F   +  T G      +I +     ++ ++WD  GQ
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQ 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ---IVVMALAANKSD 126
           E YH+    +    +  ++V+D+   D  +R    +++++  G     I+V        D
Sbjct: 62  EIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVILVG----THID 117

Query: 127 LDSQREVPTEEG--EQFSQENGMFYIETSAKTAQNINELFYEIAK 169
            +S  E   ++   ++F           S K  + I EL   IAK
Sbjct: 118 -ESCDEDILKKALNKKFPAIIN-DIHFVSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 69.4 bits (170), Expect = 4e-15
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAF--FTQILSLSEATVKFDIWDTAGQ 69
           K VL+GD   GKTSL + +    +  +  PT   AF  F+ ++ +    V+  + DTAGQ
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT---AFDNFSVVVLVDGKPVRLQLCDTAGQ 58

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL- 127
           + +  L P+ Y      ++ + + N  +F N + K + E+ R+ N    + L   ++DL 
Sbjct: 59  DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEI-RKHNPKAPIILVGTQADLR 117

Query: 128 -----------DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELF 164
                        ++ V     +  +++ G   YIE SA T +N+ E+F
Sbjct: 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 68.3 bits (167), Expect = 1e-14
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 14/165 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V +GD   GKT + + +    F     PT+   F   +  +   TV   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGNTVNLGLWDTAGQED 61

Query: 72  YHSLAPMYYRGAAAAVVVYD-ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y+ L P+ YRGA   ++ +  IS     N   K + EL+     + ++ L   K DL   
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIV-LVGTKLDLRDD 120

Query: 131 RE----------VPTEEGEQFSQENGM-FYIETSAKTAQNINELF 164
           ++          + T +GE+  ++ G   YIE S+KT QN+  +F
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 66.8 bits (164), Expect = 3e-14
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 17/161 (10%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++++LG  G GKT++  +   G+      PTIG      + ++    VKF +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEV-VTTIPTIG----FNVETVEYKNVKFTVWDVGGQDK 55

Query: 72  YHSLAPMYYRGAAAAVVVYDISN----MDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
              L   YY      + V D S+     +  N  +KL+ E + +G  ++++   ANK DL
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLIL---ANKQDL 112

Query: 128 ---DSQREVPTEEGEQFSQENGMFYIE-TSAKTAQNINELF 164
               ++ E+  E     S +   ++I+  SA T   ++E  
Sbjct: 113 PGALTESEL-IELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 43/174 (24%), Positives = 85/174 (48%), Gaps = 15/174 (8%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           N+ ++ K+V++GD   GKT+L   F K  F +   PT+   + T    +    ++  +WD
Sbjct: 1   NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 59

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKL----VQELQRQGNQIVVMALA 121
           T+G   Y ++ P+ Y  + A ++ +DIS  +T +   K     +QE       ++V   +
Sbjct: 60  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 119

Query: 122 ANKSDL--------DSQREVPTEEGEQFSQENGMF-YIETSAKTAQN-INELFY 165
             ++D+          Q  V  ++G   +++ G   YIE SA  ++N + ++F+
Sbjct: 120 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 173

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 16/183 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +  Q  ++   TV  ++WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQ-TAVDGRTVSLNLWDTAGQEE 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L  + Y      ++ + I++  ++ N  +K   E+      + ++ L   K DL + 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPIL-LVGTKKDLRND 122

Query: 131 REV----------PT--EEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
            +           P   ++G   +++     Y+E SA     + E+F E  + +   +P 
Sbjct: 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPI 182

Query: 178 KRS 180
           K +
Sbjct: 183 KDT 185

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 59.3 bits (143), Expect = 5e-11
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 35/227 (15%)

Query: 4   PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
           P   +++ KLVL+GD+  GKT++     K  + +   PT+   + T  L   E  V+  +
Sbjct: 7   PQPLVVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSL 65

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAA 122
           WDT+G   Y ++ P+ Y  + A ++ +DIS  + F+ A  K   E+        ++ L  
Sbjct: 66  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRIL-LIG 124

Query: 123 NKSD----------LDSQREVPT--EEGEQFSQENGM-FYIETSAKTAQ-NINELFYEIA 168
            K+D          L +Q++ P   E+G   +++ G   Y+E SA T++ +I+ +F   +
Sbjct: 125 CKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTAS 184

Query: 169 -------KRLARVSP-----------PKRSGINLNPETPERKGFCCL 197
                    LA+ SP           P RS +  +    E+   C +
Sbjct: 185 LLCINKLSPLAKKSPVRSLSKRLLHLPSRSELISSTFKKEKAKSCSV 231

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 58.0 bits (140), Expect = 8e-11
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 24/173 (13%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++ +        ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y      +V + + +  +F N   K V E+            G QI      
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121

Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E GE+ +++     Y+E SA T + +  +F E
Sbjct: 122 STIEKLAKNK-----QKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 57.0 bits (137), Expect = 3e-10
 Identities = 42/170 (24%), Positives = 86/170 (50%), Gaps = 15/170 (8%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + K+V++GD   GKT+L   F K  + +   PT+   + T    + +  ++ ++WDT+G 
Sbjct: 1   RCKIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGS 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKL----VQELQRQGNQIVVMALAANKS 125
             Y ++ P+ Y  + A ++ +DIS  +T +   K      QE       ++V      ++
Sbjct: 60  SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRT 119

Query: 126 DLDSQRE--------VPTEEGEQFSQENG-MFYIETSAKTAQN-INELFY 165
           DL + RE        V  E+G   +++ G + Y+E S++ ++N + ++F+
Sbjct: 120 DLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFH 169

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 55.4 bits (133), Expect = 6e-10
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 8/127 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++V LG  G GKT++  +  + +F  Q  PTIG      + ++    +KF IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIG----FNVETVEYKNLKFTIWDVGGKHK 55

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQ 130
              L   YY    A V V D S+ D  + A ++L + L  +  +  ++ + ANK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115

Query: 131 REVPTEE 137
             +  EE
Sbjct: 116 --LSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 9/158 (5%)

Query: 11  AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
            ++++LG    GKT++  +   G+      PTIG   F  + +++   VKF +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEI-VTTIPTIG---FN-VETVTYKNVKFTVWDVGGQE 69

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQE-LQRQGNQIVVMALAANKSDLD- 128
               L   Y+    A + V D ++ D    A + +   L  +      + + ANK DL  
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG 129

Query: 129 --SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
             S+ E+    G    ++        SA T + ++E  
Sbjct: 130 AMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGL 167

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 8/154 (5%)

Query: 13  LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72
           + L+G   +GKT+L      GQF +   PT+G  F  + ++    T+K  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 73  HSLAPMYYRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD--- 128
            S+   Y RG  A V V D ++ +    A N+L   L++   + + + +  NK+DL    
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINE 162
           S  E+  +   +   +  +     SAK   NI+ 
Sbjct: 118 SVDELIEQMNLKSITDREVSCYSISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 16/169 (9%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y      ++ + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 120

Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 169

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 53.1 bits (127), Expect = 4e-09
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 14/168 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F ++  PT+   +   + ++        ++DTAGQE 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLYDTAGQED 60

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQ---------GNQIVVMALA 121
           Y  L P+ Y      ++ + + N  +F N   + V EL+           G QI +    
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDP 120

Query: 122 ANKSDLDSQREVP--TEEGEQFSQENG-MFYIETSAKTAQNINELFYE 166
              + L+  +E P   E+G++ ++E G   Y+E SA T + +  +F E
Sbjct: 121 KTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 168

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 52.6 bits (126), Expect = 8e-09
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNK  + +++++G    GKT++  +   G+      PTIG      + +++   + F +W
Sbjct: 10  GNK--EMRILMVGLDAAGKTTILYKLKLGESVTTI-PTIG----FNVETVTYKNISFTVW 62

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI----VVMAL 120
           D  GQ++   L   YY      + V D ++ D  + A    +EL R  N+      V+ +
Sbjct: 63  DVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAR---EELHRMLNEDELRDAVILV 119

Query: 121 AANKSDL 127
            ANK DL
Sbjct: 120 FANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 49.9 bits (119), Expect = 8e-08
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 12/170 (7%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++ +LG  G GKT++  +F+  +F ++  PT     +   + LS       I D    +R
Sbjct: 2   RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61

Query: 72  YHSLAPMYY--------RGAAAAVVVYDISNMDTFNRANKLVQ---ELQRQGNQIVVMAL 120
           Y   A   +        R + A ++VYDI + D+F+    L Q   E +  GN+   + +
Sbjct: 62  YPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVV 121

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAK 169
             NK D    R  P        +++    Y+E SAK   +I  LF E+  
Sbjct: 122 VGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLI 171

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 14/127 (11%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNK  + ++++LG    GKT++  +   GQ      PT+G      + +++   VKF++W
Sbjct: 6   GNK--EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG----FNVETVTYKNVKFNVW 58

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN----QIVVMAL 120
           D  GQ++   L   YY G    + V D ++ D  + A    QEL R  N    +  ++ +
Sbjct: 59  DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEAR---QELHRIINDREMRDALLLV 115

Query: 121 AANKSDL 127
            ANK DL
Sbjct: 116 FANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 26/166 (15%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATV------ 59
           NK+I+ K+V++G +G GKT+    F++    D+      A   +        T       
Sbjct: 6   NKMIETKIVVIGPVGAGKTT----FVR-ALSDKPLVITEADASSVSGKGKRPTTVAMDFG 60

Query: 60  --------KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQ-R 110
                      ++ T GQER+  +  +  RGA  A+V+ D S   TF  A +++  L  R
Sbjct: 61  SIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR 119

Query: 111 QGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAK 155
               +VV   A NK DL      P +  E    E   +  IE  A 
Sbjct: 120 NPIPVVV---AINKQDLFDALP-PEKIREALKLELLSVPVIEIDAT 161

Length = 187

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 13  LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS---EATVKFDIWDTAGQ 69
           +V+LG    GKT++  R    +F +   PT G  F T+ + +S      V F  WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTV-PTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLD 128
           E+   L   Y R     V V D  +++    A   + ++ +   NQ V + + ANK DL 
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLP 122

Query: 129 SQREVPTEEGEQ 140
           +   +P  E E+
Sbjct: 123 NA--LPVSEVEK 132

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 28/167 (16%)

Query: 16  LGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-- 72
           LG  G+GK++L   F+   F  +   PTI   +       +  TV+       GQE+Y  
Sbjct: 10  LGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRY-------AVNTVEV-----PGQEKYLI 57

Query: 73  -HSLAPMYYRGAAA---------AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAA 122
              +                   A +VYD S+ ++F+   ++ ++    G    +    A
Sbjct: 58  LREVGEDEEAILLNDAELAACDVACLVYDSSDPNSFSYCAEVYKKYFMLGEIPCLF--VA 115

Query: 123 NKSDLDSQREVPTEEGEQFSQENGMFY-IETSAKTAQNINELFYEIA 168
            K+DLD Q++    + ++F ++ G+   +  S++   + NELF ++A
Sbjct: 116 AKADLDEQQQRAEVQPDEFCRKLGLPPPLHFSSRLGDSSNELFTKLA 162

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIG-------------AAFFTQILSLSE 56
           Q +++++GD G GK+SL    +KG    +   TIG              +    I   SE
Sbjct: 21  QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSE 80

Query: 57  ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG 112
                ++WD +G ERY     ++Y      + V+D+S   T     K   E+   G
Sbjct: 81  RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATG 136

Length = 334

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G    GKT++  +F+ G+      PTIG    + +  +    ++F +WD  GQE 
Sbjct: 17  KVIIVGLDNAGKTTILYQFLLGEVV-HTSPTIG----SNVEEIVYKNIRFLMWDIGGQES 71

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANK-LVQELQRQGNQIVVMALAANKSDL 127
             S    YY    A ++V D ++ +      + L + L  +  +  V+ + ANK DL
Sbjct: 72  LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 17/159 (10%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++++LG  G GKT++  R   G+      PTIG      + +++   +KF +WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV-TTIPTIG----FNVETVTYKNLKFQVWDLGGQT- 54

Query: 72  YHSLAPM---YYRGAAAAVVVYDISNMDTFNRANK-LVQELQRQGNQIVVMALAANKSDL 127
             S+ P    YY    A + V D ++ D    +   L   L+ +  +  V+ + ANK D+
Sbjct: 55  --SIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDM 112

Query: 128 D---SQREVPTEEGEQFSQENGMFYI-ETSAKTAQNINE 162
               S+ EV  E+      ++  + I +TSA   + ++E
Sbjct: 113 PGALSEAEV-AEKLGLSELKDRTWQIFKTSATKGEGLDE 150

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 11/128 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-----SEATVKFDIWDT 66
           K+++LGD G GK+SL     K Q       T+G +   +  +       E T   ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 67  AGQ----ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAA 122
            G     E   S   ++Y      + V+D++N  +     +   E   +        L  
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRD--TFPAGLLV 119

Query: 123 NKSDLDSQ 130
              D DS+
Sbjct: 120 TNGDYDSE 127

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 17/174 (9%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +++++G    GKT++  +   G+      PTIG      + ++    +KF +WD  GQ
Sbjct: 17  EVRILMVGLDAAGKTTILYKLKLGEVV-TTIPTIG----FNVETVEYKNLKFTMWDVGGQ 71

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI----VVMALAANKS 125
           ++   L   YY+     + V D ++ +   R     +EL+R  ++      V+ + ANK 
Sbjct: 72  DKLRPLWRHYYQNTNGLIFVVDSNDRE---RIGDAREELERMLSEDELRDAVLLVFANKQ 128

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYIE-TSAKTAQNINELFYEIAKRLARVS 175
           DL    S  EV TE+    S     +YI+   A TAQ + E    ++  + +  
Sbjct: 129 DLPNAMSTTEV-TEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181

Length = 182

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +++LLG    GK++L  +    +      PT+G  F  ++L L E  +   +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVG--FNVEMLQL-EKHLSLTVWDVGGQEK 56

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQE-LQRQGNQIVVMALAANKSDL 127
             ++   Y       V V D S+    + + K ++  L+ +  + V + L ANK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +++LLG    GKT++ L+ +  +      PT G   F  I ++     K ++WD  GQ
Sbjct: 15  EVRILLLGLDNAGKTTI-LKQLASEDISHITPTQG---F-NIKNVQADGFKLNVWDIGGQ 69

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANK-LVQELQRQGNQIVVMALAANKSDL- 127
            +       Y+      + V D ++   F  A + LV+ L+ +    V + + ANK DL 
Sbjct: 70  RKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLL 129

Query: 128 --DSQREVPTEEGEQFSQENGMFYIET-SAKTAQNINE 162
                 EV  E        +  ++I+  SAKT + + E
Sbjct: 130 TAAPAEEV-AEALNLHDIRDRSWHIQACSAKTGEGLQE 166

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 16/152 (10%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +++++G    GKT++  +   G+      PTIG      + ++    + F +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG----FNVETVEYKNISFTVWDVGGQDK 56

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI----VVMALAANKSDL 127
              L   Y++     + V D ++ +   R  +  +ELQR  N+      V+ + ANK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRE---RIGEAREELQRMLNEDELRDAVLLVFANKQDL 113

Query: 128 D---SQREVPTEEGEQFSQENGMFYIETSAKT 156
               S  EV T++    S  N  +YI+ +  T
Sbjct: 114 PNAMSAAEV-TDKLGLHSLRNRNWYIQATCAT 144

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++++LG    GKT++  +F  G+      PT+G   F  I +L     K +IWD  GQ+ 
Sbjct: 16  RILMLGLDNAGKTTILKKF-NGEDISTISPTLG---F-NIKTLEYNGYKLNIWDVGGQKS 70

Query: 72  YHSLAPMYYRGAAAAVVVYDISNM----DTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
             S    Y+    A + V D S+     D      KL+ E +  G  +++    ANK DL
Sbjct: 71  LRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIF---ANKQDL 127

Query: 128 D 128
            
Sbjct: 128 P 128

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 42.0 bits (100), Expect = 9e-05
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 13/86 (15%)

Query: 114 QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA- 172
           QIVV    ANK DL    E   E  E+   +        SA T Q ++EL Y +A+ L  
Sbjct: 277 QIVV----ANKMDLPEAEENLEEFKEKLGPK----VFPISALTGQGLDELLYAVAELLEE 328

Query: 173 ----RVSPPKRSGINLNPETPERKGF 194
                +   +           E K F
Sbjct: 329 TPEFPLEEEEVEEEVYYKFEEEEKDF 354

Length = 424

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 91  DISNMDTFNRANKLVQELQRQGN------QIVVMALAANKSDLDSQREVPTEEGEQFSQE 144
           DI  +D       +  EL++         +I+V     NK DL  + E   +        
Sbjct: 245 DIEAVDPVEDYKTIRNELEKYSPELADKPRILV----LNKIDLLDEEEEREKRAALELAA 300

Query: 145 NGMFYIETSAKTAQNINELFYEIAKRL 171
            G      SA T + ++EL   + + L
Sbjct: 301 LGGPVFLISAVTGEGLDELLRALWELL 327

Length = 335

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 20/133 (15%)

Query: 14  VLLGDMGTGKTSLALRFIKGQF--------YDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           ++LG    GKT+  L   K +F          +  PT+G    T  + + +A + F  WD
Sbjct: 3   LILGLDNAGKTTF-LEQTKTKFSKNYKGLNPSKITPTVGLNIGT--IEVGKARLMF--WD 57

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR----QGNQIVVMALA 121
             GQE   SL   YY  +   + V D ++ + FN +    +++      +G   V + + 
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEG---VPLLVL 114

Query: 122 ANKSDLDSQREVP 134
           ANK DL     V 
Sbjct: 115 ANKQDLPDALSVA 127

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 89  VYDISN-MDTFNRANKLVQELQRQG------NQIVVMALAANKSDLDSQREVPTEEGEQF 141
           V D+S   D       +  EL+          +IVV     NK DL    E   +  E  
Sbjct: 85  VIDLSGEDDPVEDYETIRNELEAYNPGLAEKPRIVV----LNKIDLLDAEERFEKLKELL 140

Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
            +  G      SA T + ++EL  ++AK L
Sbjct: 141 KELKGKKVFPISALTGEGLDELLKKLAKLL 170

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 13/165 (7%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL ++G++ +GK++L  R++ G  Y Q E   G  F  ++L   ++ +   I D  G   
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGS-YVQLESPEGGRFKKEVLVDGQSHLLL-IRDEGGA-- 57

Query: 72  YHSLAPMYYRGAAAAVV-VYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDS 129
                   + G   AV+ V+ + +  +F    +L  +L    N   + + L   +  + +
Sbjct: 58  ----PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISA 113

Query: 130 Q--REVPTEEGEQF-SQENGMFYIETSAKTAQNINELFYEIAKRL 171
              R +      Q  +      Y ET A    N+  +F E A+++
Sbjct: 114 SNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +++++G    GKT++  +   G+      PTIG      + ++    + F +WD  GQ
Sbjct: 17  EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG----FNVETVEYKNISFTVWDVGGQ 71

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ----IVVMALAANKS 125
           ++   L   Y++     + V D ++ D    A     EL R  N+      V+ + ANK 
Sbjct: 72  DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQ 128

Query: 126 DL 127
           DL
Sbjct: 129 DL 130

Length = 181

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 14/131 (10%)

Query: 11  AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
           AK+V LG    GKT+L L  +K     Q  PT+     ++ L++    VKF  +D  G E
Sbjct: 20  AKIVFLGLDNAGKTTL-LHMLKDDRLAQHVPTLH--PTSEELTI--GNVKFTTFDLGGHE 74

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANK----LVQELQRQGNQIVVMALAANKSD 126
           +   +   Y+      V + D ++ + F  + +    L+ + +     I+++    NK D
Sbjct: 75  QARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILIL---GNKID 131

Query: 127 LDSQREVPTEE 137
                 V  EE
Sbjct: 132 K--PGAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.98
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.98
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.98
PLN00223	181	ADP-ribosylation factor; Provisional	99.98
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
PTZ00099	176	rab6; Provisional	99.97
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.97
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
PLN00023	334	GTP-binding protein; Provisional	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
KOG1673	205	consensus Ras GTPases [General function prediction	99.94
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.94
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
PRK15494	339	era GTPase Era; Provisional	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.89
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.89
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.87
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
PRK05306	787	infB translation initiation factor IF-2; Validated	99.85
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.85
COG1159	298	Era GTPase [General function prediction only]	99.85
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
COG2229	187	Predicted GTPase [General function prediction only	99.84
PRK12317	425	elongation factor 1-alpha; Reviewed	99.84
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.83
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.83
COG1160	444	Predicted GTPases [General function prediction onl	99.83
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
COG0486	454	ThdF Predicted GTPase [General function prediction	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.81
COG0218	200	Predicted GTPase [General function prediction only	99.81
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.8
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.79
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.78
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.77
COG2262	411	HflX GTPases [General function prediction only]	99.76
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.76
PRK12735	396	elongation factor Tu; Reviewed	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.76
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.74
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.74
CHL00071	409	tufA elongation factor Tu	99.73
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.73
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.73
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.72
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.72
COG1084	346	Predicted GTPase [General function prediction only	99.72
PLN00043	447	elongation factor 1-alpha; Provisional	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.71
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.71
PRK00049	396	elongation factor Tu; Reviewed	99.71
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.69
PLN03127	447	Elongation factor Tu; Provisional	99.69
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
PLN03126	478	Elongation factor Tu; Provisional	99.68
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.68
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.67
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.67
PTZ00141	446	elongation factor 1- alpha; Provisional	99.67
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.67
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.66
PRK13351	687	elongation factor G; Reviewed	99.66
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.66
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.66
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.65
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.65
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.63
COG3596	296	Predicted GTPase [General function prediction only	99.62
COG0536	369	Obg Predicted GTPase [General function prediction	99.61
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.61
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.61
PRK12739	691	elongation factor G; Reviewed	99.61
COG1163	365	DRG Predicted GTPase [General function prediction	99.6
KOG0090	238	consensus Signal recognition particle receptor, be	99.59
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.59
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.58
PRK09866	741	hypothetical protein; Provisional	99.58
PRK09602	396	translation-associated GTPase; Reviewed	99.56
KOG1145	683	consensus Mitochondrial translation initiation fac	99.55
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.55
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.53
PRK00007	693	elongation factor G; Reviewed	99.52
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.52
PRK12740	668	elongation factor G; Reviewed	99.52
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.51
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.51
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.51
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.49
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.49
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.48
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.48
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.47
PRK14845	1049	translation initiation factor IF-2; Provisional	99.47
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.45
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.44
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.43
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.43
PRK13768	253	GTPase; Provisional	99.43
PTZ00258	390	GTP-binding protein; Provisional	99.42
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.39
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.38
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.38
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.37
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.35
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.35
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.34
PRK07560	731	elongation factor EF-2; Reviewed	99.34
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.33
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.33
PRK09601	364	GTP-binding protein YchF; Reviewed	99.32
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.31
PTZ00416	836	elongation factor 2; Provisional	99.31
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.29
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.29
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.28
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.26
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.24
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.24
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.24
KOG0410	410	consensus Predicted GTP binding protein [General f	99.23
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.19
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.18
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.17
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.15
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.15
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.15
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.15
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.1
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.08
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.07
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.05
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.03
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.02
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.99
PRK12289	352	GTPase RsgA; Reviewed	98.98
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.97
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.94
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.94
PRK00098	298	GTPase RsgA; Reviewed	98.92
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.9
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.89
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.89
PRK12288	347	GTPase RsgA; Reviewed	98.89
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.88
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.85
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.85
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.84
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.84
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.83
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.81
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.81
KOG1143	591	consensus Predicted translation elongation factor	98.78
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.75
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.73
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.72
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.68
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.68
KOG2486	320	consensus Predicted GTPase [General function predi	98.67
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.67
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.67
COG1161	322	Predicted GTPases [General function prediction onl	98.64
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.64
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.63
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.62
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.62
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.61
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.61
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.58
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.56
KOG0460	449	consensus Mitochondrial translation elongation fac	98.53
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.52
PRK10416	318	signal recognition particle-docking protein FtsY;	98.51
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.5
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.48
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.47
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.46
PRK12288	347	GTPase RsgA; Reviewed	98.45
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.44
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.43
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.43
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.42
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.41
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.4
PRK13796	365	GTPase YqeH; Provisional	98.39
COG1162	301	Predicted GTPases [General function prediction onl	98.39
PRK12289	352	GTPase RsgA; Reviewed	98.38
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.35
PRK14974	336	cell division protein FtsY; Provisional	98.35
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.33
PRK13796	365	GTPase YqeH; Provisional	98.33
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.31
PRK01889	356	GTPase RsgA; Reviewed	98.3
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.28
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.27
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.26
COG3523	1188	IcmF Type VI protein secretion system component Va	98.21
cd03112	158	CobW_like The function of this protein family is u	98.19
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.18
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.17
PRK13695	174	putative NTPase; Provisional	98.16
PRK00098	298	GTPase RsgA; Reviewed	98.14
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.1
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.1
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.07
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.04
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.04
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.03
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.02
COG1162	301	Predicted GTPases [General function prediction onl	97.99
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.97
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.97
PRK10867	433	signal recognition particle protein; Provisional	97.92
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.92
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.91
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.9
TIGR00959	428	ffh signal recognition particle protein. This mode	97.88
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.87
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.86
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.81
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.81
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.8
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.8
cd03114	148	ArgK-like The function of this protein family is u	97.78
KOG2484	435	consensus GTPase [General function prediction only	97.78
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.77
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.76
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.72
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.72
PRK08118	167	topology modulation protein; Reviewed	97.71
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.69
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.69
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.67
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.67
cd03111	106	CpaE_like This protein family consists of proteins	97.65
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.65
PRK07261	171	topology modulation protein; Provisional	97.65
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.65
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.63
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.6
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.59
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.56
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.55
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.52
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.5
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.49
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.49
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.48
cd02036	179	MinD Bacterial cell division requires the formatio	97.46
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.44
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.39
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.39
COG0802	149	Predicted ATPase or kinase [General function predi	97.39
PRK13851	344	type IV secretion system protein VirB11; Provision	97.39
PRK06217	183	hypothetical protein; Validated	97.38
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.37
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.37
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.37
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.37
PRK10646	153	ADP-binding protein; Provisional	97.36
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.35
PRK03839	180	putative kinase; Provisional	97.34
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.34
PRK14530	215	adenylate kinase; Provisional	97.33
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.33
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.33
smart00382	148	AAA ATPases associated with a variety of cellular	97.32
PF00004	132	AAA: ATPase family associated with various cellula	97.3
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.3
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.29
PRK01889	356	GTPase RsgA; Reviewed	97.28
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.28
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.27
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.27
PLN02200	234	adenylate kinase family protein	97.27
PRK14532	188	adenylate kinase; Provisional	97.26
PRK13949	169	shikimate kinase; Provisional	97.26
COG0523	323	Putative GTPases (G3E family) [General function pr	97.23
cd03110	179	Fer4_NifH_child This protein family's function is	97.22
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.22
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.21
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.21
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.2
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.2
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.2
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.19
PRK08233	182	hypothetical protein; Provisional	97.19
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.19
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.18
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.18
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.18
PRK04195	482	replication factor C large subunit; Provisional	97.18
PRK14531	183	adenylate kinase; Provisional	97.18
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.18
PRK14737	186	gmk guanylate kinase; Provisional	97.17
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.17
PTZ00088	229	adenylate kinase 1; Provisional	97.16
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.16
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.16
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.16
PRK00625	173	shikimate kinase; Provisional	97.16
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.15
PRK05480	209	uridine/cytidine kinase; Provisional	97.15
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.13
PRK02496	184	adk adenylate kinase; Provisional	97.13
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.11
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.09
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.09
PHA00729	226	NTP-binding motif containing protein	97.09
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.08
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.08

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-45  Score=252.90  Aligned_cols=175  Identities=38%  Similarity=0.636  Sum_probs=169.0

Q ss_pred             CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059            4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA   83 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   83 (198)
                      .+..++.+||+|+|++|+|||+|+.|+..+.|...+..|+|+++..+.+.++++.+++++|||+|+++|+++..+|++++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHHH
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINE  162 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  162 (198)
                      +++|+|||+++.+||+.+..|+..+.++...+.|.++||||+|+.+.+.+..++++.|+..++++ ++++||+++.|+++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999999899999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHhhCCCC
Q 048059          163 LFYEIAKRLARVSPPK  178 (198)
Q Consensus       163 ~~~~l~~~~~~~~~~~  178 (198)
                      +|..|...+..++...
T Consensus       163 ~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLH  178 (205)
T ss_pred             HHHHHHHHHHHhcccC
Confidence            9999999999988775

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-43  Score=243.02  Aligned_cols=190  Identities=53%  Similarity=0.908  Sum_probs=174.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|..++|||||+-|+..+.+.....+|+|.-+..+.+.+++..+++.||||+|+++|.++.+.|+++|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45799999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||+++.+||..++.|+..+.+...++..+.++|||+|+.+.+++..++++.++...++.++++||++|.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCC-------CCCCCCC-CCCCCCCCcC
Q 048059          168 AKRLARVSPPKRS-------GINLNPE-TPERKGFCCL  197 (198)
Q Consensus       168 ~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~cc~  197 (198)
                      .+.+.+.......       ..-+.+. .+.+..+||+
T Consensus       163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA  200 (200)
T ss_pred             HHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence            9999988887542       2222222 3567788886

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.9e-43  Score=242.32  Aligned_cols=173  Identities=38%  Similarity=0.628  Sum_probs=167.0

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      +.+..+||+++|+++||||+|+.++..+.+...+..|+|.++..+.+.+++..+.+++|||+|+++++++..+|+++|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +++|||+++..||+.+..|+..+..++...+|.++||||+|+...+.+..+.++++|.++|++|+|+||++|.||+++|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q 048059          166 EIAKRLARVSPPK  178 (198)
Q Consensus       166 ~l~~~~~~~~~~~  178 (198)
                      .|.+.+..+....
T Consensus       168 ~La~~i~~k~~~~  180 (207)
T KOG0078|consen  168 SLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHhhcchh
Confidence            9999999766664

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-42  Score=236.22  Aligned_cols=175  Identities=40%  Similarity=0.675  Sum_probs=163.7

Q ss_pred             CCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhc
Q 048059            2 ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYR   81 (198)
Q Consensus         2 ~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   81 (198)
                      +......+.+|++++|..++||||||.++..+.++..|.+|+|.++....+.+.+..+.+++|||+|+++|+.+.+.|++
T Consensus        14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~R   93 (221)
T KOG0094|consen   14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   93 (221)
T ss_pred             cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhcc
Confidence            34455667799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ-IVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      ++.++|+|||+++..||++...|++.+....+. ...+++||||.||.+.+++..+++...++++++.|.++||+.|.||
T Consensus        94 ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NV  173 (221)
T KOG0094|consen   94 DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENV  173 (221)
T ss_pred             CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence            999999999999999999999999999886554 4788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 048059          161 NELFYEIAKRLARVSP  176 (198)
Q Consensus       161 ~~~~~~l~~~~~~~~~  176 (198)
                      ..+|..|...+.+...
T Consensus       174 k~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  174 KQLFRRIAAALPGMEV  189 (221)
T ss_pred             HHHHHHHHHhccCccc
Confidence            9999998888877633

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.8e-40  Score=220.29  Aligned_cols=176  Identities=36%  Similarity=0.632  Sum_probs=163.4

Q ss_pred             CCCC-CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh
Q 048059            1 MARP-GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY   79 (198)
Q Consensus         1 m~~~-~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   79 (198)
                      |... +.....+||+++|.+|+|||||+.++....++.....|+|.++..+.+.+++..+++.||||+|+++|+++++.|
T Consensus         1 M~~~ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSy   80 (209)
T KOG0080|consen    1 MGDSSSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSY   80 (209)
T ss_pred             CCCCccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhH
Confidence            4443 345667999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ  158 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (198)
                      +++|.++|+|||++.+++|..+..|+..+..++. ++...++|+||+|.+.++.++.++..+|++++++.|+++||++.+
T Consensus        81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~  160 (209)
T KOG0080|consen   81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRE  160 (209)
T ss_pred             hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence            9999999999999999999999999999988753 666778999999998899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhCC
Q 048059          159 NINELFYEIAKRLARVSP  176 (198)
Q Consensus       159 ~i~~~~~~l~~~~~~~~~  176 (198)
                      |++..|+.++.++++...
T Consensus       161 ~V~~~FeelveKIi~tp~  178 (209)
T KOG0080|consen  161 NVQCCFEELVEKIIETPS  178 (209)
T ss_pred             cHHHHHHHHHHHHhcCcc
Confidence            999999999999987643

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-40  Score=222.99  Aligned_cols=172  Identities=40%  Similarity=0.703  Sum_probs=165.2

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ..+.+|++++|+.|||||+|+.+++...+.+.+..|+|.++-...+.++++.+++++|||+|++.+++....|++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++..++|..+..|+..++.+...+..+++++||+|+...+.++.++++.||++.++.++++||++++|++++|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC
Q 048059          167 IAKRLARVSPPK  178 (198)
Q Consensus       167 l~~~~~~~~~~~  178 (198)
                      ....+++.....
T Consensus       163 ta~~Iy~~~q~g  174 (216)
T KOG0098|consen  163 TAKEIYRKIQDG  174 (216)
T ss_pred             HHHHHHHHHHhc
Confidence            999988876653

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.6e-38  Score=226.84  Aligned_cols=168  Identities=29%  Similarity=0.460  Sum_probs=155.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|..|||||||+.++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|..+++.+++++|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35699999999999999999999998888788888888887777888888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++++|+.+..|++.+.... ++.|++|||||.|+...+.+..++++.+++.+++++++|||++|.||+++|++|
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l  162 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL  162 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999999997765 579999999999998888888999999999999999999999999999999999


Q ss_pred             HHHHHhhCC
Q 048059          168 AKRLARVSP  176 (198)
Q Consensus       168 ~~~~~~~~~  176 (198)
                      ++.+.....
T Consensus       163 ~~~i~~~~~  171 (189)
T cd04121         163 ARIVLMRHG  171 (189)
T ss_pred             HHHHHHhcC
Confidence            998876555

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.7e-38  Score=227.65  Aligned_cols=165  Identities=32%  Similarity=0.630  Sum_probs=152.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +.|+++|..|||||||++++..+.+...+.+|++.++....+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999998888899998888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      |++++++|+.+..|+..+......+.|+++|+||+|+...+++..+++.+++++. ++.++++||++|.|++++|.+|++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999888776677999999999999888888889999999885 789999999999999999999999


Q ss_pred             HHHhhC
Q 048059          170 RLARVS  175 (198)
Q Consensus       170 ~~~~~~  175 (198)
                      .+....
T Consensus       161 ~~~~~~  166 (202)
T cd04120         161 DILKKM  166 (202)
T ss_pred             HHHHhC
Confidence            887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-39  Score=223.61  Aligned_cols=174  Identities=39%  Similarity=0.686  Sum_probs=166.7

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAA   84 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   84 (198)
                      ..-++-+||+++|++++|||-|+.+++.+.+..+.-+|+|..+....+.++++.++.+||||+|+++|+....+|++++.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      ++++|||++...+|+.+.+|+..++.+...++++++||||+||...+.+..++++.++...+..++++||.++.|++++|
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCC
Q 048059          165 YEIAKRLARVSPPK  178 (198)
Q Consensus       165 ~~l~~~~~~~~~~~  178 (198)
                      ..++..++.....+
T Consensus       169 ~~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  169 ERVLTEIYKIVSKK  182 (222)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888776554

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=9.4e-39  Score=229.12  Aligned_cols=185  Identities=31%  Similarity=0.505  Sum_probs=162.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+|||+|++++..++..+++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888777778877554 3445677788899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ++++++++.+..|+..+....   ..+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999998887643   25689999999999987777888888889998999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCCCCCCCCCCCCCCCcC
Q 048059          169 KRLARVSPPKRSGINLNPETPERKGFCCL  197 (198)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  197 (198)
                      +.+.+...........+...++++.+|||
T Consensus       160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         160 RALRQQRQGGQGPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHhhcccCCCcCCCCCcccccccCce
Confidence            99988888776667777777778888886

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.1e-39  Score=213.73  Aligned_cols=186  Identities=34%  Similarity=0.606  Sum_probs=167.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      .-++.+|+|++|+|||+|+.++....+...|..|+|.++..+++.+.+..++++||||+|+++|+.+...|+++.+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||+++.+||.....|++.+++.+ +..|-++||||.|.++.+.+..++++.|+...++.+|++||++..|++..|..|.
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit  165 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT  165 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence            999999999999999999999986 4789999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhCCC------CCCCCCCCCCCCCCCCCCc
Q 048059          169 KRLARVSPP------KRSGINLNPETPERKGFCC  196 (198)
Q Consensus       169 ~~~~~~~~~------~~~~~~~~~~~~~~~~~cc  196 (198)
                      +.+.+...+      +.....++++. +.+.+||
T Consensus       166 ~qvl~~k~r~~~~~~r~~~~~l~~n~-~~~~k~c  198 (198)
T KOG0079|consen  166 KQVLQAKLRESVEQQRADAVSLKDNS-KSTKKCC  198 (198)
T ss_pred             HHHHHHHHhhcHHHHhhcceEeccCC-CccccCC
Confidence            877766521      13334444443 4555777

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.1e-37  Score=227.45  Aligned_cols=167  Identities=38%  Similarity=0.681  Sum_probs=154.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.|||++|++++..++..++++++++|
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            35699999999999999999999998888788899999988888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l  169 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI  169 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766779999999999998888888889999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 048059          168 AKRLARV  174 (198)
Q Consensus       168 ~~~~~~~  174 (198)
                      +..+.+.
T Consensus       170 ~~~i~~~  176 (216)
T PLN03110        170 LLEIYHI  176 (216)
T ss_pred             HHHHHHH
Confidence            9988763

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.2e-38  Score=216.23  Aligned_cols=170  Identities=36%  Similarity=0.621  Sum_probs=158.9

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ..-+||+++|++|+|||||++++...++...+..|+|.++..+.+.+++..+.+++|||+|+++|.++.-.+++++|..+
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            44599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCCC--CCCCCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLDS--QREVPTEEGEQFSQEN-GMFYIETSAKTAQNI  160 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i  160 (198)
                      +|||++++.+|+.+..|...+..++.    ...|+||+|||.|+..  .++++...++.||+.. +++||++|||...||
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV  166 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV  166 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence            99999999999999999999987654    5689999999999965  3889999999999976 579999999999999


Q ss_pred             HHHHHHHHHHHHhhCCC
Q 048059          161 NELFYEIAKRLARVSPP  177 (198)
Q Consensus       161 ~~~~~~l~~~~~~~~~~  177 (198)
                      .++|..+.+.+++....
T Consensus       167 ~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  167 DEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHHhccch
Confidence            99999999999888764

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.2e-37  Score=225.20  Aligned_cols=167  Identities=34%  Similarity=0.587  Sum_probs=150.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      +||+|+|++|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+|||+|++.+..+++.++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888999988877777777 7889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQG----NQIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELF  164 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~  164 (198)
                      ||++++++++.+..|+..+....    ....|++||+||+|+...+.+..+++..+++..+ ++++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998887632    3568999999999997667788899999999998 699999999999999999


Q ss_pred             HHHHHHHHhhCCC
Q 048059          165 YEIAKRLARVSPP  177 (198)
Q Consensus       165 ~~l~~~~~~~~~~  177 (198)
                      ++|++.+.+....
T Consensus       161 ~~l~~~l~~~~~~  173 (201)
T cd04107         161 RFLVKNILANDKN  173 (201)
T ss_pred             HHHHHHHHHhchh
Confidence            9999988876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.9e-38  Score=211.28  Aligned_cols=171  Identities=37%  Similarity=0.655  Sum_probs=156.7

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      -.++++++++|++-+|||+|++.++.+++..-.+||.|.++....+.+ ++..+++++|||+|++++++.+..|++|+-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            357899999999999999999999999999999999999988777655 4667999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      +++|||+++.+||+.++.|+.....+..  .+..+++||+|+|+..+++++.++++++++..+..|+++||++|.|+++.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999999998877543  44556899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q 048059          164 FYEIAKRLARVSPP  177 (198)
Q Consensus       164 ~~~l~~~~~~~~~~  177 (198)
                      |+.|.+.+...-.+
T Consensus       165 F~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999988876555

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=3.7e-37  Score=222.31  Aligned_cols=187  Identities=35%  Similarity=0.594  Sum_probs=161.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            46999999999999999999999998887888998888777777788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||++++++++.+..|+..+.... ...|++||+||+|+.....+..+++..++...+++++++||++|.|++++|++|.
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence            999999999999999999987754 5689999999999987777778888999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCC--------CCCCCCCCCCCCCCCc
Q 048059          169 KRLARVSPPKRS--------GINLNPETPERKGFCC  196 (198)
Q Consensus       169 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~cc  196 (198)
                      ..+.........        .....+++..++..||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         164 ELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence            999886665421        1222233335777787

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=4.4e-37  Score=220.19  Aligned_cols=185  Identities=31%  Similarity=0.542  Sum_probs=162.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999887778888888877777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++++++.+..|+..+........|+++++||+|+.+.+.+..+++..++...+++++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988766678999999999998777788888899999899999999999999999999999999


Q ss_pred             HHhhCCCCCCCCCCCCCCCCCCCCC
Q 048059          171 LARVSPPKRSGINLNPETPERKGFC  195 (198)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~c  195 (198)
                      +..+......+....++...++..|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~  185 (188)
T cd04125         161 IIKRLEEQELSPKNIKQQFKKKNNC  185 (188)
T ss_pred             HHHHhhcCcCCccccccccccccCc
Confidence            9987766655444444444444444

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=4.3e-37  Score=220.70  Aligned_cols=186  Identities=36%  Similarity=0.619  Sum_probs=158.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      +||+++|++|||||||++++.++.+.. .+.++.+.++....+.+++..+.+.||||||++++...+..++.++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999888753 5677878777777778888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      ||++++++++.+..|+..+........|+++++||+|+...+.+..+++..++..++++++++||++|.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876667899999999999777777778889999999999999999999999999999999


Q ss_pred             HHHhhCCCCCC----CCCCCCCCCCCCCCCc
Q 048059          170 RLARVSPPKRS----GINLNPETPERKGFCC  196 (198)
Q Consensus       170 ~~~~~~~~~~~----~~~~~~~~~~~~~~cc  196 (198)
                      .+.+......+    ....=....+|+.+||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
T cd04112         161 ELKHRKYEQPDEGKFKISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHhccccCCCCcEEeccccCcccccCCCC
Confidence            99888543211    1112223445777777

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=7.1e-37  Score=214.98  Aligned_cols=164  Identities=40%  Similarity=0.710  Sum_probs=151.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988888888888888777778888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      ||++++++++.+..|+..+.....+..|+++|+||+|+...+.+..+++.++++..+++++++||++|.|++++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887766677899999999999888888889999999999999999999999999999999998


Q ss_pred             HHHh
Q 048059          170 RLAR  173 (198)
Q Consensus       170 ~~~~  173 (198)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=6.1e-37  Score=219.57  Aligned_cols=185  Identities=32%  Similarity=0.583  Sum_probs=157.9

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            3469999999999999999999999888878888887665 556678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      +|||++++++++.+..|+..+.+.. ..+.|+++++||+|+...+.+..+++..++..++++++++||++|.|++++|.+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            9999999999999999999887753 357899999999999777777778888898888999999999999999999999


Q ss_pred             HHHHHHhhCCCCCCCCCCCCCCCCCCCCCcC
Q 048059          167 IAKRLARVSPPKRSGINLNPETPERKGFCCL  197 (198)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  197 (198)
                      |++.+.+..++.    ..+++.+++++-||.
T Consensus       162 l~~~l~~~~~~~----~~~~~~~~~~~~~~~  188 (189)
T PTZ00369        162 LVREIRKYLKED----MPSQKQKKKGGLCLI  188 (189)
T ss_pred             HHHHHHHHhhcc----chhhhhhccCCeeee
Confidence            999998776654    222333445555663

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=7.3e-37  Score=222.51  Aligned_cols=181  Identities=37%  Similarity=0.614  Sum_probs=151.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+|+|.+|||||||+++|+.+.+.. +.++++.++....+    ..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999988764 56777766544332    4678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS-------------------QREVPTEEGEQFSQENG-----  146 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~-----  146 (198)
                      |++++++|+.+..|+..+........|++||+||+|+..                   .+.+..+++..+++..+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888888776556789999999999965                   57888999999999876     


Q ss_pred             ---------CeEEEEccCCCCCHHHHHHHHHHHHHhhCCCC-----CCCCCCCCCCCC-CCCCCc
Q 048059          147 ---------MFYIETSAKTAQNINELFYEIAKRLARVSPPK-----RSGINLNPETPE-RKGFCC  196 (198)
Q Consensus       147 ---------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~cc  196 (198)
                               ++|+++||++|.||+++|..+++.+.+...++     +....+.+.+++ +|.+||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCCC
Confidence                     68999999999999999999998887555444     334455666665 555666

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=7.9e-37  Score=217.06  Aligned_cols=164  Identities=28%  Similarity=0.481  Sum_probs=147.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      +...+||+++|++|+|||||+.++..+.+...+.||.+..+ ...+.+++..+.+.+|||+|++.|..+++.+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            45679999999999999999999999999888889988766 45677888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 048059           87 VVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIET  152 (198)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~  152 (198)
                      |+|||++++.+|+.+ ..|+..+.... +..|+++|+||+|+..            .+.+..+++.++++.+++ +|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 79999998765 5789999999999864            346889999999999996 89999


Q ss_pred             ccCCCCC-HHHHHHHHHHHHH
Q 048059          153 SAKTAQN-INELFYEIAKRLA  172 (198)
Q Consensus       153 Sa~~~~~-i~~~~~~l~~~~~  172 (198)
                      ||++|.| |+++|..+++.+.
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         160 SALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHh
Confidence            9999998 9999999988643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-37  Score=202.95  Aligned_cols=171  Identities=31%  Similarity=0.553  Sum_probs=161.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      -+..+|++|+|+..+|||||+.++++..+...+..|.|.++..+++--..+.+++++|||+|+++|+.++.+++++++++
T Consensus        18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf   97 (193)
T KOG0093|consen   18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   97 (193)
T ss_pred             ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence            45678999999999999999999999999999999999999999887788899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |++||+++.+||..++.|...+...+-.+.|+++++||||+.+++.++.+.++.++.++|..||++||+.+.|++.+|..
T Consensus        98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~  177 (193)
T KOG0093|consen   98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER  177 (193)
T ss_pred             EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence            99999999999999999999998887788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 048059          167 IAKRLARVSPP  177 (198)
Q Consensus       167 l~~~~~~~~~~  177 (198)
                      ++..+-+...+
T Consensus       178 lv~~Ic~kmse  188 (193)
T KOG0093|consen  178 LVDIICDKMSE  188 (193)
T ss_pred             HHHHHHHHhhh
Confidence            99988776544

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.4e-36  Score=214.53  Aligned_cols=159  Identities=33%  Similarity=0.546  Sum_probs=144.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|.+|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++++..+++.++++++++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6999999999999999999999999888999998766 445667888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 048059           91 DISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQR----------EVPTEEGEQFSQENGM-FYIETSAKTAQ  158 (198)
Q Consensus        91 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (198)
                      |+++++||+.+ ..|+..+.... .+.|++|||||+|+.+.+          .+..+++..+++..++ .++++||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987764 579999999999996543          4788999999999998 69999999999


Q ss_pred             CHHHHHHHHHHHH
Q 048059          159 NINELFYEIAKRL  171 (198)
Q Consensus       159 ~i~~~~~~l~~~~  171 (198)
                      ||+++|+.+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.7e-36  Score=219.98  Aligned_cols=170  Identities=27%  Similarity=0.442  Sum_probs=151.1

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+++|++|||||||+.+|..+.+...+.||++.++. ..+.+++..+.+.||||+|++.|..+++.+++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            3446799999999999999999999999999889999987764 456788899999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 048059           86 AVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIE  151 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  151 (198)
                      +|+|||++++++|+.+ ..|+..+.... +..|+++|+||+|+..            .+.+..++++.+++.+++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999985 79999998765 5689999999999864            367889999999999999 6999


Q ss_pred             EccCCCC-CHHHHHHHHHHHHHhhCCC
Q 048059          152 TSAKTAQ-NINELFYEIAKRLARVSPP  177 (198)
Q Consensus       152 ~Sa~~~~-~i~~~~~~l~~~~~~~~~~  177 (198)
                      |||++|. |++++|..++..+.+...+
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~~~~  193 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNKLSP  193 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence            9999997 8999999999988775443

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.5e-36  Score=216.59  Aligned_cols=164  Identities=24%  Similarity=0.418  Sum_probs=144.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|+.|||||||+.++..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|+++|..+++.+++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            3589999999999999999999999988888899886653 445678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcc
Q 048059           89 VYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENG-MFYIETSA  154 (198)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa  154 (198)
                      |||++++.+|+.+. .|+..+.... .+.|++||+||.|+...            +.+..+++..+++.++ ++++++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999996 6888777654 57899999999999644            2467788999999998 59999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q 048059          155 KTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ++|.|++++|.+|++.+...
T Consensus       160 k~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999988653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=5.7e-36  Score=217.69  Aligned_cols=168  Identities=36%  Similarity=0.679  Sum_probs=151.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+ .+..+.+.+|||+|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888778888888887777766 4567899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |||++++++++.+..|+..+..... ...|++||+||+|+...+.+..+++..+++.++++++++||++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999877543 457889999999998777888889999999999999999999999999999999


Q ss_pred             HHHHHhhCCC
Q 048059          168 AKRLARVSPP  177 (198)
Q Consensus       168 ~~~~~~~~~~  177 (198)
                      .+.+.+....
T Consensus       162 ~~~~~~~~~~  171 (211)
T cd04111         162 TQEIYERIKR  171 (211)
T ss_pred             HHHHHHHhhc
Confidence            9988877544

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=5.3e-36  Score=218.72  Aligned_cols=164  Identities=34%  Similarity=0.516  Sum_probs=149.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      +||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++ ..+.+.||||+|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999998888999999888777777754 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGN---QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      ||++++++++.+..|+..+.....   ...|+++|+||+|+...+.+..++...+++.++++++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999887542   35689999999999877888888999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 048059          167 IAKRLARV  174 (198)
Q Consensus       167 l~~~~~~~  174 (198)
                      |...+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998865

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=4.5e-36  Score=211.09  Aligned_cols=165  Identities=37%  Similarity=0.672  Sum_probs=151.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999999888889999888777777788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||++++++++.+..|+..+........|+++++||+|+.+.+.+..+++..++..++++++++||++|.|++++|.+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887667789999999999987777788888999999999999999999999999999999


Q ss_pred             HHHHh
Q 048059          169 KRLAR  173 (198)
Q Consensus       169 ~~~~~  173 (198)
                      +++..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            98864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=3.7e-36  Score=210.28  Aligned_cols=160  Identities=37%  Similarity=0.607  Sum_probs=148.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||++|++++..++..++.++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999988888899988887778888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++++++.+..|+..+......+.|+++|+||.|+...+.+..+++..+++.++++++++||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999987765679999999999998888888899999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4.5e-36  Score=211.94  Aligned_cols=166  Identities=30%  Similarity=0.534  Sum_probs=148.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+++.++..+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999998888888887655 34466788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..+++.++++++++||++|.||+++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998988887643 36789999999999987788888999999999999999999999999999999999


Q ss_pred             HHHHhhCC
Q 048059          169 KRLARVSP  176 (198)
Q Consensus       169 ~~~~~~~~  176 (198)
                      ..+.+...
T Consensus       161 ~~~~~~~~  168 (172)
T cd04141         161 REIRRKES  168 (172)
T ss_pred             HHHHHhcc
Confidence            98886443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.4e-35  Score=215.62  Aligned_cols=169  Identities=39%  Similarity=0.698  Sum_probs=154.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||+|++.+..++..++.++|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            34699999999999999999999998888778888888887778888888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++++++.+..|+..+........|+++++||+|+...+.+..+++.++++.++++++++||+++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988877666778999999999998877888899999999999999999999999999999999


Q ss_pred             HHHHHhhCC
Q 048059          168 AKRLARVSP  176 (198)
Q Consensus       168 ~~~~~~~~~  176 (198)
                      ++.+.+...
T Consensus       164 ~~~~~~~~~  172 (210)
T PLN03108        164 AAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHhh
Confidence            999887544

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=8.7e-36  Score=209.25  Aligned_cols=163  Identities=31%  Similarity=0.585  Sum_probs=148.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+||++|++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887776666666777889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++++++.+..|+..+........|+++++||+|+...+.+..++...++..++++++++||++|.|++++|++|...
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766678999999999998777777788888999999999999999999999999999987


Q ss_pred             HHh
Q 048059          171 LAR  173 (198)
Q Consensus       171 ~~~  173 (198)
                      +.+
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9e-37  Score=201.25  Aligned_cols=169  Identities=40%  Similarity=0.661  Sum_probs=160.6

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .-+.-+|++++|+.|+|||+|+.++..+++......|+|.++..+.++++++.++++||||+|+++|++....|++++-+
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG   84 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG   84 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      .++|||+++.++|+.+..|+...+..+.+++.+++++||.|+..+++++..++..|+.+..+.++++||++|+|+++.|-
T Consensus        85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl  164 (214)
T KOG0086|consen   85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  164 (214)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence            99999999999999999999999999989999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhh
Q 048059          166 EIAKRLARV  174 (198)
Q Consensus       166 ~l~~~~~~~  174 (198)
                      ...+.+..+
T Consensus       165 ~c~~tIl~k  173 (214)
T KOG0086|consen  165 KCARTILNK  173 (214)
T ss_pred             HHHHHHHHH
Confidence            877766543

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=4.8e-36  Score=212.59  Aligned_cols=161  Identities=27%  Similarity=0.481  Sum_probs=144.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      ++||+++|++|||||||++++.++.+...+.||.+..+ ...+.+++..+.+.+|||+|++.|..+.+.+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999999888889987765 45677888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEccC
Q 048059           90 YDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIETSAK  155 (198)
Q Consensus        90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (198)
                      ||++++++|+.+ ..|+..+.... ++.|+++||||+|+..            .+.+..+++.++++.+++ +|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 79999998875 5789999999999854            345888999999999997 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 048059          156 TAQN-INELFYEIAKRLA  172 (198)
Q Consensus       156 ~~~~-i~~~~~~l~~~~~  172 (198)
                      +|+| ++++|..+++.++
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.5e-35  Score=208.22  Aligned_cols=163  Identities=38%  Similarity=0.687  Sum_probs=150.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||+||++++..++..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999888888888888888777788888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      ||++++++++.+..|+..+........|+++++||+|+...+.+..+++..+++..+++++++||++|.|++++|.+|.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999998766567899999999999877778888899999999999999999999999999999998


Q ss_pred             HHH
Q 048059          170 RLA  172 (198)
Q Consensus       170 ~~~  172 (198)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=3.8e-35  Score=211.00  Aligned_cols=185  Identities=37%  Similarity=0.606  Sum_probs=154.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      +||+|+|++|+|||||+++|+++.+.. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988764 5778888887777888888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC----CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS----QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      ||++++.+++.+..|+..+.... .+.|+++|+||+|+..    .+.+..+++..++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999887753 4689999999999853    234556778888888899999999999999999999


Q ss_pred             HHHHHHHhhCCCC---CCCCCCCCCCCCCCCCCc
Q 048059          166 EIAKRLARVSPPK---RSGINLNPETPERKGFCC  196 (198)
Q Consensus       166 ~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~cc  196 (198)
                      +|.+.+.+....+   .....+..+..++..+||
T Consensus       160 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (193)
T cd04118         160 KVAEDFVSRANNQMNTEKGVDLGQKKNSYFYSCC  193 (193)
T ss_pred             HHHHHHHHhcccccCCCCccccCCcCCCCCCCCC
Confidence            9999998764433   112223333334666677

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.7e-35  Score=210.47  Aligned_cols=166  Identities=28%  Similarity=0.522  Sum_probs=149.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC----------CcEEEEEEEeCCCchhhcccchh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS----------EATVKFDIWDTAGQERYHSLAPM   78 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~   78 (198)
                      +.+||+++|++|||||||++++.++.+...+.++.+.++....+.+.          +..+.+.+||++|++.+..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            46999999999999999999999999988888998887766655543          45688999999999999999999


Q ss_pred             hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059           79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA  157 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (198)
                      +++++|++++|||++++++++.+..|+..+.... .++.|+++|+||+|+...+.+..+++..++...+++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999999999999999999987753 357899999999999877788888899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 048059          158 QNINELFYEIAKRLARV  174 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~~  174 (198)
                      .|++++|++|++.+.++
T Consensus       163 ~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         163 TNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.4e-35  Score=207.52  Aligned_cols=161  Identities=38%  Similarity=0.722  Sum_probs=153.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      ||+++|++|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ++++++++.+..|+..+........|++|++||.|+...+.+..++++.+++.++++|+++||+++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998776789999999999988889999999999999999999999999999999999999987


Q ss_pred             H
Q 048059          172 A  172 (198)
Q Consensus       172 ~  172 (198)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.8e-35  Score=210.46  Aligned_cols=167  Identities=23%  Similarity=0.425  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|+|||||++++.++.+...+.+|.+.++....+.+++..+.+.+||++|++.+..+++.+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999988889999998887788888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC-----CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS-----QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      |++++++++.+..|+..+........| ++|+||+|+..     ......+++..+++..+++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998876555567 57899999842     112234677888888999999999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q 048059          166 EIAKRLARVSPPK  178 (198)
Q Consensus       166 ~l~~~~~~~~~~~  178 (198)
                      ++.+.+.+....+
T Consensus       160 ~l~~~l~~~~~~~  172 (182)
T cd04128         160 IVLAKAFDLPLTI  172 (182)
T ss_pred             HHHHHHHhcCCCh
Confidence            9999998765544

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2.1e-35  Score=207.48  Aligned_cols=163  Identities=27%  Similarity=0.583  Sum_probs=149.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++|+++.+...+.++.+.++....+...+..+.+.+|||+|++.+..++..++.++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888999998888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCC-----CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGN-----QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      |++++.+++.+..|+..+.....     .+.|+++|+||+|+...+....++...++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999987643     4689999999999976667778888889998999999999999999999999


Q ss_pred             HHHHHHHh
Q 048059          166 EIAKRLAR  173 (198)
Q Consensus       166 ~l~~~~~~  173 (198)
                      +|++.+.+
T Consensus       161 ~l~~~l~~  168 (168)
T cd04119         161 TLFSSIVD  168 (168)
T ss_pred             HHHHHHhC
Confidence            99988753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=1.8e-35  Score=211.64  Aligned_cols=179  Identities=27%  Similarity=0.480  Sum_probs=151.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++... +... +..+.+.+|||+|++.+..++..++.++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999998888888877766443 4444 6788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 048059           90 YDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ----REVPTEEGEQFSQENGM-FYIETSAKTAQNINEL  163 (198)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  163 (198)
                      ||++++++++.+. .|+..+... .++.|+++|+||+|+...    +.+..+++.+++..+++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999985 588777654 357899999999998543    35667888999999998 9999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCcC
Q 048059          164 FYEIAKRLARVSPPKRSGINLNPETPERKGFCCL  197 (198)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  197 (198)
                      |..+++.+.......      +.+...++..|+|
T Consensus       159 f~~l~~~~~~~~~~~------~~~~~~~~~~c~~  186 (187)
T cd04132         159 FDTAIEEALKKEGKA------IFKKKKKKRKCVV  186 (187)
T ss_pred             HHHHHHHHHhhhhhh------hhccCCCCccccc
Confidence            999999988766544      3444557777765

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4.3e-35  Score=213.37  Aligned_cols=166  Identities=23%  Similarity=0.423  Sum_probs=144.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+|+|++|||||||+.+|..+.+...+.||.+.++. ..+.+++..+.+.||||+|++.|..+++.++.++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999999999998889999887764 5667888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccC
Q 048059           90 YDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAK  155 (198)
Q Consensus        90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (198)
                      ||++++++|+.+ ..|...+... .++.|++||+||+|+...            ..+..+++..+++..++ +|+||||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            999999999999 4677666554 467899999999998542            24778899999999996 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHHhhCCC
Q 048059          156 TAQN-INELFYEIAKRLARVSPP  177 (198)
Q Consensus       156 ~~~~-i~~~~~~l~~~~~~~~~~  177 (198)
                      ++.+ |+++|...+...+.+..+
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~~~~  181 (222)
T cd04173         159 SSERSVRDVFHVATVASLGRGHR  181 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhccCC
Confidence            9885 999999999987775444

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-35  Score=193.01  Aligned_cols=194  Identities=39%  Similarity=0.636  Sum_probs=174.9

Q ss_pred             CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059            4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA   83 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   83 (198)
                      |.+-..-+|-+++|+-|+|||+|+..++..++......++|+.+-...+.+.+..+++++|||+|+++++.....|++++
T Consensus         5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga   84 (215)
T KOG0097|consen    5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   84 (215)
T ss_pred             ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      -+.++|||++.+.++..+..|+...++..+++..+++++||.|++.++.+..+++++|+.++++.++++||++|.|+++.
T Consensus        85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen   85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC-----------------CCCCCCCCCCCCCCCCCcC
Q 048059          164 FYEIAKRLARVSPPK-----------------RSGINLNPETPERKGFCCL  197 (198)
Q Consensus       164 ~~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~cc~  197 (198)
                      |-...+++++.-.+.                 .+.-++.++.+.++.+|-|
T Consensus       165 fle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c  215 (215)
T KOG0097|consen  165 FLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence            999888888764442                 2223344455557777865

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.2e-36  Score=200.47  Aligned_cols=171  Identities=37%  Similarity=0.668  Sum_probs=161.7

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+++|..-+|||||+-++..++|......|+-..+..+.+++.+....+.||||+|+++|..+-+.|++++++
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG   88 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG   88 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence            35668999999999999999999999999999998988888888999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +++|||++|..||+.+..|...++...+...-++||+||+|+++++.++.+++..++..-|+.|+++||+++.||.++|.
T Consensus        89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe  168 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE  168 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence            99999999999999999999999998778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCC
Q 048059          166 EIAKRLARVSP  176 (198)
Q Consensus       166 ~l~~~~~~~~~  176 (198)
                      .|..++.+...
T Consensus       169 ~Lt~~MiE~~s  179 (218)
T KOG0088|consen  169 SLTAKMIEHSS  179 (218)
T ss_pred             HHHHHHHHHhh
Confidence            99998887663

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=6.2e-35  Score=204.83  Aligned_cols=163  Identities=41%  Similarity=0.723  Sum_probs=149.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..+++.++++++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            35899999999999999999999998888888999988888888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999887666789999999999987777788889999998899999999999999999999998


Q ss_pred             HHH
Q 048059          169 KRL  171 (198)
Q Consensus       169 ~~~  171 (198)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.3e-34  Score=203.87  Aligned_cols=165  Identities=41%  Similarity=0.722  Sum_probs=151.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+|+|++|||||||++++.++.+...+.++.+.++....+...+....+.+||++|++++..++..+++++|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999988888888888888877888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||++++++++.+..|+..+.....++.|+++|+||.|+...+.+..+++..++...+++++++||+++.|++++|.++.
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887667899999999999987777888889999999999999999999999999999999


Q ss_pred             HHHHh
Q 048059          169 KRLAR  173 (198)
Q Consensus       169 ~~~~~  173 (198)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T cd01866         163 KEIYE  167 (168)
T ss_pred             HHHHh
Confidence            88765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=8.6e-35  Score=208.40  Aligned_cols=164  Identities=30%  Similarity=0.493  Sum_probs=141.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      .||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..++.++|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999988888888876653 44566777889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEEccCC
Q 048059           91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR------------EVPTEEGEQFSQENG-MFYIETSAKT  156 (198)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (198)
                      |++++++|+.+. .|+..+.... .+.|+++|+||+|+...+            .+..+++..++...+ ++++++||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 6888887654 578999999999986543            345677788888776 6899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhCC
Q 048059          157 AQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~~~  176 (198)
                      |.|++++|.+|.+.+....+
T Consensus       159 ~~~v~e~f~~l~~~~~~~~~  178 (189)
T cd04134         159 NRGVNEAFTEAARVALNVRP  178 (189)
T ss_pred             CCCHHHHHHHHHHHHhcccc
Confidence            99999999999998875444

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=8.2e-35  Score=212.65  Aligned_cols=165  Identities=31%  Similarity=0.513  Sum_probs=147.3

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      +...+||+++|.+|||||||+++++.+.+...+.++.+.++....+...+..+.+.+|||+|++.+..++..+++++|++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            46789999999999999999999999998888999999888877777777889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +.+..++. .+++..+++++++||++|.|++++|.+
T Consensus        90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071         90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence            99999999999999999999998764 5789999999999853 33444444 777788999999999999999999999


Q ss_pred             HHHHHHhh
Q 048059          167 IAKRLARV  174 (198)
Q Consensus       167 l~~~~~~~  174 (198)
                      |++.+.+.
T Consensus       167 l~~~~~~~  174 (219)
T PLN03071        167 LARKLAGD  174 (219)
T ss_pred             HHHHHHcC
Confidence            99998765

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=8.5e-35  Score=205.90  Aligned_cols=159  Identities=25%  Similarity=0.430  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|.+|+|||||+.++..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999988888899887664 34567788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEccCC
Q 048059           91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENG-MFYIETSAKT  156 (198)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  156 (198)
                      |++++++++.+. .|+..+.... ++.|++||+||+|+...            +.+..+++..+++..+ +.++++||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999996 5888887654 56899999999998543            5677888899998887 6999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 048059          157 AQNINELFYEIAKRL  171 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~  171 (198)
                      |.|++++|+.++..+
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.4e-34  Score=203.14  Aligned_cols=162  Identities=40%  Similarity=0.674  Sum_probs=146.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988887788888877777777888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+...+....+.+..+++..++ .++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876667789999999999987777778888999998886 68999999999999999999


Q ss_pred             HHH
Q 048059          168 AKR  170 (198)
Q Consensus       168 ~~~  170 (198)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.3e-34  Score=202.35  Aligned_cols=160  Identities=41%  Similarity=0.712  Sum_probs=147.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888877777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++++++.+..|+..+.....++.|+++++||.|+...+.+..+++..++...++.++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877666789999999999998777888889999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-35  Score=195.29  Aligned_cols=171  Identities=40%  Similarity=0.683  Sum_probs=161.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ..-+||+++|+.|+|||+|+++++.+.++.....|+|.++..+++.+++..+++++|||+|++++++....|++.++++|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++...+|+-+..|+..+..+++.++.-++|+||.|+.+.+++....+++|+......|+++||++.+|++.+|..+
T Consensus        85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~  164 (213)
T KOG0095|consen   85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL  164 (213)
T ss_pred             EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence            99999999999999999999999988888889999999999999999999999999988899999999999999999999


Q ss_pred             HHHHHhhCCCC
Q 048059          168 AKRLARVSPPK  178 (198)
Q Consensus       168 ~~~~~~~~~~~  178 (198)
                      ...+...-+.+
T Consensus       165 a~rli~~ar~~  175 (213)
T KOG0095|consen  165 ACRLISEARQN  175 (213)
T ss_pred             HHHHHHHHHhc
Confidence            88776654443

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=9.7e-35  Score=203.34  Aligned_cols=161  Identities=31%  Similarity=0.595  Sum_probs=142.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||++++..+.+...+.++.+. .....+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            379999999999999999999998887777787763 3355667788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++.++++++++||++|.|++++|++|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998887753 35789999999999977667777788888888889999999999999999999998


Q ss_pred             HHH
Q 048059          169 KRL  171 (198)
Q Consensus       169 ~~~  171 (198)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.1e-34  Score=203.36  Aligned_cols=162  Identities=33%  Similarity=0.627  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|.+|||||||++++..+.+...+.++++..+ ...+.+.+..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998887777778877655 35567778888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ||++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..++...+++.++++++++||++|.|++++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999887653 36789999999999987777777778888888999999999999999999999998


Q ss_pred             HHHH
Q 048059          169 KRLA  172 (198)
Q Consensus       169 ~~~~  172 (198)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8664

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4e-34  Score=200.92  Aligned_cols=160  Identities=31%  Similarity=0.551  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+...+..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888899888877777777788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++++++.+..|+..+..... +.|+++|+||+|+.. +.+. .....+++..+++++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999988754 799999999999863 3333 34556777788899999999999999999999998


Q ss_pred             HHh
Q 048059          171 LAR  173 (198)
Q Consensus       171 ~~~  173 (198)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=2.8e-34  Score=200.82  Aligned_cols=159  Identities=30%  Similarity=0.549  Sum_probs=144.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC--CcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS--EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      +||+++|++|+|||||+++++++.+...+.++.+.++....+.+.  +..+.+.+||+||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888888888888766666666  778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||++++++++.+..|+..+.... .+.|+++|+||.|+..++.+..+++..+++.++++++++||++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999887654 5789999999999987777888889999999999999999999999999999987


Q ss_pred             HH
Q 048059          169 KR  170 (198)
Q Consensus       169 ~~  170 (198)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            54

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=205.86  Aligned_cols=169  Identities=37%  Similarity=0.642  Sum_probs=146.6

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|+++.+ ..+.++.+.++....+.+++..+.+.||||||++++..++..+++++|+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            445679999999999999999999998776 4567888887777777788888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHH-HHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059           86 AVVVYDISNMDTFNRANK-LVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      +|+|||++++++++.+.. |...+.... ....|+++|+||+|+...+.+..++...++...++.++++||+++.|++++
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC  168 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999965 655555432 345789999999999877777788888899999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 048059          164 FYEIAKRLARVS  175 (198)
Q Consensus       164 ~~~l~~~~~~~~  175 (198)
                      |++|...+.+..
T Consensus       169 ~~~l~~~~~~~~  180 (211)
T PLN03118        169 FEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHhhh
Confidence            999999887754

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=5.9e-34  Score=200.76  Aligned_cols=162  Identities=28%  Similarity=0.550  Sum_probs=144.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      ||+++|.+|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+|||+|++++..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988899999988877778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQRE--VPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ++++++++.+..|+..+... .....|+++|+||.|+...+.  ...+++..++++++++++++||++|.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999988664 334578999999999865433  345677888888899999999999999999999999


Q ss_pred             HHHHh
Q 048059          169 KRLAR  173 (198)
Q Consensus       169 ~~~~~  173 (198)
                      ..+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88765

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=5.7e-34  Score=199.58  Aligned_cols=163  Identities=45%  Similarity=0.771  Sum_probs=149.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999998887778888888877777888888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++.+++.+..|+..+........|+++++||+|+...+....+.+..+++..+++++++|++++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888766789999999999987767777888899999999999999999999999999999998


Q ss_pred             HHh
Q 048059          171 LAR  173 (198)
Q Consensus       171 ~~~  173 (198)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            865

Rab GTPases are implicated in vesicle trafficking.

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=4e-34  Score=200.36  Aligned_cols=161  Identities=34%  Similarity=0.624  Sum_probs=141.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      ++||+++|.+|||||||++++..+.+...+.++.+ ++....+.+++..+.++||||+|++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999988877777765 44456677788888899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ||++++++++++..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999998887753 36789999999999977667777778888888889999999999999999999998


Q ss_pred             HHH
Q 048059          169 KRL  171 (198)
Q Consensus       169 ~~~  171 (198)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4e-34  Score=202.32  Aligned_cols=159  Identities=25%  Similarity=0.442  Sum_probs=139.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|.+|||||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+++.++.++|++|+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            37999999999999999999999998888888876443 44556788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccC
Q 048059           90 YDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAK  155 (198)
Q Consensus        90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (198)
                      ||++++++|+.+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..++++++. ++++|||+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999995 6888777654 57899999999998542            35778999999999985 99999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 048059          156 TAQNINELFYEIAKR  170 (198)
Q Consensus       156 ~~~~i~~~~~~l~~~  170 (198)
                      +|.|++++|+.+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=9.2e-34  Score=199.83  Aligned_cols=163  Identities=36%  Similarity=0.585  Sum_probs=145.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999888888888888887777788888999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQG----NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNIN  161 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  161 (198)
                      ++|||++++++++.+..|+..+....    ..+.|+++++||.|+. .+.+..++++++++.+++ +++++||++|.|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            99999999999999999998876643    2568999999999986 556677889999998884 89999999999999


Q ss_pred             HHHHHHHHH
Q 048059          162 ELFYEIAKR  170 (198)
Q Consensus       162 ~~~~~l~~~  170 (198)
                      ++|+++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=6.3e-34  Score=199.78  Aligned_cols=158  Identities=30%  Similarity=0.501  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++++++.+...+.++.+..+ ...+......+.+.+|||+|++++..++..++..++++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777778776554 444556677889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |++++++++.+..|+..+....   ..+.|+++|+||+|+...+++..+++..++..++++++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999988887643   2578999999999997767777888888998899999999999999999999998


Q ss_pred             HH
Q 048059          168 AK  169 (198)
Q Consensus       168 ~~  169 (198)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.2e-33  Score=197.47  Aligned_cols=160  Identities=44%  Similarity=0.746  Sum_probs=146.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||++++++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999888888888888888888888887889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++++++.+..|+..+......+.|+++++||+|+...+....++...+++..+++++++||+++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999877655578999999999997667777888899998889999999999999999999999874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.2e-33  Score=198.06  Aligned_cols=161  Identities=34%  Similarity=0.635  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..++.++|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888777777766433 455667778899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      |++++++++.+..|+..+.+.. ..+.|+++++||+|+...+....+++..+++..+++++++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999988887643 356899999999999877777778888899989999999999999999999999998


Q ss_pred             HHH
Q 048059          170 RLA  172 (198)
Q Consensus       170 ~~~  172 (198)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=2.6e-33  Score=196.13  Aligned_cols=162  Identities=60%  Similarity=0.982  Sum_probs=148.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      ++||+++|++|||||||+++|+++.+.....++.+..+....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999988777788888888788888888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      ||++++++++.+..|+..+........|+++++||.|+...+....++...++...+++++++||++|.|+.++|++|+.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998876677999999999998777777788889999999999999999999999999999998


Q ss_pred             HH
Q 048059          170 RL  171 (198)
Q Consensus       170 ~~  171 (198)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.8e-33  Score=198.45  Aligned_cols=162  Identities=36%  Similarity=0.642  Sum_probs=146.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-ccchhhhcCCCeEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-SLAPMYYRGAAAAVV   88 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~   88 (198)
                      .+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .+++.+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999988887888888888877888888888999999999999886 578899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC---CCCHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT---AQNINELF  164 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~  164 (198)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999887753 36789999999999988888888889999999999999999999   88999999


Q ss_pred             HHHHHHH
Q 048059          165 YEIAKRL  171 (198)
Q Consensus       165 ~~l~~~~  171 (198)
                      .++++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=2.2e-33  Score=196.04  Aligned_cols=160  Identities=33%  Similarity=0.602  Sum_probs=139.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..++++++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999888777778877554 45566777788899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ||+++..+++.+..|+..+.... ..+.|+++|+||+|+.. +....+++..+++..+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988887753 35789999999999865 45566778888888899999999999999999999998


Q ss_pred             HHH
Q 048059          169 KRL  171 (198)
Q Consensus       169 ~~~  171 (198)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=3.6e-33  Score=195.22  Aligned_cols=160  Identities=29%  Similarity=0.473  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|.+|||||||++++..+.+...+.++.+.+.......+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777777777776777778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++.+++.+..|+..+.... .+.|+++++||+|+...   ..++...++...+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999987653 56899999999998432   2345566777788999999999999999999999988


Q ss_pred             HHhh
Q 048059          171 LARV  174 (198)
Q Consensus       171 ~~~~  174 (198)
                      +.+.
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            7654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-36  Score=198.04  Aligned_cols=170  Identities=28%  Similarity=0.488  Sum_probs=155.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC---------CcEEEEEEEeCCCchhhcccchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS---------EATVKFDIWDTAGQERYHSLAPM   78 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~~~   78 (198)
                      ++-+|.+.+|++|+||||++.+++.+++......|.|.++..+.+.+.         +..+.+++|||+|++++++++.+
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            345788999999999999999999999999999999999887766542         34578999999999999999999


Q ss_pred             hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059           79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA  157 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (198)
                      +++.|-+++++||+++.+||-++.+|+..++.++. .+.-+++++||+|++..+.+..+++.+++.++++|||++||-+|
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg  166 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG  166 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence            99999999999999999999999999999998754 56679999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhCCC
Q 048059          158 QNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~~~  177 (198)
                      .|+.+..+.|+..++++-.+
T Consensus       167 ~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  167 TNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             cCHHHHHHHHHHHHHHHHHH
Confidence            99999999999988877654

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=3.9e-33  Score=195.41  Aligned_cols=161  Identities=31%  Similarity=0.556  Sum_probs=141.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ .....+.+..+.+.+|||||++++..++..++.++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            58999999999999999999999887777777766444 44456777788999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ||++++++++.+..|+..+... ...+.|+++++||+|+...+.+..++...+++..+++++++||++|.|++++|++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999888764 335789999999999977777777788889988899999999999999999999998


Q ss_pred             HHH
Q 048059          169 KRL  171 (198)
Q Consensus       169 ~~~  171 (198)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=4e-33  Score=200.68  Aligned_cols=167  Identities=25%  Similarity=0.318  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchhhhcC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPMYYRG   82 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~   82 (198)
                      +||+|+|.+|||||||++++.++.+...+.|+.+.+.....+.+++..+.+.+|||||.+.+..        .....+.+
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999988888888887666666677788889999999999754321        12345789


Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccCCCC
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQ-ENGMFYIETSAKTAQ  158 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  158 (198)
                      +|++|+|||++++++++.+..|++.+....   ..+.|+++|+||+|+...+.+..++...++. .++++++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887753   4678999999999997766667777777754 568999999999999


Q ss_pred             CHHHHHHHHHHHHHhhCCC
Q 048059          159 NINELFYEIAKRLARVSPP  177 (198)
Q Consensus       159 ~i~~~~~~l~~~~~~~~~~  177 (198)
                      |++++|+.+++.+..+-+.
T Consensus       161 ~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         161 HILLLFKELLISATTRGRS  179 (198)
T ss_pred             CHHHHHHHHHHHhhccCCC
Confidence            9999999999988866554

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=5.3e-33  Score=194.78  Aligned_cols=160  Identities=27%  Similarity=0.455  Sum_probs=141.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG--QFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +||+++|++|||||||++++..+  .+...+.++.+.++....+.+. +..+.+.+|||+|++.+..++..++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  5667788888888766666664 56789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++++++.+..|++.+.... ...|+++|+||+|+....++.......++...+++++++||+++.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999988764 568999999999997777777777778888889999999999999999999999


Q ss_pred             HHHH
Q 048059          168 AKRL  171 (198)
Q Consensus       168 ~~~~  171 (198)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.7e-33  Score=200.67  Aligned_cols=156  Identities=28%  Similarity=0.532  Sum_probs=140.4

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCCh
Q 048059           16 LGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM   95 (198)
Q Consensus        16 ~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   95 (198)
                      +|.+|||||||+++++.+.+...+.+|++.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888889999888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059           96 DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus        96 ~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      .+++.+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.||+++|.+|+..+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998864 5789999999999854 3444443 467888899999999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=2.2e-32  Score=191.02  Aligned_cols=161  Identities=42%  Similarity=0.759  Sum_probs=143.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||++|++.+..+++.++.++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998877666667666666666777777788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++++++.+..|+..+......+.|+++++||+|+...+.+..++..++++..+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888765678999999999998777777788888888899999999999999999999999876


Q ss_pred             H
Q 048059          171 L  171 (198)
Q Consensus       171 ~  171 (198)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=7.1e-33  Score=198.74  Aligned_cols=158  Identities=23%  Similarity=0.343  Sum_probs=129.8

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHHhCC-----CCCCCCCCcce-eEEEEE--------EEeCCcEEEEEEEeCCCchhhcc
Q 048059           10 QAKLVLLGDMGTGKTSLAL-RFIKGQ-----FYDQQEPTIGA-AFFTQI--------LSLSEATVKFDIWDTAGQERYHS   74 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~   74 (198)
                      .+||+++|.+|||||||+. ++.++.     +...+.||++. +.....        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 555432     34556777752 222221        25678889999999999875  3


Q ss_pred             cchhhhcCCCeEEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCC-------------------CCCCC
Q 048059           75 LAPMYYRGAAAAVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDS-------------------QREVP  134 (198)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~-------------------~~~~~  134 (198)
                      +...+++++|++|+|||++++.+|+.+. .|+..+.... ...|+++|+||+|+..                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999996 6988887764 5689999999999863                   46788


Q ss_pred             HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059          135 TEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      .++++.++++++++|++|||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=2.7e-32  Score=192.55  Aligned_cols=165  Identities=39%  Similarity=0.662  Sum_probs=145.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+..++..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999998887777788888777777788888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFY  165 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~  165 (198)
                      |++++++++.+..|...+.....    .+.|+++|+||+|+...+....++...+++..+ ++++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999888887655432    368999999999997666667788888888887 7999999999999999999


Q ss_pred             HHHHHHHhhC
Q 048059          166 EIAKRLARVS  175 (198)
Q Consensus       166 ~l~~~~~~~~  175 (198)
                      ++.+.+.+..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999888764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=9.5e-33  Score=195.34  Aligned_cols=159  Identities=27%  Similarity=0.477  Sum_probs=138.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEEC
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI   92 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   92 (198)
                      |+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++.++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999998877777776554 34566778888999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 048059           93 SNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAKTAQ  158 (198)
Q Consensus        93 ~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (198)
                      +++++++.+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..+++..++ +++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 6888887754 57899999999998642            23777888999999987 99999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 048059          159 NINELFYEIAKRLAR  173 (198)
Q Consensus       159 ~i~~~~~~l~~~~~~  173 (198)
                      |++++|+.+++.+..
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=8.6e-33  Score=194.66  Aligned_cols=164  Identities=21%  Similarity=0.257  Sum_probs=141.6

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ...+||+++|.+|||||||+++++++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35699999999999999999999999988 78889988887777777888888899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFY  165 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  165 (198)
                      ++|||++++++++.+..|+..+...  .+.|+++|+||+|+...+.....+..++++.+++ .++++||++|.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999998888765332  4689999999999965554444556777888887 479999999999999999


Q ss_pred             HHHHHHHh
Q 048059          166 EIAKRLAR  173 (198)
Q Consensus       166 ~l~~~~~~  173 (198)
                      .|.+.+..
T Consensus       160 ~l~~~~~~  167 (169)
T cd01892         160 KLATAAQY  167 (169)
T ss_pred             HHHHHhhC
Confidence            99998763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=3.3e-32  Score=190.22  Aligned_cols=159  Identities=42%  Similarity=0.714  Sum_probs=142.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++|++..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887778888888877777777888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      |++++.+++.+..|+..+.... ....|+++++||+|+. .+....++...++...+++++++||++|.|++++++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999999999888764 4678999999999986 4455677888999999999999999999999999999987


Q ss_pred             H
Q 048059          170 R  170 (198)
Q Consensus       170 ~  170 (198)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=1.7e-32  Score=203.14  Aligned_cols=160  Identities=28%  Similarity=0.483  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|.+|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|++.+..++..++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988877888876 444566778888899999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh---------CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 048059           91 DISNMDTFNRANKLVQELQRQ---------GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNI  160 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  160 (198)
                      |++++++|+.+..|++.+...         ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888653         235789999999999977677777888877764 4688999999999999


Q ss_pred             HHHHHHHHHHH
Q 048059          161 NELFYEIAKRL  171 (198)
Q Consensus       161 ~~~~~~l~~~~  171 (198)
                      +++|++|...+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=3.3e-32  Score=191.59  Aligned_cols=162  Identities=28%  Similarity=0.578  Sum_probs=143.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..+++.++.+++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            37899999999999999999999888777778777554 56667778888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      ||++++++++.+..|...+.... ..+.|+++++||.|+...+....++...+++.++ ++++++||+++.|++++|.++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999988887642 3578999999999998777777788888888887 799999999999999999999


Q ss_pred             HHHHH
Q 048059          168 AKRLA  172 (198)
Q Consensus       168 ~~~~~  172 (198)
                      +..+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            98664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=2.6e-32  Score=190.04  Aligned_cols=153  Identities=21%  Similarity=0.394  Sum_probs=130.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+.+++.+.+...+.++ +..+ ...+.+++..+.+.+||++|++.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988876665554 3333 45677888888999999999975     34678899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLD--SQREVPTEEGEQFSQEN-GMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |++++.+|+.+..|+..+..... ...|+++|+||.|+.  ..+.+..+++..+++.. ++.|++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987643 668999999999985  35678888888999876 589999999999999999999


Q ss_pred             HHHH
Q 048059          167 IAKR  170 (198)
Q Consensus       167 l~~~  170 (198)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=2.3e-32  Score=191.86  Aligned_cols=160  Identities=29%  Similarity=0.523  Sum_probs=137.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-hcccchhhhcCCCeEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-YHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~   90 (198)
                      ||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||+||++. ....+..+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998877666767765444 45567788888999999999885 3455778899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC-CCHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQG--NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA-QNINELFYEI  167 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l  167 (198)
                      |++++++++.+..|+..+....  ..+.|+++|+||+|+...+.+..+++..+++..+++++++||++| .|++++|+.|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887753  357899999999999777777888889999999999999999999 4999999999


Q ss_pred             HHHHH
Q 048059          168 AKRLA  172 (198)
Q Consensus       168 ~~~~~  172 (198)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=5.9e-32  Score=191.19  Aligned_cols=157  Identities=25%  Similarity=0.464  Sum_probs=136.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|+|||||+.++.++.+...+.++. .+.....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988888777775 3444556777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059           91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIETSAKT  156 (198)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (198)
                      |++++++++.+. .|+..+.... ...|+++++||.|+..            ++.+..+++..+++..++ +++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999984 6888887643 4689999999999853            456778889999999887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 048059          157 AQNINELFYEIAK  169 (198)
Q Consensus       157 ~~~i~~~~~~l~~  169 (198)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=6.2e-32  Score=191.17  Aligned_cols=159  Identities=26%  Similarity=0.456  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999888777777765443 445667888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059           91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAKT  156 (198)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (198)
                      |++++++++.+. .|+..+... ..+.|+++++||.|+...            +.+..+++..+++..++ +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999885 688877765 577899999999998532            35677888999999986 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 048059          157 AQNINELFYEIAKRL  171 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~  171 (198)
                      |.|++++|+.++..+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=1.8e-31  Score=187.95  Aligned_cols=164  Identities=40%  Similarity=0.694  Sum_probs=145.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...++|+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            44699999999999999999999988877777788887777777788888889999999999999999899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++.+++.+..|+..+........|+++++||+|+...+++..+....+.+...++++++||++|.|++++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999988877665678999999999998777777777788888788899999999999999999999


Q ss_pred             HHHH
Q 048059          168 AKRL  171 (198)
Q Consensus       168 ~~~~  171 (198)
                      ...+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=9.3e-32  Score=196.82  Aligned_cols=163  Identities=28%  Similarity=0.385  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhc-CCCeEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYR-GAAAAVV   88 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~   88 (198)
                      +||+++|++|||||||+++|..+.+. ..+.++.+.++....+.+.+....+.+||++|++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888776 56667666566677778888889999999999972  23345566 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887753 3578999999999998777788888888998889999999999999999999999


Q ss_pred             HHHHHhhC
Q 048059          168 AKRLARVS  175 (198)
Q Consensus       168 ~~~~~~~~  175 (198)
                      +..+....
T Consensus       159 ~~~~~~~~  166 (221)
T cd04148         159 VRQIRLRR  166 (221)
T ss_pred             HHHHHhhh
Confidence            99886443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00154 Rab Rab family

Probab=100.00  E-value=1e-31  Score=186.61  Aligned_cols=158  Identities=48%  Similarity=0.840  Sum_probs=145.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||+..+...+..+++++|++++||
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |++++++++.+..|+..+........|+++++||+|+........++...++...+++++++||+++.|+++++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999999887657789999999999975666778889999998899999999999999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=2.3e-31  Score=190.38  Aligned_cols=173  Identities=31%  Similarity=0.529  Sum_probs=143.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      .||+|+|++|+|||||++++..+.+...+.++....+. ..+.+.+..+.+.+||++|++.+....+.++..+++++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            58999999999999999999988777666666655443 34556777788999999999988887778889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 048059           91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDS----------QREVPTEEGEQFSQENGM-FYIETSAKTAQ  158 (198)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (198)
                      |+++.++++.+. .|+..+.... ++.|+++|+||+|+..          .+.+..+++..+++..++ +++++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999996 6888887654 4699999999999853          344556788889999885 89999999999


Q ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCcC
Q 048059          159 NINELFYEIAKRLARVSPPKRSGINLNPETPERKGFCCL  197 (198)
Q Consensus       159 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  197 (198)
                      |++++|+++.+.+....+            .+-.-+||+
T Consensus       160 ~v~~~f~~l~~~~~~~~~------------~~~~~~~~~  186 (187)
T cd04129         160 GVDDVFEAATRAALLVRK------------SEPGAGCCI  186 (187)
T ss_pred             CHHHHHHHHHHHHhcccC------------cccccCccc
Confidence            999999999987755444            234678886

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=9.6e-34  Score=182.97  Aligned_cols=161  Identities=38%  Similarity=0.678  Sum_probs=150.2

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC
Q 048059           15 LLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS   93 (198)
Q Consensus        15 v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   93 (198)
                      ++|++++|||+|+-++..+.+- ....+|.|.++..+.+..+++.+++++|||+|++++++...+|++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999999888877665 456789999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059           94 NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus        94 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      +..||++.+.|+..+.++....+.+.+++||+|+..++.+..++.+.+++.+++|++++||++|.|++..|-.|.+.+.+
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            99999999999999999877778889999999998889999999999999999999999999999999999999998876


Q ss_pred             hC
Q 048059          174 VS  175 (198)
Q Consensus       174 ~~  175 (198)
                      ..
T Consensus       162 ~~  163 (192)
T KOG0083|consen  162 LK  163 (192)
T ss_pred             hc
Confidence            54

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=5.8e-31  Score=184.23  Aligned_cols=162  Identities=31%  Similarity=0.609  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++++...+...+.++.+..+ ......++..+.+.+||+||+..+...+..+++.+++++++|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888777777766544 455567778889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+...+....++...++..++++++++||++|.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887753 357899999999999765566677788888889999999999999999999999998


Q ss_pred             HHHh
Q 048059          170 RLAR  173 (198)
Q Consensus       170 ~~~~  173 (198)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            7754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=2.2e-31  Score=190.14  Aligned_cols=167  Identities=33%  Similarity=0.610  Sum_probs=153.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|.+|+|||+|..++.+..+...+.||++ +.+.+.+.+++..+.+.|+||+|++.+..+...++.+++++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            368999999999999999999999999999999998 5557778888999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      ||+++++.||+.+..+++.+.+. .....|+++||||+|+...+.+..++++.++..++++|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            99999999999999999999553 34668999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHhhCC
Q 048059          168 AKRLARVSP  176 (198)
Q Consensus       168 ~~~~~~~~~  176 (198)
                      ++.+.....
T Consensus       161 ~r~~~~~~~  169 (196)
T KOG0395|consen  161 VREIRLPRE  169 (196)
T ss_pred             HHHHHhhhc
Confidence            998877443

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=1.2e-30  Score=185.63  Aligned_cols=165  Identities=30%  Similarity=0.551  Sum_probs=142.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      .||+++|++|+|||||++++++..+...+.++.+..+ ...+...+..+.+.+||+||++++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998887766777765544 445566777788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      |.++..+++.+..|+..+.+.. ..+.|+++++||+|+...+....++...++..++++++++||+++.|+.++|.+|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999998888887653 356899999999999766666777778888888999999999999999999999999


Q ss_pred             HHHhhCC
Q 048059          170 RLARVSP  176 (198)
Q Consensus       170 ~~~~~~~  176 (198)
                      .+.....
T Consensus       161 ~~~~~~~  167 (180)
T cd04137         161 EIEKVEN  167 (180)
T ss_pred             HHHHhcC
Confidence            8876654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00876 Ras Ras family

Probab=100.00  E-value=7.5e-31  Score=182.88  Aligned_cols=158  Identities=33%  Similarity=0.617  Sum_probs=139.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      ||+++|++|||||||++++++..+...+.++.+ +.........+..+.+++||+||++.+...+..+++++|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777777766 4445566667677899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      ++++++++.+..|+..+..... ...|+++++||+|+...+....+.+..++..++++++++|++++.|++++|++|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888887654 578999999999998767777888999999889999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.98  E-value=2.4e-30  Score=183.18  Aligned_cols=159  Identities=31%  Similarity=0.506  Sum_probs=135.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      .||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999999888778888776553 45567788889999999999999999888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059           91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAKT  156 (198)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (198)
                      |++++++++.+. .|+..+... ..+.|+++++||+|+...            ..+...+++.++...+. ++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999885 687777654 357899999999998532            23456778888887775 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 048059          157 AQNINELFYEIAKRL  171 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~  171 (198)
                      |.|++++|++|.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.98  E-value=1.2e-30  Score=188.27  Aligned_cols=164  Identities=24%  Similarity=0.422  Sum_probs=135.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      ||+++|++|||||||+++++++.+...+.++.. ......+.+.+..+.+.+||++|+..+..++..++.++|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888776666664 3345566777778899999999999998888999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDS-QREVPTEEGEQFSQ-ENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ++++.+++.+..|+..+..... .+.|+++++||.|+.. .+.+..+....... ..+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877543 5789999999999865 34455545444443 4567899999999999999999999


Q ss_pred             HHHHhhCC
Q 048059          169 KRLARVSP  176 (198)
Q Consensus       169 ~~~~~~~~  176 (198)
                      +.+.....
T Consensus       160 ~~~~~~~~  167 (198)
T cd04147         160 RQANLPYN  167 (198)
T ss_pred             HHhhcccc
Confidence            97764333

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04149 Arf6 Arf6 subfamily

Probab=99.98  E-value=4.9e-31  Score=185.51  Aligned_cols=154  Identities=22%  Similarity=0.374  Sum_probs=123.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||+++|..+.+. .+.+|.+.++..  +.  ...+.+++|||+|++++..+++.+++++|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999876654 456777766532  22  246789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  162 (198)
                      |||++++.+++.+..|+..+... ...+.|++||+||+|+...  +..+++..+..     ...+.++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            99999999999888777666542 2356899999999998542  34556665542     1235789999999999999


Q ss_pred             HHHHHHH
Q 048059          163 LFYEIAK  169 (198)
Q Consensus       163 ~~~~l~~  169 (198)
                      +|+||.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.98  E-value=1.4e-30  Score=185.23  Aligned_cols=160  Identities=20%  Similarity=0.309  Sum_probs=124.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+++|++|||||||++++..+.+. .+.||.+.+...    +....+.+.+||+||++.++.+|..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            44689999999999999999999877765 456777765432    2334578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-----GMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++++++.+..++..+... ...+.|++|++||.|+....  ..++..+...-.     .+.++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999998887776666432 23568999999999986533  233333322111     1246689999999999


Q ss_pred             HHHHHHHHHHHhh
Q 048059          162 ELFYEIAKRLARV  174 (198)
Q Consensus       162 ~~~~~l~~~~~~~  174 (198)
                      ++|+||.+.+..+
T Consensus       168 e~~~~l~~~~~~~  180 (181)
T PLN00223        168 EGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887653

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=2e-31  Score=186.83  Aligned_cols=153  Identities=20%  Similarity=0.305  Sum_probs=127.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      .|+++|++|||||||+++|.++.+...+.||.+...    ..++...+.+.+||++|++.+..+|..+++++|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999998877777788887543    2345567889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH----HHHHHHHHHcCCeEEEEccCC------CCCHH
Q 048059           92 ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT----EEGEQFSQENGMFYIETSAKT------AQNIN  161 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~  161 (198)
                      .+++.+++.+..|+..+.... .+.|+++|+||.|+...+.+..    ..+..++++.++.++++||++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999988888876543 6789999999999876554321    234556666788999999988      99999


Q ss_pred             HHHHHHHH
Q 048059          162 ELFYEIAK  169 (198)
Q Consensus       162 ~~~~~l~~  169 (198)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=2.1e-30  Score=182.61  Aligned_cols=157  Identities=25%  Similarity=0.392  Sum_probs=127.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      ||+++|++|||||||+++|.+..+. .+.+|.+..+..    +....+.+.+||+||++.+...|..+++++|+++||||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999999987654 366777655532    23346789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG------MFYIETSAKTAQNINELF  164 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~  164 (198)
                      ++++++++.+..|+..+.+. ...+.|++|++||+|+..  .+..+++..++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            99999999998888887653 234579999999999853  355666666654322      368899999999999999


Q ss_pred             HHHHHHHHhhC
Q 048059          165 YEIAKRLARVS  175 (198)
Q Consensus       165 ~~l~~~~~~~~  175 (198)
                      +||.+.+.+..
T Consensus       154 ~~l~~~~~~~~  164 (169)
T cd04158         154 DWLSRQLVAAG  164 (169)
T ss_pred             HHHHHHHhhcc
Confidence            99998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=3.7e-31  Score=187.35  Aligned_cols=157  Identities=21%  Similarity=0.347  Sum_probs=123.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+++|++|||||||++++..+.+. .+.||.+.++..  +..  ..+.+.+||++|++.+..+|..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            34699999999999999999999877663 466777766532  222  4578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++++++....|+..+... ...+.|++||+||+|+....  ..++.....     +...+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            999999999999988877776543 23568999999999986432  223322222     1223457789999999999


Q ss_pred             HHHHHHHHHH
Q 048059          162 ELFYEIAKRL  171 (198)
Q Consensus       162 ~~~~~l~~~~  171 (198)
                      ++|+||...+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=3.8e-31  Score=184.52  Aligned_cols=152  Identities=20%  Similarity=0.359  Sum_probs=118.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|.+|||||||++++..+.+. .+.||.+.+..  .+.  ...+.+.+||++|++++..++..+++++|++||||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877765 46677776543  222  24678999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHH-HHHHH----HcCCeEEEEccCCCCCHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEG-EQFSQ----ENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      |++++.+++++..|+..+... ...+.|++|++||+|+....  ..++. ..+..    ..++.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988777666432 23468999999999985432  22222 22211    224467899999999999999


Q ss_pred             HHHHH
Q 048059          165 YEIAK  169 (198)
Q Consensus       165 ~~l~~  169 (198)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=2.4e-30  Score=184.44  Aligned_cols=164  Identities=24%  Similarity=0.320  Sum_probs=130.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      .+||+++|++|||||||++++..+.+.. ..++.+.+.....+.. .+..+.+.+|||+|++.+..+|..+++++|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            5899999999999999999999877654 3577776655555443 3467889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH------cCCeEEEEccCCCCCHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE------NGMFYIETSAKTAQNIN  161 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~  161 (198)
                      |||++++.+++.+..|+..+... ...+.|+++++||+|+...  ...++...+...      .+++++++||++|.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            99999999999888888777653 2356899999999998542  333444444321      13568999999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 048059          162 ELFYEIAKRLARVSP  176 (198)
Q Consensus       162 ~~~~~l~~~~~~~~~  176 (198)
                      +++++|.+.+.+..+
T Consensus       160 ~l~~~l~~~l~~~~~  174 (183)
T cd04152         160 EGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998865544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=5.3e-31  Score=184.46  Aligned_cols=167  Identities=27%  Similarity=0.477  Sum_probs=150.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ...+|++|+|+.++|||+|+..++.+.++..+.||.-.++ ...+.++ ++.+.+.+|||+|++.|..+++..+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3569999999999999999999999999999999987554 5666774 9999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 048059           87 VVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIET  152 (198)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~  152 (198)
                      +++|++.+++|++++ ..|+..+..+. ++.|+++||+|.||..            ...+..+++.+++++.|+ .|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999998 68999998886 7899999999999963            246788999999999995 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          153 SAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      ||++..|++++|+..+..+....+
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999998887765

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=8.4e-31  Score=186.56  Aligned_cols=160  Identities=22%  Similarity=0.341  Sum_probs=123.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|++|||||||++++..+.+.. +.||.+.++..  +  ....+.+.+||++|++.++.+|..+++++|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--V--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--E--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998776653 56777765532  2  235578999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++++++....++..+... ...+.|++|++||.|+....  ..++......     ...+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999887766666432 23467999999999985422  2233222211     122357799999999999


Q ss_pred             HHHHHHHHHHHhh
Q 048059          162 ELFYEIAKRLARV  174 (198)
Q Consensus       162 ~~~~~l~~~~~~~  174 (198)
                      ++|+||.+.+.+.
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877654

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=3.5e-29  Score=182.87  Aligned_cols=167  Identities=27%  Similarity=0.499  Sum_probs=145.2

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAA   84 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   84 (198)
                      ......+||+++|++|||||||++++..+.+...+.++.+.++....+...+..+.+.+||++|++.+..++..++.+++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            34555799999999999999999988888888888999998888877777888999999999999999999999999999


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      ++++|||+++..++..+..|+..+.... .+.|+++++||+|+... .... +...++...++.++++||++|.|++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999887654 56899999999998542 3333 3346777788999999999999999999


Q ss_pred             HHHHHHHHhh
Q 048059          165 YEIAKRLARV  174 (198)
Q Consensus       165 ~~l~~~~~~~  174 (198)
                      .+|.+.+...
T Consensus       161 ~~ia~~l~~~  170 (215)
T PTZ00132        161 LWLARRLTND  170 (215)
T ss_pred             HHHHHHHhhc
Confidence            9999988754

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=2e-29  Score=177.68  Aligned_cols=157  Identities=29%  Similarity=0.551  Sum_probs=132.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++|+++.+...+.++..... .......+..+.+++||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999888666666665443 445566788889999999999988888888899999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEEccCCC
Q 048059           91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR-----------EVPTEEGEQFSQENGM-FYIETSAKTA  157 (198)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (198)
                      |+++++++.... .|+..+.... .+.|+++|+||+|+....           .+..+++..++..+++ +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999998774 5777776654 478999999999986443           3456778888888888 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 048059          158 QNINELFYEIAK  169 (198)
Q Consensus       158 ~~i~~~~~~l~~  169 (198)
                      .|++++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.97  E-value=1.6e-29  Score=181.73  Aligned_cols=160  Identities=18%  Similarity=0.321  Sum_probs=132.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-----CcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-----EATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      +||+++|++|||||||++++.++.+...+.+|++.++..+.+.+.     +..+.+.||||+|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888999887777766664     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhC-------------------CCCceEEEEEeCCCCCCCCCCCHH----HHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQG-------------------NQIVVMALAANKSDLDSQREVPTE----EGEQFS  142 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~iiv~nK~Dl~~~~~~~~~----~~~~~~  142 (198)
                      +|+|||++++.+++.+..|+..+....                   ..+.|++|||||.|+..++.+..+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987642                   246899999999999766544433    345678


Q ss_pred             HHcCCeEEEEccCCCC----------CHHHHHHHHHHH
Q 048059          143 QENGMFYIETSAKTAQ----------NINELFYEIAKR  170 (198)
Q Consensus       143 ~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~  170 (198)
                      ++.+++.++.++++..          -+...|+.++++
T Consensus       161 ~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (202)
T cd04102         161 EQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK  198 (202)
T ss_pred             HhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence            8899998888887642          255556555543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=9.4e-30  Score=179.91  Aligned_cols=157  Identities=22%  Similarity=0.289  Sum_probs=124.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ..+..++|+++|++|||||||+++|.+..+ ..+.++.+...  ..+.++  .+.+.+||+||++.+..++..+++++|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            345679999999999999999999997743 34556666433  333343  4778999999999999899999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQN  159 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  159 (198)
                      +++|||++++.+++....|+..+... ...+.|+++|+||+|+....  ..++...+..     ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            99999999999999888887776542 23678999999999986533  3455555443     2467899999999999


Q ss_pred             HHHHHHHHHH
Q 048059          160 INELFYEIAK  169 (198)
Q Consensus       160 i~~~~~~l~~  169 (198)
                      ++++|++|+.
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=3.8e-29  Score=175.69  Aligned_cols=160  Identities=28%  Similarity=0.355  Sum_probs=125.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|.+|||||||+++|.++.+...+..+. ... .....+.+..+.+.+|||+|.+.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999988765543322 222 333455677889999999999888877888889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHH
Q 048059           91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQENG--MFYIETSAKTAQNINELFY  165 (198)
Q Consensus        91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~  165 (198)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+....  ..+....++..++  .+++++||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 6888777654 47899999999999655432  1233333333332  3799999999999999999


Q ss_pred             HHHHHHHh
Q 048059          166 EIAKRLAR  173 (198)
Q Consensus       166 ~l~~~~~~  173 (198)
                      .+...+..
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=2.8e-28  Score=172.28  Aligned_cols=147  Identities=41%  Similarity=0.670  Sum_probs=131.7

Q ss_pred             CCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhC
Q 048059           33 GQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG  112 (198)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  112 (198)
                      +.+...+.+|+|.++..+.+.+++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            34667788999999988888889999999999999999999999999999999999999999999999999999887765


Q ss_pred             CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCCCCC
Q 048059          113 NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR  179 (198)
Q Consensus       113 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  179 (198)
                      ....|++||+||+|+...+.+..+++..++..+++.++++||++|.|++++|++|++.+.+....++
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~~~  149 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNSNS  149 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccccCC
Confidence            5678999999999997777788888999999999999999999999999999999999977554443

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.97  E-value=1.1e-29  Score=178.63  Aligned_cols=153  Identities=23%  Similarity=0.213  Sum_probs=120.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      +|+++|++|||||||++++.+. +...+.+|.+...  ..+..  ..+.+++||+||++.++.+|..+++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 5666778877653  23333  45788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCH-H---HHHHHHHHc--CCeEEEEccCCC------C
Q 048059           92 ISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPT-E---EGEQFSQEN--GMFYIETSAKTA------Q  158 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~-~---~~~~~~~~~--~~~~~~~Sa~~~------~  158 (198)
                      ++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.... .   ....++.+.  .+.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999999988887642 25789999999999865442111 0   112233222  356888999998      8


Q ss_pred             CHHHHHHHHHH
Q 048059          159 NINELFYEIAK  169 (198)
Q Consensus       159 ~i~~~~~~l~~  169 (198)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04157 Arl6 Arl6 subfamily

Probab=99.97  E-value=2.1e-29  Score=176.06  Aligned_cols=152  Identities=19%  Similarity=0.260  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +|+++|++|||||||+++|++... ...+.++.+.....  +  ....+.+.+|||||++.+..++..++.++|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 45566777754322  2  234678899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQ---GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  162 (198)
                      |++++.+++....|+..+...   ...+.|+++++||+|+.....  .++......     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            999999998888887777553   125689999999999864322  222222211     1234689999999999999


Q ss_pred             HHHHHHH
Q 048059          163 LFYEIAK  169 (198)
Q Consensus       163 ~~~~l~~  169 (198)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=2.2e-28  Score=173.07  Aligned_cols=154  Identities=23%  Similarity=0.374  Sum_probs=120.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..++|+++|++|+|||||+++++.+.+.. ..++.+.++..  +..  ..+.+.+||+||++.+...|..++.++|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            36899999999999999999999877654 56777765432  222  35788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHH-HHHH----HHcCCeEEEEccCCCCCHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEG-EQFS----QENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      |||+++++++.....++..+... ...+.|+++++||+|+...  ...++. ..+.    ...+++++++||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999999988887666665443 2356899999999998542  223332 2222    23456799999999999999


Q ss_pred             HHHHHHH
Q 048059          163 LFYEIAK  169 (198)
Q Consensus       163 ~~~~l~~  169 (198)
                      +|++|..
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=6.5e-31  Score=177.97  Aligned_cols=170  Identities=26%  Similarity=0.432  Sum_probs=159.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      -+..+|++|+|..++||||++++++.+.+...+..++|.++....+.+.+..+.+.+||++|++++.....+|+++|.+.
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~   96 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS   96 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence            35579999999999999999999999999999999999999888888888888889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      ++||+.+|.+||+....|++.+.... ..+|.++|-||+|+.++..++..+++.+++++++.++.+|++...|+.++|..
T Consensus        97 vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y  175 (246)
T KOG4252|consen   97 VLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY  175 (246)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence            99999999999999999999998875 56899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 048059          167 IAKRLARVSPP  177 (198)
Q Consensus       167 l~~~~~~~~~~  177 (198)
                      |++++.+..++
T Consensus       176 LaeK~~q~~kq  186 (246)
T KOG4252|consen  176 LAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHH
Confidence            99998877665

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=1.9e-28  Score=171.02  Aligned_cols=152  Identities=25%  Similarity=0.390  Sum_probs=117.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      +|+++|++|||||||++++.++.+.. ..++.+.+..  .+.. ...+.+.+||++|++.+...+..++.++|++++|||
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999887653 4566665543  2223 345789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHH------HHHcCCeEEEEccCCCCCHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQF------SQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      .+++.+++.+..|+..+... ...+.|+++++||+|+....  ..++....      +...+++++++||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            99999998888777776543 22578999999999985422  22222222      22234579999999999999999


Q ss_pred             HHHHH
Q 048059          165 YEIAK  169 (198)
Q Consensus       165 ~~l~~  169 (198)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=4.9e-28  Score=173.58  Aligned_cols=156  Identities=23%  Similarity=0.280  Sum_probs=124.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...++|+++|++|||||||++++.+..+. .+.++.+...  ..+.++  .+.+.+||+||+..+...|..+++++|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45789999999999999999999987753 4566666543  233333  367889999999999899999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------cCCeEE
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQE----------------NGMFYI  150 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~  150 (198)
                      +|+|.++.++++....|+..+.... ..+.|+++++||+|+..  .+..++.+.+...                ..+.++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            9999999999988877777766532 35689999999999853  4455666665542                234689


Q ss_pred             EEccCCCCCHHHHHHHHHHH
Q 048059          151 ETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      +|||++|.|++++|+||...
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=5.5e-28  Score=169.79  Aligned_cols=152  Identities=22%  Similarity=0.332  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQF------YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      +|+++|++|+|||||+++|.+...      ...+.++.+.+..  .+.+  ....+.+||+||++.+...+..++.++|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999986432      2233455554442  2233  35788999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEccCCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-------NGMFYIETSAKTA  157 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~  157 (198)
                      +++|+|++++++++....|+..+.+. ...+.|+++++||+|+...  ...++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            99999999998898888887776653 2357899999999998543  333444444332       2468999999999


Q ss_pred             CCHHHHHHHHHH
Q 048059          158 QNINELFYEIAK  169 (198)
Q Consensus       158 ~~i~~~~~~l~~  169 (198)
                      .|++++++||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=8.6e-28  Score=180.88  Aligned_cols=170  Identities=23%  Similarity=0.393  Sum_probs=136.2

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-------------CcEEEEEEEeCCCchhh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-------------EATVKFDIWDTAGQERY   72 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~   72 (198)
                      +....+||+|+|..|||||||+++|.++.+...+.+|+|.++....+.++             +..+.++||||+|++.|
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            45567999999999999999999999998888888999988776666654             25688999999999999


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC------------CCceEEEEEeCCCCCCCC---C---CC
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN------------QIVVMALAANKSDLDSQR---E---VP  134 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~iiv~nK~Dl~~~~---~---~~  134 (198)
                      ..++..++++++++|+|||+++..+++.+..|+..+.....            .+.|++||+||+|+...+   .   +.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999987531            358999999999996542   2   35


Q ss_pred             HHHHHHHHHHcCCe-E---E------------EEccCCC----CCHHHHHHHHHHHHHhhC
Q 048059          135 TEEGEQFSQENGMF-Y---I------------ETSAKTA----QNINELFYEIAKRLARVS  175 (198)
Q Consensus       135 ~~~~~~~~~~~~~~-~---~------------~~Sa~~~----~~i~~~~~~l~~~~~~~~  175 (198)
                      .++++.++++.++. .   +            ...|+.+    +-+...|..|++.-+-..
T Consensus       177 ~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (334)
T PLN00023        177 VDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSD  237 (334)
T ss_pred             HHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcc
Confidence            78999999998742 1   1            1123322    346777877777554433

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=1.7e-28  Score=171.01  Aligned_cols=151  Identities=23%  Similarity=0.328  Sum_probs=114.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      ||+++|++++|||||+++|..+.+. ...++.+.+..  .+  ....+.+++|||||++.+..+|..++..+|++|+|||
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            6899999999999999999877654 34566665543  22  2345789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      ++++.++.....++..+.. ....+.|+++++||+|+....  ...+......     ..+++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998888776555544433 333568999999999986432  2222222211     1235799999999999999999


Q ss_pred             HHHH
Q 048059          166 EIAK  169 (198)
Q Consensus       166 ~l~~  169 (198)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=4.4e-28  Score=168.87  Aligned_cols=151  Identities=25%  Similarity=0.342  Sum_probs=119.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      ||+++|.+|||||||++++++.. ...+.++.+.....  +.+  ..+.+.+||+||++.+...+..++..+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999887 34455666655432  223  35678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +++++++..+..|+..+.... ..+.|+++++||+|+....  ..++......     ...++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888877776642 3578999999999986543  2333333322     2356899999999999999999


Q ss_pred             HHHH
Q 048059          166 EIAK  169 (198)
Q Consensus       166 ~l~~  169 (198)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=1.1e-27  Score=169.40  Aligned_cols=158  Identities=27%  Similarity=0.397  Sum_probs=124.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....++|+++|+.|||||||++++..+... ...||.|.+..  .+.+  ..+.+.+||.+|+..++..|+.++.++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~--~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE--EIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE--EEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc--eeee--CcEEEEEEeccccccccccceeecccccee
Confidence            366899999999999999999999876533 35667675543  3333  446788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH------HcCCeEEEEccCCCCC
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ------ENGMFYIETSAKTAQN  159 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~  159 (198)
                      |||+|.++.+.+.+....+..+... .....|++|++||.|+..  ....++......      ...+.++.|||.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999998888887666666553 336789999999999764  334455544332      2345689999999999


Q ss_pred             HHHHHHHHHHHH
Q 048059          160 INELFYEIAKRL  171 (198)
Q Consensus       160 i~~~~~~l~~~~  171 (198)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=2.4e-27  Score=158.36  Aligned_cols=163  Identities=21%  Similarity=0.270  Sum_probs=129.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      .+.+++|+++|..||||||++++|.+.. .....||.|.......    .+.+.+++||.+|+...++.|+.||+.+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~----~~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLE----YKGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEE----ecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4558999999999999999999999766 4556677775544333    3567899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCC---C-HHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREV---P-TEEGEQFSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~---~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      |+|+|.+|+..+++....+..+.. ..-...|++|++||.|+...-..   . .-....+++..+++++.|||.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            999999999998877655554433 22245799999999998732211   1 122345556778999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 048059          162 ELFYEIAKRLARV  174 (198)
Q Consensus       162 ~~~~~l~~~~~~~  174 (198)
                      +.++||++.++++
T Consensus       168 ~gidWL~~~l~~r  180 (185)
T KOG0073|consen  168 EGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=3.4e-27  Score=168.35  Aligned_cols=156  Identities=19%  Similarity=0.208  Sum_probs=120.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...++|+++|++|||||||++++.++.+. .+.++.+.+..  .+..  ..+++.+||+||++.+...|..++.++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            44699999999999999999999987653 34455554332  2223  3477899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE------------NGMFYIETSA  154 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  154 (198)
                      +|+|++++.+++....++..+... ...+.|+++++||+|+..  .+..+++.+....            ..+.+++|||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999999998887777766542 235689999999999853  3344444433311            2345899999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 048059          155 KTAQNINELFYEIAKR  170 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~  170 (198)
                      ++|.|++++++||..+
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01890 LepA LepA subfamily

Probab=99.95  E-value=2.7e-26  Score=163.00  Aligned_cols=154  Identities=20%  Similarity=0.259  Sum_probs=114.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCC------cceeEEEEEEEe-----CCcEEEEEEEeCCCchhhc
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ-------FYDQQEPT------IGAAFFTQILSL-----SEATVKFDIWDTAGQERYH   73 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~~   73 (198)
                      +|+++|++++|||||+++|++..       +...+.++      .|.++.......     ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998732       11122222      233443333222     5667889999999999999


Q ss_pred             ccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---eEE
Q 048059           74 SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM---FYI  150 (198)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  150 (198)
                      ..+..++..+|++|+|||+++..+.+....|....    ..+.|+++++||+|+....  ..+...++++.+++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999877666666554332    2357899999999985422  22334566666666   389


Q ss_pred             EEccCCCCCHHHHHHHHHHHH
Q 048059          151 ETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ++||++|.|++++|++|...+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=1.4e-26  Score=160.88  Aligned_cols=152  Identities=25%  Similarity=0.378  Sum_probs=120.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      .|+++|++|||||||+++|.+..+...+.++.+.+...  +..+  .+.+.+||+||++.+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37999999999999999999998888888888766543  2233  3779999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHHH
Q 048059           92 ISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +++..++.....|+..+... ...+.|+++++||.|+.....  .+......     ....++++++|+++|.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            99998888887776666542 225679999999999865332  12221111     12346789999999999999999


Q ss_pred             HHHH
Q 048059          166 EIAK  169 (198)
Q Consensus       166 ~l~~  169 (198)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=5.7e-26  Score=159.71  Aligned_cols=155  Identities=18%  Similarity=0.158  Sum_probs=107.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---------cchhhhcC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---------LAPMYYRG   82 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~~   82 (198)
                      +|+++|++|+|||||+++|++..+.....+.  .+............+.+.+|||||......         ........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPF--TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCC--cccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7999999999999999999987654322111  111122222233457899999999742110         01111233


Q ss_pred             CCeEEEEEECCChhhH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           83 AAAAVVVYDISNMDTF--NRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      +|++|+|+|+++..++  +....|+..+.... .+.|+++++||+|+.....+.  ....+....+++++++||++|.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence            6899999999887653  55567777776543 468999999999986544332  245555656789999999999999


Q ss_pred             HHHHHHHHHHH
Q 048059          161 NELFYEIAKRL  171 (198)
Q Consensus       161 ~~~~~~l~~~~  171 (198)
                      +++++++.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=7.7e-26  Score=159.79  Aligned_cols=154  Identities=21%  Similarity=0.293  Sum_probs=116.7

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      +....++|+++|++|||||||++++.+..+. ...++.+.+..  .+...  ...+.+||++|+..+...+..+++++|+
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            3445799999999999999999999986543 34566664432  23333  3678899999999888889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEccCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--------MFYIETSAKT  156 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~  156 (198)
                      +++|+|+++..++.....++..+... .....|+++++||+|+.....  .+   .+....+        ++++++||++
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~---~i~~~l~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AE---EIAEALNLHDLRDRTWHIQACSAKT  159 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HH---HHHHHcCCcccCCCeEEEEEeECCC
Confidence            99999999988888877666655442 235689999999999854322  22   2223233        2478999999


Q ss_pred             CCCHHHHHHHHHH
Q 048059          157 AQNINELFYEIAK  169 (198)
Q Consensus       157 ~~~i~~~~~~l~~  169 (198)
                      |.|++++|+||++
T Consensus       160 ~~gi~~~~~~l~~  172 (173)
T cd04155         160 GEGLQEGMNWVCK  172 (173)
T ss_pred             CCCHHHHHHHHhc
Confidence            9999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.1e-26  Score=157.57  Aligned_cols=163  Identities=20%  Similarity=0.310  Sum_probs=130.9

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ...+.+|+++|.-++||||++.+|..++.... .||+|.+.....+    +++.+++||.+|+++++.+|++|+.+.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            45689999999999999999999998776555 8999987666554    378899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCC---CCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQRE---VPTEEGEQFSQENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      |||+|.+|++.+..+..-+..+.... .+..|+++.+||.|++..-.   ++......-.....+.+..|+|.+|+|+.+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e  168 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE  168 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence            99999999999988866555555543 37899999999999875433   222222222223456788999999999999


Q ss_pred             HHHHHHHHHHhh
Q 048059          163 LFYEIAKRLARV  174 (198)
Q Consensus       163 ~~~~l~~~~~~~  174 (198)
                      .++||...+..+
T Consensus       169 gl~wl~~~~~~~  180 (181)
T KOG0070|consen  169 GLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHhcc
Confidence            999999887543

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=6.7e-26  Score=159.59  Aligned_cols=157  Identities=19%  Similarity=0.159  Sum_probs=110.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch----hhcccchhhh---cCCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE----RYHSLAPMYY---RGAA   84 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~---~~~d   84 (198)
                      +|+++|++|||||||+++|.+........+..........+...+ ...+.+|||||..    ....+...++   ..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999997553211111111111111222222 2478899999963    2222333433   4699


Q ss_pred             eEEEEEECCCh-hhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 048059           85 AAVVVYDISNM-DTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNI  160 (198)
Q Consensus        85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  160 (198)
                      ++++|+|++++ .+++.+..|.+.+.....  ...|+++|+||+|+...... .+....+... .+.+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788999999888876532  36799999999998654443 3445555555 3788999999999999


Q ss_pred             HHHHHHHHHH
Q 048059          161 NELFYEIAKR  170 (198)
Q Consensus       161 ~~~~~~l~~~  170 (198)
                      +++|++|.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=2.9e-25  Score=153.87  Aligned_cols=158  Identities=29%  Similarity=0.466  Sum_probs=127.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|.+|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++.+++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887777777777777666667777668899999999999999999999999999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           90 YDISNM-DTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        90 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|.... .++.... .|...+........|+++++||.|+.... ........+......+++++||+++.|+.+++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999876 6666554 66666666544478999999999986543 33334444444456689999999999999999986


Q ss_pred             H
Q 048059          168 A  168 (198)
Q Consensus       168 ~  168 (198)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.94  E-value=8.8e-25  Score=160.03  Aligned_cols=169  Identities=35%  Similarity=0.480  Sum_probs=138.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||+++|.+..+...+.++.+..+...........+++.+|||+|+++++.+++.++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34999999999999999999999999998888888877777776666668889999999999999999999999999999


Q ss_pred             EEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC------------CCCHHHHHHHHHHc---CCeEEEE
Q 048059           89 VYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR------------EVPTEEGEQFSQEN---GMFYIET  152 (198)
Q Consensus        89 v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~  152 (198)
                      +||.++.. +.+....|...+........|+++++||+|+....            ..............   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            99999844 45566889999888765678999999999996553            33333333333322   3348999


Q ss_pred             ccC--CCCCHHHHHHHHHHHHHhhCCC
Q 048059          153 SAK--TAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       153 Sa~--~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      |++  ++.++.++|..+...+.+....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~~  190 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIEK  190 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence            999  9999999999999998765443

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=1.2e-25  Score=162.87  Aligned_cols=157  Identities=24%  Similarity=0.210  Sum_probs=112.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh---------hcccchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER---------YHSLAPM   78 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~   78 (198)
                      ...++|+|+|++|||||||++++++........+..+.+.....+.+.+. ..+.+|||||...         +...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            34589999999999999999999987643322222222222333334332 3688999999732         11111 2


Q ss_pred             hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059           79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ  158 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (198)
                      .+.++|++++|+|++++.+++....|...+......+.|+++|+||+|+......     .......+.+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence            3568999999999999888888777777776654456899999999998553322     13445567789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 048059          159 NINELFYEIAKRL  171 (198)
Q Consensus       159 ~i~~~~~~l~~~~  171 (198)
                      |+++++++|...+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.94  E-value=1.1e-24  Score=144.09  Aligned_cols=169  Identities=24%  Similarity=0.355  Sum_probs=142.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-cccchhhhcCCCe
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY--DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-HSLAPMYYRGAAA   85 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~d~   85 (198)
                      ...||+++|..++|||+++.+|+.+...  .+..+|+...+..-...-++..-.+.|+||.|...+ ..+-.+|+.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            3589999999999999999999976644  345677766555444455566678999999998777 6678889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +++||+..|++||+.++.+...|.... ...+|+++++||+|+.++++++.+.+..||+...+.++++++.+...+-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            999999999999998887766666643 3679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCC
Q 048059          165 YEIAKRLARVSPP  177 (198)
Q Consensus       165 ~~l~~~~~~~~~~  177 (198)
                      ..+..++...+..
T Consensus       168 ~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  168 TYLASRLHQPQSK  180 (198)
T ss_pred             HHHHHhccCCccc
Confidence            9999988765553

>cd04171 SelB SelB subfamily

Probab=99.94  E-value=2.9e-25  Score=155.29  Aligned_cols=152  Identities=18%  Similarity=0.133  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ---FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +.|+++|++|||||||+++|++..   +.....++.+.+.....+.+.. ...+.+|||||++.+......++.++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999643   2222222223232233333332 457899999999988777777888999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC--CCHHHHHHHHHH---cCCeEEEEccCCCCC
Q 048059           88 VVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE--VPTEEGEQFSQE---NGMFYIETSAKTAQN  159 (198)
Q Consensus        88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~  159 (198)
                      +|+|+++   +++.+.+.    .+...  ...|+++++||+|+.....  ...++..+..+.   .+.+++++||+++.|
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999986   33333222    22221  2248999999999864321  112333344443   467899999999999


Q ss_pred             HHHHHHHHHH
Q 048059          160 INELFYEIAK  169 (198)
Q Consensus       160 i~~~~~~l~~  169 (198)
                      ++++++.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=4.8e-25  Score=169.44  Aligned_cols=162  Identities=18%  Similarity=0.093  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-------hcccchhhhcCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-------YHSLAPMYYRGA   83 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~   83 (198)
                      ..|.|+|.||||||||+++|+.........+..........+.+. ....+.+||+||...       ....+-..++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            568999999999999999999765332222221111112222222 334688999999632       111223345689


Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      +++++|+|+++.++++++..|...+..+..  .+.|+++|+||+|+........+..+.++...+++++++||+++.|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999988889999999988877533  467999999999986554444444555556677899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 048059          162 ELFYEIAKRLAR  173 (198)
Q Consensus       162 ~~~~~l~~~~~~  173 (198)
                      +++++|.+.+.+
T Consensus       318 eL~~~L~~~l~~  329 (335)
T PRK12299        318 ELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.94  E-value=8.7e-26  Score=149.66  Aligned_cols=175  Identities=19%  Similarity=0.390  Sum_probs=151.0

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAA   84 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   84 (198)
                      ..+...+||.++|++..|||||+-.+.++.++.++..+.|.++..+.+.+.+..+.+.+||.+|++++..+.+....++-
T Consensus        15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv   94 (205)
T KOG1673|consen   15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV   94 (205)
T ss_pred             cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence            35677899999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC-----CCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS-----QREVPTEEGEQFSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (198)
                      +++|+||++.+.++..+..|+...+....... .++||||.|.--     ..+.....++.+++-.+++.++||+....|
T Consensus        95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAi-PilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen   95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAI-PILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EEEEEEecCchHHHHHHHHHHHHHhccCCccc-eEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence            99999999999999999999998776543334 457899999621     112224567888889999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCC
Q 048059          160 INELFYEIAKRLARVSPPKRS  180 (198)
Q Consensus       160 i~~~~~~l~~~~~~~~~~~~~  180 (198)
                      ++++|..+..++..-.-.-.+
T Consensus       174 v~KIFK~vlAklFnL~~ti~~  194 (205)
T KOG1673|consen  174 VQKIFKIVLAKLFNLPWTIPE  194 (205)
T ss_pred             HHHHHHHHHHHHhCCceeccc
Confidence            999999999988765544333

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.94  E-value=8.3e-26  Score=154.70  Aligned_cols=134  Identities=18%  Similarity=0.234  Sum_probs=99.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch-----hhcccchhhhcCCCeE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE-----RYHSLAPMYYRGAAAA   86 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~   86 (198)
                      ||+++|++|||||||+++|.+..+  .+.++.+.++       .     -.+|||||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            899999999999999999997654  2333332221       1     1589999972     2333333 47899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFY  165 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  165 (198)
                      |+|||++++.++.. ..|...+      ..|+++|+||+|+.+ +....++..++++..+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999988754 3343321      138999999999864 34456677788877776 799999999999999999


Q ss_pred             HHH
Q 048059          166 EIA  168 (198)
Q Consensus       166 ~l~  168 (198)
                      +|.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.93  E-value=3.9e-24  Score=146.96  Aligned_cols=153  Identities=42%  Similarity=0.720  Sum_probs=121.8

Q ss_pred             EEcCCCCCHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC
Q 048059           15 LLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS   93 (198)
Q Consensus        15 v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   93 (198)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||++|...+...+..++..+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998776 44455555 6666666666677889999999999888888888999999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           94 NMDTFNRANKLV-QELQRQGNQIVVMALAANKSDLDSQREVPTEE-GEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        94 ~~~s~~~~~~~~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ++.+++....|+ ...........|+++++||+|+.......... .........++++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999988888773 22333345678999999999986544433222 4455566778999999999999999999985

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=3.2e-25  Score=160.34  Aligned_cols=155  Identities=23%  Similarity=0.254  Sum_probs=105.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC-----------chhhcccch
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG-----------QERYHSLAP   77 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~   77 (198)
                      ..++|+++|++|+|||||+++|++..+.....+  +.++....+...    .+.+|||||           ++.++..+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            358999999999999999999998775544444  444444433333    588999999           466666666


Q ss_pred             hhhc----CCCeEEEEEECCChhhH-H---------HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 048059           78 MYYR----GAAAAVVVYDISNMDTF-N---------RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQ  143 (198)
Q Consensus        78 ~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  143 (198)
                      .++.    .++++++|+|.++...+ +         .-..+...+.   ..+.|+++|+||+|+....   .+...+++.
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~  155 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAE  155 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence            6654    35788888887543221 0         0011122222   2467999999999985433   344566666


Q ss_pred             HcCC---------eEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          144 ENGM---------FYIETSAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       144 ~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      .+++         +++++||++| |+++++++|.+.+.+..+
T Consensus       156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            6665         4799999999 999999999988755443

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=6.2e-24  Score=147.72  Aligned_cols=148  Identities=22%  Similarity=0.202  Sum_probs=108.1

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc------cchhhhc--CCCeE
Q 048059           15 LLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS------LAPMYYR--GAAAA   86 (198)
Q Consensus        15 v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~d~~   86 (198)
                      |+|.+|+|||||++++++........++.+.+.....+.+.+  ..+.+|||||+..+..      ++..++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998764444444444444444454543  4688999999876654      2455554  99999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      ++|+|.++++...   .|...+..   .+.|+++++||+|+.....+.. ....++..++++++++||+++.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998765432   33333332   3579999999999965544433 346777778899999999999999999999


Q ss_pred             HHHHH
Q 048059          167 IAKRL  171 (198)
Q Consensus       167 l~~~~  171 (198)
                      |...+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=2.5e-24  Score=154.87  Aligned_cols=160  Identities=16%  Similarity=0.180  Sum_probs=111.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK--GQFYDQQ------------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA   76 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   76 (198)
                      .+|+++|.+++|||||+++|+.  +.+...+            ..+.+.++......+....+.+.+|||||++++...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  4433322            1234555555555566677889999999999999999


Q ss_pred             hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCCe
Q 048059           77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQ-------ENGMF  148 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~  148 (198)
                      ..+++++|++++|||+++.. +.....++..+..   .+.|+++++||+|+...+. ...++..++..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2333334443332   3578999999999864332 12233444432       23678


Q ss_pred             EEEEccCCCCCHHHH------HHHHHHHHHhh
Q 048059          149 YIETSAKTAQNINEL------FYEIAKRLARV  174 (198)
Q Consensus       149 ~~~~Sa~~~~~i~~~------~~~l~~~~~~~  174 (198)
                      ++++||++|.|+.+.      +.+|+..+.+.
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~  190 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH  190 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence            999999999776433      55555555543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=1.1e-23  Score=147.87  Aligned_cols=157  Identities=17%  Similarity=0.135  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      .|+|+|++|+|||||+++|+.+.+.....++...+.....+... .....+.+|||||++.+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999877655433333332222222222 13567899999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC-CHHHHHHHHH------HcCCeEEEEccCCCCCHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV-PTEEGEQFSQ------ENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      |+++....+... .+..+..   .+.|+++++||+|+...... ..+....+..      ..+++++++|+++|.|+.++
T Consensus        82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998743222111 1222222   45789999999998643211 0111111111      12368999999999999999


Q ss_pred             HHHHHHHHH
Q 048059          164 FYEIAKRLA  172 (198)
Q Consensus       164 ~~~l~~~~~  172 (198)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=1.7e-23  Score=162.01  Aligned_cols=153  Identities=23%  Similarity=0.199  Sum_probs=108.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch---------hhcccchhhh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE---------RYHSLAPMYY   80 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~   80 (198)
                      .++|+++|.+|+|||||+|+|++........+....+.....+.+.+ ...+.+|||+|..         .+...+ ..+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            48999999999999999999998764332222222333344455532 2478899999972         222222 247


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      .++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.....     ..... ....+++++||++|.|+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCCCH
Confidence            7999999999999998888877777666665445689999999999854221     11111 22346899999999999


Q ss_pred             HHHHHHHHHH
Q 048059          161 NELFYEIAKR  170 (198)
Q Consensus       161 ~~~~~~l~~~  170 (198)
                      ++++++|.+.
T Consensus       341 ~eL~~~I~~~  350 (351)
T TIGR03156       341 DLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=2.1e-23  Score=160.20  Aligned_cols=160  Identities=21%  Similarity=0.173  Sum_probs=112.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh----cccch---hhhcC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY----HSLAP---MYYRG   82 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~---~~~~~   82 (198)
                      -..|+|+|.|+||||||+++|+.........+..........+.+. ....+.+||+||....    ..+..   ..+..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            3679999999999999999999865332222211111112222333 2367899999997421    12222   33467


Q ss_pred             CCeEEEEEECCCh---hhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059           83 AAAAVVVYDISNM---DTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA  157 (198)
Q Consensus        83 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (198)
                      ++++++|+|+++.   .+++++..|.+.+.....  ...|++||+||+|+..... ..+..+.++..++.+++++||+++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence            9999999999876   677888888877766432  4679999999999865432 234556666677889999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 048059          158 QNINELFYEIAKRL  171 (198)
Q Consensus       158 ~~i~~~~~~l~~~~  171 (198)
                      .|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=1.2e-23  Score=139.80  Aligned_cols=114  Identities=29%  Similarity=0.530  Sum_probs=89.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFY--DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      ||+|+|++|||||||+++|.+....  ....+..+.++.............+.+||++|++.+...+..++.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998765  22334445555555666677776799999999999988888889999999999


Q ss_pred             EECCChhhHHHHHH---HHHHHHHhCCCCceEEEEEeCCC
Q 048059           90 YDISNMDTFNRANK---LVQELQRQGNQIVVMALAANKSD  126 (198)
Q Consensus        90 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~iiv~nK~D  126 (198)
                      ||++++++++.+..   |+..+.... .+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            99999999988754   455555543 5599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.2e-24  Score=138.91  Aligned_cols=157  Identities=23%  Similarity=0.375  Sum_probs=125.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      +.++|+++|..++||||++..|..+. .....||.|++.....    .+++++.+||.+|+++.+.+|.+|+.+..++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            47899999999999999999998765 4456688786655444    367889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHH-HHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHH
Q 048059           89 VYDISNMDTFNRANK-LVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        89 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      |+|..+...+++++. +...+....-...|++|++||.|++....  ..++..+.     +...+-+.+++|.+|+|+.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            999998888877754 44444444457789999999999976443  34444443     23456688999999999999


Q ss_pred             HHHHHHHHHH
Q 048059          163 LFYEIAKRLA  172 (198)
Q Consensus       163 ~~~~l~~~~~  172 (198)
                      -|.||...+.
T Consensus       169 glswlsnn~~  178 (180)
T KOG0071|consen  169 GLSWLSNNLK  178 (180)
T ss_pred             HHHHHHhhcc
Confidence            9999987653

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=5.7e-24  Score=139.75  Aligned_cols=155  Identities=24%  Similarity=0.380  Sum_probs=124.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+.+.++|..+||||||++.+..+.+...-.||.|.+..    .+....+.+.+||.||+.+++.+|+.|.+.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            3578999999999999999999988888888888886532    344567788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHH-HHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEccCCCCC
Q 048059           89 VYDISNMDTFNRANKLVQE-LQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--------MFYIETSAKTAQN  159 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~-~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~  159 (198)
                      ++|+++++.++....-+.. +....-...|++|+|||.|+...-.  .   ..+..+.|        +..|.+|+++..|
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~---~~li~rmgL~sitdREvcC~siScke~~N  169 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--K---IALIERMGLSSITDREVCCFSISCKEKVN  169 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--H---HHHHHHhCccccccceEEEEEEEEcCCcc
Confidence            9999999988777544333 3344447799999999999865332  1   23333333        4578999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048059          160 INELFYEIAKRLA  172 (198)
Q Consensus       160 i~~~~~~l~~~~~  172 (198)
                      ++-+.+||+++-.
T Consensus       170 id~~~~Wli~hsk  182 (186)
T KOG0075|consen  170 IDITLDWLIEHSK  182 (186)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998654

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=1.1e-23  Score=149.07  Aligned_cols=155  Identities=23%  Similarity=0.200  Sum_probs=105.2

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----hcccc---hhhhcCCCeEE
Q 048059           15 LLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----YHSLA---PMYYRGAAAAV   87 (198)
Q Consensus        15 v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~---~~~~~~~d~~i   87 (198)
                      ++|++|||||||+++|++........+..........+.+. ....+.+|||||...    ...++   ...+.++|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            58999999999999999876421111111111111222222 145678999999732    12222   23467899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHHhCC-------CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059           88 VVYDISNM------DTFNRANKLVQELQRQGN-------QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus        88 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                      +|+|++++      .+++.+..|...+.....       ...|+++|+||+|+..................+.+++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      577777777777765432       36899999999998654443322223444455678999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 048059          155 KTAQNINELFYEIAKR  170 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~  170 (198)
                      +++.|++++++++...
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=7.7e-23  Score=154.06  Aligned_cols=155  Identities=16%  Similarity=0.082  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchhhhcC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQ-QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPMYYRG   82 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~   82 (198)
                      +|+++|.+|||||||+|+|++...... ..+...... ...+... ...++.+|||||......        ....++.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            689999999999999999998764321 111111111 1122222 234689999999743211        23345789


Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNIN  161 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  161 (198)
                      +|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+..... ..+....+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999998876554  334444433   3579999999999853222 22334455444454 79999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 048059          162 ELFYEIAKRLARV  174 (198)
Q Consensus       162 ~~~~~l~~~~~~~  174 (198)
                      +++++|.+.+.+.
T Consensus       154 ~L~~~l~~~l~~~  166 (270)
T TIGR00436       154 FLAAFIEVHLPEG  166 (270)
T ss_pred             HHHHHHHHhCCCC
Confidence            9999998877543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=2.1e-23  Score=142.76  Aligned_cols=148  Identities=22%  Similarity=0.272  Sum_probs=103.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc------ccchhhh--cC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH------SLAPMYY--RG   82 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~--~~   82 (198)
                      ++|+++|.||||||||+|+|++........|..+.+.....+.+.+  ..+.++|+||.-...      ..+..++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999886655556555555555555555  567899999952222      1223333  68


Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      .|++|+|+|+++.+.   -..+...+.+   ...|+++++||+|....+.... ....+.+.++++++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r---~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLER---NLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHH---HHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHH---HHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            999999999986442   2233333433   3579999999999865544432 36777888999999999999999999


Q ss_pred             HHHHH
Q 048059          163 LFYEI  167 (198)
Q Consensus       163 ~~~~l  167 (198)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=6.2e-23  Score=158.68  Aligned_cols=157  Identities=21%  Similarity=0.292  Sum_probs=106.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcce--eEEEEEEEeCCcEEEEEEEeCCCchh-hcccc-------h
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGA--AFFTQILSLSEATVKFDIWDTAGQER-YHSLA-------P   77 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~-------~   77 (198)
                      .+.++|+++|.+|||||||+++|++..+.. ..+..++  +.....+..+  ..++.||||||... +..+.       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            456799999999999999999999877542 1222222  2222333333  35689999999843 22221       1


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcc
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYIETSA  154 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa  154 (198)
                      ..+.++|++++|+|..+  +++... .|+..+...   ..|+++|+||+|+...   ......+++...+  ..++++||
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence            24679999999999764  444443 455555432   3466789999998542   2345555555443  57999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhC
Q 048059          155 KTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      ++|.|+++++++|...+.+..
T Consensus       199 ktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             cCccCHHHHHHHHHHhCCCCC
Confidence            999999999999988776543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=9.1e-23  Score=141.50  Aligned_cols=146  Identities=22%  Similarity=0.160  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhhhc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMYYR   81 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~   81 (198)
                      ++|+++|++|+|||||++++++..... ...+.............  ....+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            689999999999999999999865321 12222222222223333  3457889999997544321        224567


Q ss_pred             CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059           82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      ++|++++|+|++++.+......+..      ....|+++++||+|+......       .....+.+++++||+++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998777766554433      356799999999998654432       334456789999999999999


Q ss_pred             HHHHHHHHHH
Q 048059          162 ELFYEIAKRL  171 (198)
Q Consensus       162 ~~~~~l~~~~  171 (198)
                      +++++|...+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=1.2e-22  Score=145.10  Aligned_cols=156  Identities=18%  Similarity=0.165  Sum_probs=109.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc--------------ceeEEEEEEEeCCcEEEEEEEeCCCchhhcccch
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTI--------------GAAFFTQILSLSEATVKFDIWDTAGQERYHSLAP   77 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   77 (198)
                      +|+|+|.+|+|||||+++|++...........              +.+..............+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            58999999999999999999876554331111              1111122222233356789999999998888889


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHH-----------
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQE-----------  144 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~-----------  144 (198)
                      .++..+|++++|+|.+++.+.... .++..+..   .+.|+++++||+|+......  ..+...+....           
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT  156 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence            999999999999999876544332 33333332   46799999999998642221  12223333332           


Q ss_pred             ---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          145 ---NGMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       145 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                         ...+++++||++|.|+++++++|.+.+
T Consensus       157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence               356899999999999999999999875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=2.1e-22  Score=165.28  Aligned_cols=158  Identities=21%  Similarity=0.250  Sum_probs=117.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CcceeEEEEEEEe-----CCcEEEEEEEeCCCchh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ-------FYDQQEP------TIGAAFFTQILSL-----SEATVKFDIWDTAGQER   71 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~   71 (198)
                      -.||+++|+.++|||||+++|+...       +...+..      ..|.++....+.+     ++..+.+.||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3689999999999999999998642       1112211      2245544433322     45668999999999999


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---e
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM---F  148 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~  148 (198)
                      |...+..+++.+|++|+|||+++..+.+....|...+.    .+.|+++++||+|+....  ..+...++...+++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998776666666654432    356899999999985422  12333455555665   4


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          149 YIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ++++||++|.|++++|++|.+.+..
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCCC
Confidence            8999999999999999999887643

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=9.6e-23  Score=164.30  Aligned_cols=154  Identities=21%  Similarity=0.187  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--------hcccchhhhcC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--------YHSLAPMYYRG   82 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~   82 (198)
                      .+|+|+|.+|||||||+++|++.... ....+.|.+..............+.+|||||.+.        +...+..++.+
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~  117 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT  117 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence            68999999999999999999986542 2223334433333322222334678999999752        33445667889


Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      +|++|+|||+++..+... ..+...+..   .+.|+++|+||+|+....   .+....+....+ .++++||++|.|+++
T Consensus       118 aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi~e  189 (472)
T PRK03003        118 ADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGVGD  189 (472)
T ss_pred             CCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCcHH
Confidence            999999999998765433 334444433   457999999999985321   122223333333 357999999999999


Q ss_pred             HHHHHHHHHHh
Q 048059          163 LFYEIAKRLAR  173 (198)
Q Consensus       163 ~~~~l~~~~~~  173 (198)
                      +|++|+..+.+
T Consensus       190 L~~~i~~~l~~  200 (472)
T PRK03003        190 LLDAVLAALPE  200 (472)
T ss_pred             HHHHHHhhccc
Confidence            99999988755

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=1.8e-22  Score=160.50  Aligned_cols=153  Identities=21%  Similarity=0.173  Sum_probs=112.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMY   79 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   79 (198)
                      ..++|+++|++|+|||||+++|++.... ....+..+.+.....+.+++  ..+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999986432 22233334444444455544  55789999998554332        2356


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (198)
                      ++++|++++|||++++.+++..  |+..+..   .+.|+++|+||+|+...      ....+++.++.+++++||++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999988877665  6555432   35799999999998543      12345666788899999998 69


Q ss_pred             HHHHHHHHHHHHHhhC
Q 048059          160 INELFYEIAKRLARVS  175 (198)
Q Consensus       160 i~~~~~~l~~~~~~~~  175 (198)
                      ++++|+.|.+.+.+..
T Consensus       348 I~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       348 IKALVDLLTQKINAFY  363 (442)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.90  E-value=1.7e-22  Score=140.58  Aligned_cols=142  Identities=15%  Similarity=0.201  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch-----hhcccchhhhcCCCeE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE-----RYHSLAPMYYRGAAAA   86 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~   86 (198)
                      +|+++|.+|+|||||+++|.+...  ....+.+       ..+...    .+|||||..     .+..+. ..+.++|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc--cCccceE-------EEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence            799999999999999999886431  1112211       122222    269999972     222222 236899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--eEEEEccCCCCCHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM--FYIETSAKTAQNINELF  164 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~  164 (198)
                      ++|+|+++..++.  ..|+..+    ....|+++++||+|+..   ...+...+++...++  +++++||++|.|++++|
T Consensus        69 l~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         69 IYVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            9999999876652  2333332    23568999999999854   235666777777775  89999999999999999


Q ss_pred             HHHHHHHHhhCC
Q 048059          165 YEIAKRLARVSP  176 (198)
Q Consensus       165 ~~l~~~~~~~~~  176 (198)
                      +++.+.+.+...
T Consensus       140 ~~l~~~~~~~~~  151 (158)
T PRK15467        140 DYLASLTKQEEA  151 (158)
T ss_pred             HHHHHhchhhhc
Confidence            999887765544

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=1.9e-22  Score=161.18  Aligned_cols=149  Identities=23%  Similarity=0.199  Sum_probs=109.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMY   79 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   79 (198)
                      ..++|+++|.+|+|||||+++|++.... ....+....+.....+.+++  ..+.+|||||.+.+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3589999999999999999999986532 22233333333344444443  56789999998654332        2236


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (198)
                      +.++|++++|||++++.+++....|..      ..+.|+++|+||+|+.......        ...+.+++++||++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999998887776554443      3457999999999986433221        33567899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 048059          160 INELFYEIAKRLAR  173 (198)
Q Consensus       160 i~~~~~~l~~~~~~  173 (198)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998765

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=1.3e-22  Score=145.66  Aligned_cols=159  Identities=19%  Similarity=0.138  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC----CCCCC-----CCCCcceeEEEEEEE----------eCCcEEEEEEEeCCCchh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG----QFYDQ-----QEPTIGAAFFTQILS----------LSEATVKFDIWDTAGQER   71 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~----~~~~~-----~~~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~   71 (198)
                      +||+++|++++|||||+++|+..    .+...     ...|.+..+....+.          .......+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999862    11111     112333333333332          123367889999999876


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHH-H-----
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFS-Q-----  143 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~-~-----  143 (198)
                      +..........+|++++|+|+++.......+.+.  +...  ...|+++++||+|+......  ..++..+.. .     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444334456789999999998754433333222  1222  24589999999998532211  122222211 1     


Q ss_pred             -HcCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          144 -ENGMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       144 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                       ..+++++++||++|.|+++++++|.+++..
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence             136789999999999999999999987754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=4.2e-22  Score=157.62  Aligned_cols=158  Identities=20%  Similarity=0.200  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh--cccchh------hhcC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY--HSLAPM------YYRG   82 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------~~~~   82 (198)
                      .+|+++|.+|||||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|..+.  ...+..      .+.+
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999986654333333233333334444432 25679999997321  222332      3578


Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHH
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNIN  161 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  161 (198)
                      +|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+.....   ....  ....+.+ ++.+||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999998888776665555554445689999999999853211   1111  1123444 5889999999999


Q ss_pred             HHHHHHHHHHHhh
Q 048059          162 ELFYEIAKRLARV  174 (198)
Q Consensus       162 ~~~~~l~~~~~~~  174 (198)
                      +++++|...+...
T Consensus       352 eL~e~I~~~l~~~  364 (426)
T PRK11058        352 LLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999988543

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.7e-21  Score=153.47  Aligned_cols=158  Identities=23%  Similarity=0.229  Sum_probs=112.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEE--EEeCCcEEEEEEEeCCCchh----hcccchhh---hc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQI--LSLSEATVKFDIWDTAGQER----YHSLAPMY---YR   81 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~   81 (198)
                      ..|+++|.||||||||+++|++........+.  ++..+..  +.+. ....+.+||+||...    ...+...+   +.
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypf--TTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhie  235 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHF--TTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIE  235 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCc--ceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHh
Confidence            38999999999999999999986533222222  1111221  2222 145688999999632    11222333   46


Q ss_pred             CCCeEEEEEECCCh---hhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059           82 GAAAAVVVYDISNM---DTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT  156 (198)
Q Consensus        82 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (198)
                      .++++++|+|+++.   +++++...|...+.....  ...|++||+||+|+..    ..+....+.+.++.+++++||++
T Consensus       236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~t  311 (424)
T PRK12297        236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALT  311 (424)
T ss_pred             hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCC
Confidence            79999999999864   567777778777776532  4689999999999842    13445666766778899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhC
Q 048059          157 AQNINELFYEIAKRLARVS  175 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~~  175 (198)
                      +.|+++++++|.+.+.+..
T Consensus       312 geGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        312 GQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCCHHHHHHHHHHHHHhCc
Confidence            9999999999998876654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=4.3e-22  Score=160.54  Aligned_cols=162  Identities=21%  Similarity=0.189  Sum_probs=110.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch----------hhcccc-
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE----------RYHSLA-   76 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~-   76 (198)
                      ..++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++.  .+.+|||||..          .+..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            3589999999999999999999987642 233344444443444555544  45799999952          222222 


Q ss_pred             hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHH-HHHHHcCCeEEEEc
Q 048059           77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGE-QFSQENGMFYIETS  153 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~-~~~~~~~~~~~~~S  153 (198)
                      ..+++++|++++|||++++.+++.+. ++..+..   .+.|+++|+||+|+......  ..++.. .+.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            23568999999999999887777664 3333333   45799999999998642211  111111 12222346899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCC
Q 048059          154 AKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      |++|.|++++|+.+.+.+.....
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~  386 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDT  386 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999887654444

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=2.1e-22  Score=139.78  Aligned_cols=146  Identities=19%  Similarity=0.131  Sum_probs=97.4

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchhhhcCCC
Q 048059           14 VLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPMYYRGAA   84 (198)
Q Consensus        14 ~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d   84 (198)
                      +++|.+|+|||||+++|++.... ....+....+.......  .....+.+|||||...+..        .+...+.++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE--WGGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE--ECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999976422 11122222222222222  2346788999999876443        3345678899


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINEL  163 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~  163 (198)
                      ++++|+|..++.+.... .+...+..   ...|+++++||+|+......     .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999775544332 22222322   34799999999998653321     222334565 7899999999999999


Q ss_pred             HHHHHHH
Q 048059          164 FYEIAKR  170 (198)
Q Consensus       164 ~~~l~~~  170 (198)
                      +++|++.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.89  E-value=2.4e-22  Score=145.39  Aligned_cols=161  Identities=16%  Similarity=0.130  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCCCcceeEEEEEEE-----------------------eC--C----
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQ-----QEPTIGAAFFTQILS-----------------------LS--E----   56 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~-----~~~~~~~~~~~~~~~-----------------------~~--~----   56 (198)
                      ++|+++|+.|+|||||+.+|.+...+..     ...+....+....+.                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            5899999999999999999976421110     111111111110000                       00  0    


Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--C
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--P  134 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~  134 (198)
                      ....+.||||||++.+...+...+.++|++++|+|++++....+....+..+...  ...|+++++||.|+......  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1267899999999988887777888999999999998642111111122222222  23478999999998642211  1


Q ss_pred             HHHHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          135 TEEGEQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       135 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      .+..+++....   +++++++||++|.|+++++++|.+.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            12333333332   5789999999999999999999876544

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=9.4e-23  Score=139.62  Aligned_cols=171  Identities=28%  Similarity=0.514  Sum_probs=149.8

Q ss_pred             CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhh
Q 048059            1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYY   80 (198)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   80 (198)
                      |..|......++++++|..|.||||++++.+.+.+...+.++.|.........-+...+++..|||.|++.+..+...++
T Consensus         1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy   80 (216)
T KOG0096|consen    1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY   80 (216)
T ss_pred             CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence            67777777889999999999999999999999999999999999988777776666679999999999999999999999


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      -+....|++||++.+-++.++.+|...+.+.. .++|++++|||.|.....  .......+-++.++.++++||+.+.|.
T Consensus        81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nf  157 (216)
T KOG0096|consen   81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNF  157 (216)
T ss_pred             EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccc
Confidence            99999999999999999999999999998875 559999999999975422  223445566677899999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 048059          161 NELFYEIAKRLARV  174 (198)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (198)
                      ..-|.|+.+++...
T Consensus       158 ekPFl~LarKl~G~  171 (216)
T KOG0096|consen  158 ERPFLWLARKLTGD  171 (216)
T ss_pred             ccchHHHhhhhcCC
Confidence            99999999987654

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=1.4e-21  Score=140.71  Aligned_cols=160  Identities=19%  Similarity=0.169  Sum_probs=106.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc----------hhhcccc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ----------ERYHSLA   76 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~   76 (198)
                      ....++|+++|++|+|||||+++|++..+.....++.+.+........   ...+.+|||||.          +.+....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            345689999999999999999999987655555566665543333322   357889999994          3333344


Q ss_pred             hhhhcC---CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCeEEE
Q 048059           77 PMYYRG---AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQENGMFYIE  151 (198)
Q Consensus        77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~  151 (198)
                      ..++..   .+++++++|.+++.+.... .+...+..   ...|+++++||+|+....+.  ..+.+.......+.++++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  173 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL  173 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence            445543   4678888998765433221 11222221   35689999999998543221  122233444334678999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHh
Q 048059          152 TSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      +||+++.|++++++.|...+.+
T Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        174 FSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEcCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999877654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=2e-21  Score=155.61  Aligned_cols=161  Identities=17%  Similarity=0.124  Sum_probs=106.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc----------
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA----------   76 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----------   76 (198)
                      ...++|+++|.+|+|||||+++|++.... ....+....+.....+...+  ..+.+|||||..++....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            34589999999999999999999986532 11222222222222333333  368899999975443221          


Q ss_pred             -hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH-HHHHH----cCCeEE
Q 048059           77 -PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE-QFSQE----NGMFYI  150 (198)
Q Consensus        77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~  150 (198)
                       ..+++.+|++|+|+|++++.+..... ++..+..   ...|+++|+||+|+.+.. ...+... .+...    .+++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence             23578999999999999876665543 3333332   357999999999986211 1111222 22222    247899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          151 ETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      ++||++|.|++++|+++...+....
T Consensus       323 ~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999988766543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.7e-21  Score=154.19  Aligned_cols=163  Identities=20%  Similarity=0.185  Sum_probs=108.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh----ccc---chhhhcC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY----HSL---APMYYRG   82 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~   82 (198)
                      -..|+|+|.||||||||+++|++........+..  +..+..-.+......+++||+||....    ..+   .-..+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfT--Tl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFT--TLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcc--cccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            4689999999999999999999865432222222  222222222223357899999995311    111   1224578


Q ss_pred             CCeEEEEEECCCh----hhHHHHHHHHHHHHHhC-----------CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 048059           83 AAAAVVVYDISNM----DTFNRANKLVQELQRQG-----------NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM  147 (198)
Q Consensus        83 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  147 (198)
                      ++++|+|+|+++.    ..++++..+...+....           ....|++||+||+|+...... .+.........++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence            9999999999753    34555555554554332           135799999999998644332 2233333345578


Q ss_pred             eEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          148 FYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       148 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      +++++||+++.|+++++.+|.+.+....
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999998876654

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=3.8e-21  Score=157.29  Aligned_cols=153  Identities=19%  Similarity=0.164  Sum_probs=108.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ...+|+++|++++|||||+++|.+..+.....+.++.+.....+...+. ..+.||||||++.|..++...+..+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4579999999999999999999987765544443333333333333322 268899999999999999989999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc---------CCeEEEEccCCCCC
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN---------GMFYIETSAKTAQN  159 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~  159 (198)
                      |+|+++...-+..+. +...   ...+.|+++++||+|+...   ..+.........         ..+++++||++|.|
T Consensus       165 VVda~dgv~~qT~e~-i~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTIEA-ISHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHHHH-HHHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            999876432222221 1221   1245799999999998542   223333333222         24799999999999


Q ss_pred             HHHHHHHHHH
Q 048059          160 INELFYEIAK  169 (198)
Q Consensus       160 i~~~~~~l~~  169 (198)
                      +++++++|..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999999875

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04163 Era Era subfamily

Probab=99.88  E-value=3.9e-21  Score=134.34  Aligned_cols=156  Identities=17%  Similarity=0.113  Sum_probs=103.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchhhhc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPMYYR   81 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~   81 (198)
                      ..+|+++|++|||||||++++++.......... .................+.+|||||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            578999999999999999999986543222111 1111111222333456788999999643222        2344578


Q ss_pred             CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 048059           82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAKTAQNI  160 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i  160 (198)
                      .+|++++|+|++++.+ +....+...+..   .+.|+++++||+|+........+....+.... ..+++++|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIG-EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccC-chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            8999999999987621 112223333332   24689999999998643333344445555544 368999999999999


Q ss_pred             HHHHHHHHHH
Q 048059          161 NELFYEIAKR  170 (198)
Q Consensus       161 ~~~~~~l~~~  170 (198)
                      ++++++|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=5.7e-21  Score=149.67  Aligned_cols=162  Identities=17%  Similarity=0.127  Sum_probs=111.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-------ccchhhhcCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-------SLAPMYYRGA   83 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~   83 (198)
                      ..|.|+|.||||||||+++|++.+......|..+.....-.+... ....+.++||||...-.       ...-..+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            379999999999999999999865432222322222112223332 23458899999974311       1111346789


Q ss_pred             CeEEEEEECC---ChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccCC
Q 048059           84 AAAVVVYDIS---NMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYIETSAKT  156 (198)
Q Consensus        84 d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  156 (198)
                      +++++|+|++   +...++.+..|++.+.....  ...|+++|+||+|+.....+ .+....+....+  .+++.+||++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t  317 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS  317 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence            9999999987   45567777778777766432  35799999999998643332 344455555544  4789999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 048059          157 AQNINELFYEIAKRLARV  174 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (198)
                      +.|+++++++|.+.+.+.
T Consensus       318 g~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        318 GLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CcCHHHHHHHHHHHhhhC
Confidence            999999999999988664

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.87  E-value=5.4e-24  Score=145.27  Aligned_cols=176  Identities=32%  Similarity=0.517  Sum_probs=148.9

Q ss_pred             CCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcE-EEEEEEeCCCchhhcccchhhh
Q 048059            2 ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT-VKFDIWDTAGQERYHSLAPMYY   80 (198)
Q Consensus         2 ~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~~~~~~~~~~   80 (198)
                      +.|.....-+|++|+|.-|+|||+++.++....++..+..++|.++..+...-+... ++++|||..|++++..+..-|+
T Consensus        17 ~ap~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyy   96 (229)
T KOG4423|consen   17 SAPKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYY   96 (229)
T ss_pred             CCCchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEe
Confidence            344455667999999999999999999999988888899999998887776555443 5788999999999999999999


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCC-eEEEEcc
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQG----NQIVVMALAANKSDLDSQRE-VPTEEGEQFSQENGM-FYIETSA  154 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa  154 (198)
                      +.+++..+|||+++..+|+....|.+.+....    +...|++++.||||...... .......++++++++ ..+++|+
T Consensus        97 kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~  176 (229)
T KOG4423|consen   97 KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSA  176 (229)
T ss_pred             cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecc
Confidence            99999999999999999999999999987632    24578899999999854322 224677888888987 6999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCC
Q 048059          155 KTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      |.+.+++++-+.+++++.....+
T Consensus       177 Kenkni~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  177 KENKNIPEAQRELVEKILVNDEQ  199 (229)
T ss_pred             ccccChhHHHHHHHHHHHhhccC
Confidence            99999999999999998877643

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=4.3e-21  Score=157.49  Aligned_cols=157  Identities=21%  Similarity=0.189  Sum_probs=112.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ---FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +.|+++|++++|||||+++|++..   +..+...+++.+.....+...+  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            479999999999999999999633   2233334444444344444444  77899999999999888888899999999


Q ss_pred             EEEECCC---hhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC--CHHHHHHHHHHc----CCeEEEEccCCC
Q 048059           88 VVYDISN---MDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV--PTEEGEQFSQEN----GMFYIETSAKTA  157 (198)
Q Consensus        88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~  157 (198)
                      +|+|+++   +++.+.+.    .+..   .+.| ++|++||+|+......  ..+++..+....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999987   34443332    2222   2345 9999999998653321  223445555544    578999999999


Q ss_pred             CCHHHHHHHHHHHHHhhCC
Q 048059          158 QNINELFYEIAKRLARVSP  176 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~~  176 (198)
                      .|+++++.+|...+.....
T Consensus       152 ~GI~eL~~~L~~l~~~~~~  170 (581)
T TIGR00475       152 QGIGELKKELKNLLESLDI  170 (581)
T ss_pred             CCchhHHHHHHHHHHhCCC
Confidence            9999999998877665443

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.87  E-value=2.2e-21  Score=137.81  Aligned_cols=149  Identities=14%  Similarity=0.160  Sum_probs=98.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch----------hhccc
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE----------RYHSL   75 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~   75 (198)
                      +....++|+|+|++|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||..          .+..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            446678999999999999999999998764444455555554443333332   58899999952          23333


Q ss_pred             chhhhc---CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--Ce
Q 048059           76 APMYYR---GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE--VPTEEGEQFSQENG--MF  148 (198)
Q Consensus        76 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~  148 (198)
                      ...+++   .++++++|+|.+++.+.... .++..+..   ...|+++++||+|+....+  ...+++++.....+  ++
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            344554   36899999999875444333 22233322   3578999999999854321  12344444444443  58


Q ss_pred             EEEEccCCCCCHH
Q 048059          149 YIETSAKTAQNIN  161 (198)
Q Consensus       149 ~~~~Sa~~~~~i~  161 (198)
                      ++++||++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=5.2e-21  Score=145.85  Aligned_cols=161  Identities=18%  Similarity=0.120  Sum_probs=105.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc--------ccchhhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH--------SLAPMYY   80 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~   80 (198)
                      ..-.|+|+|++|||||||+|+|++........ ...++.....-.......++.++||||.....        ......+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~-~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCC-CCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            45679999999999999999999876532211 11111111111111233678999999964322        2233456


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCCCC
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQN  159 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  159 (198)
                      .++|++++|+|+++..+ +.....+..+.   ..+.|+++|+||+|+........+....+....+ .+++++||+++.|
T Consensus        83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            88999999999987322 11222233332   2357999999999986433333444555555444 5799999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 048059          160 INELFYEIAKRLARV  174 (198)
Q Consensus       160 i~~~~~~l~~~~~~~  174 (198)
                      +++++++|...+.+.
T Consensus       159 v~~L~~~L~~~l~~~  173 (292)
T PRK00089        159 VDELLDVIAKYLPEG  173 (292)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999887543

>cd01895 EngA2 EngA2 subfamily

Probab=99.87  E-value=1.9e-20  Score=131.82  Aligned_cols=155  Identities=17%  Similarity=0.144  Sum_probs=100.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-----------cch
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-----------LAP   77 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~   77 (198)
                      .++|+++|.+|+|||||+++|++..... ...+..........+...+  ..+.+|||||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            4789999999999999999999865321 1222222222223333333  3477999999643211           112


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHH-HHHHHHc----CCeEEEE
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEG-EQFSQEN----GMFYIET  152 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~~~~----~~~~~~~  152 (198)
                      ..+..+|++++|+|.+++.+..... ++..+..   ...|+++++||+|+........+.. ....+.+    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3457899999999998876654432 2222222   3479999999999865432222222 2222333    3689999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 048059          153 SAKTAQNINELFYEIAKR  170 (198)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~  170 (198)
                      ||+++.|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.6e-22  Score=133.37  Aligned_cols=162  Identities=22%  Similarity=0.265  Sum_probs=122.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ-------FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY   79 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   79 (198)
                      ....+.|+|+|+-++|||||+.++....       ......+|.|.+.....+  .  ...+.+||.+|++..+++|..|
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHH
Confidence            3456899999999999999998876421       112233555554333332  2  4568899999999999999999


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH---H---HcCCeEEEE
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS---Q---ENGMFYIET  152 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~---~~~~~~~~~  152 (198)
                      +..++++|+++|+++++.|+.....++.+... .-...|+++.+||.|+...-.  .++++...   .   +..+++.++
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPV  167 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccc
Confidence            99999999999999999998877666655443 447799999999999864322  22222222   2   345789999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhh
Q 048059          153 SAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ||.+|+||++...|++..+.+.
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999988877

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=1.6e-20  Score=135.68  Aligned_cols=117  Identities=20%  Similarity=0.304  Sum_probs=86.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC-CeEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA-AAAVVVY   90 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~   90 (198)
                      +|+++|++|||||||+++|..+.+...+.++ ..+..............+.+||+||+.+++..+..+++++ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988765544332 2222222222223456789999999999998888999998 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHH---hCCCCceEEEEEeCCCCCC
Q 048059           91 DISNM-DTFNRANKLVQELQR---QGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        91 d~~~~-~s~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~  129 (198)
                      |+++. .++..+..|+..+..   ......|++|++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99887 667666555444322   2235789999999999853

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.86  E-value=1.1e-21  Score=128.22  Aligned_cols=156  Identities=21%  Similarity=0.268  Sum_probs=120.9

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+++|.-++|||||++.|.+.. .....||.|++.....  +. ..+.+.+||.+|+...+..|..|+.+.|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn~k~v~--~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFNTKKVE--YD-GTFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcceEEEe--ec-CcEEEEEEecCCccccchhhhhhhhccce
Confidence            34668999999999999999999998654 4556688787644433  33 45789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH--------cCCeEEEEccCC
Q 048059           86 AVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE--------NGMFYIETSAKT  156 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~  156 (198)
                      +|||+|.+|..-|+++. .+.+.+....-..+|++|..||.|+..+..+     .+.+.+        ..+.+.+|||.+
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-----eeia~klnl~~lrdRswhIq~csals  163 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-----EEIALKLNLAGLRDRSWHIQECSALS  163 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-----HHHHHhcchhhhhhceEEeeeCcccc
Confidence            99999999988888774 4444444445577999999999998543322     222222        345688999999


Q ss_pred             CCCHHHHHHHHHHH
Q 048059          157 AQNINELFYEIAKR  170 (198)
Q Consensus       157 ~~~i~~~~~~l~~~  170 (198)
                      ++|+..-.+|+...
T Consensus       164 ~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  164 LEGSTDGSDWVQSN  177 (185)
T ss_pred             ccCccCcchhhhcC
Confidence            99999999987653

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=7.8e-21  Score=156.16  Aligned_cols=146  Identities=22%  Similarity=0.210  Sum_probs=106.3

Q ss_pred             cCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc------chhhh--cCCCeEEE
Q 048059           17 GDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL------APMYY--RGAAAAVV   88 (198)
Q Consensus        17 G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i~   88 (198)
                      |++|+|||||+|+|++........++.+.+.....+..++  ..+.+|||||+..+...      ...++  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998775444455444444444444443  45789999998776543      23333  37999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |+|.++.+..   ..+...+.+   .+.|+++++||+|+.+.+.+. .+.+.+++.++++++++||++|.|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999874322   222222222   457999999999986555443 456788888999999999999999999999998


Q ss_pred             HHH
Q 048059          169 KRL  171 (198)
Q Consensus       169 ~~~  171 (198)
                      +.+
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=2e-20  Score=155.34  Aligned_cols=157  Identities=21%  Similarity=0.207  Sum_probs=110.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcc--eeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIG--AAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ....+|+|+|++++|||||+++|....+.....+.++  ...+...+...+....+.||||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            3557999999999999999999998665543322222  22223333344456889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH-------HHHcC--CeEEEEccCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF-------SQENG--MFYIETSAKT  156 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~  156 (198)
                      +|+|+|+++....+..+.| ..+.   ..+.|++|++||+|+....   .+.....       ...++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            9999999874322222222 1221   2457999999999986422   2222211       12223  6899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 048059          157 AQNINELFYEIAKRL  171 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~  171 (198)
                      |.|+++++++|....
T Consensus       395 G~GIdeLle~I~~l~  409 (742)
T CHL00189        395 GTNIDKLLETILLLA  409 (742)
T ss_pred             CCCHHHHHHhhhhhh
Confidence            999999999988753

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=3.1e-20  Score=152.71  Aligned_cols=159  Identities=21%  Similarity=0.245  Sum_probs=114.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CC-----CCC------CCCcceeEEEEEEEe-----CCcEEEEEEEeCCCchh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ--FY-----DQQ------EPTIGAAFFTQILSL-----SEATVKFDIWDTAGQER   71 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~   71 (198)
                      -.||+|+|+.++|||||+.+|+...  ..     ...      ..+.|.++....+.+     ++..+.+.||||||+..
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            4699999999999999999998631  11     011      012233333322222     45578899999999999


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF---  148 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  148 (198)
                      +...+..+++.+|++|+|+|+++....+....|....    ..+.|+++++||+|+....  ..+...++...+++.   
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~  160 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASD  160 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcce
Confidence            9999999999999999999998876555555554332    1357899999999985432  122234444445554   


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059          149 YIETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ++++||++|.|+++++++|.+.+...
T Consensus       161 vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        161 AVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             EEEEecCCCCCHHHHHHHHHHhCccc
Confidence            89999999999999999999877543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.2e-20  Score=151.07  Aligned_cols=152  Identities=20%  Similarity=0.148  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc--------hhhcccchhhhcCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ--------ERYHSLAPMYYRGA   83 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~~~   83 (198)
                      +|+++|.+|||||||+++|++.... ......|.+..............+.+|||||.        +.+......+++++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDA-IVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcc-eecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            5899999999999999999986632 12222333322222222223456899999996        34445566778999


Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHH
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINE  162 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  162 (198)
                      |++++|+|..++.+... ..+...++.   .+.|+++|+||+|+......    ..+ ...+++ +++++||++|.|+++
T Consensus        80 d~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~  150 (429)
T TIGR03594        80 DVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGD  150 (429)
T ss_pred             CEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHH
Confidence            99999999987543332 122223332   35689999999998643321    122 335666 799999999999999


Q ss_pred             HHHHHHHHHHh
Q 048059          163 LFYEIAKRLAR  173 (198)
Q Consensus       163 ~~~~l~~~~~~  173 (198)
                      +++++...+.+
T Consensus       151 ll~~i~~~l~~  161 (429)
T TIGR03594       151 LLDAILELLPE  161 (429)
T ss_pred             HHHHHHHhcCc
Confidence            99999887744

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=2.5e-20  Score=149.47  Aligned_cols=146  Identities=19%  Similarity=0.164  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--------hcccchhhhc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--------YHSLAPMYYR   81 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~   81 (198)
                      .+|+++|.+|||||||+++|++.... ....+..+.+.....+...+  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            57999999999999999999986632 11222222233333334443  6789999999875        2333456678


Q ss_pred             CCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 048059           82 GAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQ  158 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  158 (198)
                      ++|++|+|+|.+++.+..  .+..|+..      .+.|+++++||+|+...    .+...++ ..+++ .++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998754332  22334332      25799999999996431    1222333 34566 48999999999


Q ss_pred             CHHHHHHHHHH
Q 048059          159 NINELFYEIAK  169 (198)
Q Consensus       159 ~i~~~~~~l~~  169 (198)
                      |++++++++..
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999987

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.86  E-value=3.5e-20  Score=155.72  Aligned_cols=153  Identities=18%  Similarity=0.175  Sum_probs=115.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc----------chhh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL----------APMY   79 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~   79 (198)
                      .++|+++|++|||||||+|+|++.....  ....|.+...+...+.....++.+||+||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            5789999999999999999999876533  333566666666556667778999999998665432          1123


Q ss_pred             h--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059           80 Y--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA  157 (198)
Q Consensus        80 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (198)
                      +  ..+|++++|+|.++.+..   ..+...+.+   .+.|+++++||.|+.+.+.+ ....+++.+.++++++++||+++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            2  479999999999875432   233344433   35799999999998655554 35567888889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 048059          158 QNINELFYEIAKRL  171 (198)
Q Consensus       158 ~~i~~~~~~l~~~~  171 (198)
                      +|++++++.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999987754

>cd00880 Era_like Era (E

Probab=99.85  E-value=1.7e-20  Score=129.92  Aligned_cols=151  Identities=21%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             EEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-------cchhhhcCCCeE
Q 048059           15 LLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-------LAPMYYRGAAAA   86 (198)
Q Consensus        15 v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~   86 (198)
                      ++|++|||||||++++++..... ...+.............. ....+.+||+||......       .+..++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999999765432 122211111112222222 145788999999765543       333477899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH---HHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE---EGEQFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      ++|+|.++........ +.....   ....|+++++||+|+.........   .........+++++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999877665554 222222   256799999999998654332211   122333345678999999999999999


Q ss_pred             HHHHHHH
Q 048059          164 FYEIAKR  170 (198)
Q Consensus       164 ~~~l~~~  170 (198)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.85  E-value=3.7e-20  Score=155.00  Aligned_cols=154  Identities=20%  Similarity=0.197  Sum_probs=106.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      .....|+|+|+.++|||||+++|....+.......+..+.....+...  ...+.||||||++.|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            456889999999999999999998766554333322222222223333  367899999999999999998999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH-------HHHHcC--CeEEEEccCCCC
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ-------FSQENG--MFYIETSAKTAQ  158 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~~  158 (198)
                      +|||+++...-+..+.| ...   ...+.|++|++||+|+....   .+....       ++..++  ++++++||++|.
T Consensus       366 LVVdAddGv~~qT~e~i-~~a---~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~  438 (787)
T PRK05306        366 LVVAADDGVMPQTIEAI-NHA---KAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE  438 (787)
T ss_pred             EEEECCCCCCHhHHHHH-HHH---HhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence            99999874221111212 111   12457999999999985422   111111       122233  689999999999


Q ss_pred             CHHHHHHHHHHH
Q 048059          159 NINELFYEIAKR  170 (198)
Q Consensus       159 ~i~~~~~~l~~~  170 (198)
                      |++++|++|...
T Consensus       439 GI~eLle~I~~~  450 (787)
T PRK05306        439 GIDELLEAILLQ  450 (787)
T ss_pred             CchHHHHhhhhh
Confidence            999999998763

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.1e-21  Score=128.69  Aligned_cols=161  Identities=26%  Similarity=0.333  Sum_probs=123.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ...+|+++|.-|+|||+++.++.-+.. ....|++|.+...    +..+++++++||.+|+-..+..|.-|+.+.|++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            679999999999999999988876553 3455777765433    33478899999999999999999999999999999


Q ss_pred             EEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCCC---CCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           89 VYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQRE---VPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      |+|.+|....... ..++..+.+..-++..+++++||.|....-.   +.........+..-+.+|+.||.+|+|++.++
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            9999998776555 3555666655556788999999999754221   11111122223344789999999999999999


Q ss_pred             HHHHHHHHhh
Q 048059          165 YEIAKRLARV  174 (198)
Q Consensus       165 ~~l~~~~~~~  174 (198)
                      +||.+.+.++
T Consensus       172 DWL~~~l~~~  181 (182)
T KOG0072|consen  172 DWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHhcc
Confidence            9999987654

>COG1159 Era GTPase [General function prediction only]

Probab=99.85  E-value=4.6e-20  Score=135.88  Aligned_cols=165  Identities=14%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPM   78 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~   78 (198)
                      ..+.--|+++|.||+|||||+|++.+.+..-.......+.....-+ +..+..++.++||||...-..        ....
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI-~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-VTTDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEE-EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            3456779999999999999999999987553222211121112222 223367889999999643322        2334


Q ss_pred             hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCC
Q 048059           79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTA  157 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  157 (198)
                      .+..+|+++||+|+++...- ..+..++.+..   .+.|+++++||.|..............+...... .++++||++|
T Consensus        82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            46789999999999864322 22333344433   4569999999999866554223333333333333 7999999999


Q ss_pred             CCHHHHHHHHHHHHHhhCC
Q 048059          158 QNINELFYEIAKRLARVSP  176 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~~  176 (198)
                      .|++.+.+.+...+.+...
T Consensus       158 ~n~~~L~~~i~~~Lpeg~~  176 (298)
T COG1159         158 DNVDTLLEIIKEYLPEGPW  176 (298)
T ss_pred             CCHHHHHHHHHHhCCCCCC
Confidence            9999999999887766543

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=3.8e-21  Score=137.64  Aligned_cols=160  Identities=22%  Similarity=0.206  Sum_probs=105.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCcceeEEEEEEEe--CCcEEEEEEEeCCCch
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ----------------EPTIGAAFFTQILSL--SEATVKFDIWDTAGQE   70 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~   70 (198)
                      ..++|+++|+.++|||||+.+|+........                ....+.+.......+  ......+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            3589999999999999999999864321100                000011111222222  2566789999999999


Q ss_pred             hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHH-HHHHHc---
Q 048059           71 RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGE-QFSQEN---  145 (198)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~-~~~~~~---  145 (198)
                      .|.......+..+|++|+|+|+.+.-... ....+..+..   .+.|+++++||+|+...+. ...++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            98888888899999999999998654332 2333333333   3467999999999862110 0011111 332222   


Q ss_pred             ---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          146 ---GMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       146 ---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                         .++++++||.+|.|++++++.|.+.+.
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence               357999999999999999999988653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=7.2e-20  Score=154.04  Aligned_cols=157  Identities=24%  Similarity=0.167  Sum_probs=106.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--------hcccchhh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--------YHSLAPMY   79 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~   79 (198)
                      ....+|+|+|.+|||||||+++|++.... ....+.|.+..............+.+|||||.+.        +......+
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~-iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREA-VVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            34578999999999999999999976532 2223445554444433333445788999999753        23344566


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (198)
                      +..+|++|||+|.++.-...+ ..|...+..   .+.|+++|+||+|+....   ......+....+ ..+++||++|.|
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~G  423 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRG  423 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCC
Confidence            789999999999976422111 234444433   467999999999975321   122222222233 357899999999


Q ss_pred             HHHHHHHHHHHHHh
Q 048059          160 INELFYEIAKRLAR  173 (198)
Q Consensus       160 i~~~~~~l~~~~~~  173 (198)
                      +++++++|++.+.+
T Consensus       424 I~eLl~~i~~~l~~  437 (712)
T PRK09518        424 VGDLLDEALDSLKV  437 (712)
T ss_pred             chHHHHHHHHhccc
Confidence            99999999988754

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.84  E-value=3.5e-20  Score=147.95  Aligned_cols=156  Identities=19%  Similarity=0.180  Sum_probs=104.7

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC---------------------------CCCCcceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIK--GQFYDQ---------------------------QEPTIGAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   57 (198)
                      ....++|+++|+.++|||||+.+|+.  +.....                           .....|.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            45579999999999999999999985  211100                           0011133344444555666


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC---
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNR--ANKLVQELQRQGNQIVVMALAANKSDLDSQRE---  132 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---  132 (198)
                      .+.+.|||+||++.|.......+.++|++++|+|+++.++...  ...++. +.... ...|++|++||+|+.....   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHHHH
Confidence            7789999999998887666667789999999999988753311  111121 22222 2357999999999863221   


Q ss_pred             -CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHH
Q 048059          133 -VPTEEGEQFSQENG-----MFYIETSAKTAQNINELF  164 (198)
Q Consensus       133 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  164 (198)
                       ...+++..+++..+     ++++++||++|.|+.+.+
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence             11345556666554     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=4.8e-20  Score=147.84  Aligned_cols=160  Identities=18%  Similarity=0.142  Sum_probs=104.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-----------ch
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-----------AP   77 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~   77 (198)
                      ..++|+++|.+|+|||||+++|++..... ..+..|.+.......+......+.+|||||.......           ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            46999999999999999999999754321 1122233333333333333456789999996432211           12


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCeEEEEc
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE----NGMFYIETS  153 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~S  153 (198)
                      .+++.+|++|+|+|++++.+..... ++..+..   ...|+++++||+|+..... ..+....+...    ..++++++|
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~~S  325 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVFIS  325 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEEEe
Confidence            3578899999999999876655443 3333332   3468999999999863221 11111222222    357899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhh
Q 048059          154 AKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~  174 (198)
                      |++|.|++++++.+...+...
T Consensus       326 A~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        326 ALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999988765543

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=3.6e-19  Score=122.02  Aligned_cols=158  Identities=24%  Similarity=0.346  Sum_probs=116.6

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCC-------CcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-----QEP-------TIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      .......||+|.|+.++||||+++++........     ...       |...++...  .+ .....+.|++||||+++
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~-~~~~~v~LfgtPGq~RF   81 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--EL-DEDTGVHLFGTPGQERF   81 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EE-cCcceEEEecCCCcHHH
Confidence            3456789999999999999999999987653111     111       111111111  11 22356889999999999


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEE
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN--GMFYI  150 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~  150 (198)
                      .-+|+.+++++.++|+++|.+.+..+ .....++.+.....  .|++|.+||.|+...+.  .+.++++.+..  +.+.+
T Consensus        82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi  156 (187)
T COG2229          82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDALP--PEKIREALKLELLSVPVI  156 (187)
T ss_pred             HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCCC--HHHHHHHHHhccCCCcee
Confidence            99999999999999999999999888 44555555544322  89999999999976543  34454444433  88999


Q ss_pred             EEccCCCCCHHHHHHHHHHH
Q 048059          151 ETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      +.+|.++++..+.++.+...
T Consensus       157 ~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         157 EIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eeecccchhHHHHHHHHHhh
Confidence            99999999999999988765

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.84  E-value=4e-20  Score=147.64  Aligned_cols=156  Identities=20%  Similarity=0.173  Sum_probs=102.9

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC--CC---------------------------CCCCcceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY--DQ---------------------------QEPTIGAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~   57 (198)
                      ..+.++|+++|++++|||||+++|+...-.  ..                           .....|.+.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            456799999999999999999999842111  00                           0012344444555556666


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC----
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQRE----  132 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----  132 (198)
                      .+.+.||||||++.|.......+..+|++|+|+|+++...+ .+...++..+...  ...|+++++||+|+.....    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            78899999999988766555567899999999999863122 1112222222222  2347899999999864221    


Q ss_pred             CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHH
Q 048059          133 VPTEEGEQFSQENG-----MFYIETSAKTAQNINELF  164 (198)
Q Consensus       133 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  164 (198)
                      ...+++..+....+     ++++++||++|.|+++..
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            11234455555444     579999999999998754

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.83  E-value=1.6e-19  Score=126.42  Aligned_cols=150  Identities=20%  Similarity=0.190  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----------hcccchhhhc
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----------YHSLAPMYYR   81 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~~   81 (198)
                      .|+++|++|+|||||++.++++.+.....++.+.+.....+..+.   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996665555556655555444444443   788999999532          3333344443


Q ss_pred             ---CCCeEEEEEECCChhhH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHH--HcCCeEEEE
Q 048059           82 ---GAAAAVVVYDISNMDTF--NRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQ--ENGMFYIET  152 (198)
Q Consensus        82 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~  152 (198)
                         +.+++++++|.+...+.  ..+..|+..      .+.|+++++||+|+......  .........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               46788999998765322  223334332      24689999999998432211  1112222222  334689999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 048059          153 SAKTAQNINELFYEIAKR  170 (198)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~  170 (198)
                      |++++.++.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.83  E-value=1.3e-18  Score=128.17  Aligned_cols=151  Identities=18%  Similarity=0.152  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-------ccchhhhcCCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-------SLAPMYYRGAA   84 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d   84 (198)
                      +|+++|++|+|||||+++|++........+....+.....+.+.  ...+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            78999999999999999999865332222222222223333333  4578899999974322       12335678999


Q ss_pred             eEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------HHh-----------
Q 048059           85 AAVVVYDISNMD-TFNRANKLVQEL-----------------------------------------QRQ-----------  111 (198)
Q Consensus        85 ~~i~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~-----------  111 (198)
                      ++++|+|+++++ ..+.+...++.+                                         .+.           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 333332222111                                         000           


Q ss_pred             -------------CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          112 -------------GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       112 -------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                                   ...-.|+++|+||+|+..     .++...++..  ..++++||+++.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                         012368999999999743     3445555543  4589999999999999999998755

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.83  E-value=1e-19  Score=144.21  Aligned_cols=163  Identities=18%  Similarity=0.142  Sum_probs=105.6

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC---C--CCCCcceeEEE----------------EEEEeCC------cEEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD---Q--QEPTIGAAFFT----------------QILSLSE------ATVK   60 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~---~--~~~~~~~~~~~----------------~~~~~~~------~~~~   60 (198)
                      +..++|+++|..++|||||+++|++...+.   +  ..-|+...+..                .....+.      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            567999999999999999999997642211   1  01111111100                0000011      1457


Q ss_pred             EEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHH
Q 048059           61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEG  138 (198)
Q Consensus        61 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~  138 (198)
                      +.+||+||++.|...+......+|++++|+|++++....+....+..+...  ...|+++++||+|+......  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            899999999999888888888999999999998643112222222233222  23478999999998643211  12333


Q ss_pred             HHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          139 EQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       139 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      .++....   +++++++||++|+|+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            4444332   678999999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=5.2e-19  Score=148.85  Aligned_cols=160  Identities=20%  Similarity=0.167  Sum_probs=106.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----------hccc-c
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----------YHSL-A   76 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~-~   76 (198)
                      ..++|+++|.+|||||||+++|++.... ....+..+.+.....+.+++.  .+.+|||||..+          +..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            3489999999999999999999987642 122233333333334445544  466999999532          1111 1


Q ss_pred             hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEE
Q 048059           77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ-FSQE----NGMFYIE  151 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~  151 (198)
                      ...++.+|++++|+|+++..+.+.... +..+..   .+.|+++|+||+|+.....  .+.... +...    ..+++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            234688999999999998877766543 333332   3579999999999864221  111221 2222    1346799


Q ss_pred             EccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          152 TSAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      +||++|.|++++++.+.+.+.....
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~~  625 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWDQ  625 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999887765443

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.83  E-value=3.4e-19  Score=145.75  Aligned_cols=154  Identities=23%  Similarity=0.187  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCC----CCCcceeEEEEEEE------------eCCcEEEEEEEeCCCchhhcc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQ----EPTIGAAFFTQILS------------LSEATVKFDIWDTAGQERYHS   74 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~l~D~~g~~~~~~   74 (198)
                      .-|+++|++++|||||+++|.+..+....    ..++|..+......            +......+.||||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            45899999999999999999987654321    12233332221110            001112388999999999999


Q ss_pred             cchhhhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC------------CHHH--
Q 048059           75 LAPMYYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV------------PTEE--  137 (198)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~------------~~~~--  137 (198)
                      ++..+++.+|++++|||+++   +++++.+..    +..   .+.|+++++||+|+......            ..+.  
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            99999999999999999987   444444332    221   35799999999998532100            0000  


Q ss_pred             ----------HHHHHHH--------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          138 ----------GEQFSQE--------------NGMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       138 ----------~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                                ...+...              ..++++++||++|+|+++++.+|....
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                      0111110              136899999999999999999987543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=140.26  Aligned_cols=152  Identities=19%  Similarity=0.103  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc---------ccchhhhc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH---------SLAPMYYR   81 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~   81 (198)
                      ..|+|+|.||||||||+|+|++.+.. -...++|++.....-........+.++||+|.+...         ......+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~A-IV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIA-IVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeee-EeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            57999999999999999999987643 222344554444443444445568999999975322         24556678


Q ss_pred             CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCH
Q 048059           82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNI  160 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  160 (198)
                      .||++|||+|....-+-++ +...+.++   ..+.|+++|+||+|...     .+......-.+|. .++.+||.+|.|+
T Consensus        83 eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi  153 (444)
T COG1160          83 EADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGI  153 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence            9999999999875433222 22222233   24579999999999642     2222222334555 6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 048059          161 NELFYEIAKRLA  172 (198)
Q Consensus       161 ~~~~~~l~~~~~  172 (198)
                      .++++.++..+.
T Consensus       154 ~dLld~v~~~l~  165 (444)
T COG1160         154 GDLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHHhhcC
Confidence            999999999873

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.82  E-value=2.9e-19  Score=129.73  Aligned_cols=149  Identities=22%  Similarity=0.188  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------------C---CCCcceeEEEEEEEeCCcEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQ--------------------------Q---EPTIGAAFFTQILSLSEATVKFD   62 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~~   62 (198)
                      ||+|+|++|+|||||+++|+...-...                          .   ....|.+.......+.....++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            689999999999999999975321100                          0   00012233333334444556788


Q ss_pred             EEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC----CHHHH
Q 048059           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV----PTEEG  138 (198)
Q Consensus        63 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~----~~~~~  138 (198)
                      ||||||++.+.......+..+|++|+|+|++++.. +........+...  ...++++++||+|+......    ..++.
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~  157 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY  157 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence            99999998876666667889999999999986532 2222222222221  22357888999998542211    12334


Q ss_pred             HHHHHHcC---CeEEEEccCCCCCHHHH
Q 048059          139 EQFSQENG---MFYIETSAKTAQNINEL  163 (198)
Q Consensus       139 ~~~~~~~~---~~~~~~Sa~~~~~i~~~  163 (198)
                      ..+...++   .+++++||++|.|+.+.
T Consensus       158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         158 LAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            45555555   35899999999998754

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=1.2e-18  Score=142.91  Aligned_cols=161  Identities=14%  Similarity=0.163  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh--CCCCCC------------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK--GQFYDQ------------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL   75 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   75 (198)
                      -.||+|+|+.++|||||+++|+.  +.+...            ...+.+.++......+....+++.+|||||+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            36899999999999999999996  322221            1234566766777777778899999999999999999


Q ss_pred             chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCC
Q 048059           76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQ-------ENGM  147 (198)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~  147 (198)
                      +..+++.+|++|+|+|+++.... +...++..+..   .+.|.++++||+|+...+. ...+++..+..       ...+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            99999999999999999875322 22333333332   3568899999999864331 11233333322       2357


Q ss_pred             eEEEEccCCCC----------CHHHHHHHHHHHHHhh
Q 048059          148 FYIETSAKTAQ----------NINELFYEIAKRLARV  174 (198)
Q Consensus       148 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~  174 (198)
                      +++.+||++|.          ++..+++.|++.+...
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            89999999997          5788888877766533

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=5.4e-19  Score=145.08  Aligned_cols=160  Identities=16%  Similarity=0.202  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG--QFYDQQ------------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA   76 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   76 (198)
                      .||+|+|+.++|||||+++|+..  .+....            ....|.++......+.+..+++.||||||+..|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            48999999999999999999862  221111            1123455555555666677899999999999999899


Q ss_pred             hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCCe
Q 048059           77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQ-------ENGMF  148 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~  148 (198)
                      ..+++.+|++++|+|+++. ...+...|+..+..   .+.|+++++||+|+...+. ...++...+..       ...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            9999999999999999764 34445556655544   3468899999999864332 11233333332       23578


Q ss_pred             EEEEccCCCC----------CHHHHHHHHHHHHHhh
Q 048059          149 YIETSAKTAQ----------NINELFYEIAKRLARV  174 (198)
Q Consensus       149 ~~~~Sa~~~~----------~i~~~~~~l~~~~~~~  174 (198)
                      ++.+||++|.          |+..+|+.|+..+...
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            9999999995          7999999988876543

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.81  E-value=5.7e-19  Score=137.24  Aligned_cols=155  Identities=22%  Similarity=0.178  Sum_probs=109.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMYY   80 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~   80 (198)
                      ..++++++|.||+|||||+|+|++.... --....|++.......+.-..+++.++||+|...-...        ....+
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~A-IVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRA-IVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCce-EecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            3689999999999999999999986533 22233355555555555556677889999997544332        23456


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      .+||.+++|+|.+.+.+-++.. .+.    ....+.|+++|.||.|+.........     ....+.+++.+|+++|+|+
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl  364 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGL  364 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCH
Confidence            8999999999998753222211 111    23466899999999999765442211     1223447899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 048059          161 NELFYEIAKRLARV  174 (198)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (198)
                      +.+.+.|.+.+...
T Consensus       365 ~~L~~~i~~~~~~~  378 (454)
T COG0486         365 DALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999887776

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=5.7e-19  Score=139.92  Aligned_cols=165  Identities=17%  Similarity=0.144  Sum_probs=102.6

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCCCcceeEEEEEE----------------EeC--C----cEE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-----QEPTIGAAFFTQIL----------------SLS--E----ATV   59 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-----~~~~~~~~~~~~~~----------------~~~--~----~~~   59 (198)
                      ..+.++|+++|+.++|||||+.+|.+...+..     ...|+...+....+                ...  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            34569999999999999999999965321111     11111111100000                000  0    135


Q ss_pred             EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHH
Q 048059           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEE  137 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~  137 (198)
                      .+.||||||++.|.........++|++++|+|++++....+....+..+...  ...|+++++||+|+......  ..++
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~  163 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYEQ  163 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence            7899999999887765555566789999999998643111111112222221  22468899999998653321  1233


Q ss_pred             HHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          138 GEQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       138 ~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ...+.+..   +++++++||++|.|+++++++|...+..
T Consensus       164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            44444332   5789999999999999999999887643

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=1.8e-18  Score=134.12  Aligned_cols=164  Identities=18%  Similarity=0.141  Sum_probs=113.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-----------ch
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-----------AP   77 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~   77 (198)
                      ..++|+|+|.|++|||||+|+|+++... -..+..|++.......+..+..++.++||+|..+-...           ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~-Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERV-IVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceE-EecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            4699999999999999999999986643 23344566666666666656667889999997433222           22


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEE
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-----NGMFYIET  152 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~  152 (198)
                      ..+..+|++++|+|++.+-+-++.. ....+.+   ...+++|++||+|+.+.+....++.+.....     ..++++.+
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            3457899999999998765443332 2222222   4458999999999876543433433332222     24589999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          153 SAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      ||++|.+++++|+.+..........
T Consensus       332 SA~~~~~i~~l~~~i~~~~~~~~~r  356 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYECATRR  356 (444)
T ss_pred             EecCCCChHHHHHHHHHHHHHhccc
Confidence            9999999999999987755544443

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=2.7e-18  Score=120.19  Aligned_cols=158  Identities=16%  Similarity=0.168  Sum_probs=114.1

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc----------hhhccc
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ----------ERYHSL   75 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~   75 (198)
                      +......|+++|.+|||||||||+|++.+.-...+.|+|.+.....+.+++.   +.++|.||.          +.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            4445689999999999999999999997766777888999988888887775   669999995          345555


Q ss_pred             chhhhc---CCCeEEEEEECCChhhHHHH--HHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH----cC
Q 048059           76 APMYYR---GAAAAVVVYDISNMDTFNRA--NKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE----NG  146 (198)
Q Consensus        76 ~~~~~~---~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~  146 (198)
                      ...|+.   +-.++++++|+..+-.-.+.  -.|+..      .+.|++|++||+|.....+.. ......+..    ..
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~------~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~  169 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE------LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPP  169 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCC
Confidence            666663   46778889998765443222  233332      567999999999986544332 122222222    23


Q ss_pred             Ce--EEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          147 MF--YIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       147 ~~--~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ..  ++.+|+.++.|++++...|...+.+
T Consensus       170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         170 DDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            33  7888999999999999998887654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=2.4e-18  Score=141.91  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQF---YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      -|.++|+.++|||||+++|++...   ..+....+..+.....+... ....+.+||+||++.|.......+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            478999999999999999996432   22222222222212222222 23357899999999987777777889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC---CeEEEEccCCCCCHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQENG---MFYIETSAKTAQNINEL  163 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~  163 (198)
                      |+|+++... .+....+..+...  ...+++||+||+|+.+....  ..++..++....+   ++++++||++|.|++++
T Consensus        81 VVda~eg~~-~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L  157 (614)
T PRK10512         81 VVACDDGVM-AQTREHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDAL  157 (614)
T ss_pred             EEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence            999876321 2222222222222  22346799999998643221  1234445544444   68999999999999999


Q ss_pred             HHHHHHHHH
Q 048059          164 FYEIAKRLA  172 (198)
Q Consensus       164 ~~~l~~~~~  172 (198)
                      ++.|.....
T Consensus       158 ~~~L~~~~~  166 (614)
T PRK10512        158 REHLLQLPE  166 (614)
T ss_pred             HHHHHHhhc
Confidence            999986543

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.80  E-value=3.1e-18  Score=122.74  Aligned_cols=147  Identities=17%  Similarity=0.138  Sum_probs=97.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC---------C-----CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFY---------D-----QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL   75 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   75 (198)
                      .++|+++|..++|||||+++|++....         .     ......|.+.......+.....++.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            589999999999999999999863100         0     00012234444445555566678899999999888777


Q ss_pred             chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc-----C
Q 048059           76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQEN-----G  146 (198)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~  146 (198)
                      ....+..+|++++|+|++..-. .+....+..+...   +.| +++++||.|+....+.   ..+++..+....     +
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            7777889999999999876432 2223333333332   344 7788999998532211   122344444433     3


Q ss_pred             CeEEEEccCCCCCH
Q 048059          147 MFYIETSAKTAQNI  160 (198)
Q Consensus       147 ~~~~~~Sa~~~~~i  160 (198)
                      ++++++||++|.|+
T Consensus       158 v~iipiSa~~g~n~  171 (195)
T cd01884         158 TPIVRGSALKALEG  171 (195)
T ss_pred             CeEEEeeCccccCC
Confidence            68999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.79  E-value=6.5e-19  Score=139.26  Aligned_cols=167  Identities=24%  Similarity=0.288  Sum_probs=123.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...++|+++|..|+||||||..|+...+...-.+-...-  .....+....+...++|++..+.-+....+.++.||++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i--~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI--LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc--ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            457999999999999999999999988765543322211  111234445566889999876665556677889999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHH-HHHHHHHcC-C-eEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRA-NKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEE-GEQFSQENG-M-FYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~i~  161 (198)
                      +||+.+++++++.+ ..|+..+++..+  .+.|+|+||||+|.........+. ...+...+. + ..++|||++-.++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~  164 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS  164 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence            99999999999999 479998888643  679999999999986544432222 333333322 2 47899999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 048059          162 ELFYEIAKRLARVSP  176 (198)
Q Consensus       162 ~~~~~l~~~~~~~~~  176 (198)
                      ++|....+++.....
T Consensus       165 e~fYyaqKaVihPt~  179 (625)
T KOG1707|consen  165 ELFYYAQKAVIHPTS  179 (625)
T ss_pred             hhhhhhhheeeccCc
Confidence            999998776654433

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.79  E-value=2.5e-18  Score=115.27  Aligned_cols=135  Identities=21%  Similarity=0.253  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc----hhhcccchhhhcCCCeEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ----ERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~i   87 (198)
                      ||+++|+.|||||||+++|.+...  .+..|....+       .     =.++||||.    ..+....-....+||.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------Y-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------c-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999987553  2333322221       1     136899995    223333333446899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFYE  166 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  166 (198)
                      ++.|++++.+.-.     ..+...  -..|++=|+||+|+... ....+.++++.+.-|+ .+|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998754211     011111  23589999999998732 3345777788888888 6899999999999999998


Q ss_pred             HH
Q 048059          167 IA  168 (198)
Q Consensus       167 l~  168 (198)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.78  E-value=9.3e-18  Score=137.78  Aligned_cols=155  Identities=25%  Similarity=0.243  Sum_probs=100.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CCcceeEEEEEEE--eCCcE-----E-----EEEEEeCCCchhhc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQE----PTIGAAFFTQILS--LSEAT-----V-----KFDIWDTAGQERYH   73 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~g~~~~~   73 (198)
                      ...|+++|++++|||||+++|.+........    +++|.++......  ..+..     .     .+.||||||++.|.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            4579999999999999999998654322211    1233222211110  00111     1     26899999999999


Q ss_pred             ccchhhhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--C--------------
Q 048059           74 SLAPMYYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--P--------------  134 (198)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~--------------  134 (198)
                      .++...+..+|++++|+|+++   +++++.+..    +..   .+.|+++++||+|+......  .              
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v  158 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV  158 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence            988888899999999999987   555554432    221   35789999999998421110  0              


Q ss_pred             HH-------HHHHHHHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          135 TE-------EGEQFSQE---------------NGMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       135 ~~-------~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      .+       +...+...               ..++++++||++|.|+++++..+...+
T Consensus       159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            00       00011111               135799999999999999998886533

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=9.8e-19  Score=127.94  Aligned_cols=148  Identities=18%  Similarity=0.164  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--C---------------------------CCCCCCcceeEEEEEEEeCCcEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQF--Y---------------------------DQQEPTIGAAFFTQILSLSEATVKFD   62 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (198)
                      +|+++|++++|||||+.+|+...-  .                           .......|.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999864210  0                           00001123333344445555667899


Q ss_pred             EEeCCCchhhcccchhhhcCCCeEEEEEECCChhh------HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC--CCC-
Q 048059           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT------FNRANKLVQELQRQGNQIVVMALAANKSDLDSQ--REV-  133 (198)
Q Consensus        63 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~-  133 (198)
                      +|||||+..+...+...+..+|++|+|+|+++...      ..+....+......  ...|+++++||.|+...  ... 
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence            99999998777766677788999999999987421      11122222222221  23589999999998632  111 


Q ss_pred             ---CHHHHHHHHHHc-----CCeEEEEccCCCCCHH
Q 048059          134 ---PTEEGEQFSQEN-----GMFYIETSAKTAQNIN  161 (198)
Q Consensus       134 ---~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~  161 (198)
                         ..+++..+....     +++++++||++|.|++
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence               112222233333     3679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=4.9e-18  Score=125.33  Aligned_cols=113  Identities=18%  Similarity=0.193  Sum_probs=82.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--------C-----CC---CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFY--------D-----QQ---EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL   75 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   75 (198)
                      +|+++|++|+|||||+++|+...-.        .     .+   ....+.+.......+.....++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999863111        0     00   011223333444555666788999999999999888


Q ss_pred             chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      +..+++.+|++++|+|.++.... ....++..+..   .+.|+++++||.|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence            88999999999999999876432 33445555443   357899999999984

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.78  E-value=6.8e-18  Score=133.46  Aligned_cols=149  Identities=16%  Similarity=0.111  Sum_probs=97.2

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCC------CC--------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQF------YD--------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      +..+.++|+++|+.++|||||+++|++...      ..        ......|.+.....+.+......+.||||||+++
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            456689999999999999999999984210      00        0001123444455555666667889999999998


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC-
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVP---TEEGEQFSQENG-  146 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~-  146 (198)
                      |.........++|++++|+|+++....+ ....+..+...   ..| +++++||+|+....+..   .+++..+....+ 
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            8765555667889999999998642222 22222333322   345 55789999986432211   234555665554 


Q ss_pred             ----CeEEEEccCCCC
Q 048059          147 ----MFYIETSAKTAQ  158 (198)
Q Consensus       147 ----~~~~~~Sa~~~~  158 (198)
                          ++++++||.+|.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       164 PGDDTPIIRGSALKAL  179 (394)
T ss_pred             CccCccEEECcccccc
Confidence                789999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.77  E-value=1e-17  Score=132.33  Aligned_cols=162  Identities=18%  Similarity=0.137  Sum_probs=105.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYD--------------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      ....++|+++|+.++|||||+++|++.....              ......|.+.......+......+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            4567999999999999999999998631100              00012244444455556556667899999999888


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC--
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVP---TEEGEQFSQENG--  146 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~--  146 (198)
                      .......+..+|++++|+|+++...-. ...++..+...   +.| +++++||+|+....+..   .++...+....+  
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            766666678899999999987642222 22233333332   345 67889999986332221   224444444444  


Q ss_pred             ---CeEEEEccCCCC--------CHHHHHHHHHHHHH
Q 048059          147 ---MFYIETSAKTAQ--------NINELFYEIAKRLA  172 (198)
Q Consensus       147 ---~~~~~~Sa~~~~--------~i~~~~~~l~~~~~  172 (198)
                         ++++++||++|.        ++.++++.|...+.
T Consensus       165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence               589999999983        46677766665543

>COG2262 HflX GTPases [General function prediction only]

Probab=99.76  E-value=4.1e-17  Score=124.95  Aligned_cols=162  Identities=21%  Similarity=0.181  Sum_probs=113.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh--cccchh------hh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY--HSLAPM------YY   80 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------~~   80 (198)
                      .-..|.++|.+|+|||||+|+|++........-....+-....+.+.+ ...+.+.||.|.-+.  ..+..+      ..
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            347899999999999999999997654433222222222244444554 446789999995211  111222      23


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      ..+|+++.|+|++++...+.++.....+........|+++|.||.|+.....    .......... ..+.+||++|.|+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl  344 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGL  344 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCH
Confidence            5799999999999998888888888888887667799999999999754332    1111111122 5899999999999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 048059          161 NELFYEIAKRLARVSP  176 (198)
Q Consensus       161 ~~~~~~l~~~~~~~~~  176 (198)
                      +.+++.|...+.....
T Consensus       345 ~~L~~~i~~~l~~~~~  360 (411)
T COG2262         345 DLLRERIIELLSGLRT  360 (411)
T ss_pred             HHHHHHHHHHhhhccc
Confidence            9999999988876544

>cd04167 Snu114p Snu114p subfamily

Probab=99.76  E-value=7.9e-18  Score=122.73  Aligned_cols=113  Identities=24%  Similarity=0.255  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------CCCcceeEEEEEEEe-----CCcEEEEEEEeCCCc
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQ-----------------EPTIGAAFFTQILSL-----SEATVKFDIWDTAGQ   69 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~   69 (198)
                      +|+|+|+.|+|||||+++|+........                 ....+.++......+     .+..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            7899999999999999999874432110                 011122222222211     355688999999999


Q ss_pred             hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      ..+......++..+|++++|+|+++..+... ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9988888888999999999999987665433 333333322   347999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.76  E-value=3.5e-17  Score=129.40  Aligned_cols=162  Identities=18%  Similarity=0.144  Sum_probs=104.1

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCC-----C----C-----CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQF-----Y----D-----QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~-----~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      ...+.++|+++|++++|||||+++|++...     .    .     ......|.+.......+......+.|+||||++.
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            345679999999999999999999986210     0    0     0011223444444445555566789999999988


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM-ALAANKSDLDSQREV---PTEEGEQFSQENG-  146 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-  146 (198)
                      |.......+..+|++++|+|+.+... .+...++..+..   ...|. ++++||+|+....+.   ..+++..+...++ 
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            77666667788999999999976432 222233333332   23564 467999998642221   1224445555443 


Q ss_pred             ----CeEEEEccCCCC----------CHHHHHHHHHHHH
Q 048059          147 ----MFYIETSAKTAQ----------NINELFYEIAKRL  171 (198)
Q Consensus       147 ----~~~~~~Sa~~~~----------~i~~~~~~l~~~~  171 (198)
                          ++++++||.+|.          ++.++++.|...+
T Consensus       164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence                679999999984          5666666666543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.76  E-value=3.9e-17  Score=132.17  Aligned_cols=158  Identities=20%  Similarity=0.176  Sum_probs=113.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc------cchhhh--c
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS------LAPMYY--R   81 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~   81 (198)
                      ..+|+++|+||+|||||.|+|++........|....+  .++-.+..+..+++++|.||.-....      ....|+  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVE--kkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVE--KKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEE--EEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            4679999999999999999999988877777765555  44444444444578999999632222      222333  4


Q ss_pred             CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059           82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      +.|+++-|+|+++.+.--.+.   -++.+   -+.|++++.|+.|..+.+.+ .-+.+++.+.+|+|++++||++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeRnLylt---lQLlE---~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYLT---LQLLE---LGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHHHHHHH---HHHHH---cCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            579999999998765322221   12222   34689999999998655444 344677888899999999999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 048059          162 ELFYEIAKRLARVSP  176 (198)
Q Consensus       162 ~~~~~l~~~~~~~~~  176 (198)
                      ++.+.+.+.......
T Consensus       154 ~l~~~i~~~~~~~~~  168 (653)
T COG0370         154 ELKRAIIELAESKTT  168 (653)
T ss_pred             HHHHHHHHhcccccc
Confidence            999998876555443

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.74  E-value=6.4e-17  Score=116.54  Aligned_cols=158  Identities=16%  Similarity=0.145  Sum_probs=95.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcce---eEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh-----hc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGA---AFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY-----YR   81 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~-----~~   81 (198)
                      .+||+++|.+|+|||||+|+|++.........+.+.   +.....+... ....+.+||+||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            378999999999999999999986543322222221   1111111111 12368899999975332222222     56


Q ss_pred             CCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-----------CCHHHHHHHHH----Hc
Q 048059           82 GAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQRE-----------VPTEEGEQFSQ----EN  145 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-----------~~~~~~~~~~~----~~  145 (198)
                      ++|+++++.+.    .+... ..|+..+...   ..|+++|+||+|+.....           ...++..+.+.    ..
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78998888542    23333 3455555443   468999999999832111           11112222222    11


Q ss_pred             C---CeEEEEccC--CCCCHHHHHHHHHHHHHhhC
Q 048059          146 G---MFYIETSAK--TAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       146 ~---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~  175 (198)
                      +   -++|.+|+.  .+.|+..+.+.|+..+.+..
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence            2   268899998  57899999999999887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.74  E-value=1.1e-16  Score=117.11  Aligned_cols=153  Identities=14%  Similarity=0.148  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------------CcceeEEEEE-------------EEeC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEP-----------------------TIGAAFFTQI-------------LSLS   55 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~   55 (198)
                      ||+++|+.++|||||+++|..+.+......                       ..|.+.....             ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999997654321110                       0111110000             0111


Q ss_pred             CcEEEEEEEeCCCchhhcccchhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC
Q 048059           56 EATVKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV  133 (198)
Q Consensus        56 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  133 (198)
                      .....+.++|+||+++|.......+.  .+|++++|+|++.+.. .....++..+..   .+.|+++++||+|+......
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            22456889999999888654444443  6899999999876433 222333333333   34689999999998532211


Q ss_pred             --CHHHHHHHHH--------------------------HcCCeEEEEccCCCCCHHHHHHHHH
Q 048059          134 --PTEEGEQFSQ--------------------------ENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus       134 --~~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                        ..++..++.+                          ...+++|.+|+.+|+|++++...|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence              1112222221                          1124899999999999999988764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>CHL00071 tufA elongation factor Tu

Probab=99.73  E-value=1.2e-16  Score=126.92  Aligned_cols=151  Identities=15%  Similarity=0.113  Sum_probs=98.9

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCC--------------CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFY--------------DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      .....++|+++|++++|||||+++|++..-.              .......|.+.......+......+.|+||||+..
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            3466799999999999999999999974110              00011134444444445555566788999999988


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQENG-  146 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-  146 (198)
                      |.......+..+|++++|+|+..... .+....+..+..   .+.| +++++||.|+....+.   ..+++..+.+..+ 
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            87766777889999999999876432 222333333332   2346 7788999998642221   1123444444433 


Q ss_pred             ----CeEEEEccCCCCCH
Q 048059          147 ----MFYIETSAKTAQNI  160 (198)
Q Consensus       147 ----~~~~~~Sa~~~~~i  160 (198)
                          ++++++||.+|.++
T Consensus       164 ~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        164 PGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCcceEEEcchhhcccc
Confidence                68999999998743

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.73  E-value=5e-17  Score=118.52  Aligned_cols=164  Identities=16%  Similarity=0.214  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcc-----cchhhhcCCCe
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHS-----LAPMYYRGAAA   85 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~   85 (198)
                      ||+++|+.+|||||+.+.+..+..+.+. ...+.+.......+ ....+.+.+||+||+..+..     ..+..++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            7999999999999999888876544332 12222222222223 23456789999999965543     45677899999


Q ss_pred             EEEEEECCChhhHHHHH---HHHHHHHHhCCCCceEEEEEeCCCCCCCC--CC----CHHHHHHHHHHcC---CeEEEEc
Q 048059           86 AVVVYDISNMDTFNRAN---KLVQELQRQGNQIVVMALAANKSDLDSQR--EV----PTEEGEQFSQENG---MFYIETS  153 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~----~~~~~~~~~~~~~---~~~~~~S  153 (198)
                      +|||+|+.+.+-.+++.   ..+..+.+. +++..+-+++.|.|+..+.  ..    ..+.+.+.+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            99999998444444444   444444444 4778899999999985321  11    1233333344445   7899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCCCC
Q 048059          154 AKTAQNINELFYEIAKRLARVSPPK  178 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~~~~  178 (198)
                      ..+ +.+-++|..+++.+.+..+.-
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~l  182 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLSTL  182 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHHH
Confidence            998 579999999999988766543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=2.8e-16  Score=117.83  Aligned_cols=115  Identities=16%  Similarity=0.178  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC--CCC---------------CCC---CcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQF--YDQ---------------QEP---TIGAAFFTQILSLSEATVKFDIWDTAGQE   70 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~--~~~---------------~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   70 (198)
                      .+|+|+|++|+|||||+++|+...-  ...               +.+   ..+.++......+....+++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            5899999999999999999985211  100               000   01233444555666778899999999999


Q ss_pred             hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           71 RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      +|.......++.+|++|+|+|+++... .....++.....   .+.|+++++||+|+..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            888777778899999999999986533 222334433322   4578999999999754

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.73  E-value=1.1e-16  Score=116.65  Aligned_cols=113  Identities=18%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC--CCC------------CCCcceeEE--EEEEEeC--------CcEEEEEEEeCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFY--DQQ------------EPTIGAAFF--TQILSLS--------EATVKFDIWDTA   67 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~--~~~------------~~~~~~~~~--~~~~~~~--------~~~~~~~l~D~~   67 (198)
                      +|+++|+.++|||||+.+|+...-.  ...            ...-|.+..  ...+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            7999999999999999999853211  000            000011111  1112222        347889999999


Q ss_pred             CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      |+..|......+++.+|++++|+|+++....+... .+.....   .+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCcc
Confidence            99999999999999999999999998765444322 2222222   346899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.72  E-value=3.5e-16  Score=115.41  Aligned_cols=170  Identities=18%  Similarity=0.134  Sum_probs=110.1

Q ss_pred             CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh------------
Q 048059            4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER------------   71 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------------   71 (198)
                      +.+..+.++|+|+|.||+|||||.|.+.+.+.......+..++. ...-.+..+..++.|+||||--.            
T Consensus        66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~-~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s  144 (379)
T KOG1423|consen   66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH-RILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS  144 (379)
T ss_pred             chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee-eeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence            34567789999999999999999999999887665544433332 33334556678899999999421            


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC-------------CCC--HH
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR-------------EVP--TE  136 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-------------~~~--~~  136 (198)
                      ...........||.+++++|+++....-. ...+..+..+  .+.|-+++.||.|...++             ++.  ..
T Consensus       145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl  221 (379)
T KOG1423|consen  145 VLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL  221 (379)
T ss_pred             hhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence            01122344578999999999986432211 1223333333  457889999999974322             111  01


Q ss_pred             HH-HHHHHH---------cCC----eEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          137 EG-EQFSQE---------NGM----FYIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       137 ~~-~~~~~~---------~~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      +. .++...         .++    .+|.+||++|+|++++-++|+..+....-.
T Consensus       222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~  276 (379)
T KOG1423|consen  222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK  276 (379)
T ss_pred             hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence            11 111111         123    289999999999999999999877655443

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.72  E-value=2.1e-16  Score=117.05  Aligned_cols=156  Identities=16%  Similarity=0.126  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----cch---hhhcCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----LAP---MYYRGA   83 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~~---~~~~~~   83 (198)
                      ..|.++|.||+|||||+++|+..+......+.++..-..-.+++++ ...+.+=|.||.-+-..    +-.   ..++.+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            4678999999999999999998665433322211111111223333 22388999998532222    222   335789


Q ss_pred             CeEEEEEECCCh---hhHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccCCC
Q 048059           84 AAAVVVYDISNM---DTFNRANKLVQELQRQG--NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTA  157 (198)
Q Consensus        84 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~  157 (198)
                      +.++||+|++.+   ..+++++.+...+..+.  -...|.+||+||+|+++..   .....++++.+.-+ ++++||+.+
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence            999999999988   88888887777776542  2567999999999985221   23346666666544 899999999


Q ss_pred             CCHHHHHHHHHHH
Q 048059          158 QNINELFYEIAKR  170 (198)
Q Consensus       158 ~~i~~~~~~l~~~  170 (198)
                      +|+.++++.|.+.
T Consensus       353 egl~~ll~~lr~~  365 (366)
T KOG1489|consen  353 EGLEELLNGLREL  365 (366)
T ss_pred             cchHHHHHHHhhc
Confidence            9999999987653

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=3.3e-16  Score=116.80  Aligned_cols=161  Identities=17%  Similarity=0.167  Sum_probs=110.6

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch-----hhcc----cchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE-----RYHS----LAPM   78 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~----~~~~   78 (198)
                      .....|+|.|.||||||||++.+++........|...-....-  ++..+...++++||||.-     +.+.    ...+
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe--eeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            3457899999999999999999999876655555433222222  344456688999999951     1111    1111


Q ss_pred             hhcCCCeEEEEEECC--ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccC
Q 048059           79 YYRGAAAAVVVYDIS--NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAK  155 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~  155 (198)
                      .-.-.++++|+||.+  ...+++....++..+.....  .|+++|.||.|.......  +++......- +.....+++.
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence            223478899999986  45677888889999988754  799999999998654433  3333333333 3347788999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q 048059          156 TAQNINELFYEIAKRLARV  174 (198)
Q Consensus       156 ~~~~i~~~~~~l~~~~~~~  174 (198)
                      .+.+++.+...+.....+.
T Consensus       320 ~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         320 KGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             ehhhHHHHHHHHHHHhhch
Confidence            9999998888877765544

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.72  E-value=3.2e-16  Score=125.25  Aligned_cols=153  Identities=15%  Similarity=0.188  Sum_probs=103.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCC--CC------------------------C---CCCCcceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQF--YD------------------------Q---QEPTIGAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~--~~------------------------~---~~~~~~~~~~~~~~~~~~~   57 (198)
                      ..+.++|+++|+.++|||||+.+|+...-  ..                        .   ....-|.+.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            45679999999999999999999874210  00                        0   0011133444445556667


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHH-------HHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFN-------RANKLVQELQRQGNQIVVMALAANKSDLDSQ  130 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (198)
                      ...+.++|+||+++|.......+..+|++|+|+|+++. .++       +....+..+...  .-.++++++||.|+...
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~--gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL--GVKQMICCCNKMDATTP  160 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc--CCCcEEEEEEcccCCch
Confidence            78899999999999998888889999999999999863 232       333333222221  22357889999997521


Q ss_pred             C------CCCHHHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 048059          131 R------EVPTEEGEQFSQENG-----MFYIETSAKTAQNINE  162 (198)
Q Consensus       131 ~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (198)
                      .      ....+++..+.+..+     ++++++||.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            1      112345666666655     6799999999999853

>cd01850 CDC_Septin CDC/Septin

Probab=99.71  E-value=3.4e-16  Score=117.94  Aligned_cols=143  Identities=11%  Similarity=0.105  Sum_probs=91.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQ----------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----   74 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----   74 (198)
                      ..++|+|+|.+|+|||||+++|++..+...          ..++.+.......+..++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998765433          233334444444555566778999999999432111    


Q ss_pred             ----------------------cchhhhc--CCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           75 ----------------------LAPMYYR--GAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        75 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                                            .....+.  .+|+++|+++.+.. .+... ...+..+.    ...|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence                                  1112222  46778888876541 12111 22233332    2578999999999854


Q ss_pred             C--CCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059          130 Q--REVPTEEGEQFSQENGMFYIETSAKT  156 (198)
Q Consensus       130 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (198)
                      .  .....+...+.+..+++++|......
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            2  22335556777778899988876644

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.71  E-value=2.8e-16  Score=126.50  Aligned_cols=154  Identities=19%  Similarity=0.131  Sum_probs=96.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CCC------------------CcceeEEEEEEEeC
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-------------QEP------------------TIGAAFFTQILSLS   55 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~   55 (198)
                      ....++|+++|++++|||||+.+|+...-.-.             ...                  .-|.+.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            45679999999999999999999985321000             000                  01222333334445


Q ss_pred             CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH
Q 048059           56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT  135 (198)
Q Consensus        56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  135 (198)
                      ....++.|+||||++.|.......+..+|++++|+|++....-...+.+ ..+...  ...|+++++||+|+........
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l--g~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL--GIKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh--CCCceEEEEEeeccccchhHHH
Confidence            5566889999999988865555557899999999998754321111111 112222  1247889999999864322111


Q ss_pred             HHH----HHHHHHc----CCeEEEEccCCCCCHHHH
Q 048059          136 EEG----EQFSQEN----GMFYIETSAKTAQNINEL  163 (198)
Q Consensus       136 ~~~----~~~~~~~----~~~~~~~Sa~~~~~i~~~  163 (198)
                      ++.    ..+.+..    .++++++||++|.|+.+.
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            222    2223333    368999999999998764

>PRK00049 elongation factor Tu; Reviewed

Probab=99.71  E-value=4.2e-16  Score=123.20  Aligned_cols=160  Identities=17%  Similarity=0.122  Sum_probs=102.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC---C-----------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY---D-----------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      ....++|+++|+.++|||||+++|++....   .           ......|.+.......+......+.++||||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            466799999999999999999999873110   0           00012244444445555556677889999999887


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCCCCCCC---CHHHHHHHHHHc---
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMA-LAANKSDLDSQREV---PTEEGEQFSQEN---  145 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~---~~~~~~~~~~~~---  145 (198)
                      .......+..+|++++|+|+..... .+...++..+..   ...|.+ +++||.|+......   ...++..+....   
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            7666677789999999999976432 222333333333   235764 68999998642211   112333333332   


Q ss_pred             --CCeEEEEccCCCC----------CHHHHHHHHHHH
Q 048059          146 --GMFYIETSAKTAQ----------NINELFYEIAKR  170 (198)
Q Consensus       146 --~~~~~~~Sa~~~~----------~i~~~~~~l~~~  170 (198)
                        +++++++||+++.          ++.++++.|...
T Consensus       165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence              3689999999875          345555555543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.69  E-value=6.2e-16  Score=122.67  Aligned_cols=149  Identities=21%  Similarity=0.181  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CC------------------CCcceeEEEEEEEeCCcEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQ-------------QE------------------PTIGAAFFTQILSLSEATV   59 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~~   59 (198)
                      ++|+++|+.++|||||+.+|+...-...             ..                  ..-|.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999974211000             00                  0112223333444445566


Q ss_pred             EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC----H
Q 048059           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP----T  135 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~  135 (198)
                      ++.|+||||++.|.......+..+|++++|+|+.....-+. ...+..+...  ...++++++||+|+.......    .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHHH
Confidence            88999999999887666667889999999999875432221 1122222222  234688999999986422211    1


Q ss_pred             HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 048059          136 EEGEQFSQENG---MFYIETSAKTAQNINE  162 (198)
Q Consensus       136 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  162 (198)
                      ++...+.+..+   ++++++||++|+|+++
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            22223333333   4799999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03127 Elongation factor Tu; Provisional

Probab=99.69  E-value=6.9e-16  Score=123.25  Aligned_cols=162  Identities=16%  Similarity=0.121  Sum_probs=100.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhC------CCCC--------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKG------QFYD--------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      .....++|+++|+.++|||||+++|++.      ....        ......|.+.......+.....++.|+||||+..
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            3456799999999999999999999732      1000        0011124444455555666667889999999987


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCCC---HHHHHHHHHHc--
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVP---TEEGEQFSQEN--  145 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~--  145 (198)
                      |..........+|++++|+|+++... .+....+..+..   .+.| +++++||+|+.+..+..   .++..++....  
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            76655556678999999999876432 222333333333   2356 57889999986422211   11222333222  


Q ss_pred             ---CCeEEEEccC---CCCC-------HHHHHHHHHHHH
Q 048059          146 ---GMFYIETSAK---TAQN-------INELFYEIAKRL  171 (198)
Q Consensus       146 ---~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~  171 (198)
                         .++++++|+.   +|.|       +.++++.|...+
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence               3678888875   4554       566666666544

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=1.1e-15  Score=124.09  Aligned_cols=117  Identities=17%  Similarity=0.245  Sum_probs=82.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh--CCCCC----------C-C-------CCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK--GQFYD----------Q-Q-------EPTIGAAFFTQILSLSEATVKFDIWDTA   67 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~~~----------~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~   67 (198)
                      ....+|+|+|++++|||||+++|+.  +....          . .       ....|.++......+....+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3457999999999999999999974  11000          0 0       0111333444445566667889999999


Q ss_pred             CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      |+..|......++..+|++|+|+|+++... .....++.....   .+.|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            999888877778899999999999986532 223344433322   467999999999974

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.2e-16  Score=120.35  Aligned_cols=150  Identities=17%  Similarity=0.137  Sum_probs=93.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CC----------cceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQE------PT----------IGAAFFTQILSLSEATVKFDIWDTAGQERYHSL   75 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   75 (198)
                      +|+++|++|+|||||+++|+.........      .+          .+.........+....+.+.+|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997532110000      00          011112222333445577899999999888778


Q ss_pred             chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEE--EEc
Q 048059           76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYI--ETS  153 (198)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~S  153 (198)
                      +...+..+|++++|+|.++.........| ..+..   .+.|+++++||.|+....  ..+....+...++.+++  .++
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip  154 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP  154 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence            88899999999999999876544333323 22322   357899999999986432  22334444445555443  344


Q ss_pred             cCCCCCHHHHHHHH
Q 048059          154 AKTAQNINELFYEI  167 (198)
Q Consensus       154 a~~~~~i~~~~~~l  167 (198)
                      ..++.++..+.+.+
T Consensus       155 ~~~~~~~~~~vd~~  168 (268)
T cd04170         155 IGEGDDFKGVVDLL  168 (268)
T ss_pred             ccCCCceeEEEEcc
Confidence            55555554444443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN03126 Elongation factor Tu; Provisional

Probab=99.68  E-value=7.5e-16  Score=123.73  Aligned_cols=149  Identities=17%  Similarity=0.119  Sum_probs=97.3

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCC------CCC--------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ------FYD--------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      ....++|+++|++++|||||+++|++..      ...        ......|.+.......+......+.|+|+||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            4567999999999999999999999521      000        01112233333334444445567899999999988


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc---
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQEN---  145 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~---  145 (198)
                      .......+..+|++++|+|+.+... .+...++..+...   ..| +++++||.|+....+.   ..+++..+.+..   
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~  233 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence            7777777789999999999886533 2223333333332   345 7788999998542211   112344444443   


Q ss_pred             --CCeEEEEccCCCCC
Q 048059          146 --GMFYIETSAKTAQN  159 (198)
Q Consensus       146 --~~~~~~~Sa~~~~~  159 (198)
                        +++++++|+.++.+
T Consensus       234 ~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        234 GDDIPIISGSALLALE  249 (478)
T ss_pred             cCcceEEEEEcccccc
Confidence              46799999998854

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.68  E-value=2.9e-15  Score=107.91  Aligned_cols=164  Identities=16%  Similarity=0.174  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------c---chhh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------L---APMY   79 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~---~~~~   79 (198)
                      ++|+++|.+|||||||+|.|++...........+.+..............+.++||||......        +   ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999998764322211112222111211122345788999999643211        1   1122


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCCCCCCC------CHHHHHHHHHHcCCeEEE
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ--IVVMALAANKSDLDSQREV------PTEEGEQFSQENGMFYIE  151 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~  151 (198)
                      ..+.|++|+|+++.+ .+- .....++.+....+.  -.+++++.|+.|.......      .....+.+.+..+-.++.
T Consensus        81 ~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            357899999999876 221 222333444333221  2478899999996433211      113445555555656655


Q ss_pred             Ecc-----CCCCCHHHHHHHHHHHHHhhCC
Q 048059          152 TSA-----KTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       152 ~Sa-----~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      .+.     ..+.++.++++.+.+.+.+..+
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~  188 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKENGG  188 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence            554     4567899999998887776443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.67  E-value=7.2e-16  Score=123.06  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=104.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCC---C--CCCCcceeEEEEE-------------EEeCC-----------
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYD---Q--QEPTIGAAFFTQI-------------LSLSE-----------   56 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~---~--~~~~~~~~~~~~~-------------~~~~~-----------   56 (198)
                      ..+..++|.++|+...|||||+.+|++.....   +  ..-|+...+....             .....           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            34668999999999999999999999743211   1  1111111111100             00000           


Q ss_pred             -----cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           57 -----ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        57 -----~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                           -...+.|+|+||++.|..........+|++++|+|++.+....+....+..+...  ...++++++||+|+....
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHH
Confidence                 0236889999999988777677778999999999998642112222222222222  234788999999986422


Q ss_pred             CC--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          132 EV--PTEEGEQFSQE---NGMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       132 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ..  ..++..++...   .+++++++||++|.|++.+++.|...+..
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            11  12233333322   36789999999999999999998875543

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=6.5e-16  Score=116.00  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=79.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC--CC-----------C---CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQF--YD-----------Q---QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL   75 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~--~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   75 (198)
                      +|+++|++|+|||||+++|+...-  ..           .   .....+.+.......+.....++.+|||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999974211  00           0   0011233444444455556778999999999888888


Q ss_pred             chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      +...++.+|++|+|+|+.+...-. ....+..+..   .+.|+++++||.|+..
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            889999999999999997653222 2233333332   3468999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.67  E-value=1.4e-15  Score=126.91  Aligned_cols=153  Identities=19%  Similarity=0.158  Sum_probs=95.2

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CCC------------------CcceeEEEEEEEeC
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-------------QEP------------------TIGAAFFTQILSLS   55 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~   55 (198)
                      ....++|+++|++++|||||+++|+...-.-.             ...                  .-|.+.......+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            44568999999999999999999986321100             000                  01222222233344


Q ss_pred             CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH
Q 048059           56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT  135 (198)
Q Consensus        56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  135 (198)
                      ....++.|+||||++.|.......+..+|++++|+|++....- +....+..+...  ...+++|++||+|+........
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~  177 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF  177 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence            4556788999999988765555567899999999998754321 112222222222  2357889999999864221111


Q ss_pred             ----HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 048059          136 ----EEGEQFSQENG---MFYIETSAKTAQNINE  162 (198)
Q Consensus       136 ----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  162 (198)
                          .+...+....+   ++++++||++|.|+.+
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                22233334444   4699999999999874

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.67  E-value=3e-15  Score=119.76  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=99.7

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCC------------------------C---CCCCcceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKG--QFYD------------------------Q---QEPTIGAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~------------------------~---~~~~~~~~~~~~~~~~~~~   57 (198)
                      ..+.++|+++|+.++|||||+.+|+..  ....                        .   .....|.+.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            456799999999999999999998751  1110                        0   0011133444445556667


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh---H---HHHHHHHHHHHHhCCCCceEEEEEeCCCCCC--
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT---F---NRANKLVQELQRQGNQIVVMALAANKSDLDS--  129 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~--  129 (198)
                      ...+.|+|+||+.+|.......+..+|++++|+|++...-   +   .+....+..+...  ...++++++||.|...  
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccch
Confidence            7889999999999998877788899999999999876420   0   1223333333322  2235788999999532  


Q ss_pred             CCC----CCHHHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 048059          130 QRE----VPTEEGEQFSQEN-----GMFYIETSAKTAQNINE  162 (198)
Q Consensus       130 ~~~----~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  162 (198)
                      ..+    ...+++..+....     +++++++|+.+|+|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            111    1123333433333     36799999999999864

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=4.6e-16  Score=104.74  Aligned_cols=155  Identities=20%  Similarity=0.234  Sum_probs=112.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      +.-|++++|.-|+|||||++.|...+. ..+.||...+  +-.+.+  ...+++-.|.+|+-..+..|..|+..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT--SE~l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT--SEELSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC--hHHhee--cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            356899999999999999998886553 3444554433  222222  45678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH------Hc--------C---CeEE
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ------EN--------G---MFYI  150 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~--------~---~~~~  150 (198)
                      .+|+-|.+.+.+...-++.+... .-...|++|++||+|.+...  ..++.+...-      ..        +   +.+|
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            99999999988777666665543 33678999999999986543  2222221111      00        1   2367


Q ss_pred             EEccCCCCCHHHHHHHHHHH
Q 048059          151 ETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      .||...+.+..+.|.|+...
T Consensus       172 mcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEccCccceeeeehhhh
Confidence            88888888888888887543

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.66  E-value=2.5e-15  Score=114.89  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=54.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCC------CCCCcceeEEEEE---------------EEeCC-cEEEEEEEeCCCc-
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQFYDQ------QEPTIGAAFFTQI---------------LSLSE-ATVKFDIWDTAGQ-   69 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~~~~~------~~~~~~~~~~~~~---------------~~~~~-~~~~~~l~D~~g~-   69 (198)
                      |+++|.|+||||||+++|++......      ..|+.|..+....               ...++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998764322      2233333322110               00112 3467999999997 


Q ss_pred             ---hhhcccchhh---hcCCCeEEEEEECC
Q 048059           70 ---ERYHSLAPMY---YRGAAAAVVVYDIS   93 (198)
Q Consensus        70 ---~~~~~~~~~~---~~~~d~~i~v~d~~   93 (198)
                         +.+..+...+   ++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               4444444444   78999999999996

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK13351 elongation factor G; Reviewed

Probab=99.66  E-value=1.6e-15  Score=127.82  Aligned_cols=117  Identities=19%  Similarity=0.145  Sum_probs=82.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-------------CCCCC---CcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-------------DQQEP---TIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      +...||+|+|+.++|||||+++|+...-.             ..+.+   ..+.+.......+......+.+|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            34689999999999999999999852110             00000   112222222333444567899999999999


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      +...+..+++.+|++++|+|.++.........| ..+..   .+.|+++++||+|+.
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~  138 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV  138 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence            988899999999999999999887665544434 33322   357899999999975

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.66  E-value=1.9e-15  Score=99.73  Aligned_cols=106  Identities=19%  Similarity=0.176  Sum_probs=65.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh---------cccchhhhc
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY---------HSLAPMYYR   81 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~   81 (198)
                      +|+|+|.+|+|||||+++|++.... ....+..........+.+.+.  .+.++||||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999985422 111121111212233334443  4569999996321         111223348


Q ss_pred             CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059           82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK  124 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  124 (198)
                      .+|++++|+|.+++.. +....++..+.    ...|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999877322 33334444442    55799999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=9.2e-16  Score=119.63  Aligned_cols=169  Identities=18%  Similarity=0.163  Sum_probs=113.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-hcc--------cchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-YHS--------LAPM   78 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~--------~~~~   78 (198)
                      +..++|+|+|+||+|||||+|.|..... .--.|..|++.......+....+++.|.||+|-.+ -..        ....
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr-sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDR-SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCc-eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            3468999999999999999999997653 33446667777777777778889999999999754 111        1234


Q ss_pred             hhcCCCeEEEEEEC--CChhhHHHHHHHHHHHHHhC------CCCceEEEEEeCCCCCCC-CCCCHHHHHHHHHH--c-C
Q 048059           79 YYRGAAAAVVVYDI--SNMDTFNRANKLVQELQRQG------NQIVVMALAANKSDLDSQ-REVPTEEGEQFSQE--N-G  146 (198)
Q Consensus        79 ~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~~~~~~------~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~--~-~  146 (198)
                      .+..+|++++|+|+  ++-++...+.+.++......      ....+++++.||.|+... ++.. .....+...  . .
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~-~~~~~~~~~~~~~~  423 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT-KIPVVYPSAEGRSV  423 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc-CCceeccccccCcc
Confidence            46789999999998  33333333333333333211      134789999999998654 1111 111111111  1 1


Q ss_pred             C-eEEEEccCCCCCHHHHHHHHHHHHHhhCCCC
Q 048059          147 M-FYIETSAKTAQNINELFYEIAKRLARVSPPK  178 (198)
Q Consensus       147 ~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  178 (198)
                      . .+.++|+++++|+.++.+.|...+.....+.
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~  456 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNIVERLVVSP  456 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHHHHHhhcCC
Confidence            2 3556999999999999999999877766643

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=3.3e-15  Score=117.80  Aligned_cols=167  Identities=19%  Similarity=0.150  Sum_probs=118.6

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC-----------CCCCcceeEEEEEEE---eCCcEEEEEEEeCCCchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQF--YDQ-----------QEPTIGAAFFTQILS---LSEATVKFDIWDTAGQER   71 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~--~~~-----------~~~~~~~~~~~~~~~---~~~~~~~~~l~D~~g~~~   71 (198)
                      ..-.|+.|+.+..-|||||..+|+...-  +..           ....-|.+.......   .++..+.+.++|||||.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            4457899999999999999999885221  100           001123444433322   235668999999999999


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCCeEE
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQENGMFYI  150 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~  150 (198)
                      |.......+.-++++|+|+|++..-.-+.+..++..+.    .+..+|.|+||+|++..+. ....+..++......+.+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            99999999999999999999987655555555555443    4457888999999976542 223344444444556899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHhhCCCC
Q 048059          151 ETSAKTAQNINELFYEIAKRLARVSPPK  178 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  178 (198)
                      .+||++|.|+.++++.+++.+...+...
T Consensus       214 ~vSAK~G~~v~~lL~AII~rVPpP~~~~  241 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRVPPPKGIR  241 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence            9999999999999999988776555443

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.65  E-value=2.6e-16  Score=110.20  Aligned_cols=117  Identities=21%  Similarity=0.293  Sum_probs=72.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcccchh---hhcCCCe
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHSLAPM---YYRGAAA   85 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~---~~~~~d~   85 (198)
                      .-.|+++|+.|||||+|..+|..+.......+. ....   ...+ ......+.++|+||+++.+.....   +..++.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            356899999999999999999998654443333 2111   1112 123345789999999988764433   4788999


Q ss_pred             EEEEEECCC-hhhHHHH-HHHHHHHHHh--CCCCceEEEEEeCCCCCCC
Q 048059           86 AVVVYDISN-MDTFNRA-NKLVQELQRQ--GNQIVVMALAANKSDLDSQ  130 (198)
Q Consensus        86 ~i~v~d~~~-~~s~~~~-~~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~  130 (198)
                      +|||+|.+. +..+.++ +.++..+...  .....|++|+.||.|+...
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            999999974 3344433 5555555442  3467899999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=2e-14  Score=113.69  Aligned_cols=153  Identities=22%  Similarity=0.222  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .=|.++|+..-|||||+..+-.......-.-.+.-...-..+..+. ..-.+.|+|||||+.|..+...-..-+|.+|+|
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            4588999999999999999987654432222222222222233321 234688999999999999999888899999999


Q ss_pred             EECCCh---hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEccCCC
Q 048059           90 YDISNM---DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG---------MFYIETSAKTA  157 (198)
Q Consensus        90 ~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~  157 (198)
                      ++++|.   ++.+.+.       .....+.|++|..||+|..+..   ......-..+++         ..++++||++|
T Consensus        86 Va~dDGv~pQTiEAI~-------hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg  155 (509)
T COG0532          86 VAADDGVMPQTIEAIN-------HAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG  155 (509)
T ss_pred             EEccCCcchhHHHHHH-------HHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence            999874   3333322       2223678999999999987432   222222222222         46999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 048059          158 QNINELFYEIAKRLAR  173 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~  173 (198)
                      +|+++++..++-....
T Consensus       156 ~Gi~eLL~~ill~aev  171 (509)
T COG0532         156 EGIDELLELILLLAEV  171 (509)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999998764443

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=3.3e-15  Score=109.06  Aligned_cols=164  Identities=16%  Similarity=0.190  Sum_probs=104.9

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-------hcccchhh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-------YHSLAPMY   79 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~   79 (198)
                      ....++|+++|.+|+|||||+|+|+.+.......-..+.+....... ..+.-.+.|||+||...       ++.....+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~-~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL-SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-hccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence            45679999999999999999999997554332211222222122111 11224578999999643       66677788


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC-------CCCCHHHHHHHHHH--------
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ-------REVPTEEGEQFSQE--------  144 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------~~~~~~~~~~~~~~--------  144 (198)
                      +...|.++++.++.|+.---+...|.+.+...  .+.++++++|.+|....       ........+.+..+        
T Consensus       115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            89999999999998875433334444433332  23689999999997422       01111111111111        


Q ss_pred             c--CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          145 N--GMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       145 ~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      .  --|++.++...+-|++++...++..+..
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            1  2367888889999999999999887653

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.61  E-value=1.7e-14  Score=108.28  Aligned_cols=164  Identities=19%  Similarity=0.143  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc----cc---chhhhcCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH----SL---APMYYRGA   83 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~---~~~~~~~~   83 (198)
                      .-|.++|.|++|||||++.++..+..-...|.....-..-.+.. ...-.+.+=|.||.-+-.    .+   .-..++.+
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            34679999999999999999986644333332221111111222 333457799999852111    11   12335678


Q ss_pred             CeEEEEEECCChh---hHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE-EccCCC
Q 048059           84 AAAVVVYDISNMD---TFNRANKLVQELQRQG--NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIE-TSAKTA  157 (198)
Q Consensus        84 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~  157 (198)
                      .++++|+|++..+   ..++.......+..+.  -...|.+||+||+|+....+...+..+.+.+..++..+. +||.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            9999999997544   3555555555555542  256799999999997554444344455555555554332 999999


Q ss_pred             CCHHHHHHHHHHHHHhhC
Q 048059          158 QNINELFYEIAKRLARVS  175 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~  175 (198)
                      .|+++++..+.+.+.+..
T Consensus       319 ~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         319 EGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHHhh
Confidence            999999999988777764

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=1.8e-14  Score=121.34  Aligned_cols=143  Identities=16%  Similarity=0.069  Sum_probs=92.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCC----CCC------------CCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYD----QQE------------PTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      .-.+|+|+|++++|||||+++|+...-..    ...            ...|.+.......+.....++.+|||||+..+
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            35799999999999999999997421110    000            01233333444444455678999999999888


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC----e
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM----F  148 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~  148 (198)
                      ...+...++.+|++++|+|+++....+.. .++..+..   .+.|+++++||+|+....  ..+....+...++.    .
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~~~  162 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANAVPI  162 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCceeE
Confidence            87888899999999999999875444332 23333332   347899999999986433  12333444444333    1


Q ss_pred             EEEEccCCC
Q 048059          149 YIETSAKTA  157 (198)
Q Consensus       149 ~~~~Sa~~~  157 (198)
                      .+++|+..+
T Consensus       163 ~ipis~~~~  171 (689)
T TIGR00484       163 QLPIGAEDN  171 (689)
T ss_pred             EeccccCCC
Confidence            455555544

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.61  E-value=2.2e-14  Score=106.86  Aligned_cols=161  Identities=20%  Similarity=0.262  Sum_probs=116.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEE--EeCCcEEEEEEEeCCCchhhcccchhhhcC----C
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL--SLSEATVKFDIWDTAGQERYHSLAPMYYRG----A   83 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~   83 (198)
                      .-+|+|+|..++|||||+.+|-+..   ..-+.-|..+....+  ..+++..++.+|-..|+..+..+....+..    -
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            4689999999999999999998755   223333444333332  223445678899888887666666555532    2


Q ss_pred             CeEEEEEECCChhh-HHHHHHHHHHHHHhC--------------------------------------------------
Q 048059           84 AAAVVVYDISNMDT-FNRANKLVQELQRQG--------------------------------------------------  112 (198)
Q Consensus        84 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~--------------------------------------------------  112 (198)
                      -.||++.|+++|.. ++.+..|...+.++.                                                  
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            46789999999954 578888877766432                                                  


Q ss_pred             -----------CCCceEEEEEeCCCC----CCCC-------CCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059          113 -----------NQIVVMALAANKSDL----DSQR-------EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       113 -----------~~~~p~iiv~nK~Dl----~~~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                                 +-.+|++||.||+|.    +.+.       ......+++||..+|+.++.+|++...|++-++.+|+++
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                       114899999999997    2222       223455688888999999999999999999999999998


Q ss_pred             HHh
Q 048059          171 LAR  173 (198)
Q Consensus       171 ~~~  173 (198)
                      .+-
T Consensus       289 ~yG  291 (473)
T KOG3905|consen  289 SYG  291 (473)
T ss_pred             hcC
Confidence            764

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=2.6e-14  Score=111.21  Aligned_cols=164  Identities=18%  Similarity=0.178  Sum_probs=116.6

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-------CCC------CCCcceeEEEE--EEEe---CCcEEEEEEEeCCCc
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-------DQQ------EPTIGAAFFTQ--ILSL---SEATVKFDIWDTAGQ   69 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-------~~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~D~~g~   69 (198)
                      ..-.|..|+.+-.-|||||..+|+...-.       .+.      ...-|.+....  .+.+   ++..+.+.++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            34467889999999999999998852110       000      01112332222  2222   457799999999999


Q ss_pred             hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 048059           70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM--  147 (198)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--  147 (198)
                      -.|.-.....+.-+.+.++|+|++..-.-+.+.+.+..+.    .+..++-|+||+|++....  ..-.++...-.|+  
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~  160 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA  160 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence            9998888888899999999999987766666666666653    4567889999999976443  2223334444555  


Q ss_pred             -eEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          148 -FYIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       148 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                       ..+.+|||+|.|++++++.|++++.....+
T Consensus       161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~  191 (603)
T COG0481         161 SDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD  191 (603)
T ss_pred             chheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence             478999999999999999999887765544

>PRK12739 elongation factor G; Reviewed

Probab=99.61  E-value=5e-14  Score=118.62  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=79.9

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC--C--CCC------------CCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY--D--QQE------------PTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~--~--~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      ..-.+|+|+|++++|||||+++|+...-.  .  ...            ...|.+.......+.....++.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            34679999999999999999999752100  0  000            1112333333334444567889999999988


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      +...+...++.+|++|+|+|+.+...-+. +..+..+..   .+.|+++++||+|+.
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~  138 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRI  138 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence            88888888999999999999986543222 233333332   346889999999985

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.60  E-value=7.6e-14  Score=104.06  Aligned_cols=154  Identities=19%  Similarity=0.160  Sum_probs=103.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-------cccchhhhcC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-------HSLAPMYYRG   82 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~   82 (198)
                      ..+++++|.|++|||||+++|++........+.......+-.+.+  +..++++.|+||.-.-       ....-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y--~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY--KGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee--cCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            478999999999999999999987655444443333322333444  4566889999975211       1234456789


Q ss_pred             CCeEEEEEECCChhh-HHHHHHHHHHHH-----------------------------------------HhC--------
Q 048059           83 AAAAVVVYDISNMDT-FNRANKLVQELQ-----------------------------------------RQG--------  112 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~-----------------------------------------~~~--------  112 (198)
                      ||++++|+|+....+ .+.+...++...                                         ++.        
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999975544 444333222211                                         000        


Q ss_pred             ----------------CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          113 ----------------NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       113 ----------------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                                      ..-.|.+++.||.|+..     .++...+.+..  ..+.+||+.+.|++++.+.|-+.+-
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                            01378899999999765     34445555444  6899999999999999999888653

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=2.2e-14  Score=100.84  Aligned_cols=155  Identities=24%  Similarity=0.274  Sum_probs=99.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhc---CCCeE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYR---GAAAA   86 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~   86 (198)
                      +-.|+++|+.+||||+|.-+|..+.+.....+. ..+  ...+.++..  .++++|.||+++.+.....++.   .+-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi-epn--~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI-EPN--EATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeee-ccc--eeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            357999999999999999999887544333221 111  111222222  2789999999988876666665   79999


Q ss_pred             EEEEECC-ChhhHHHH-HHHHHHHHHh--CCCCceEEEEEeCCCCCCCCC--C----CHHHHHH----------------
Q 048059           87 VVVYDIS-NMDTFNRA-NKLVQELQRQ--GNQIVVMALAANKSDLDSQRE--V----PTEEGEQ----------------  140 (198)
Q Consensus        87 i~v~d~~-~~~s~~~~-~~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~--~----~~~~~~~----------------  140 (198)
                      +||+|.. ......++ +.++..+...  .....|++|..||.|+...+.  .    .+.++..                
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            9999974 22333333 5555555543  357789999999999842210  0    0001100                


Q ss_pred             --------------HHH--HcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059          141 --------------FSQ--ENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       141 --------------~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                                    |.+  ...+.|.++|++++ +++++-+||.+.
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                          000  12345888999998 799999998765

>TIGR00503 prfC peptide chain release factor 3

Probab=99.59  E-value=2.8e-14  Score=116.14  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh--CCCCC------C------------CCCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK--GQFYD------Q------------QEPTIGAAFFTQILSLSEATVKFDIWDTA   67 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   67 (198)
                      ....+|+|+|++++|||||+++|+.  +....      .            .....+.++......+....+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4567999999999999999999863  11100      0            00112344445556667778899999999


Q ss_pred             CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      |+..+.......+..+|++|+|+|+++.- ......+++....   .+.|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            99888776777889999999999997642 1223444443332   4579999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=2.9e-14  Score=109.51  Aligned_cols=155  Identities=22%  Similarity=0.233  Sum_probs=101.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCC--CCC---------------C------------CCCCcceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ--FYD---------------Q------------QEPTIGAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~--~~~---------------~------------~~~~~~~~~~~~~~~~~~~   57 (198)
                      ..+.++++++|+..+|||||+-+|+...  .+.               +            ....-|.+.......+.-+
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            4567999999999999999999988531  100               0            0011245555666667777


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh---H---HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT---F---NRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      .+.++|+|+||+..|-...-.-..+||+.|||+|+.+.+.   |   .+.... ..+.+. ..-..++|++||.|..+-+
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~t-lGi~~lIVavNKMD~v~wd  161 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLART-LGIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHh-cCCceEEEEEEcccccccC
Confidence            7789999999988877666667789999999999987641   1   111111 112222 2344688999999987533


Q ss_pred             CCCHHHH----HHHHHHc-----CCeEEEEccCCCCCHHHH
Q 048059          132 EVPTEEG----EQFSQEN-----GMFYIETSAKTAQNINEL  163 (198)
Q Consensus       132 ~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~i~~~  163 (198)
                      +...+++    ..+.+..     +++|+++|+..|+|+.+.
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            2222222    2233333     356999999999987653

>PRK09866 hypothetical protein; Provisional

Probab=99.58  E-value=1.7e-13  Score=111.22  Aligned_cols=108  Identities=15%  Similarity=0.161  Sum_probs=72.3

Q ss_pred             EEEEEeCCCchhh-----cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC
Q 048059           60 KFDIWDTAGQERY-----HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP  134 (198)
Q Consensus        60 ~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  134 (198)
                      ++.|+||||....     .......+..+|+++||+|.+...+..+ ....+.+... +...|+++|+||+|+.......
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence            5779999997532     2223346889999999999976433332 2233444332 2335999999999985433333


Q ss_pred             HHHHHHHHHHc-------CCeEEEEccCCCCCHHHHHHHHHH
Q 048059          135 TEEGEQFSQEN-------GMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus       135 ~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      .+....+....       ...++++||++|.|++.+++.|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            45555554321       236999999999999999999877

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.56  E-value=1.9e-13  Score=107.64  Aligned_cols=83  Identities=20%  Similarity=0.270  Sum_probs=54.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CCcceeEEEEEE---------------EeC-CcEEEEEEEeCCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQE------PTIGAAFFTQIL---------------SLS-EATVKFDIWDTAG   68 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~------~~~~~~~~~~~~---------------~~~-~~~~~~~l~D~~g   68 (198)
                      ++|+++|.|+||||||+++|++........      |+.|........               ..+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            589999999999999999999876543222      222221110000               011 2336789999999


Q ss_pred             c----hhhcccchhh---hcCCCeEEEEEECC
Q 048059           69 Q----ERYHSLAPMY---YRGAAAAVVVYDIS   93 (198)
Q Consensus        69 ~----~~~~~~~~~~---~~~~d~~i~v~d~~   93 (198)
                      .    .....+...+   ++++|++++|+|..
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            5    3333444455   78999999999996

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=2.9e-13  Score=107.04  Aligned_cols=158  Identities=18%  Similarity=0.181  Sum_probs=106.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ...=|.|+|+..-|||||+..|-.......--.  |....-+..  .+. ....++|.||||+..|..+...-..-+|++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V--~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTV--TLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEE--ecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence            345688999999999999999987554322211  222222233  333 336788999999999999999888899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc---------CCeEEEEccCCC
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN---------GMFYIETSAKTA  157 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~  157 (198)
                      ++|+.++|.- ..+.   .+.+......+.|++|.+||+|.++..   .+...+-....         ++.++++||++|
T Consensus       229 VLVVAadDGV-mpQT---~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g  301 (683)
T KOG1145|consen  229 VLVVAADDGV-MPQT---LEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTG  301 (683)
T ss_pred             EEEEEccCCc-cHhH---HHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence            9999987642 1111   122222234678999999999976433   23332222222         356899999999


Q ss_pred             CCHHHHHHHHHH--HHHhhCC
Q 048059          158 QNINELFYEIAK--RLARVSP  176 (198)
Q Consensus       158 ~~i~~~~~~l~~--~~~~~~~  176 (198)
                      .|++.+.+.++-  .+++...
T Consensus       302 ~nl~~L~eaill~Ae~mdLkA  322 (683)
T KOG1145|consen  302 ENLDLLEEAILLLAEVMDLKA  322 (683)
T ss_pred             CChHHHHHHHHHHHHHhhccc
Confidence            999999988765  3444433

>cd00066 G-alpha G protein alpha subunit

Probab=99.55  E-value=2.6e-13  Score=104.38  Aligned_cols=119  Identities=18%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCCh----------hhHHHHHHHHHHHHHh-CCCCceEEEEEeCC
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM----------DTFNRANKLVQELQRQ-GNQIVVMALAANKS  125 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~  125 (198)
                      ..+.+.+||++|+...+..|.+++.+++++|||+|+++.          ..+.+....+..+... .-.+.|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            456788999999999999999999999999999999874          2333333333433332 33678999999999


Q ss_pred             CCCC----------------CCCCCHHHHHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          126 DLDS----------------QREVPTEEGEQFSQE----------NGMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       126 Dl~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      |+-.                ....+.+.+..+...          ..+..+.++|.+..++..+|+.+.+.+....
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            9621                112244555555443          2345677899999999999999988887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.53  E-value=2e-13  Score=98.26  Aligned_cols=101  Identities=19%  Similarity=0.160  Sum_probs=65.5

Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE--EEEEeCCCCCCCCCCCHH
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM--ALAANKSDLDSQREVPTE  136 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--iiv~nK~Dl~~~~~~~~~  136 (198)
                      ....++++.|..-.....+.   -++.+|.|+|+.+.++...  .+.        .+...  ++++||+|+........+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~--------~qi~~ad~~~~~k~d~~~~~~~~~~  158 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGG--------PGITRSDLLVINKIDLAPMVGADLG  158 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhH--------hHhhhccEEEEEhhhccccccccHH
Confidence            45567888884322222222   2688999999987655321  111        12233  688899998743233344


Q ss_pred             HHHHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          137 EGEQFSQE--NGMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       137 ~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      ...+..+.  .+.+++++||++|+|++++|++|.+.+.
T Consensus       159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            44445544  4578999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK00007 elongation factor G; Reviewed

Probab=99.52  E-value=3e-13  Score=113.95  Aligned_cols=144  Identities=16%  Similarity=0.105  Sum_probs=90.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC--CC------------CCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK--GQFYDQ--QE------------PTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      +.-.||+|+|++++|||||+++|+.  +.....  ..            ...+.+.......+......+.++||||+..
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            3457999999999999999999974  111000  00            1123333333344444567899999999987


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC----
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM----  147 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----  147 (198)
                      +.......+..+|++++|+|+...-..+... .+..+..   .+.|+++++||+|+....  ..+....+...++.    
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~~  161 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPVP  161 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCeee
Confidence            7666677788999999999987654333322 2333333   346788999999986433  22333444444433    


Q ss_pred             eEEEEccCCC
Q 048059          148 FYIETSAKTA  157 (198)
Q Consensus       148 ~~~~~Sa~~~  157 (198)
                      ..+++|+..+
T Consensus       162 ~~ipisa~~~  171 (693)
T PRK00007        162 IQLPIGAEDD  171 (693)
T ss_pred             EEecCccCCc
Confidence            2455566554

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.52  E-value=2.8e-13  Score=90.17  Aligned_cols=114  Identities=28%  Similarity=0.391  Sum_probs=82.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQE-PTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999997766543332 3222                           333345567788999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      |+.++..+++.+  |...+......+.|.++++||.|+.....+..+....        ++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~--------~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLE--------FAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHH--------HHHHhCCCcchhh
Confidence            999999998766  7766665545668899999999985444444433333        4567889999874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK12740 elongation factor G; Reviewed

Probab=99.52  E-value=3e-13  Score=113.91  Aligned_cols=109  Identities=18%  Similarity=0.098  Sum_probs=73.9

Q ss_pred             EcCCCCCHHHHHHHHHhCCCC--C------C--CC------CCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh
Q 048059           16 LGDMGTGKTSLALRFIKGQFY--D------Q--QE------PTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY   79 (198)
Q Consensus        16 ~G~~~sGKssli~~l~~~~~~--~------~--~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   79 (198)
                      +|++++|||||+++|+...-.  .      .  ..      ...+.+.......+....+.+.+|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999642110  0      0  00      001222233333444456789999999998887788888


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      +..+|++++|+|.+..........| ..+..   .+.|+++++||+|+.
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            9999999999999876554443333 23322   357899999999974

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.51  E-value=4.7e-13  Score=100.96  Aligned_cols=123  Identities=11%  Similarity=0.134  Sum_probs=69.8

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-------chh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-------APM   78 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~   78 (198)
                      .....++|+++|.+|+||||++|+|++....... ...+.+..............+.+|||||.......       ...
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs-~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVS-AFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            3456799999999999999999999987642211 11111111111222224567899999997533211       111


Q ss_pred             hh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCC
Q 048059           79 YY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDS  129 (198)
Q Consensus        79 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~  129 (198)
                      ++  ...|+++||..++.....+.-...++.+....+  --.+.+|+.|+.|...
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            11  268999999665432111111223333333211  1246899999999653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.51  E-value=1.1e-13  Score=102.63  Aligned_cols=95  Identities=19%  Similarity=0.239  Sum_probs=78.1

Q ss_pred             hhhcccchhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 048059           70 ERYHSLAPMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF  148 (198)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (198)
                      +++..+.+.+++++|++++|||++++. +++.+..|+..+..   .+.|+++|+||+|+...+.+..+....+. ..+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence            677888888999999999999999888 89999999876643   46799999999999655544334444444 57889


Q ss_pred             EEEEccCCCCCHHHHHHHHH
Q 048059          149 YIETSAKTAQNINELFYEIA  168 (198)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ++++||++|.|++++|+.+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~  119 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQ  119 (245)
T ss_pred             EEEEecCCchhHHHHHhhhc
Confidence            99999999999999998875

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>smart00275 G_alpha G protein alpha subunit

Probab=99.51  E-value=1.4e-12  Score=101.10  Aligned_cols=119  Identities=17%  Similarity=0.215  Sum_probs=84.7

Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh----------hHHHHHHHHHHHHH-hCCCCceEEEEEeCC
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD----------TFNRANKLVQELQR-QGNQIVVMALAANKS  125 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~  125 (198)
                      ..+.+.+||.+|+...+..|.+++.+++++|||+|+++..          .+++....+..+.. ..-.+.|++|++||.
T Consensus       182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~  261 (342)
T smart00275      182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI  261 (342)
T ss_pred             CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence            3456789999999999999999999999999999998742          34333334444433 233678999999999


Q ss_pred             CCCC--------------CC-CCCHHHHHHHHHH-----------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          126 DLDS--------------QR-EVPTEEGEQFSQE-----------NGMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       126 Dl~~--------------~~-~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      |+..              .. ..+.+.+..+...           ..+..+.++|.+..++..+|+.+...+...+
T Consensus       262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            9721              01 1234445444432           1244677889999999999999888877654

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.49  E-value=1.5e-12  Score=103.73  Aligned_cols=165  Identities=19%  Similarity=0.223  Sum_probs=122.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ....-++++++|+.++|||.|++.+++..+...+..+....+....+...+....+.+-|.+-. ....+.+.- ..+|+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3455699999999999999999999998887766666666666666666666666777777754 222222222 67999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~  164 (198)
                      +.++||.+++.+|+.....++.....  ...|+++|++|+|+.+..+...-.-.+++.++++ +.+.+|.++... .++|
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf  575 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF  575 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence            99999999999998887766655443  6789999999999976654333333889999998 456777775333 8899


Q ss_pred             HHHHHHHHhhC
Q 048059          165 YEIAKRLARVS  175 (198)
Q Consensus       165 ~~l~~~~~~~~  175 (198)
                      ..|..++.-.+
T Consensus       576 ~kL~~~A~~Ph  586 (625)
T KOG1707|consen  576 IKLATMAQYPH  586 (625)
T ss_pred             HHHHHhhhCCC
Confidence            88887665544

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.49  E-value=1.3e-12  Score=104.33  Aligned_cols=165  Identities=20%  Similarity=0.266  Sum_probs=115.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC--CcEEEEEEEeCCCchhhcccchhhhcC----
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS--EATVKFDIWDTAGQERYHSLAPMYYRG----   82 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~----   82 (198)
                      ..-.|+|+|..++|||||+.+|.+..   ...++.+..|....+.-+  +....+.+|-..|...+..+....+..    
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34689999999999999999987543   344555665554443222  223468899998876666666555432    


Q ss_pred             CCeEEEEEECCChhhH-HHHHHHHHHHHHhC-------------------------------------------------
Q 048059           83 AAAAVVVYDISNMDTF-NRANKLVQELQRQG-------------------------------------------------  112 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-------------------------------------------------  112 (198)
                      --.+|+|.|.+.|..+ +++..|+..+..+.                                                 
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence            3567889999998765 56666655443211                                                 


Q ss_pred             -------------CCCceEEEEEeCCCCCC----CC-------CCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059          113 -------------NQIVVMALAANKSDLDS----QR-------EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus       113 -------------~~~~p~iiv~nK~Dl~~----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                                   +-.+|++||++|+|...    ..       ......++.+|..+|+.++.+|++...+++.++.+|.
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence                         01379999999999621    11       1233456788888999999999999999999999999


Q ss_pred             HHHHhhCC
Q 048059          169 KRLARVSP  176 (198)
Q Consensus       169 ~~~~~~~~  176 (198)
                      +.++...-
T Consensus       261 h~l~~~~f  268 (472)
T PF05783_consen  261 HRLYGFPF  268 (472)
T ss_pred             HHhccCCC
Confidence            98876543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=2e-13  Score=115.43  Aligned_cols=117  Identities=20%  Similarity=0.183  Sum_probs=80.6

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCC---------------CCC---CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQ---------------FYD---QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~---------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ....||+++|+.++|||||+++|+...               +..   ++..|+........+.+.+..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            345899999999999999999997521               100   01123333332333446677889999999999


Q ss_pred             hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      ..+.......+..+|++|+|+|+.+....+....|. .+.   ..+.|+++++||.|..
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~  151 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRL  151 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhcc
Confidence            988877888899999999999987643322222222 221   2345778999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.48  E-value=9.6e-13  Score=97.64  Aligned_cols=121  Identities=12%  Similarity=0.076  Sum_probs=70.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc--c-c-------c
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH--S-L-------A   76 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~-~-------~   76 (198)
                      ....++|+|+|.+|+|||||+|+|++....... ...+.+..............+.+|||||.....  . .       .
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            455799999999999999999999987643221 111112112222222344678999999975331  0 0       1


Q ss_pred             hhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCC
Q 048059           77 PMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ--IVVMALAANKSDLD  128 (198)
Q Consensus        77 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~  128 (198)
                      ..++.  ..++++||..++....-..-...++.+....+.  -.++++|.||+|..
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence            22332  578888887665422111112333344432221  14689999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.48  E-value=7e-13  Score=96.54  Aligned_cols=162  Identities=15%  Similarity=0.173  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcc--eeEEEEEEEeCCcEEEEEEEeCCCchhhcc-------cch----
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIG--AAFFTQILSLSEATVKFDIWDTAGQERYHS-------LAP----   77 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~----   77 (198)
                      ++|+|+|.+||||||++|.+++...........+  ...........+  ..+.++||||......       ...    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            5899999999999999999998765433321111  122222223333  5678999999522111       111    


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCC-------HHHHHHHHHHcCCe
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVP-------TEEGEQFSQENGMF  148 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~  148 (198)
                      ....+.+++|||+..... +-++ ...++.+....+  --..++||.|..|......+.       ....+.+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            123568999999998732 2111 222222332212  123588888999865444311       12234555566777


Q ss_pred             EEEEccC------CCCCHHHHHHHHHHHHHhhCC
Q 048059          149 YIETSAK------TAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       149 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      |+.++.+      ....+.++++.+-..+.+...
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g  190 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG  190 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            8888777      235678888887766665543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.47  E-value=2.7e-13  Score=87.40  Aligned_cols=136  Identities=20%  Similarity=0.222  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch----hhcccchhhhcCCCeEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE----RYHSLAPMYYRGAAAAV   87 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~~~d~~i   87 (198)
                      ||.++|..|+|||||.+.|-+...  .+..|....+       ...    -.+||||.-    .+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            689999999999999999987442  2223322221       111    157999852    22222233457899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFYE  166 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~  166 (198)
                      +|-+++++++.-..     .+...  ...|+|-|++|.|+.+..  +.+..+.|..+-|. ++|++|+.++.|+++++..
T Consensus        70 ~v~~and~~s~f~p-----~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFPP-----GFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCCc-----ccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999988753211     11111  234588888999997633  34677888888887 6999999999999999998


Q ss_pred             HHH
Q 048059          167 IAK  169 (198)
Q Consensus       167 l~~  169 (198)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            764

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.47  E-value=2.4e-12  Score=110.99  Aligned_cols=104  Identities=28%  Similarity=0.261  Sum_probs=72.4

Q ss_pred             EEEEeCCCchhhcccchhhhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC---
Q 048059           61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP---  134 (198)
Q Consensus        61 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---  134 (198)
                      +.||||||++.+..+....+..+|++++|+|+++   +++++.+.    .+..   .+.|+++++||+|+.......   
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~  600 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDE  600 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccch
Confidence            7899999999998887778888999999999986   44444333    2222   246999999999985322210   


Q ss_pred             ----------HHHHHH-----------HHH--------------HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          135 ----------TEEGEQ-----------FSQ--------------ENGMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       135 ----------~~~~~~-----------~~~--------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                                .....+           ++.              ...++++++||++|+|+++++.+|....
T Consensus       601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence                      000011           111              1145799999999999999998876543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=3.2e-13  Score=100.63  Aligned_cols=175  Identities=19%  Similarity=0.152  Sum_probs=113.7

Q ss_pred             CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCC--CcceeEE----------------EEEEEeC----
Q 048059            1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYD---QQEP--TIGAAFF----------------TQILSLS----   55 (198)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~---~~~~--~~~~~~~----------------~~~~~~~----   55 (198)
                      |+.....+..+||.++|...-|||||..+|++--.+.   +...  ++-..|.                ...-...    
T Consensus         1 m~~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~   80 (415)
T COG5257           1 MADPKHIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA   80 (415)
T ss_pred             CCccccCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC
Confidence            5555555788999999999999999999998632111   1000  0000000                0000000    


Q ss_pred             --CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--
Q 048059           56 --EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR--  131 (198)
Q Consensus        56 --~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--  131 (198)
                        .-...+.|+|.||++-.....-.-..-.|+.++|++++.+-.-.+..+.+-.+.-.  .-..++|+-||.|+....  
T Consensus        81 ~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~A  158 (415)
T COG5257          81 ETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERA  158 (415)
T ss_pred             CccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHH
Confidence              11246889999999865543333344579999999988654333333333333332  334799999999996422  


Q ss_pred             CCCHHHHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          132 EVPTEEGEQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       132 ~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      ...++++++|.+.-   +++++++||..+.|++-+++.|.+.+.....+
T Consensus       159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd  207 (415)
T COG5257         159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD  207 (415)
T ss_pred             HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence            23467777777753   67999999999999999999999988766554

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.44  E-value=2.4e-12  Score=100.25  Aligned_cols=163  Identities=14%  Similarity=0.159  Sum_probs=116.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC--------------CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFY--------------DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL   75 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   75 (198)
                      -.||+|+.+..-|||||+..|+.+.-.              ......-|.++..+...+..+.+.+.++||||+..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            368999999999999999999864211              111223356666676677778899999999999999999


Q ss_pred             chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCC
Q 048059           76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQ-------ENGM  147 (198)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~  147 (198)
                      .+..+.-.|++++++|+... .+.+....+.....   .+.+.|||+||+|.+..+. ...++...+..       ++++
T Consensus        85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            99999999999999998753 34444443333222   3456677889999876552 12233333333       3467


Q ss_pred             eEEEEccCCC----------CCHHHHHHHHHHHHHhhCC
Q 048059          148 FYIETSAKTA----------QNINELFYEIAKRLARVSP  176 (198)
Q Consensus       148 ~~~~~Sa~~~----------~~i~~~~~~l~~~~~~~~~  176 (198)
                      |++..|++.|          .++.-+|+.|++++.....
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~  199 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG  199 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence            8999999877          4688889988888766554

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=4.1e-12  Score=95.69  Aligned_cols=166  Identities=17%  Similarity=0.176  Sum_probs=98.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCC----CCCCCCC-----CcceeEEEEEEE-----eCCcEEEEEEEeCCCchhhc
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQ----FYDQQEP-----TIGAAFFTQILS-----LSEATVKFDIWDTAGQERYH   73 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~----~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~l~D~~g~~~~~   73 (198)
                      ..++|+.++|...||||||.++|..-.    ++....+     |....+......     -.+..+++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            345999999999999999999987532    2222111     111112111111     12345788999999986543


Q ss_pred             ccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCC-HHHHHHHHHHc-----
Q 048059           74 SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVP-TEEGEQFSQEN-----  145 (198)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~-~~~~~~~~~~~-----  145 (198)
                      +..-....-.|..++|+|+......+.++.++  +.+...+  ..+||+||.|...+.  ... .+..++..+.+     
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~c~--klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELLCK--KLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhhcc--ceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            33222233457789999998765555555433  2232222  356677888864332  111 12222222221     


Q ss_pred             --CCeEEEEccCCC----CCHHHHHHHHHHHHHhhCCC
Q 048059          146 --GMFYIETSAKTA----QNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       146 --~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~~  177 (198)
                        +.|++++||++|    +++.++.+.|..++.+.+++
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd  198 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD  198 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence              478999999999    67777777777777665554

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.43  E-value=1e-12  Score=103.05  Aligned_cols=168  Identities=15%  Similarity=0.115  Sum_probs=115.0

Q ss_pred             CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh----ccc----
Q 048059            4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY----HSL----   75 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~----   75 (198)
                      |+-......++|+|-|++|||||++.++.......+.+.........  +++.+...++++||||.-..    +..    
T Consensus       162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmq  239 (620)
T KOG1490|consen  162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ  239 (620)
T ss_pred             CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHH
Confidence            44456678899999999999999999988776655555433222222  34556678899999995211    001    


Q ss_pred             -chhhhcCCCeEEEEEECC--ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH---HHHHHHHHHcCCeE
Q 048059           76 -APMYYRGAAAAVVVYDIS--NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT---EEGEQFSQENGMFY  149 (198)
Q Consensus        76 -~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~  149 (198)
                       ..+..+--.+|+|+.|++  ...|.++...++..+.... .+.|.++|+||+|+.....++.   +....+...-++++
T Consensus       240 sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v  318 (620)
T KOG1490|consen  240 IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV  318 (620)
T ss_pred             HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence             112222235678888886  4567777777888887764 5679999999999865544443   33444455556899


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHhh
Q 048059          150 IETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      +++|..+.+|+.++....++.++..
T Consensus       319 ~~tS~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  319 VQTSCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             EEecccchhceeeHHHHHHHHHHHH
Confidence            9999999999999888877765543

>PRK13768 GTPase; Provisional

Probab=99.43  E-value=1e-12  Score=98.01  Aligned_cols=110  Identities=24%  Similarity=0.207  Sum_probs=69.0

Q ss_pred             EEEEEeCCCchhh---cccchhhhc---C--CCeEEEEEECCChhhHHHH--HHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           60 KFDIWDTAGQERY---HSLAPMYYR---G--AAAAVVVYDISNMDTFNRA--NKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        60 ~~~l~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      .+.+||+||+.+.   +..+..+++   .  ++++++++|.+........  ..|+...... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            5789999998653   333333332   2  8999999999654333222  1222222211 24679999999999864


Q ss_pred             CCCCCHHHHHH----------------------------HHHHcC--CeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          130 QREVPTEEGEQ----------------------------FSQENG--MFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       130 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      ..+.  +....                            ..+..+  .+++++|++++.|+++++++|.+.+.
T Consensus       177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            4322  11111                            111223  57899999999999999999987663

>PTZ00258 GTP-binding protein; Provisional

Probab=99.42  E-value=6.9e-12  Score=98.03  Aligned_cols=85  Identities=19%  Similarity=0.097  Sum_probs=54.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY   72 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~   72 (198)
                      ...++|+|+|.||||||||+++|++........|..+.+.....+.+.+.               ..++.++|+||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            44689999999999999999999876644333333222211222222221               235889999995321


Q ss_pred             c----cc---chhhhcCCCeEEEEEEC
Q 048059           73 H----SL---APMYYRGAAAAVVVYDI   92 (198)
Q Consensus        73 ~----~~---~~~~~~~~d~~i~v~d~   92 (198)
                      .    .+   .-..++++|++++|+|.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~  125 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRA  125 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence            1    11   22345789999999997

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.39  E-value=5.4e-12  Score=92.31  Aligned_cols=114  Identities=14%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             EEEEEEeCCCchhhcc------cchhhhcC--CCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059           59 VKFDIWDTAGQERYHS------LAPMYYRG--AAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDL  127 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~------~~~~~~~~--~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  127 (198)
                      ++..++||||+-+...      .....+..  .-++++|+|...   +.+|  ..+.+-...-....++|++++.||+|+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYAcSilyktklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYACSILYKTKLPFIVVFNKTDV  193 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHHHHHHHhccCCeEEEEecccc
Confidence            5678999999843322      12222222  345566666532   2222  122222222233467899999999998


Q ss_pred             CCCC-----CCCHHHHHHHHH---------------------HcCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059          128 DSQR-----EVPTEEGEQFSQ---------------------ENGMFYIETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       128 ~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ....     ..+.+.-++...                     ..++..+-+|+.+|.|.+++|..+...+.+.
T Consensus       194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            5321     001111111111                     1356789999999999999999887765543

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.38  E-value=7.5e-12  Score=90.85  Aligned_cols=151  Identities=16%  Similarity=0.103  Sum_probs=83.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------CCCCcce------eEEEEEEEe------------------CC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQ--------QEPTIGA------AFFTQILSL------------------SE   56 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~--------~~~~~~~------~~~~~~~~~------------------~~   56 (198)
                      ....|.++|..|||||||+++++.......        .......      ......+.-                  ..
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            357899999999999999999875311000        0000000      000000000                  00


Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE  136 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  136 (198)
                      ....+.+++|.|.-...   ..+....+..+.|+|..+.+...  .... ..     ...|.++++||+|+........+
T Consensus       101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHccccchhhHH
Confidence            12356677777721100   01112345556777776543211  1111 11     22467899999998654332233


Q ss_pred             HHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHH
Q 048059          137 EGEQFSQEN--GMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      ......+..  .++++++||+++.|++++++++.+.
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            444444443  3789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.38  E-value=6.7e-13  Score=97.88  Aligned_cols=112  Identities=21%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             EEEEEeCCCchhhcccchhhh--------cCCCeEEEEEECCChhh-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059           60 KFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDISNMDT-FNRANKLVQELQRQGNQIVVMALAANKSDLDSQ  130 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (198)
                      .+.++|||||.+....|....        ...-++++++|.....+ ...+..++..+.....-+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            578999999988777666554        45668888999753322 122233333333222346799999999998652


Q ss_pred             CC------------C-------CHHHHHHHHHH---cC-C-eEEEEccCCCCCHHHHHHHHHHHH
Q 048059          131 RE------------V-------PTEEGEQFSQE---NG-M-FYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       131 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ..            .       ......+++.-   .+ . .++.+|+.+++++.+++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            10            0       01111122221   12 3 699999999999999999877653

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01882 BMS1 Bms1

Probab=99.37  E-value=2.1e-11  Score=89.59  Aligned_cols=140  Identities=14%  Similarity=0.092  Sum_probs=82.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ......|+++|++|+|||||++.+.+...........|.    ..+ ......++.++||||.-  ... ......+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence            344678999999999999999999864322111111221    111 11245567899999863  222 2345789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCCC---HHHHHH-HHHH--cCCeEEEEccCCCC
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVP---TEEGEQ-FSQE--NGMFYIETSAKTAQ  158 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~  158 (198)
                      ++++|.+....... ..++..+..   .+.| +++++||.|+.......   .+.++. +..+  .+.+++.+||++..
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            99999875443222 233333333   2345 45599999985322111   111211 2221  24689999999863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.35  E-value=7e-12  Score=87.56  Aligned_cols=149  Identities=19%  Similarity=0.181  Sum_probs=88.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEE---------------EEEEeC-------------------
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFT---------------QILSLS-------------------   55 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~-------------------   55 (198)
                      -+.|.|.|++|||||+|+.+++......-....+..+.++               ..+..+                   
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            4899999999999999999876532111111111111111               000000                   


Q ss_pred             -CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCCCCCC
Q 048059           56 -EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI--VVMALAANKSDLDSQRE  132 (198)
Q Consensus        56 -~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~~  132 (198)
                       .....+.|++++|+ -.-...  +.-..+.-|+|+|.+..+.          +-.+..+.  .-=++|+||.|+...-.
T Consensus        93 ~~~~~Dll~iEs~GN-L~~~~s--p~L~d~~~v~VidvteGe~----------~P~K~gP~i~~aDllVInK~DLa~~v~  159 (202)
T COG0378          93 DFPDLDLLFIESVGN-LVCPFS--PDLGDHLRVVVIDVTEGED----------IPRKGGPGIFKADLLVINKTDLAPYVG  159 (202)
T ss_pred             cCCcCCEEEEecCcc-eecccC--cchhhceEEEEEECCCCCC----------CcccCCCceeEeeEEEEehHHhHHHhC
Confidence             01134556666662 111111  1112337788888876542          11111111  12268899999988777


Q ss_pred             CCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          133 VPTEEGEQFSQEN--GMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       133 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      .+.+...+-+++.  +++++++|+++|+|++++++|+...+
T Consensus       160 ~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         160 ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            7778887777765  57999999999999999999987654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.35  E-value=3.9e-11  Score=92.17  Aligned_cols=108  Identities=13%  Similarity=0.067  Sum_probs=67.3

Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CH
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PT  135 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~  135 (198)
                      .+.+.|+||+|......   .....+|.++++.+...+..+....   ..+.+.     .-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~-----aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIMEL-----ADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhhh-----hheEEeehhcccchhHHHHHH
Confidence            46788999999753222   2466799999997644444443332   112121     12788999998643321  11


Q ss_pred             HHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          136 EEGEQFSQE-------NGMFYIETSAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       136 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      .+.......       +..+++.+||+++.|++++++.|.+.+....+
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~  264 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA  264 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence            122222211       22579999999999999999999997764443

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.34  E-value=5.9e-11  Score=90.85  Aligned_cols=123  Identities=19%  Similarity=0.249  Sum_probs=87.6

Q ss_pred             eCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhH-------HHHHH---HHHHHHH-hCCCCceEEEEE
Q 048059           54 LSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-------NRANK---LVQELQR-QGNQIVVMALAA  122 (198)
Q Consensus        54 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~---~~~~~~~-~~~~~~p~iiv~  122 (198)
                      +.-+...+.+.|++|+..-+.-|.+++.+++++|||+++++....       ..+..   +++.+.+ ..-.+.+++++.
T Consensus       190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL  269 (354)
T KOG0082|consen  190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL  269 (354)
T ss_pred             EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence            333457788999999999999999999999999999999875432       22322   2333322 334678999999


Q ss_pred             eCCCCCC--------------C-CCCCHHHHHHHHHHc----------CCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          123 NKSDLDS--------------Q-REVPTEEGEQFSQEN----------GMFYIETSAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       123 nK~Dl~~--------------~-~~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      ||.|+-+              . -....+++..+....          .+.++.+.|.+..+|+.+|+...+.+...+-
T Consensus       270 NK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  270 NKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             ecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence            9999821              1 123455565555431          3446777999999999999999998887654

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.34  E-value=2e-11  Score=103.60  Aligned_cols=117  Identities=21%  Similarity=0.177  Sum_probs=76.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC--CC---------CC-------CCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY--DQ---------QE-------PTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~--~~---------~~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ..-.+|+++|+.++|||||+.+|+...-.  ..         +.       -|+........+...+..+.+.|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            34568999999999999999999852211  00         00       01111111112223445678999999999


Q ss_pred             hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      ..|.......++.+|++|+|+|+......+....|. ....   .+.|+++++||.|..
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH---cCCCeEEEEECchhh
Confidence            988888888889999999999987653322222232 2222   234678899999975

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.33  E-value=4.2e-11  Score=90.53  Aligned_cols=152  Identities=22%  Similarity=0.208  Sum_probs=101.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC------------CCC-------------------CCCcceeEEEEEEEeCC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY------------DQQ-------------------EPTIGAAFFTQILSLSE   56 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~------------~~~-------------------~~~~~~~~~~~~~~~~~   56 (198)
                      ...++.+-+|...-||||||-+|+.....            ...                   ....|.++.....-+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            45689999999999999999999853110            000                   01113333333333444


Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE  136 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  136 (198)
                      ...+|.+-||||++.|....-.-..-+|+.|+++|+... -+++..+ ...+.... .-.++++.+||.||....+...+
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASLL-GIRHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHHh-CCcEEEEEEeeecccccCHHHHH
Confidence            556788999999999988777777889999999998432 2333322 22233322 33578999999999865543333


Q ss_pred             H----HHHHHHHcCC---eEEEEccCCCCCHHH
Q 048059          137 E----GEQFSQENGM---FYIETSAKTAQNINE  162 (198)
Q Consensus       137 ~----~~~~~~~~~~---~~~~~Sa~~~~~i~~  162 (198)
                      .    -..|+..+++   .++++||..|+|+-.
T Consensus       161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            3    3556677765   589999999998753

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.33  E-value=2.2e-11  Score=94.29  Aligned_cols=160  Identities=17%  Similarity=0.188  Sum_probs=80.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcc---eeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh-----
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIG---AAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY-----   79 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~-----   79 (198)
                      ...++|+|+|.+|+|||||||+|.+-....+.....|   ++.....+.. ...-.+.+||.||.....-....|     
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            3578999999999999999999987433322222222   1111222211 112247899999964333223333     


Q ss_pred             hcCCCeEEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCC-------CCCCCCH----HHHHHHHHH---
Q 048059           80 YRGAAAAVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLD-------SQREVPT----EEGEQFSQE---  144 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~-------~~~~~~~----~~~~~~~~~---  144 (198)
                      +...|.+|++.+.    .|.... .+...+..   .+.|+++|-||.|..       ..+....    +++++.+..   
T Consensus       112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~  184 (376)
T PF05049_consen  112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ  184 (376)
T ss_dssp             GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence            4568988887663    233332 23333443   356899999999961       1222322    333333332   


Q ss_pred             -cCC---eEEEEccCC--CCCHHHHHHHHHHHHHhhC
Q 048059          145 -NGM---FYIETSAKT--AQNINELFYEIAKRLARVS  175 (198)
Q Consensus       145 -~~~---~~~~~Sa~~--~~~i~~~~~~l~~~~~~~~  175 (198)
                       .++   ++|.+|..+  ..++..+.+.|.+.+....
T Consensus       185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence             233   588899876  4568888888887665543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.32  E-value=1.2e-10  Score=90.21  Aligned_cols=83  Identities=18%  Similarity=0.131  Sum_probs=52.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh---
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY---   72 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~---   72 (198)
                      ++|+++|.||||||||+++|++........|..+.+.....+.+.+.               ..++.++|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987643333232221211222222221               135899999995321   


Q ss_pred             -cccch---hhhcCCCeEEEEEECC
Q 048059           73 -HSLAP---MYYRGAAAAVVVYDIS   93 (198)
Q Consensus        73 -~~~~~---~~~~~~d~~i~v~d~~   93 (198)
                       ..+..   ..++++|++++|+|..
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             11112   2357899999999973

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.31  E-value=1e-11  Score=106.58  Aligned_cols=118  Identities=17%  Similarity=0.148  Sum_probs=78.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC--C---------CCCC---CcceeEEE--EEEEe--------------CC
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY--D---------QQEP---TIGAAFFT--QILSL--------------SE   56 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~--~---------~~~~---~~~~~~~~--~~~~~--------------~~   56 (198)
                      .+.-.||+|+|+.++|||||+.+|+...-.  .         .+.+   .-+.++..  ..+..              ..
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            344579999999999999999999853211  0         0000   00111111  11111              22


Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      ..+.+.++||||+.+|.......++.+|++|+|+|+...-......-|.. +.   ..+.|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HH---HCCCCEEEEEECCccc
Confidence            36778999999999998888888899999999999986644333333322 22   2457899999999975

>PTZ00416 elongation factor 2; Provisional

Probab=99.31  E-value=1.1e-11  Score=106.31  Aligned_cols=117  Identities=15%  Similarity=0.156  Sum_probs=76.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC--CC---------CCC---CcceeEEE--EEEEeC--------CcEEEEEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY--DQ---------QEP---TIGAAFFT--QILSLS--------EATVKFDI   63 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~--~~---------~~~---~~~~~~~~--~~~~~~--------~~~~~~~l   63 (198)
                      ..-.||+|+|+.++|||||+++|+...-.  ..         +.+   .-+.+...  ..+.+.        +..+.+.|
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            34569999999999999999999862110  00         000   00111111  111121        23577899


Q ss_pred             EeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           64 WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        64 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      +||||+.++.......++.+|++|+|+|+.+.-.... +..+..+..   .+.|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence            9999999888778888899999999999886533222 233333332   346899999999985

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.29  E-value=2.9e-11  Score=84.87  Aligned_cols=63  Identities=21%  Similarity=0.182  Sum_probs=44.0

Q ss_pred             EEEEEeCCCch----hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 048059           60 KFDIWDTAGQE----RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS  125 (198)
Q Consensus        60 ~~~l~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  125 (198)
                      .+.|+||||..    .....+..++..+|++|+|.+.+...+-.....+.+.....   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            37799999964    23356778889999999999998866555555555554433   23488888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.29  E-value=9.7e-12  Score=88.73  Aligned_cols=146  Identities=18%  Similarity=0.279  Sum_probs=86.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhh----cc-cchhhhcCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERY----HS-LAPMYYRGA   83 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~----~~-~~~~~~~~~   83 (198)
                      .-||+++|.+||||||+=..+..+... ....-.|.+....+-+... +++.+.+||.+|++.+    .+ .....+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a-~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIA-RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhh-hhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            358999999999999985544432211 1111122222222222221 2356889999999733    22 455678999


Q ss_pred             CeEEEEEECCChhhHHHHH---HHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHHHH----HHHHHHcCCeEEEEcc
Q 048059           84 AAAVVVYDISNMDTFNRAN---KLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTEEG----EQFSQENGMFYIETSA  154 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~----~~~~~~~~~~~~~~Sa  154 (198)
                      +++|+|||+...+-..++.   ..++.+..++ +...+.++.+|.|+....  +....+.    ..+....++.++++|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            9999999998765444443   3444555554 566777888999996433  2222222    2223334556777776


Q ss_pred             CCC
Q 048059          155 KTA  157 (198)
Q Consensus       155 ~~~  157 (198)
                      .+.
T Consensus       162 wDe  164 (295)
T KOG3886|consen  162 WDE  164 (295)
T ss_pred             hhH
Confidence            653

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=1.1e-10  Score=93.23  Aligned_cols=154  Identities=21%  Similarity=0.217  Sum_probs=102.3

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhC--------------------CCC---------CCCCCCcceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKG--------------------QFY---------DQQEPTIGAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~~   57 (198)
                      ....++.+++|...+|||||+.+|+..                    +..         ......-|++......+++-.
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            345799999999999999999998742                    100         001122355666666777777


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHH-------HHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFN-------RANKLVQELQRQGNQIVVMALAANKSDLDSQ  130 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (198)
                      ...++|+|+||+..|....-.-..++|+.++|+|++.. .|+       +..+....++..  ....++|++||.|+.+=
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~W  330 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSW  330 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCc
Confidence            88899999999888877777777889999999998653 333       222333333332  24568899999998643


Q ss_pred             CCCCHHHH----HHHH-HHc-----CCeEEEEccCCCCCHHHH
Q 048059          131 REVPTEEG----EQFS-QEN-----GMFYIETSAKTAQNINEL  163 (198)
Q Consensus       131 ~~~~~~~~----~~~~-~~~-----~~~~~~~Sa~~~~~i~~~  163 (198)
                      .+...+++    ..|. +..     ++.|++||+..|+|+-..
T Consensus       331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            22222222    2233 222     356999999999986544

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.26  E-value=7.3e-10  Score=86.28  Aligned_cols=154  Identities=12%  Similarity=0.187  Sum_probs=94.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC----CCCC----------CCCCCcc---e----eE---EEEEE-EeCCcEEEEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG----QFYD----------QQEPTIG---A----AF---FTQIL-SLSEATVKFDIW   64 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~----~~~~----------~~~~~~~---~----~~---~~~~~-~~~~~~~~~~l~   64 (198)
                      .+-|.|+|+.++|||||+++|.+.    ....          -..+..|   +    -+   ....+ ..++...++.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            578999999999999999999987    2221          1112222   1    11   11122 223455788999


Q ss_pred             eCCCchhh--------cc------c---------------chhhhc-CCCeEEEEE-ECC----ChhhH-HHHHHHHHHH
Q 048059           65 DTAGQERY--------HS------L---------------APMYYR-GAAAAVVVY-DIS----NMDTF-NRANKLVQEL  108 (198)
Q Consensus        65 D~~g~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~-~~~~~~~~~~  108 (198)
                      ||+|...-        ..      -               +...+. .+++.|+|. |.+    .++.+ +.-+.++..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            99985211        00      0               223344 689888888 653    11222 3335666666


Q ss_pred             HHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC--CCCHHHHHHHHH
Q 048059          109 QRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT--AQNINELFYEIA  168 (198)
Q Consensus       109 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~  168 (198)
                      ..   .++|++++.|+.|.....  ..+...++..+++++++.+|+..  .+++..+++.++
T Consensus       177 k~---~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       177 KE---LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             Hh---cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence            55   457999999999943222  44555677778899888877654  445665555544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01900 YchF YchF subfamily

Probab=99.24  E-value=1.4e-10  Score=86.96  Aligned_cols=80  Identities=18%  Similarity=0.139  Sum_probs=50.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh----c
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY----H   73 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~----~   73 (198)
                      |+++|.|+||||||+++|++........|..+.+.....+.+.+.               ...++++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999987654333332222221222223222               235899999995321    1


Q ss_pred             ccchh---hhcCCCeEEEEEEC
Q 048059           74 SLAPM---YYRGAAAAVVVYDI   92 (198)
Q Consensus        74 ~~~~~---~~~~~d~~i~v~d~   92 (198)
                      .+...   .++++|++++|+|.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeC
Confidence            12222   34789999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1e-10  Score=95.79  Aligned_cols=161  Identities=20%  Similarity=0.218  Sum_probs=104.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCC----CCCcceeEEEEE--------EEeCC----cEEEEEEEeCCCchhhc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQ----EPTIGAAFFTQI--------LSLSE----ATVKFDIWDTAGQERYH   73 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~----~~~~~~~~~~~~--------~~~~~----~~~~~~l~D~~g~~~~~   73 (198)
                      ..=++|+|+..+|||-|+..+.+......-    ...+|.++.+..        +.-..    +---+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            455899999999999999999875433221    123344433322        00000    01136789999999999


Q ss_pred             ccchhhhcCCCeEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC-------------CHH-
Q 048059           74 SLAPMYYRGAAAAVVVYDISNM---DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV-------------PTE-  136 (198)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-------------~~~-  136 (198)
                      .+.......+|.+|+|+|+...   ++.+.+    +.++   .++.|+||..||+|....+..             ... 
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v  627 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV  627 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence            9999999999999999998754   333332    2222   367899999999996322110             001 


Q ss_pred             ----------HHHHHHH-HcC-------------CeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          137 ----------EGEQFSQ-ENG-------------MFYIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       137 ----------~~~~~~~-~~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                                .+.+|+. .++             +.++++||..|+||.+++-+|+.........
T Consensus       628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~  692 (1064)
T KOG1144|consen  628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE  692 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence                      1111111 111             3478999999999999999999876655443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.24  E-value=8.1e-11  Score=90.08  Aligned_cols=104  Identities=20%  Similarity=0.089  Sum_probs=63.7

Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH--
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT--  135 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--  135 (198)
                      .+.+.|+||+|.....   ......+|.++++-...   +-+++......+     ...|.++++||+|+........  
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            4678899999854211   23456678888885433   334443333333     2346789999999864332110  


Q ss_pred             H----HHHHHHH---HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          136 E----EGEQFSQ---ENGMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       136 ~----~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      .    ....+..   .+..+++.+||+++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            0    0011111   12246899999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.23  E-value=2e-11  Score=91.26  Aligned_cols=156  Identities=19%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC--CCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--hcccc------h
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ--EPTIGAAFFTQILSLSEATVKFDIWDTAGQER--YHSLA------P   77 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~------~   77 (198)
                      ....-|.++|.+|+|||||+++|+........  ..|...+.-..  ..... ..+.+.||.|.-.  -..+.      -
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a--~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL  252 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSA--HLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL  252 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhc--cCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH
Confidence            33456899999999999999999964433222  22333222122  22222 2467899998521  11111      1


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce----EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV----MALAANKSDLDSQREVPTEEGEQFSQENGMFYIETS  153 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (198)
                      .....+|.++.|.|+++|..-++.+..+..+.....+..|    ++=|-||.|..+....        ..+++  .+.+|
T Consensus       253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~is  322 (410)
T KOG0410|consen  253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGIS  322 (410)
T ss_pred             HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--ccccc
Confidence            2346799999999999998877777777777665433333    3456677886432211        11122  56789


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCC
Q 048059          154 AKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      +++|+|++++.+.+-.++.....
T Consensus       323 altgdgl~el~~a~~~kv~~~t~  345 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVASETT  345 (410)
T ss_pred             cccCccHHHHHHHHHHHhhhhhe
Confidence            99999999999998887765544

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2.9e-10  Score=94.91  Aligned_cols=125  Identities=22%  Similarity=0.114  Sum_probs=89.3

Q ss_pred             CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCC--C------------CCCCcceeEEEEEEEeCCc-EEEEEE
Q 048059            1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKG--QFYD--Q------------QEPTIGAAFFTQILSLSEA-TVKFDI   63 (198)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~--~------------~~~~~~~~~~~~~~~~~~~-~~~~~l   63 (198)
                      |++....+.-.||.|+|+..+|||||..+|+..  ....  .            ....-|.+.........+. .+.+.|
T Consensus         1 ~~~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNl   80 (697)
T COG0480           1 MARLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINL   80 (697)
T ss_pred             CCcccccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEE
Confidence            444444566789999999999999999998742  1110  0            0011244555555555556 589999


Q ss_pred             EeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           64 WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        64 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      +|||||-+|.......++-+|++++|+|+...-..+...-|.+..    ..+.|.++++||.|...
T Consensus        81 IDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~  142 (697)
T COG0480          81 IDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLG  142 (697)
T ss_pred             eCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccc
Confidence            999999999999999999999999999998654444434444432    34578999999999753

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.18  E-value=6.2e-10  Score=91.21  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=71.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----------cch
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----------LAP   77 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~   77 (198)
                      ...++|+|+|.+|+||||++|.|++...........+++. ...+........+.++||||......          ...
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            3458999999999999999999998754332211112221 11111111235688999999653210          111


Q ss_pred             hhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCCC
Q 048059           78 MYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI--VVMALAANKSDLDS  129 (198)
Q Consensus        78 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~  129 (198)
                      .++.  ..|++|+|..++.......-..++..+....+..  ..+|||.|+.|...
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            2333  5899999988753322212224444554433321  35889999999754

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.17  E-value=1.5e-10  Score=91.94  Aligned_cols=163  Identities=21%  Similarity=0.388  Sum_probs=121.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      .+.+|+.|+|..++|||+|+.+++.+.|.....+. +.. +.+++..++....+.+.|.+|...     ..|...+|++|
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~-~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI  100 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGR-FKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV  100 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCCc-Ccc-ceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence            45789999999999999999999988877655443 333 355566677777788888888432     34666789999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCC--CCCCCCHHHHHHHHH-HcCCeEEEEccCCCCCHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLD--SQREVPTEEGEQFSQ-ENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      |||...+..+++.+..+...+.... ...+|+++++++.-..  ..+.+....+..++. ...+.+|+.++.+|.++..+
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence            9999999999999988777766533 3557788888775543  233444455555544 44678999999999999999


Q ss_pred             HHHHHHHHHhhCCC
Q 048059          164 FYEIAKRLARVSPP  177 (198)
Q Consensus       164 ~~~l~~~~~~~~~~  177 (198)
                      |+.+..++......
T Consensus       181 f~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  181 FQEVAQKIVQLRKY  194 (749)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99998887766444

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.15  E-value=2.1e-09  Score=81.23  Aligned_cols=141  Identities=15%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---c
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ----------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---L   75 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~   75 (198)
                      ..++|+|+|.+|+|||||++.|++.......          ..+.........+.-++..+.+.++||||......   .
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4799999999999999999999985443321          11222233333445566778999999998421100   0


Q ss_pred             -----------chhhh-------------cCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059           76 -----------APMYY-------------RGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQ  130 (198)
Q Consensus        76 -----------~~~~~-------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (198)
                                 ...++             ...|+++|.++.+... +..+ ...+..+    ....++|-|+.|+|.-..
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L----s~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL----SKRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH----TTTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh----cccccEEeEEecccccCH
Confidence                       00111             2478999999976422 2222 1233333    345688999999996331


Q ss_pred             CCC--CHHHHHHHHHHcCCeEEEEcc
Q 048059          131 REV--PTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       131 ~~~--~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                      .+.  ..+.+.......++.+|....
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~~  183 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFPE  183 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S-----
T ss_pred             HHHHHHHHHHHHHHHHcCceeecccc
Confidence            111  112223333345666555433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.15  E-value=1.6e-10  Score=86.78  Aligned_cols=54  Identities=17%  Similarity=0.134  Sum_probs=39.4

Q ss_pred             eEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHH
Q 048059          117 VMALAANKSDLDSQREVPTEEGEQFSQEN--GMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       117 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      .-++|+||+|+........+...+..+..  .++++.+||++|+|++++++||..+
T Consensus       232 ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        232 ASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             CcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45788899999653332334444444443  5789999999999999999999774

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=7.7e-10  Score=86.09  Aligned_cols=157  Identities=18%  Similarity=0.116  Sum_probs=104.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      -|...|.-.-|||||+..+++..-+... ...-|.+..............+.|+|.||++++-...-+.+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            4678899999999999999985533211 112233333444444444557899999999988776667777899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE---NGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +.++.-..+..+. +..+...  .....+|++||+|..+...+ .+..++....   .+.+++.+|+++|+|++++.+.|
T Consensus        82 ~~deGl~~qtgEh-L~iLdll--gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l  157 (447)
T COG3276          82 AADEGLMAQTGEH-LLILDLL--GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL  157 (447)
T ss_pred             eCccCcchhhHHH-HHHHHhc--CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence            9965433333222 2222222  33457899999998653311 2222333322   34678999999999999999999


Q ss_pred             HHHHH
Q 048059          168 AKRLA  172 (198)
Q Consensus       168 ~~~~~  172 (198)
                      .....
T Consensus       158 ~~L~~  162 (447)
T COG3276         158 IDLLE  162 (447)
T ss_pred             HHhhh
Confidence            98774

>smart00053 DYNc Dynamin, GTPase

Probab=99.15  E-value=1.1e-09  Score=80.76  Aligned_cols=68  Identities=16%  Similarity=0.101  Sum_probs=42.0

Q ss_pred             EEEEEEeCCCchh-------------hcccchhhhc-CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059           59 VKFDIWDTAGQER-------------YHSLAPMYYR-GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK  124 (198)
Q Consensus        59 ~~~~l~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  124 (198)
                      ..+.++|+||...             ...+...|++ ..+++++|+|++..-.-.........+.   ....++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            4688999999742             1224556666 4568899998754322222222222232   245689999999


Q ss_pred             CCCCC
Q 048059          125 SDLDS  129 (198)
Q Consensus       125 ~Dl~~  129 (198)
                      .|...
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.10  E-value=2e-09  Score=85.46  Aligned_cols=114  Identities=20%  Similarity=0.248  Sum_probs=78.1

Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh-------HHHHH---HHHHHHHH-hCCCCceEEEEEeCC
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT-------FNRAN---KLVQELQR-QGNQIVVMALAANKS  125 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~---~~~~~~~~-~~~~~~p~iiv~nK~  125 (198)
                      ....+.++|++|+...+..|.+++.+++++|||+++++...       ...+.   .+++.+.. ..-.+.|++|+.||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            45568899999999999999999999999999999875422       12232   23333332 333678999999999


Q ss_pred             CCC------CC----------C--CCCHHHHHHHHHHc------------CCeEEEEccCCCCCHHHHHHHHHHH
Q 048059          126 DLD------SQ----------R--EVPTEEGEQFSQEN------------GMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       126 Dl~------~~----------~--~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |+-      ..          -  .-+.+.+..+....            .+.++.++|.+..++..+|+.+.+.
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            961      11          0  13445565555431            1246688999999999999887764

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=8.2e-09  Score=79.25  Aligned_cols=84  Identities=19%  Similarity=0.141  Sum_probs=54.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEe----------C----CcEEEEEEEeCCCc----
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSL----------S----EATVKFDIWDTAGQ----   69 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~----------~----~~~~~~~l~D~~g~----   69 (198)
                      .+++.|+|.||||||||.++++.........|  |+..+.....+..          .    .....+.++|.+|-    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            37899999999999999999998664433333  3332222222111          0    12357889999875    


Q ss_pred             hhhcccchhh---hcCCCeEEEEEECC
Q 048059           70 ERYHSLAPMY---YRGAAAAVVVYDIS   93 (198)
Q Consensus        70 ~~~~~~~~~~---~~~~d~~i~v~d~~   93 (198)
                      ..-..+-..|   ++++|+++.|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            2233333334   57899999999875

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.5e-09  Score=78.35  Aligned_cols=164  Identities=19%  Similarity=0.278  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---cchhhhcCCCeEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---LAPMYYRGAAAAV   87 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~~i   87 (198)
                      .+|+++|...|||||+-+.......+.+..--.. +.....-.+.+.-+.+++||.||+-.+..   -.+..++++.++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflES-Tski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLES-TSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeec-cCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            5599999999999999877665543322211000 00011112333456789999999865543   2445678999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHH--hCCCCceEEEEEeCCCCCCCC-------CCCHHHHHHHHH----HcCCeEEEEcc
Q 048059           88 VVYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANKSDLDSQR-------EVPTEEGEQFSQ----ENGMFYIETSA  154 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~p~iiv~nK~Dl~~~~-------~~~~~~~~~~~~----~~~~~~~~~Sa  154 (198)
                      ||+|+.+ +-.+.+.++...+.+  ..+++..+-|.+.|.|...+.       .+......+++.    +..+.++.+|.
T Consensus       107 fvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            9999865 345555555555544  235778888999999974321       111111111111    22345777777


Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCC
Q 048059          155 KTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      .+ ..+-++|..+++++.+..+.
T Consensus       186 yD-HSIfEAFSkvVQkLipqLpt  207 (347)
T KOG3887|consen  186 YD-HSIFEAFSKVVQKLIPQLPT  207 (347)
T ss_pred             cc-hHHHHHHHHHHHHHhhhchh
Confidence            66 45999999999999887765

>cd01855 YqeH YqeH

Probab=99.05  E-value=1.5e-09  Score=77.83  Aligned_cols=94  Identities=23%  Similarity=0.143  Sum_probs=65.8

Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcC
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENG  146 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~  146 (198)
                      +..++..+++++|++++|+|++++...     |...+... ..+.|+++|+||+|+..... ..+....+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            577788899999999999999875421     22222222 24579999999999864332 233344443     2233


Q ss_pred             C---eEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          147 M---FYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       147 ~---~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      .   .++.+||+++.|+++++++|.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3   5899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.03  E-value=5.9e-09  Score=79.60  Aligned_cols=139  Identities=14%  Similarity=0.169  Sum_probs=84.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc---c
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ----------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH---S   74 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~   74 (198)
                      -..++|.++|+.|+|||||+|.|++......          ..++.........+.-++..+.++++||||.-..-   .
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            3479999999999999999999998633222          22333444445555556677889999999852111   1


Q ss_pred             -----------cchhhh--------------cCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           75 -----------LAPMYY--------------RGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        75 -----------~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                                 ....|+              ...|+++|.+..+. ..+..+ ...+..+.    ..+.+|=|+.|+|.-
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS----KRVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence                       111121              13788888887653 233333 23344443    334577778999974


Q ss_pred             CCC--CCCHHHHHHHHHHcCCeEEE
Q 048059          129 SQR--EVPTEEGEQFSQENGMFYIE  151 (198)
Q Consensus       129 ~~~--~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ...  ....+.+.+....+++++|.
T Consensus       176 T~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         176 TDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCceeC
Confidence            322  22234445555667888775

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=4.8e-09  Score=77.82  Aligned_cols=147  Identities=16%  Similarity=0.162  Sum_probs=93.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCC----------CCCC----CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ----------FYDQ----QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      ..+.+||..+|.-+-|||||..+++.--          |+..    ....-|.++...++.+.-....+-.+|+||+..|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            4567999999999999999998876411          1100    0112244554555555555566779999999888


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC---CCHHHHHHHHHHcCC--
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE---VPTEEGEQFSQENGM--  147 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~--  147 (198)
                      -...-.-..++|+.|+|++++|.. +.+....+...+..  .-..++++.||+|+.+..+   ....+.+++...+++  
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g  165 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG  165 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence            765555667899999999998743 33333332222222  2235788899999976443   233455666666654  


Q ss_pred             ---eEEEEccCC
Q 048059          148 ---FYIETSAKT  156 (198)
Q Consensus       148 ---~~~~~Sa~~  156 (198)
                         |++.-||..
T Consensus       166 d~~Pii~gSal~  177 (394)
T COG0050         166 DDTPIIRGSALK  177 (394)
T ss_pred             CCcceeechhhh
Confidence               566666654

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.99  E-value=4.3e-08  Score=71.34  Aligned_cols=153  Identities=17%  Similarity=0.180  Sum_probs=97.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-------ccchhhhcC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-------SLAPMYYRG   82 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~   82 (198)
                      ..+|+++|-|.+|||||+..++...-..........+.-+-.+.+.+.  .+++.|.||.-.-.       +..-+..+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeec
Confidence            578999999999999999999875533333333334444445555544  56799999853221       233345577


Q ss_pred             CCeEEEEEECCChhhHH-HHHHHHHHHHHhCC------------------------------------------------
Q 048059           83 AAAAVVVYDISNMDTFN-RANKLVQELQRQGN------------------------------------------------  113 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~------------------------------------------------  113 (198)
                      ||.+++|.|++..+.-. -++.-++.+.-+.+                                                
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~  219 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF  219 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence            99999999998655432 22332222221111                                                


Q ss_pred             -----------------CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          114 -----------------QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       114 -----------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                                       .-.+++-|-||+|     +++.++...+++..+  .+.+|+.-.-|++.+++.|-+.+
T Consensus       220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  220 REDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             ecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHh
Confidence                             1256667777777     455777888887766  34567777788888888877754

>PRK12289 GTPase RsgA; Reviewed

Probab=98.98  E-value=2.7e-09  Score=82.98  Aligned_cols=94  Identities=16%  Similarity=0.162  Sum_probs=67.4

Q ss_pred             hcccchhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYI  150 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                      ...+....+.++|.+++|+|+.++. ....+..|+.....   .+.|+++|+||+|+....+  .+........+++.++
T Consensus        79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~  153 (352)
T PRK12289         79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPL  153 (352)
T ss_pred             ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEE
Confidence            3445556689999999999998765 44456677665422   4578999999999853221  1222233346788999


Q ss_pred             EEccCCCCCHHHHHHHHHHH
Q 048059          151 ETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      .+||+++.|++++++.|...
T Consensus       154 ~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        154 FISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEcCCCCCHHHHhhhhccc
Confidence            99999999999999887653

>cd01859 MJ1464 MJ1464

Probab=98.97  E-value=1.7e-09  Score=74.96  Aligned_cols=95  Identities=17%  Similarity=0.142  Sum_probs=64.3

Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIE  151 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ++.++.+.++++|++++|+|++++..... ..+...+.   ..+.|+++|+||+|+.....  ......+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence            34566778889999999999987643222 12222221   13579999999999853211  11111333445678999


Q ss_pred             EccCCCCCHHHHHHHHHHHHH
Q 048059          152 TSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      +||+++.|++++++.|.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999987664

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.94  E-value=5.3e-09  Score=79.56  Aligned_cols=88  Identities=16%  Similarity=0.093  Sum_probs=66.9

Q ss_pred             hhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC
Q 048059           77 PMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK  155 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (198)
                      ...+.++|.+++|+|+.++. ++..++.|+..+..   .+.|+++|+||+|+....+  ......+....+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            34578999999999999887 78888888876654   3578999999999854311  122233344578899999999


Q ss_pred             CCCCHHHHHHHHHH
Q 048059          156 TAQNINELFYEIAK  169 (198)
Q Consensus       156 ~~~~i~~~~~~l~~  169 (198)
                      ++.|+++++..|..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999887653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=8.8e-09  Score=83.85  Aligned_cols=117  Identities=18%  Similarity=0.217  Sum_probs=80.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---------------cceeEE-----EEEEEeCCcEEEEEEEeC
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT---------------IGAAFF-----TQILSLSEATVKFDIWDT   66 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~---------------~~~~~~-----~~~~~~~~~~~~~~l~D~   66 (198)
                      .....+|.++|+-+.|||+|+..|..+..+.....+               -|....     ...-...++.+-+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            455689999999999999999988765432221100               011111     111123456778999999


Q ss_pred             CCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059           67 AGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL  127 (198)
Q Consensus        67 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  127 (198)
                      ||+-++.....+.++.+|++++++|+...-.+.. +..+...   .....|+++|+||.|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikha---iq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHA---IQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHH---HhccCcEEEEEehhHH
Confidence            9999999999999999999999999986654433 2222221   2356799999999995

>PRK00098 GTPase RsgA; Reviewed

Probab=98.92  E-value=5.6e-09  Score=79.88  Aligned_cols=86  Identities=21%  Similarity=0.165  Sum_probs=63.4

Q ss_pred             hhcCCCeEEEEEECCChhhHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059           79 YYRGAAAAVVVYDISNMDTFNR-ANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA  157 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (198)
                      ...++|.+++|+|++++..... +..|+..+..   .+.|+++|+||+|+..... ..+.........+.+++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3589999999999988765544 4667665543   4578999999999853222 122334445567889999999999


Q ss_pred             CCHHHHHHHHH
Q 048059          158 QNINELFYEIA  168 (198)
Q Consensus       158 ~~i~~~~~~l~  168 (198)
                      .|++++++.+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999998764

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=3.3e-08  Score=71.45  Aligned_cols=155  Identities=13%  Similarity=0.164  Sum_probs=87.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-------
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQ---------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-------   72 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------   72 (198)
                      ..++|.|+|.+|.|||||++.|+.......         ...|.........+.-++..++++++||||....       
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            379999999999999999999886543321         1122222333334445566788999999985211       


Q ss_pred             -------cccchhhh------------c--CCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCC--
Q 048059           73 -------HSLAPMYY------------R--GAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD--  128 (198)
Q Consensus        73 -------~~~~~~~~------------~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~--  128 (198)
                             +...+.|+            .  ..+.++|.+..+. .++..+ ..++..+.+.    ..++-|+.|+|..  
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeecccccH
Confidence                   11112222            1  3567777776543 444443 2344444443    3466777899953  


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059          129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      +++..-.+.+++-...+++.+++-.+-+.+.-+..++.-+
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kv  239 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKV  239 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHH
Confidence            2222223344444455677777766665544444444433

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=3.3e-08  Score=77.06  Aligned_cols=136  Identities=18%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh--CCC--------------CCCC----CCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK--GQF--------------YDQQ----EPTIGAAFFTQILSLSEATVKFDIWDTA   67 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~--------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~   67 (198)
                      .......|+-+|.+|||||-..|+-  +..              ....    ...-|....+-.++++.....+.|.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            3456788999999999999998762  110              0000    1122455566677788888889999999


Q ss_pred             CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 048059           68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM  147 (198)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  147 (198)
                      |++.|..-+-..+--+|..++|+|+...-. .+...+++..+.   ++.|++=.+||.|.+....  .+...+.-..+++
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP--~ELLdEiE~~L~i  163 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREGRDP--LELLDEIEEELGI  163 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeeccccccCCh--HHHHHHHHHHhCc
Confidence            999988777777888999999999876432 222334443322   6789999999999654332  4666676666665


Q ss_pred             eE
Q 048059          148 FY  149 (198)
Q Consensus       148 ~~  149 (198)
                      ..
T Consensus       164 ~~  165 (528)
T COG4108         164 QC  165 (528)
T ss_pred             ce
Confidence            43

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=4.8e-08  Score=75.15  Aligned_cols=144  Identities=13%  Similarity=0.157  Sum_probs=83.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc------
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQ---------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH------   73 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------   73 (198)
                      ..+++.++|+.|.|||||+|.|+.......         ...+.........+.-++..+.++++||||....-      
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            359999999999999999999987643322         11233333334444455667889999999852110      


Q ss_pred             --------ccchhhh-----------c--CCCeEEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           74 --------SLAPMYY-----------R--GAAAAVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        74 --------~~~~~~~-----------~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                              .....|+           .  ..++++|.+..+.- .+..+. ..+..+    ...+.+|=|+.|+|.....
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l----~~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL----SKKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH----hccccccceeeccccCCHH
Confidence                    0111111           1  47888888886532 233322 233333    2445677788999964322


Q ss_pred             C--CCHHHHHHHHHHcCCeEEEEccCCC
Q 048059          132 E--VPTEEGEQFSQENGMFYIETSAKTA  157 (198)
Q Consensus       132 ~--~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (198)
                      +  .....+..-....++++|....-..
T Consensus       175 El~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  175 ELNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            1  1223344444556777766655443

>PRK12288 GTPase RsgA; Reviewed

Probab=98.89  E-value=1.2e-08  Score=79.34  Aligned_cols=88  Identities=16%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEEccCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV-PTEEGEQFSQENGMFYIETSAKTAQ  158 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (198)
                      ..|+|.+++|++.+...++..+..|+.....   .+.|++||+||+|+...... ............+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999887889999998765432   45788899999999643211 1122233334578899999999999


Q ss_pred             CHHHHHHHHHHH
Q 048059          159 NINELFYEIAKR  170 (198)
Q Consensus       159 ~i~~~~~~l~~~  170 (198)
                      |+++++++|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999998653

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.88  E-value=6e-09  Score=71.03  Aligned_cols=54  Identities=22%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      +++++|.+|+|||||+|+|++..... .....+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999876532 223334444444444544   4679999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.85  E-value=1.3e-08  Score=70.73  Aligned_cols=56  Identities=20%  Similarity=0.270  Sum_probs=38.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG   68 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   68 (198)
                      ..++|+++|.||+|||||+|+|.+.... ...++.|.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            3578999999999999999999976532 2233445444444444332   256999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=8.2e-08  Score=78.53  Aligned_cols=145  Identities=16%  Similarity=0.166  Sum_probs=84.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCc-------------------------------------------
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPTI-------------------------------------------   43 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~-~~~~-------------------------------------------   43 (198)
                      ....||++.|..++||||++|+++..+.-+.. .+++                                           
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            34689999999999999999999864332211 1110                                           


Q ss_pred             ceeEEEEEEEeCCc----EEEEEEEeCCCch---hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCc
Q 048059           44 GAAFFTQILSLSEA----TVKFDIWDTAGQE---RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV  116 (198)
Q Consensus        44 ~~~~~~~~~~~~~~----~~~~~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  116 (198)
                      +.....+.++-++.    .=.+.++|.||-+   ...+....+..++|++|||.++.+..+..+.+ ++.....   .+.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~---~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSE---EKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhc---cCC
Confidence            00000111111110    0146789999954   44556677788999999999987654443333 3333322   245


Q ss_pred             eEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEccCC
Q 048059          117 VMALAANKSDLDSQREVPTEEGEQFSQENG--------MFYIETSAKT  156 (198)
Q Consensus       117 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~  156 (198)
                      .+.|+.||+|.....+...+++..-...+.        =.+|+|||+.
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            688888999976544333344333333332        2478889664

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.84  E-value=9.2e-10  Score=80.69  Aligned_cols=152  Identities=18%  Similarity=0.140  Sum_probs=81.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCC----------CCCCCc----------------ceeEEEEEEEeCC------
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYD----------QQEPTI----------------GAAFFTQILSLSE------   56 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~----------~~~~~~----------------~~~~~~~~~~~~~------   56 (198)
                      ..+.|.|-|+||+|||||+++|...-...          ...|..                ....+...+...+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            45799999999999999999876421100          000100                1122233222222      


Q ss_pred             ------------cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059           57 ------------ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK  124 (198)
Q Consensus        57 ------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  124 (198)
                                  ..+.+.|++|.|--...   -....-+|.+++|....-.+..+.++.-+-.+        .=++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeC
Confidence                        13567788887632211   12345589999999876655554443222222        23577799


Q ss_pred             CCCCCCCCCCHHHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          125 SDLDSQREVPTEEGEQFSQE-------NGMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       125 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      +|....... ..+.......       +..+++.+||.++.|++++++.|.+...
T Consensus       177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            995432211 1111211111       2248999999999999999999887443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.84  E-value=2.5e-08  Score=76.61  Aligned_cols=159  Identities=14%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC--------------cceeEEEEEEEeCCc---------------
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT--------------IGAAFFTQILSLSEA---------------   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---------------   57 (198)
                      .+..+.|.+.|+.+.|||||+-.|..+..+.....+              ...+.....+.+++.               
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            455799999999999999999888876554322111              112222333333321               


Q ss_pred             ------EEEEEEEeCCCchhhcccch--hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           58 ------TVKFDIWDTAGQERYHSLAP--MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        58 ------~~~~~l~D~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                            +.-+.|+||.|++.|.+.+-  .+-.+.|..++++.+++.-+--.-+.    +.-...-..|++++.||+|+..
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH----Lgi~~a~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH----LGIALAMELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh----hhhhhhhcCCEEEEEEecccCc
Confidence                  12478999999998865433  33367899999999887644222111    1111235689999999999843


Q ss_pred             CCCC--CHHHHHHHH----------------------HH--c-CCeEEEEccCCCCCHHHHHHHHHH
Q 048059          130 QREV--PTEEGEQFS----------------------QE--N-GMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus       130 ~~~~--~~~~~~~~~----------------------~~--~-~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      ...+  ..+++..+.                      -+  . -+|+|.+|+-+|+|++-+.+.+..
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence            2100  111111111                      11  1 248999999999998766555443

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.83  E-value=1.3e-08  Score=71.60  Aligned_cols=56  Identities=21%  Similarity=0.250  Sum_probs=40.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG   68 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   68 (198)
                      ..++++++|.||+|||||+|+|++.... ...+..|.+.....+..+.   .+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~-~~~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRAC-NVGATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccc-eecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            3489999999999999999999986542 2234445555444444432   477999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.81  E-value=5.9e-08  Score=72.42  Aligned_cols=107  Identities=17%  Similarity=0.089  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC--HH
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP--TE  136 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~  136 (198)
                      +.+.|++|.|--....   ....-+|.+++|.-..-.+.++.++.=   +.+..     =++++||.|......-.  ..
T Consensus       144 ~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~G---imEia-----Di~vINKaD~~~A~~a~r~l~  212 (323)
T COG1703         144 YDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAG---IMEIA-----DIIVINKADRKGAEKAARELR  212 (323)
T ss_pred             CCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhh---hhhhh-----heeeEeccChhhHHHHHHHHH
Confidence            5677888886432221   233448888888765555555444322   22221     25777999954321100  11


Q ss_pred             HHHHHH----HH--cCCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          137 EGEQFS----QE--NGMFYIETSAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       137 ~~~~~~----~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      .+..+.    ..  +.-+++.+||.+|+|++++++.+.++......
T Consensus       213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~  258 (323)
T COG1703         213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE  258 (323)
T ss_pred             HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence            111111    11  23379999999999999999999887655443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.81  E-value=2.6e-08  Score=78.11  Aligned_cols=95  Identities=28%  Similarity=0.283  Sum_probs=68.6

Q ss_pred             chhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH----HHHH
Q 048059           69 QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ----FSQE  144 (198)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~----~~~~  144 (198)
                      .+.|..+...+...++++++|+|+.+..     ..|...+.+.. ...|+++|+||+|+... ....+...+    +++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            4567778888889999999999987654     22444444432 25689999999998542 333344443    3556


Q ss_pred             cCC---eEEEEccCCCCCHHHHHHHHHHH
Q 048059          145 NGM---FYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       145 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      .++   .++.+||+++.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=3.5e-08  Score=75.65  Aligned_cols=156  Identities=13%  Similarity=0.198  Sum_probs=96.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------------CCCcceeEEEEEEEeCCc------
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-----------------------EPTIGAAFFTQILSLSEA------   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~------   57 (198)
                      .-..+++.++|...+|||||+-.|+.+..+...                       ..++|++.....+++...      
T Consensus       164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi  243 (591)
T KOG1143|consen  164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI  243 (591)
T ss_pred             cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence            445799999999999999999888876544322                       122333333333333221      


Q ss_pred             ----EEEEEEEeCCCchhhcccchhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           58 ----TVKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        58 ----~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                          ..-++++|.+|+.+|....-+.+.  -.|...+|++++..-.+..-+. +-.+.   .-+.|+.++++|.|+....
T Consensus       244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~---AL~iPfFvlvtK~Dl~~~~  319 (591)
T KOG1143|consen  244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIA---ALNIPFFVLVTKMDLVDRQ  319 (591)
T ss_pred             HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHH---HhCCCeEEEEEeeccccch
Confidence                234789999999999876555543  3688888888876554433222 11221   2567999999999985431


Q ss_pred             CC------------------------CHHHH----HHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059          132 EV------------------------PTEEG----EQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus       132 ~~------------------------~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      .+                        +.+++    ++.+..+-.|+|.+|+-+|+|++-+-..
T Consensus       320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence            11                        11222    2222222347999999999998755443

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=7.9e-08  Score=73.61  Aligned_cols=117  Identities=16%  Similarity=0.312  Sum_probs=77.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEEEeCCc-------------------------------
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQE-PTIGAAFFTQILSLSEA-------------------------------   57 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------------------------   57 (198)
                      ..=|+++|+-..||||+|+.|+.+.++.... |.+.+++....++.+..                               
T Consensus        58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            4568999999999999999999988875433 33334444444332211                               


Q ss_pred             --------EEEEEEEeCCCch-----------hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE
Q 048059           58 --------TVKFDIWDTAGQE-----------RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM  118 (198)
Q Consensus        58 --------~~~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~  118 (198)
                              --.++++||||.-           .|....+-+...+|.+|++||....+--++....+..++.+..   -+
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed---ki  214 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED---KI  214 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc---ee
Confidence                    0247899999952           1122233456789999999998655544555566666655432   46


Q ss_pred             EEEEeCCCCCC
Q 048059          119 ALAANKSDLDS  129 (198)
Q Consensus       119 iiv~nK~Dl~~  129 (198)
                      -||.||+|..+
T Consensus       215 RVVLNKADqVd  225 (532)
T KOG1954|consen  215 RVVLNKADQVD  225 (532)
T ss_pred             EEEeccccccC
Confidence            67779999754

>cd01856 YlqF YlqF

Probab=98.73  E-value=3.7e-08  Score=69.39  Aligned_cols=57  Identities=19%  Similarity=0.179  Sum_probs=40.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ..++++++|.+|+|||||++++.+..+. ......+.+.....+.++   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            3579999999999999999999986653 223334455444444443   34779999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01855 YqeH YqeH

Probab=98.72  E-value=3.3e-08  Score=70.79  Aligned_cols=57  Identities=19%  Similarity=0.307  Sum_probs=40.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYD-------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ..++.++|.+|+|||||+|+|.+.....       ......|++.....+.++.   .+.++||||.
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence            3689999999999999999999754311       2223345565555555543   4679999993

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.68  E-value=8.1e-08  Score=66.56  Aligned_cols=57  Identities=21%  Similarity=0.278  Sum_probs=40.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ...+++++|.+|+|||||++++.+.. .....++.+.+.....+..+.   .+.+|||||.
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            35789999999999999999999654 334455666554333333332   5789999983

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=3.4e-07  Score=73.83  Aligned_cols=139  Identities=13%  Similarity=0.106  Sum_probs=82.7

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ..++.+=++|+||||.||||||+.|.............|    +. ..+.++...+++..+|.+  ...+.. ...-+|.
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D--l~~miD-vaKIaDL  136 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD--LHQMID-VAKIADL  136 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH--HHHHHh-HHHhhhe
Confidence            445678888999999999999998775321111111111    12 235677788999999943  222222 3345899


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH-HHHH------cCCeEEEEccCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ-FSQE------NGMFYIETSAKT  156 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~------~~~~~~~~Sa~~  156 (198)
                      +++++|.+-.-.++.++ +++.+..+..+  .++-|+|+.|+-..... ...++. +...      .|+.+|.+|.-.
T Consensus       137 VlLlIdgnfGfEMETmE-FLnil~~HGmP--rvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         137 VLLLIDGNFGFEMETME-FLNILISHGMP--RVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eEEEeccccCceehHHH-HHHHHhhcCCC--ceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            99999987554444433 44445554332  46778899998543322 222222 2221      277888888654

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.67  E-value=6.6e-08  Score=71.32  Aligned_cols=153  Identities=16%  Similarity=0.115  Sum_probs=89.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CcceeEEEEEEEeCCcEEEEEEEeCCCc----------hhhccc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP-TIGAAFFTQILSLSEATVKFDIWDTAGQ----------ERYHSL   75 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~   75 (198)
                      .....+++++|.+++|||+|++.++..+....... ..|.+.....+.++.   .+.++|.||.          ..+..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            45568999999999999999999887554433333 556555555554443   5669999992          233334


Q ss_pred             chhhhcC---CCeEEEEEECCChhh-HH-HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC----CCHHHHHH------
Q 048059           76 APMYYRG---AAAAVVVYDISNMDT-FN-RANKLVQELQRQGNQIVVMALAANKSDLDSQRE----VPTEEGEQ------  140 (198)
Q Consensus        76 ~~~~~~~---~d~~i~v~d~~~~~s-~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~------  140 (198)
                      ...|+.+   ---+++++|++-+-. .+ ....|+.+      .++|+.+|.||+|......    -....+..      
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~  283 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI  283 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence            4445432   233345556543221 11 11234332      5689999999999742110    00011111      


Q ss_pred             -HHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059          141 -FSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus       141 -~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                       .+.....+...+|+.++.|+++++-.|.
T Consensus       284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIA  312 (320)
T ss_pred             ccceeccCCceeeecccccCceeeeeehh
Confidence             1111234566799999999988775544

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.67  E-value=1.1e-07  Score=72.55  Aligned_cols=59  Identities=19%  Similarity=0.249  Sum_probs=42.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE   70 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   70 (198)
                      ...++++++|.||+|||||+|+|.+.... ...+..|.+.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            34689999999999999999999986542 2234455555444444443   46799999973

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.67  E-value=8e-08  Score=72.81  Aligned_cols=57  Identities=21%  Similarity=0.265  Sum_probs=41.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ..++++++|.||+|||||+|+|.+...... ....|.+.....+.+..   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            468999999999999999999997653322 33445555455555433   4679999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.64  E-value=7.3e-08  Score=74.40  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=45.9

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE   70 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   70 (198)
                      ...+++.|+|-||+|||||||+|.+... ....+.+|.+.....+.+...   +.++||||.-
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            3458899999999999999999998664 444455577766777766654   6799999963

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.64  E-value=4.1e-08  Score=67.71  Aligned_cols=59  Identities=24%  Similarity=0.323  Sum_probs=33.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYD------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      -.++++|++|||||||+|.|.......      .......++.....+.+....   .++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence            358899999999999999999753211      111111122223344454444   38999997543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01858 NGP_1 NGP-1

Probab=98.63  E-value=1.5e-07  Score=65.37  Aligned_cols=90  Identities=13%  Similarity=0.074  Sum_probs=56.7

Q ss_pred             hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059           79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ  158 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (198)
                      .+.++|++++|+|+.++..- ....+...+.. ...+.|+++|+||+|+..... .......+.+.+....+.+||+.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCccc-cCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence            46789999999999886322 11222222322 234579999999999853221 1122223322223335779999999


Q ss_pred             CHHHHHHHHHHHH
Q 048059          159 NINELFYEIAKRL  171 (198)
Q Consensus       159 ~i~~~~~~l~~~~  171 (198)
                      |++++++.+...+
T Consensus        82 ~~~~L~~~l~~~~   94 (157)
T cd01858          82 GKGSLIQLLRQFS   94 (157)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=4.6e-08  Score=76.01  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=97.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCCC--------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKG--------QFYDQQ--------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      +-.+|.|+..-.+||||.-.+++.-        ..+...        ...-|.+.....++++++.+++.++||||+-.|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            3468999999999999999987741        111110        112356777888899999999999999999999


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF  148 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (198)
                      +-..+.+++-.|+++.|||.+..-.-+.+.-|.+.    ..-+.|-...+||.|.....-  .......-.++++.
T Consensus       116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ak  185 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGAK  185 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCCc
Confidence            99999999999999999999866555555556543    345678888899999754321  22233444456664

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.62  E-value=3.6e-07  Score=81.58  Aligned_cols=111  Identities=21%  Similarity=0.206  Sum_probs=69.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCC----C--CCcceeEEEEEEEeCCcEEEEEEEeCCCch--------hhcccchh
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQFYDQQ----E--PTIGAAFFTQILSLSEATVKFDIWDTAGQE--------RYHSLAPM   78 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~   78 (198)
                      .+|+|++|+||||++..- +..++-..    .  ...+.+. ...+++.+.-+   ++||+|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~av---liDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAV---LIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEE---EEcCCCccccCCCcccccHHHHHH
Confidence            489999999999999765 33332110    1  1111111 23344554444   99999941        12234555


Q ss_pred             hh---------cCCCeEEEEEECCChh-----hH----HHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           79 YY---------RGAAAAVVVYDISNMD-----TF----NRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        79 ~~---------~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      ++         +..|++|+++|+.+--     ..    ..+...++.+....+-.+|++|++||+|+.
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            54         3489999999976432     11    233445566666667789999999999975

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.61  E-value=2.2e-07  Score=64.32  Aligned_cols=85  Identities=14%  Similarity=0.043  Sum_probs=55.1

Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      |++++|+|+.++.+....  ++.. ......+.|+++|+||+|+...... .+....+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            689999999887654322  2221 1112346799999999998432111 11112333334567899999999999999


Q ss_pred             HHHHHHHHH
Q 048059          164 FYEIAKRLA  172 (198)
Q Consensus       164 ~~~l~~~~~  172 (198)
                      ++.+.+...
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            999877543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.61  E-value=1.3e-07  Score=68.09  Aligned_cols=121  Identities=16%  Similarity=0.203  Sum_probs=82.1

Q ss_pred             CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh----------HHHHHHHHHHHHHh-CCCCceEEEEEeC
Q 048059           56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT----------FNRANKLVQELQRQ-GNQIVVMALAANK  124 (198)
Q Consensus        56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~-~~~~~p~iiv~nK  124 (198)
                      -..+.+.++|.+|+..-+..|-+++.+.-.++|++.++..+.          +++-..++..+... ...+.++++..||
T Consensus       196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK  275 (359)
T KOG0085|consen  196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK  275 (359)
T ss_pred             hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence            344567799999999888999999999988888877654332          22222233333332 3467889999999


Q ss_pred             CCCCCC----------------CCCCHHHHHHHHHHc----C------CeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          125 SDLDSQ----------------REVPTEEGEQFSQEN----G------MFYIETSAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       125 ~Dl~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      .|+.++                ...+.+.+++|..+.    +      +.-..+.|.+.+|+.-+|..+...+.+.+-
T Consensus       276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            998422                234455556665542    1      224567888999999999998888776653

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.58  E-value=1.5e-06  Score=63.80  Aligned_cols=117  Identities=12%  Similarity=0.069  Sum_probs=64.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCC---CCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcc------cc
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKG--QFYDQQE---PTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHS------LA   76 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~------~~   76 (198)
                      +-.-|.|+|++++|||+|+|.|++.  .+.....   -|.|.-  .+..... +....+.++||+|......      ..
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~--~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIW--MWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceE--EEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            4467899999999999999999987  4432221   222211  1111111 1346789999999753322      11


Q ss_pred             hhhhcC--CCeEEEEEECCCh-hhHHHHHHHHHHH---------HHhCCCCceEEEEEeCCCC
Q 048059           77 PMYYRG--AAAAVVVYDISNM-DTFNRANKLVQEL---------QRQGNQIVVMALAANKSDL  127 (198)
Q Consensus        77 ~~~~~~--~d~~i~v~d~~~~-~s~~~~~~~~~~~---------~~~~~~~~p~iiv~nK~Dl  127 (198)
                      -..+.-  ++.+|+..+.... ..++.+....+..         .........+++++...++
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~  146 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL  146 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence            222333  7888887766433 3334433333211         1111233446677766665

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.56  E-value=2.8e-07  Score=63.85  Aligned_cols=57  Identities=19%  Similarity=0.198  Sum_probs=37.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ...+++++|.+|+|||||+|.|++..... .....+.+.......++   ..+.++||||.
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence            45889999999999999999999865321 11222333223333333   24779999983

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=7.1e-07  Score=67.76  Aligned_cols=147  Identities=18%  Similarity=0.170  Sum_probs=92.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhC----------CCCCCC----CCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKG----------QFYDQQ----EPTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      ...+.+||.-+|...-|||||-.+++.-          .|+.-.    ...-|.++...++.+.-....+-=+|+||+..
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            3566899999999999999998877631          111100    11224444445555544445566789999988


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC---CCHHHHHHHHHHcC--
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE---VPTEEGEQFSQENG--  146 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~--  146 (198)
                      |-..--.-..+.|+.|+|+.++|.. +.+..+.+...+...  -..+++.+||.|+..+.+   ..+-+++++...++  
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            7655555567899999999998853 455544443333332  246889999999874332   22334455555554  


Q ss_pred             ---CeEEEEccC
Q 048059          147 ---MFYIETSAK  155 (198)
Q Consensus       147 ---~~~~~~Sa~  155 (198)
                         +|++.-||+
T Consensus       207 Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  207 GDNTPVIRGSAL  218 (449)
T ss_pred             CCCCCeeecchh
Confidence               567766654

>TIGR00092 GTP-binding protein YchF

Probab=98.52  E-value=5.4e-07  Score=70.18  Aligned_cols=81  Identities=16%  Similarity=0.034  Sum_probs=52.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCC--cceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPT--IGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY   72 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~   72 (198)
                      +++.|+|.|++|||||++.|++... .....|.  +...  ...+.+.+.               ...+.+.|.||...-
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~--~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPN--AGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCc--eeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            7899999999999999999998765 3332222  2222  222223221               235789999986321


Q ss_pred             ----ccc---chhhhcCCCeEEEEEECC
Q 048059           73 ----HSL---APMYYRGAAAAVVVYDIS   93 (198)
Q Consensus        73 ----~~~---~~~~~~~~d~~i~v~d~~   93 (198)
                          ..+   .-..++++|++++|++..
T Consensus        81 As~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        81 ASKGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence                122   223468899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.51  E-value=8e-07  Score=68.50  Aligned_cols=142  Identities=15%  Similarity=0.136  Sum_probs=78.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------CC--------------CcceeEEEEEEEe-------------C
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-------EP--------------TIGAAFFTQILSL-------------S   55 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~-------~~--------------~~~~~~~~~~~~~-------------~   55 (198)
                      .--|+++|++|+||||++..|.........       +.              ..+..+.......             .
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999887642111000       00              0011111110000             1


Q ss_pred             CcEEEEEEEeCCCchhhccc----chhh--------hcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEE
Q 048059           56 EATVKFDIWDTAGQERYHSL----APMY--------YRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAA  122 (198)
Q Consensus        56 ~~~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~  122 (198)
                      ...+.+.++||+|.......    ...+        -...+..++|.|++... .+.++..+.    +..   .+--+|.
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~----~~~---~~~giIl  266 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH----EAV---GLTGIIL  266 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH----hhC---CCCEEEE
Confidence            13457889999996432211    1111        12467889999987432 233322222    211   2446788


Q ss_pred             eCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059          123 NKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus       123 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      ||.|....-    -.+...+...++|+..++  +|++++++-
T Consensus       267 TKlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        267 TKLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             ECCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            999954322    234555566799998888  777776654

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=4.5e-08  Score=73.13  Aligned_cols=166  Identities=17%  Similarity=0.168  Sum_probs=99.6

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCC--CCcceeEEEE-EEEeC------------------------
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQ---FYDQQE--PTIGAAFFTQ-ILSLS------------------------   55 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~---~~~~~~--~~~~~~~~~~-~~~~~------------------------   55 (198)
                      .++-.++|.-+|...-||||+++++.+-.   |..+..  -|+-..+... .+..+                        
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            45668999999999999999999887521   111111  1110000000 00000                        


Q ss_pred             ----Cc----EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCC----hhhHHHHHHHHHHHHHhCCCCceEEEEEe
Q 048059           56 ----EA----TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN----MDTFNRANKLVQELQRQGNQIVVMALAAN  123 (198)
Q Consensus        56 ----~~----~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~iiv~n  123 (198)
                          ..    -..+.|+|+||++-.....-.-..-.|++++++..+.    |++.+.+    ..+.-.  +-..++++-|
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM--~LkhiiilQN  187 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIM--KLKHIIILQN  187 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHh--hhceEEEEec
Confidence                00    1247799999998654332222334677777776643    2222322    222111  2247999999


Q ss_pred             CCCCCCCCC--CCHHHHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          124 KSDLDSQRE--VPTEEGEQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       124 K~Dl~~~~~--~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      |.|+..+.+  ...+.++.|...-   ++|++++||.-+.|++-+.++|+.++....++
T Consensus       188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd  246 (466)
T KOG0466|consen  188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD  246 (466)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence            999964432  2234555565543   67999999999999999999999988765544

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=7.8e-07  Score=73.74  Aligned_cols=117  Identities=22%  Similarity=0.219  Sum_probs=80.7

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCC------------CC--CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQ------------FY--DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      +...-.+|+++.+..-|||||+..|....            |.  .+...+-|.+...-.+..-.+++.+.++|+||+-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            34456899999999999999999887421            11  11223345555555555555778899999999999


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSD  126 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  126 (198)
                      |.+......+-+|++++++|+...-..+...-+.+.+.    .+..+++|+||+|
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkid  135 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhh
Confidence            99998888899999999999875443333222222222    2334667789999

>cd01856 YlqF YlqF

Probab=98.47  E-value=4.4e-07  Score=63.89  Aligned_cols=94  Identities=16%  Similarity=0.098  Sum_probs=61.4

Q ss_pred             hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 048059           71 RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYI  150 (198)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                      +........+.++|.+++|+|++++...... .+...+     .+.|+++|+||+|+.....  .....++....+..++
T Consensus         8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi   79 (171)
T cd01856           8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL   79 (171)
T ss_pred             HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence            3344556678899999999999876432221 122211     2358899999999853211  1111122233345689


Q ss_pred             EEccCCCCCHHHHHHHHHHHHH
Q 048059          151 ETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      .+||+++.|++++.+.+...+.
T Consensus        80 ~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          80 FVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EEECCCcccHHHHHHHHHHHHH
Confidence            9999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.46  E-value=6.5e-07  Score=60.99  Aligned_cols=76  Identities=18%  Similarity=0.183  Sum_probs=51.4

Q ss_pred             hhhcCCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC
Q 048059           78 MYYRGAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK  155 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (198)
                      ..+.++|++++|+|+.++.+..  .+..|+..   . ..+.|+++|+||+|+..+..  .....++....+..++++||+
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence            4578899999999998876543  33444332   2 24579999999999853221  223344455567789999999


Q ss_pred             CCCC
Q 048059          156 TAQN  159 (198)
Q Consensus       156 ~~~~  159 (198)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            8753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.45  E-value=5.7e-07  Score=70.09  Aligned_cols=57  Identities=16%  Similarity=0.277  Sum_probs=35.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCC-CCCCC-----cceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQFYD-QQEPT-----IGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      ++|+|.+|||||||+|+|++..... ...+.     -.++.....+.+.+..   .|+||||...+
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~  270 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF  270 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence            7899999999999999999754321 11111     1122223334444333   39999997653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.44  E-value=3.2e-05  Score=52.92  Aligned_cols=145  Identities=19%  Similarity=0.217  Sum_probs=77.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCC-Cch--------------hh--
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA-GQE--------------RY--   72 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~~--------------~~--   72 (198)
                      .+||+|-|+|||||||++.++...-....+ ...  .+....+.-++...-|.++|.. |..              +|  
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V   81 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV   81 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence            589999999999999999888753211111 111  2334455566667777777776 321              11  


Q ss_pred             -----c----ccchhhhcCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH
Q 048059           73 -----H----SLAPMYYRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS  142 (198)
Q Consensus        73 -----~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  142 (198)
                           .    ......+..||++  ++|--.+  ++.. ..+.+.+........|++..+.+.+-  .     -..+.+.
T Consensus        82 ~v~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr--~-----P~v~~ik  150 (179)
T COG1618          82 NVEGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR--H-----PLVQRIK  150 (179)
T ss_pred             eHHHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC--C-----hHHHHhh
Confidence                 0    1112223456744  4454333  2222 23444444444456677777765552  1     1223333


Q ss_pred             HHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          143 QENGMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       143 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      . .+.-++.   .+-+|-+.+++.+++.+-
T Consensus       151 ~-~~~v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         151 K-LGGVYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             h-cCCEEEE---EccchhhHHHHHHHHHhc
Confidence            3 3333333   455556688888777654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.43  E-value=1.1e-06  Score=66.62  Aligned_cols=102  Identities=14%  Similarity=0.093  Sum_probs=65.5

Q ss_pred             CCCch-hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 048059           66 TAGQE-RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE  144 (198)
Q Consensus        66 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  144 (198)
                      .|||. +........+.++|++++|+|+.++.+.+.. .+.+.+     .+.|+++|+||+|+.....  .+...++...
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence            35552 2233455678899999999999876543221 111112     2468999999999853211  1111122233


Q ss_pred             cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          145 NGMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      .+.+++.+||+++.|++++.+.+.+.+.+..
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~  106 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKLLKEKN  106 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence            4567899999999999999999888775543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=4.9e-06  Score=60.83  Aligned_cols=158  Identities=15%  Similarity=0.175  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEE--EEEEEeCCCchhhcccchhhhcCCCeE
Q 048059           11 AKLVLLGDMGT--GKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATV--KFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus        11 ~~i~v~G~~~s--GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      .-++|.|.+|+  ||.+|+.+|....+.....+...+.+..+++  +.+.+  .+.+.-.+--+.+.-..-.......++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwti--d~kyysadi~lcishicde~~lpn~~~a~pl~a~   82 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTI--DNKYYSADINLCISHICDEKFLPNAEIAEPLQAF   82 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEe--cceeeecceeEEeecccchhccCCcccccceeeE
Confidence            35789999998  9999999998877665554444444444433  33332  122221221122221112223446788


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC------------------------------------
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ------------------------------------  130 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------------------------------  130 (198)
                      +++||++....+..+..|+..-......  ..+.++||.|....                                    
T Consensus        83 vmvfdlse~s~l~alqdwl~htdinsfd--illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs  160 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQDWLPHTDINSFD--ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS  160 (418)
T ss_pred             EEEEeccchhhhHHHHhhccccccccch--hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence            9999999999999999997643222111  34677888885210                                    


Q ss_pred             ------C--CCCHHHHHHHHHHcCCeEEEEccCCC------------CCHHHHHHHHHHHHH
Q 048059          131 ------R--EVPTEEGEQFSQENGMFYIETSAKTA------------QNINELFYEIAKRLA  172 (198)
Q Consensus       131 ------~--~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~~~~~l~~~~~  172 (198)
                            .  -.......+|+.++++.+++.++...            .|+..+|..|-..+-
T Consensus       161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence                  0  01123457888889999999888432            479999988876543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.42  E-value=4.1e-06  Score=63.30  Aligned_cols=95  Identities=13%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             EEEEEEEeCCCchhhcccch----h---hh-----cCCCeEEEEEECCCh-hhHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059           58 TVKFDIWDTAGQERYHSLAP----M---YY-----RGAAAAVVVYDISNM-DTFNRANKLVQELQRQGNQIVVMALAANK  124 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  124 (198)
                      .+.+.|+||+|........-    .   ..     ...|.+++|+|++.. +.+..+.    .+.+..+   +--+|.||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~----~f~~~~~---~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAK----VFNEAVG---LTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHH----HHHhhCC---CCEEEEEc
Confidence            46788999999753222111    1   11     238999999999643 2233332    2222221   45678899


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059          125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus       125 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      .|......    .+.......++|+.+++  +|++++++..
T Consensus       227 lDe~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       227 LDGTAKGG----IILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             cCCCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            99643332    23444556688888887  7777766543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.41  E-value=4.2e-06  Score=61.55  Aligned_cols=119  Identities=18%  Similarity=0.245  Sum_probs=77.2

Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh-------hHHHHHHHHHHHH----HhCCCCceEEEEEeCC
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD-------TFNRANKLVQELQ----RQGNQIVVMALAANKS  125 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~----~~~~~~~p~iiv~nK~  125 (198)
                      ..+.++.+|.+|+..-+..|-.++....++|||...+...       +-..++..+..+.    ++.-....+++..||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            3456889999999999999999999999999999876432       1223333333332    2333456789999999


Q ss_pred             CCCCC----------------------------CCC--CHHHHHHHHHH-------------cCCeEEEEccCCCCCHHH
Q 048059          126 DLDSQ----------------------------REV--PTEEGEQFSQE-------------NGMFYIETSAKTAQNINE  162 (198)
Q Consensus       126 Dl~~~----------------------------~~~--~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~  162 (198)
                      |+..+                            ...  ....++.+.+.             .-|.+.++.|.+.+++..
T Consensus       280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr  359 (379)
T KOG0099|consen  280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  359 (379)
T ss_pred             HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence            97210                            001  11122222221             124567788999999999


Q ss_pred             HHHHHHHHHHhhC
Q 048059          163 LFYEIAKRLARVS  175 (198)
Q Consensus       163 ~~~~l~~~~~~~~  175 (198)
                      +|+.....+...+
T Consensus       360 VFnDcrdiIqr~h  372 (379)
T KOG0099|consen  360 VFNDCRDIIQRMH  372 (379)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999777666554

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.40  E-value=2.5e-06  Score=65.81  Aligned_cols=154  Identities=15%  Similarity=0.196  Sum_probs=80.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC------------------CCCcceeEE-----EEEE------------
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ------------------EPTIGAAFF-----TQIL------------   52 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~------------------~~~~~~~~~-----~~~~------------   52 (198)
                      -..++|.++|+..+|||||+-.|+.+..+...                  .+..|.++.     ...+            
T Consensus       131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW  210 (641)
T KOG0463|consen  131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW  210 (641)
T ss_pred             ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence            44799999999999999999877765433211                  111111111     1111            


Q ss_pred             -EeC-CcEEEEEEEeCCCchhhcccchhhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           53 -SLS-EATVKFDIWDTAGQERYHSLAPMYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        53 -~~~-~~~~~~~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                       .+. +...-++|+|.+|+++|...+-.-.  .-.|...+++-++-.- .--..+.+..   ...-+.|+.+|.||+|+.
T Consensus       211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgL---ALaL~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGL---ALALHVPVFVVVTKIDMC  286 (641)
T ss_pred             eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhh---hhhhcCcEEEEEEeeccC
Confidence             111 1123478999999998865332221  2245555555443211 0000111110   112456788888888864


Q ss_pred             CCCCCCHHHHH-----------------------------HHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059          129 SQREVPTEEGE-----------------------------QFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus       129 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      .... ..+..+                             .|..+.-|++|.+|--+|+|+.-+...
T Consensus       287 PANi-LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF  352 (641)
T KOG0463|consen  287 PANI-LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF  352 (641)
T ss_pred             cHHH-HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence            3221 111111                             112223378999999999998755433

>PRK13796 GTPase YqeH; Provisional

Probab=98.39  E-value=6.4e-07  Score=70.46  Aligned_cols=58  Identities=21%  Similarity=0.221  Sum_probs=39.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC----CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQF----YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE   70 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   70 (198)
                      ..++.++|.+|||||||+|+|+....    .....+..|++.....+.+++.   ..++||||..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            35799999999999999999985431    1112344455555555555443   3599999973

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.39  E-value=7e-07  Score=67.26  Aligned_cols=58  Identities=22%  Similarity=0.266  Sum_probs=37.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQF------YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      -.+++|++|+|||||+|+|.....      .........++.....+.+.+...   ++||||...+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~  229 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSL  229 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCcc
Confidence            568899999999999999986321      111112222333455566654444   8999997653

>PRK12289 GTPase RsgA; Reviewed

Probab=98.38  E-value=7.6e-07  Score=69.43  Aligned_cols=56  Identities=25%  Similarity=0.300  Sum_probs=34.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcc-------eeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIG-------AAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      .++|+|++|||||||+|+|++...... ....+       ++.....+.+.+..   .|+||||...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t-~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRV-GKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcccccc-ccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            379999999999999999996542211 11111       22223344443333   4999999743

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.35  E-value=1.4e-06  Score=68.53  Aligned_cols=57  Identities=21%  Similarity=0.301  Sum_probs=38.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFY----DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE   70 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   70 (198)
                      .++.++|.+|||||||+|+|++....    ....+..|++.....+.+++.   +.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence            58999999999999999999974321    122334455554555544332   4699999964

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.35  E-value=8.7e-07  Score=68.61  Aligned_cols=94  Identities=14%  Similarity=0.090  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCchhhcc----cchhh--hcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      +.+.|+||+|......    ....+  ..+.|.+++|.|++... ..+++..+.    ...   .+-.+|+||.|....-
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~----~~~---~~~giIlTKlD~~~~~  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN----EAV---GIDGVILTKVDADAKG  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH----hcC---CCCEEEEeeecCCCCc
Confidence            4688999999743221    11111  13578899999986543 223332222    211   1345778999974332


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059          132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      .    .+...+...+.|+..++  +|++++++..
T Consensus       296 G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        296 G----AALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             c----HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence            2    23444455688888887  7888877654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.33  E-value=4.7e-05  Score=59.97  Aligned_cols=154  Identities=17%  Similarity=0.231  Sum_probs=88.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC--------------CCCCCCCccee-------EE---EEEEEe-CCcEEEEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQF--------------YDQQEPTIGAA-------FF---TQILSL-SEATVKFDIW   64 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~--------------~~~~~~~~~~~-------~~---~~~~~~-~~~~~~~~l~   64 (198)
                      .+=|.|+||..+|||||++++.....              +.-+.+..|.+       |-   -..+.+ ++..+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            46689999999999999999864211              00011111111       11   112333 4567889999


Q ss_pred             eCCCch--------------hhcccch---------------hhhcC--CCeEEEEEECC----ChhhHHHH-HHHHHHH
Q 048059           65 DTAGQE--------------RYHSLAP---------------MYYRG--AAAAVVVYDIS----NMDTFNRA-NKLVQEL  108 (198)
Q Consensus        65 D~~g~~--------------~~~~~~~---------------~~~~~--~d~~i~v~d~~----~~~s~~~~-~~~~~~~  108 (198)
                      |+.|.-              ...+-|.               ..+..  .-++++.-|.+    .++.+..+ ++..+.+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            998740              0011111               11222  33444444433    13344333 4555555


Q ss_pred             HHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC--CCCHHHHHHHHH
Q 048059          109 QRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT--AQNINELFYEIA  168 (198)
Q Consensus       109 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~  168 (198)
                      ..   -++|++|+.|-.+-  ....+.+...++..+++++++.+++..  .+++..++..++
T Consensus       177 k~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  177 KE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence            55   35699999999984  334456778888889999998888754  445555555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK13796 GTPase YqeH; Provisional

Probab=98.33  E-value=4.6e-06  Score=65.70  Aligned_cols=83  Identities=25%  Similarity=0.299  Sum_probs=56.4

Q ss_pred             cCCC-eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH----HHHcCC---eEEEE
Q 048059           81 RGAA-AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF----SQENGM---FYIET  152 (198)
Q Consensus        81 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~~~~  152 (198)
                      ..++ .+++|+|+.|..     ..|...+.+.. .+.|+++|+||+|+.. +....+....+    ++..++   .++.+
T Consensus        67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~~v  139 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVVLI  139 (365)
T ss_pred             cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence            4444 889999987643     22444444432 2568999999999954 23333344333    455565   58999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 048059          153 SAKTAQNINELFYEIAKR  170 (198)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~  170 (198)
                      ||+++.|++++++.|.+.
T Consensus       140 SAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        140 SAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            999999999999998664

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.31  E-value=1.8e-06  Score=64.32  Aligned_cols=57  Identities=19%  Similarity=0.126  Sum_probs=35.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCC------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQ------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      -.++++|++|+|||||+|+|.+......      ......++.....+.+.+ .   .++||||...
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~  183 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNE  183 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCccc
Confidence            4688999999999999999997532211      111111222233344432 2   5999999754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK01889 GTPase RsgA; Reviewed

Probab=98.30  E-value=4e-06  Score=65.79  Aligned_cols=83  Identities=12%  Similarity=0.108  Sum_probs=56.8

Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-ENGMFYIETSAKTAQ  158 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  158 (198)
                      ..|+|.+++|+++..+-....++.++..+..   .+.+.+||+||+|+....   .+....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            5789999999999644444455666555444   334668899999996431   111222222 346789999999999


Q ss_pred             CHHHHHHHHH
Q 048059          159 NINELFYEIA  168 (198)
Q Consensus       159 ~i~~~~~~l~  168 (198)
                      |++++..+|.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888863

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.28  E-value=3e-06  Score=64.59  Aligned_cols=101  Identities=17%  Similarity=0.125  Sum_probs=65.5

Q ss_pred             CCCch-hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 048059           66 TAGQE-RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE  144 (198)
Q Consensus        66 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  144 (198)
                      .|||. +-.......+..+|++++|+|+.++.+.+.. .+...+     .+.|+++|.||+|+.....  .+...++...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~-~l~~~~-----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP-MIDKII-----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh-hHHHHh-----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            46653 2233455677899999999999876543221 111111     2468999999999853211  1112222234


Q ss_pred             cCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059          145 NGMFYIETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      .+.+++.+||+++.|++++.+.+...+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            467789999999999999999988876554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.27  E-value=1e-05  Score=64.47  Aligned_cols=65  Identities=15%  Similarity=0.038  Sum_probs=37.2

Q ss_pred             EEEEEEEeCCCchhhcccc----hhh--hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLA----PMY--YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      .+.+.|+||+|........    ..+  ..+.+-++||.|++..+.-   ......+....   .+-.+|.||.|..
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~---~~~g~IlTKlD~~  252 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV---DVGSVIITKLDGH  252 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc---CCcEEEEECccCC
Confidence            4678999999964322111    111  2357889999998654322   11222232211   2556888999964

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.26  E-value=4.7e-06  Score=63.36  Aligned_cols=85  Identities=19%  Similarity=0.139  Sum_probs=54.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEe-------------CCcEEEEEEEeCCCch---
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSL-------------SEATVKFDIWDTAGQE---   70 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-------------~~~~~~~~l~D~~g~~---   70 (198)
                      ..+++.|+|.|+||||||+|.|+.........|  |+..+.....+..             ......++++|++|.-   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            468999999999999999999998766555444  2332222221110             1123578999998752   


Q ss_pred             -hhcccchhh---hcCCCeEEEEEECC
Q 048059           71 -RYHSLAPMY---YRGAAAAVVVYDIS   93 (198)
Q Consensus        71 -~~~~~~~~~---~~~~d~~i~v~d~~   93 (198)
                       .-..+-.+|   ++.+|+++-|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence             222333334   46789999888753

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=9.7e-06  Score=71.44  Aligned_cols=111  Identities=21%  Similarity=0.183  Sum_probs=64.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCC-CC-----CCCCcceeEEEEEEEeCCcEEEEEEEeCCCch--------hhcccchh
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQFY-DQ-----QEPTIGAAFFTQILSLSEATVKFDIWDTAGQE--------RYHSLAPM   78 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~   78 (198)
                      -+|+|++|+||||++.. .+..++ .+     .....|+  ......+.+..   .++||+|.-        .-...|..
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT--~~cdwwf~dea---VlIDtaGry~~q~s~~~~~~~~W~~  201 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGT--RNCDWWFTDEA---VLIDTAGRYITQDSADEVDRAEWLG  201 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCC--cccCcccccce---EEEcCCcceecccCcchhhHHHHHH
Confidence            37899999999999853 222221 00     1111121  12223444433   489999841        22334554


Q ss_pred             hh---------cCCCeEEEEEECCChhh-----H----HHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           79 YY---------RGAAAAVVVYDISNMDT-----F----NRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        79 ~~---------~~~d~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      ++         +..||+|+..|+.+--+     -    ..+..-++.+...-.-..|++|++||.|+..
T Consensus       202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            43         45899999999764211     1    1223334455555557799999999999854

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.19  E-value=1.1e-05  Score=56.10  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      +++.|..|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            579999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.18  E-value=5.3e-06  Score=63.28  Aligned_cols=59  Identities=19%  Similarity=0.246  Sum_probs=36.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCC-C-----CCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQ-E-----PTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      -.++++|++|+|||||+|.|++....... .     ....++.....+......   .++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence            56899999999999999999975432211 1     111122223334443222   48999997653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=1.2e-05  Score=59.71  Aligned_cols=63  Identities=24%  Similarity=0.325  Sum_probs=45.7

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQE----PTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      .-..++|+.+|.+|.|||||+..|.+..+.....    |............-.+..++++++||.|.
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf  105 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF  105 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence            3457999999999999999999999877664433    22222222333445677889999999984

>PRK13695 putative NTPase; Provisional

Probab=98.16  E-value=8.5e-05  Score=52.40  Aligned_cols=48  Identities=19%  Similarity=0.176  Sum_probs=31.0

Q ss_pred             CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          114 QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       114 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ...|++++.+|...       .....++....+..++++   +.+|-+++.+.+++.+
T Consensus       125 ~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        125 SEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL  172 (174)
T ss_pred             CCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence            45688888887532       234555666677778777   4455567777777654

>PRK00098 GTPase RsgA; Reviewed

Probab=98.14  E-value=5.6e-06  Score=63.46  Aligned_cols=58  Identities=19%  Similarity=0.159  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCC---c--ceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPT---I--GAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~-~~~---~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      -.++++|++|+|||||+|.|++....... .+.   .  .++.....+...+.   ..++||||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            46899999999999999999875432111 110   0  12222233333333   25899999743

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.10  E-value=3.3e-05  Score=60.63  Aligned_cols=141  Identities=13%  Similarity=0.080  Sum_probs=70.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCc--------------------ceeEEEEEEE-------eCCcEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYD---QQEPTI--------------------GAAFFTQILS-------LSEATV   59 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~---~~~~~~--------------------~~~~~~~~~~-------~~~~~~   59 (198)
                      .-.++++|++|+||||++..|.......   .....+                    +.......-.       ......
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            4578899999999999999887531100   000000                    1111000000       001234


Q ss_pred             EEEEEeCCCchhhcccch---hhh---cCCCeEEEEEECCC-hhhHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCCCC
Q 048059           60 KFDIWDTAGQERYHSLAP---MYY---RGAAAAVVVYDISN-MDTFNRANKLVQELQRQGNQI--VVMALAANKSDLDSQ  130 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~---~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~  130 (198)
                      .+.++||+|.........   ..+   ....-.++|++++. .+.+.++...+..........  .+--+|.||.|....
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~  296 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN  296 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence            688999999753322111   112   22345688888864 344444433333222110000  123577799995432


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEEcc
Q 048059          131 REVPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                      .    =.+..+....+.|+..++.
T Consensus       297 ~----G~~l~~~~~~~lPi~yvt~  316 (374)
T PRK14722        297 L----GGVLDTVIRYKLPVHYVST  316 (374)
T ss_pred             c----cHHHHHHHHHCcCeEEEec
Confidence            2    2345566666777666553

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.10  E-value=2.9e-05  Score=55.83  Aligned_cols=84  Identities=13%  Similarity=0.057  Sum_probs=46.4

Q ss_pred             EEEEEEeCCCchhhcc----cchhhh--cCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      +.+.|+||+|......    ....++  ...+-+++|.+++... .++.+...+    ...+   +--++.||.|.... 
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~~---~~~lIlTKlDet~~-  155 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAFG---IDGLILTKLDETAR-  155 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHSS---TCEEEEESTTSSST-
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hccc---CceEEEEeecCCCC-
Confidence            4688999999643322    111111  2577889999986543 233333322    2211   22466799995322 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEc
Q 048059          132 EVPTEEGEQFSQENGMFYIETS  153 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~S  153 (198)
                         .-.+..++...+.|+-.++
T Consensus       156 ---~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  156 ---LGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             ---THHHHHHHHHHTSEEEEEE
T ss_pred             ---cccceeHHHHhCCCeEEEE
Confidence               2345666667788876665

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.07  E-value=0.00021  Score=57.99  Aligned_cols=82  Identities=15%  Similarity=0.204  Sum_probs=53.7

Q ss_pred             EEEEEeCCCc-------------hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHH-HhCCCCceEEEEEeCC
Q 048059           60 KFDIWDTAGQ-------------ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQ-RQGNQIVVMALAANKS  125 (198)
Q Consensus        60 ~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~iiv~nK~  125 (198)
                      ...++|.||.             +....+..++..+.+++|+|+--   .|.+.-......+- ...+.....|+|.||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            5779999984             33455778889999999999842   12222222222222 2233456788999999


Q ss_pred             CCCCCCCCCHHHHHHHHHH
Q 048059          126 DLDSQREVPTEEGEQFSQE  144 (198)
Q Consensus       126 Dl~~~~~~~~~~~~~~~~~  144 (198)
                      |+.+..-.+...++.+...
T Consensus       490 DlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             chhhhccCCHHHHHHHHhc
Confidence            9987766666777776654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.04  E-value=2.3e-05  Score=62.50  Aligned_cols=134  Identities=12%  Similarity=0.087  Sum_probs=69.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-----------------------cceeEEEEEEE-------eCCcEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT-----------------------IGAAFFTQILS-------LSEATV   59 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~~~   59 (198)
                      .-.|+++|++|+||||++..|.+..........                       .+.......-.       ..-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            458999999999999999987653100000000                       00000000000       001124


Q ss_pred             EEEEEeCCCchhhcc----cchhhh--cCCCeEEEEEECC-ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           60 KFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDIS-NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      .+.++||+|......    ....+.  ....-.++|+|++ ....+.++.   ..+..    --+--+|+||.|..... 
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~---~~f~~----~~~~~~I~TKlDEt~~~-  342 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI---SAYQG----HGIHGCIITKVDEAASL-  342 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH---HHhcC----CCCCEEEEEeeeCCCCc-
Confidence            578999999643221    122221  2244578888887 343343333   22211    11335777999964322 


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcc
Q 048059          133 VPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                         =.+..++...+.++..++.
T Consensus       343 ---G~~l~~~~~~~lPi~yvt~  361 (420)
T PRK14721        343 ---GIALDAVIRRKLVLHYVTN  361 (420)
T ss_pred             ---cHHHHHHHHhCCCEEEEEC
Confidence               2345666677887766653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.04  E-value=7.3e-05  Score=52.63  Aligned_cols=84  Identities=13%  Similarity=0.053  Sum_probs=44.8

Q ss_pred             EEEEEEEeCCCchhhc----ccchhh--hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYH----SLAPMY--YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      ...+.++|++|.....    .....+  ....+.+++|+|......  .+ .+...+.+..+   ...+|.||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~~---~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEALG---ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence            3457889999974221    111111  134899999999864432  22 23333333222   355677999964422


Q ss_pred             CCCHHHHHHHHHHcCCeEEE
Q 048059          132 EVPTEEGEQFSQENGMFYIE  151 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~  151 (198)
                      .    .+...+...++|+..
T Consensus       156 g----~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 G----AALSIRAVTGKPIKF  171 (173)
T ss_pred             c----hhhhhHHHHCcCeEe
Confidence            2    223355556666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=9.6e-06  Score=66.03  Aligned_cols=119  Identities=18%  Similarity=0.094  Sum_probs=82.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCC-C-------C--------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQF-Y-------D--------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~-~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      .-.+|.+.-.-.+||||+-++++.-.- .       .        +....-|.+.......+.+..+.+.++||||+-.|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            457888999999999999988763100 0       0        00111234444444555566889999999999999


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      .-..+..++-.|+.++|++....-.-+...-|.+. .+   .+.|.+..+||.|.-...
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r---y~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR---YNVPRICFINKMDRMGAS  172 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh---cCCCeEEEEehhhhcCCC
Confidence            88889999999999999998655433333444433 22   457899999999975433

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.02  E-value=9.8e-06  Score=64.76  Aligned_cols=57  Identities=19%  Similarity=0.150  Sum_probs=42.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE   70 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   70 (198)
                      .+.|.+||-|||||||.||+|.+.+.. ....|+|-+--..++.+..   .+.|.|+||--
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            699999999999999999999987743 3445666554444444444   35699999963

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.99  E-value=9.1e-05  Score=56.05  Aligned_cols=95  Identities=19%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             cccchhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIE  151 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ..+..--..+.|-+++|+++.+|+ +...+.+++-....   .++..+|++||.|+....+...++........+.+++.
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~  146 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF  146 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence            334444556788888888888876 44555555433322   33455667899999754443224556666778999999


Q ss_pred             EccCCCCCHHHHHHHHHHH
Q 048059          152 TSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~  170 (198)
                      +|++++++++++...+..+
T Consensus       147 ~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         147 VSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             ecCcCcccHHHHHHHhcCC
Confidence            9999999999998876543

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.97  E-value=3.4e-05  Score=54.07  Aligned_cols=135  Identities=16%  Similarity=0.221  Sum_probs=66.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeC-CCch--------------------
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT-AGQE--------------------   70 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~~--------------------   70 (198)
                      +|++-|++|+|||||++++....... ..+.-|  +....+.-++...-+.+.|. .|..                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987532111 112212  23333344555555666665 2211                    


Q ss_pred             --hhcc----cchhhhcCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 048059           71 --RYHS----LAPMYYRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQ  143 (198)
Q Consensus        71 --~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  143 (198)
                        .+..    .....+..+|  ++++|=-.+  +|.. ..|.+.+........|++.++-+..       .....+++..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHh
Confidence              1111    1111113445  677773222  1111 2344444443345678887776652       1123567777


Q ss_pred             HcCCeEEEEccCCCCCH
Q 048059          144 ENGMFYIETSAKTAQNI  160 (198)
Q Consensus       144 ~~~~~~~~~Sa~~~~~i  160 (198)
                      ..++.+++++..+.+.+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            77889999887776554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=0.00021  Score=58.39  Aligned_cols=135  Identities=15%  Similarity=0.148  Sum_probs=69.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC------CCCCC-----------------CcceeEEEEEEE------e-CCcEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFY------DQQEP-----------------TIGAAFFTQILS------L-SEATV   59 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~------~~~~~-----------------~~~~~~~~~~~~------~-~~~~~   59 (198)
                      .-.|+|+|++|+||||++..|......      .....                 ..+..+....-.      + ....+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            457899999999999999887642100      00000                 001111000000      0 01246


Q ss_pred             EEEEEeCCCchhhcccch---hhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC
Q 048059           60 KFDIWDTAGQERYHSLAP---MYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP  134 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  134 (198)
                      .+.|+||+|........-   ..+  ......++|++.+.  +..++...+..+...    .+.-+|+||.|...    .
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~----~  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG----R  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----c
Confidence            788999999643221100   001  11234567777653  334444444443332    35668889999632    1


Q ss_pred             HHHHHHHHHHcCCeEEEEcc
Q 048059          135 TEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~Sa  154 (198)
                      .-.+.......+.++..++.
T Consensus       500 lG~aLsv~~~~~LPI~yvt~  519 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVTD  519 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEeC
Confidence            23455666667777766653

>PRK10867 signal recognition particle protein; Provisional

Probab=97.92  E-value=8.1e-05  Score=59.71  Aligned_cols=86  Identities=14%  Similarity=0.042  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCchhhcc----cchhh--hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      +.+.|+||+|......    ....+  .-..+.+++|.|....+   ++......+....+   ..-+|.||.|......
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~~---i~giIlTKlD~~~rgG  257 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEALG---LTGVILTKLDGDARGG  257 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhCC---CCEEEEeCccCccccc
Confidence            5688999999532211    11111  12567889999986542   22233333332211   2356779999643222


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcc
Q 048059          133 VPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                          .+.......++|+.+++.
T Consensus       258 ----~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        258 ----AALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ----HHHHHHHHHCcCEEEEeC
Confidence                245556667787666554

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.92  E-value=0.00016  Score=57.09  Aligned_cols=134  Identities=16%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC---------CCCC------------CCcceeEEEEEE--E----e---C-CcE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFY---------DQQE------------PTIGAAFFTQIL--S----L---S-EAT   58 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~---------~~~~------------~~~~~~~~~~~~--~----~---~-~~~   58 (198)
                      ...|+++|++||||||++..|......         ....            ...+..+....-  .    +   . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            367999999999999999988642110         0000            001111110000  0    0   0 013


Q ss_pred             EEEEEEeCCCchhhcc----cchhhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      +.+.|+||+|......    ....++  ...+.++||+|++...  .++...+..+...    .+--+|+||.|....- 
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~k~-  393 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETASS-  393 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCCCc-
Confidence            5788999999743221    112222  2356788998875322  2333333333221    1235777999964422 


Q ss_pred             CCHHHHHHHHHHcCCeEEEEc
Q 048059          133 VPTEEGEQFSQENGMFYIETS  153 (198)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~S  153 (198)
                         =.+..++...++|+..++
T Consensus       394 ---G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        394 ---GELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             ---cHHHHHHHHHCcCEEEEe
Confidence               234566666788766655

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.91  E-value=2.3e-05  Score=62.86  Aligned_cols=86  Identities=14%  Similarity=0.033  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCchhhccc----ch--hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHSL----AP--MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      ..+.|+||+|.......    ..  .....+|.+++|+|++...   +.......+....   ...-+|.||.|....- 
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~~-  248 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAKG-  248 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCcc-
Confidence            36889999996433211    11  1134688999999986542   2222222332211   1245778999964322 


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcc
Q 048059          133 VPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                         =.+.......+.|+.+++.
T Consensus       249 ---G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        249 ---GGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ---cHHHHHHHHHCcCEEEEec
Confidence               1234445556777665553

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.90  E-value=0.00016  Score=53.44  Aligned_cols=86  Identities=13%  Similarity=0.054  Sum_probs=51.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-------cccchhhhcC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-------HSLAPMYYRG   82 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~   82 (198)
                      .-+|.++|-|.+||||++..|++..-.............+-.+.  -..-++++.|.||.-+-       ....-+..+.
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~--y~gaKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIR--YKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEe--ccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence            35899999999999999999987543222211111111111122  23346889999985211       1123344567


Q ss_pred             CCeEEEEEECCChhh
Q 048059           83 AAAAVVVYDISNMDT   97 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s   97 (198)
                      ++.+++|.|+..|-+
T Consensus       137 cnli~~vld~~kp~~  151 (358)
T KOG1487|consen  137 CNLIFIVLDVLKPLS  151 (358)
T ss_pred             ccEEEEEeeccCccc
Confidence            899999999776544

>TIGR00959 ffh signal recognition particle protein

Probab=97.88  E-value=5.1e-05  Score=60.77  Aligned_cols=86  Identities=14%  Similarity=0.056  Sum_probs=48.9

Q ss_pred             EEEEEEeCCCchhhccc----chh--hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHSL----APM--YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      +.+.|+||+|.......    ...  ...+.+.+++|+|....+   +...+...+.....   ..-+|.||.|......
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~~~G  256 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDARGG  256 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCccccc
Confidence            56889999995322111    111  123578899999986543   33333333333221   3457789999643222


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcc
Q 048059          133 VPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                          .+...+...++|+.+++.
T Consensus       257 ----~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       257 ----AALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ----HHHHHHHHHCcCEEEEeC
Confidence                256666667787766554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.87  E-value=0.0003  Score=56.57  Aligned_cols=86  Identities=14%  Similarity=0.100  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCchhhc----ccchhhhc---CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYH----SLAPMYYR---GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      +.+.|+||+|.....    .....++.   ...-+++|++.+..  ...+...+..+...   . +--+|.||.|.... 
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~~-  372 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETSS-  372 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEeccccccc-
Confidence            578899999974332    12222333   23466778887532  22333332332211   1 23577899996332 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEcc
Q 048059          132 EVPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                         .-.+..+....++|+..++.
T Consensus       373 ---~G~i~~~~~~~~lPv~yit~  392 (424)
T PRK05703        373 ---LGSILSLLIESGLPISYLTN  392 (424)
T ss_pred             ---ccHHHHHHHHHCCCEEEEeC
Confidence               23466777778888766654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.86  E-value=0.00014  Score=57.12  Aligned_cols=156  Identities=13%  Similarity=0.145  Sum_probs=77.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---cceeEEEE-----------------EEEeC----------CcEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT---IGAAFFTQ-----------------ILSLS----------EATV   59 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~---~~~~~~~~-----------------~~~~~----------~~~~   59 (198)
                      .-.|.++||+||||||-+..|............   +.++.+..                 ....+          -.++
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            567999999999999988776642220000011   11110000                 00011          1245


Q ss_pred             EEEEEeCCCchhhccc----chhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCCCCCC
Q 048059           60 KFDIWDTAGQERYHSL----APMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM-ALAANKSDLDSQRE  132 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~  132 (198)
                      .+.|+||.|...+...    ...++.  ...-+.+|++++..  .+++...+..+..     +|+ -+++||.|-...  
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~-----~~i~~~I~TKlDET~s--  353 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL-----FPIDGLIFTKLDETTS--  353 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc-----CCcceeEEEcccccCc--
Confidence            7889999997654432    223332  23445667777633  3455544444432     222 467799995321  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcc--CCCCCHHHH-HHHHHHHHHhhCC
Q 048059          133 VPTEEGEQFSQENGMFYIETSA--KTAQNINEL-FYEIAKRLARVSP  176 (198)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~~-~~~l~~~~~~~~~  176 (198)
                        .=.......+.+.|+..++-  .--++|... -.||++.+..-..
T Consensus       354 --~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~  398 (407)
T COG1419         354 --LGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA  398 (407)
T ss_pred             --hhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence              22334455555666554442  222333222 2455555554433

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.81  E-value=0.00036  Score=50.80  Aligned_cols=77  Identities=23%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             EEEEEeCC-CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHH
Q 048059           60 KFDIWDTA-GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEG  138 (198)
Q Consensus        60 ~~~l~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  138 (198)
                      .+.++||- |-+.+.   +...+++|.+|.|.|.+- .++...++..+..... . -.++.+|.||.|-.      .+..
T Consensus       135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~el-g-~k~i~~V~NKv~e~------e~~~  202 (255)
T COG3640         135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL-G-IKRIFVVLNKVDEE------EELL  202 (255)
T ss_pred             cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh-C-CceEEEEEeeccch------hHHH
Confidence            35566662 433332   233467999999999753 4555554443333222 2 46899999999943      2344


Q ss_pred             HHHHHHcCCe
Q 048059          139 EQFSQENGMF  148 (198)
Q Consensus       139 ~~~~~~~~~~  148 (198)
                      ..++...+.+
T Consensus       203 ~~~~~~~~~~  212 (255)
T COG3640         203 RELAEELGLE  212 (255)
T ss_pred             HhhhhccCCe
Confidence            5555555554

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.81  E-value=0.00013  Score=49.52  Aligned_cols=106  Identities=18%  Similarity=0.210  Sum_probs=61.2

Q ss_pred             EEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC
Q 048059           14 VLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS   93 (198)
Q Consensus        14 ~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   93 (198)
                      +.-|..|+|||++.-.+...-. .....+.-.+..   .......+.+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            4567889999999765543110 000000000000   0001111678899999752  333456788899999999864


Q ss_pred             ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059           94 NMDTFNRANKLVQELQRQGNQIVVMALAANKSDL  127 (198)
Q Consensus        94 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  127 (198)
                       ..++..+...++.+.... ...++.+|.|+.+.
T Consensus        78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence             455666555555555433 34567788999984

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.80  E-value=0.00019  Score=46.04  Aligned_cols=82  Identities=16%  Similarity=0.168  Sum_probs=50.0

Q ss_pred             EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           13 LVLLG-DMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        13 i~v~G-~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      |.+.| ..|+||||+...+...... ...+       ...+..+.. +.+.++|+|+...  ......+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDLDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeCCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence            56666 5689999998766542211 1111       111222221 6788999998642  223367788999999988


Q ss_pred             CCChhhHHHHHHHHH
Q 048059           92 ISNMDTFNRANKLVQ  106 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~  106 (198)
                      . +..++..+..+++
T Consensus        71 ~-~~~s~~~~~~~~~   84 (104)
T cd02042          71 P-SPLDLDGLEKLLE   84 (104)
T ss_pred             C-CHHHHHHHHHHHH
Confidence            6 4556666666655

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.80  E-value=0.00023  Score=44.60  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-chhhhcCCCeEEEEEE
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-APMYYRGAAAAVVVYD   91 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d   91 (198)
                      +++.|..|+||||+...+...-..      .+    .....++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g----~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK------RG----KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH------CC----CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999998877653211      01    1111122    6779999986432211 1455667899999987


Q ss_pred             CCChhhHHHHHHHHHHHHH-hCCCCceEEEEEe
Q 048059           92 ISNMDTFNRANKLVQELQR-QGNQIVVMALAAN  123 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~n  123 (198)
                      ... .+........+.... ......+..++.|
T Consensus        68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          68 PEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             Cch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            643 344444433222222 2223445555543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.78  E-value=0.00011  Score=50.53  Aligned_cols=33  Identities=21%  Similarity=0.059  Sum_probs=23.4

Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS   93 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   93 (198)
                      .+.+.|+||+|...   ....++..+|-+|++...+
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe  123 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPG  123 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCC
Confidence            46788999988542   2234778899888887654

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.78  E-value=2.4e-05  Score=60.72  Aligned_cols=58  Identities=17%  Similarity=0.201  Sum_probs=43.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ...+++.|+|-|++||||+||+|..... .....+.|.+.....+..+.   .+.|.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheeccC---CceeccCCce
Confidence            5679999999999999999999997664 33345556655555554443   5679999995

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.77  E-value=2.7e-05  Score=51.37  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .|+|.|++||||||+++.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998763

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.76  E-value=0.00033  Score=47.15  Aligned_cols=25  Identities=40%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .--+++.|++|+|||++++.+....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999988644

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.72  E-value=0.00021  Score=40.12  Aligned_cols=44  Identities=20%  Similarity=0.107  Sum_probs=30.5

Q ss_pred             CCCeEEEEEECCC--hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059           82 GAAAAVVVYDISN--MDTFNRANKLVQELQRQGNQIVVMALAANKSD  126 (198)
Q Consensus        82 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  126 (198)
                      -.++++|++|.+.  +.+.++...++..++... .+.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            3689999999964  457788888888888875 4679999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.72  E-value=0.00062  Score=58.09  Aligned_cols=88  Identities=13%  Similarity=0.076  Sum_probs=46.6

Q ss_pred             EEEEEEeCCCchhhc----ccchhh--hcCCCeEEEEEECCC-hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYH----SLAPMY--YRGAAAAVVVYDISN-MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      +.+.|+||+|.....    ......  ....+-.++|.|.+. .+.+.++.   ..+...... -+--+|+||.|....-
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~-~i~glIlTKLDEt~~~  339 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGE-DVDGCIITKLDEATHL  339 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccC-CCCEEEEeccCCCCCc
Confidence            468899999943221    111111  123556788999864 33344333   333221111 1335778999964322


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEcc
Q 048059          132 EVPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                          =.+..+....++|+..++.
T Consensus       340 ----G~iL~i~~~~~lPI~yit~  358 (767)
T PRK14723        340 ----GPALDTVIRHRLPVHYVST  358 (767)
T ss_pred             ----cHHHHHHHHHCCCeEEEec
Confidence                2345556667777766653

>PRK08118 topology modulation protein; Reviewed

Probab=97.71  E-value=3.3e-05  Score=54.12  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      +|+|+|++|||||||.+.|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988753

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.69  E-value=3.5e-05  Score=54.53  Aligned_cols=23  Identities=35%  Similarity=0.684  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .||+|+|+|||||||+.+.|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999865

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.69  E-value=9.5e-05  Score=55.84  Aligned_cols=62  Identities=16%  Similarity=0.143  Sum_probs=39.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCcceeEEEEE-EEeCCcEEEEEEEeCCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY----DQQEPTIGAAFFTQI-LSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~   69 (198)
                      ....+++.|+|.||+|||||+|++......    ....+..|.+..... +.+.... .+.++||||-
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            345789999999999999999987643221    222233444443333 3343333 3779999995

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.67  E-value=7.7e-05  Score=58.48  Aligned_cols=87  Identities=13%  Similarity=0.111  Sum_probs=46.1

Q ss_pred             EEEEEEEeCCCchhhccc----chhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSL----APMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      .+.+.|+||+|.......    ...+..  ..+.+++|.+.+  ....++...+..+.    .-.+--+|+||.|....-
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~----~l~i~glI~TKLDET~~~  358 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLA----EIPIDGFIITKMDETTRI  358 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcC----cCCCCEEEEEcccCCCCc
Confidence            357889999997432221    112221  346667777653  22233333333221    111335778999964322


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEcc
Q 048059          132 EVPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                          =.+...+...+.|+..++.
T Consensus       359 ----G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        359 ----GDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             ----cHHHHHHHHHCCCEEEEec
Confidence                2345566667887766653

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.67  E-value=0.0056  Score=42.64  Aligned_cols=143  Identities=11%  Similarity=0.102  Sum_probs=98.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      +......|+++|..+.++..|..++....-  .        + ...+.... .    +-+-   .+.....    ...|.
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~--------~-~l~Vh~a~-s----LPLp---~e~~~lR----prIDl   67 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDK--E--------F-KLKVHLAK-S----LPLP---SENNNLR----PRIDL   67 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhcc--c--------e-eEEEEEec-c----CCCc---ccccCCC----ceeEE
Confidence            344578999999999999999999985221  0        0 11111110 0    1111   1111112    24699


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      ++|++|.....+++.++.-+..+......+ .+.++.+-....+...+...++.+++..++++++.+.-...++...+-+
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq  146 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ  146 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence            999999999999999987777665543332 3556677777767778889999999999999999999888888777777


Q ss_pred             HHHHHHH
Q 048059          166 EIAKRLA  172 (198)
Q Consensus       166 ~l~~~~~  172 (198)
                      .|++.+.
T Consensus       147 RLL~~lq  153 (176)
T PF11111_consen  147 RLLRMLQ  153 (176)
T ss_pred             HHHHHHH
Confidence            7766544

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.65  E-value=0.00031  Score=45.34  Aligned_cols=100  Identities=14%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             EcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCCh
Q 048059           16 LGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM   95 (198)
Q Consensus        16 ~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   95 (198)
                      -+..|+||||+...|...-.......+.-.+.     .... ...+.++|+|+...  ......+..+|.++++.+. +.
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~-----d~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~-~~   76 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDL-----DLQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ-DL   76 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC-----CCCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC-Ch
Confidence            35678999998776653221110111111110     0000 11678999998632  2334567889999999875 45


Q ss_pred             hhHHHHHHHHHHHHHhCCC-CceEEEEEeC
Q 048059           96 DTFNRANKLVQELQRQGNQ-IVVMALAANK  124 (198)
Q Consensus        96 ~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK  124 (198)
                      .++..+..+++.+...... ...+.+|+|+
T Consensus        77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            6777777777777665433 3456677664

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.65  E-value=0.0002  Score=57.00  Aligned_cols=135  Identities=13%  Similarity=0.178  Sum_probs=68.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC-CCC---------CC------------CCCcceeEEEEE------EEeCCcEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ-FYD---------QQ------------EPTIGAAFFTQI------LSLSEATVKF   61 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~-~~~---------~~------------~~~~~~~~~~~~------~~~~~~~~~~   61 (198)
                      ..-++++|++||||||++..|.... ...         ..            ....+.......      -......+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3458899999999999998887421 000         00            001111111100      0001124567


Q ss_pred             EEEeCCCchhhcc----cchhhhc-----CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           62 DIWDTAGQERYHS----LAPMYYR-----GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        62 ~l~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      .++||+|......    .+..++.     ...-.++|+|++...  +++...+..+..    --+--+|.||.|....- 
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~~-  375 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADFL-  375 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCCc-
Confidence            8999999642211    1122221     234578899986443  222222222211    11335777999964322 


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcc
Q 048059          133 VPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                         =.+...+...+.|+..++.
T Consensus       376 ---G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        376 ---GSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             ---cHHHHHHHHHCCCEEEEec
Confidence               2245556667777666554

>PRK07261 topology modulation protein; Provisional

Probab=97.65  E-value=4.7e-05  Score=53.58  Aligned_cols=21  Identities=33%  Similarity=0.692  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      +|+|+|++|||||||++.|..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999998864

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.65  E-value=4.5e-05  Score=51.81  Aligned_cols=20  Identities=45%  Similarity=0.770  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+++|+|||||||+++.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.63  E-value=6.2e-05  Score=43.25  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..+|.|+.|||||||+.++..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998764

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.60  E-value=0.00081  Score=47.57  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEe--C-CCchhhcccchhhhcCCCeEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD--T-AGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D--~-~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      =.++++|+.|+|||||++.+.+...     ++.|.-      .+.+..+.+..-+  . +|+...-.+...+..+.++++
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i------~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll   94 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLI-----PNGDND------EWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL   94 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC-----CCCcEE------EECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3688999999999999998887432     222211      1122111111111  2 234444445666667777555


Q ss_pred             EE--EECCChhhHHHHHHHHHHHH
Q 048059           88 VV--YDISNMDTFNRANKLVQELQ  109 (198)
Q Consensus        88 ~v--~d~~~~~s~~~~~~~~~~~~  109 (198)
                      +=  .+.-|+.+.+.+..++..+.
T Consensus        95 LDEPts~LD~~~~~~l~~~l~~~~  118 (177)
T cd03222          95 FDEPSAYLDIEQRLNAARAIRRLS  118 (177)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHH
Confidence            41  11234455555555555543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.59  E-value=0.00044  Score=46.38  Aligned_cols=24  Identities=38%  Similarity=0.726  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      --|++.|+.|+|||||++.+....
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            358999999999999999988754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00019  Score=56.07  Aligned_cols=158  Identities=15%  Similarity=0.140  Sum_probs=86.1

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCC----------CC---------CCC----CCCc------ceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ----------FY---------DQQ----EPTI------GAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~----------~~---------~~~----~~~~------~~~~~~~~~~~~~~   57 (198)
                      ....++++++|...+||||+-..+....          +.         ..|    ..+.      |-+...-...+.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            3557999999999999999866544210          00         000    0000      11111111112222


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh---hHHHH-H-HHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD---TFNRA-N-KLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~-~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      ...+++.|.||+..|-...-.-..+||..++|+++...+   .|+.- + +-...+.. .......++++||.|-+....
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak-t~gv~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TAGVKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH-hhccceEEEEEEeccCCccCc
Confidence            346889999998776544444456789999998875432   12221 0 11111211 223457888899999642211


Q ss_pred             ---C---CHHHHHHHHHHc------CCeEEEEccCCCCCHHHHHH
Q 048059          133 ---V---PTEEGEQFSQEN------GMFYIETSAKTAQNINELFY  165 (198)
Q Consensus       133 ---~---~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~  165 (198)
                         .   ..+....+.+.+      ...++++|..+|.++++...
T Consensus       235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence               1   112223333322      24589999999999887654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.55  E-value=0.0014  Score=51.96  Aligned_cols=134  Identities=10%  Similarity=0.014  Sum_probs=68.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-----CC--------------------CCCcceeEEEEEEE-------eCCc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYD-----QQ--------------------EPTIGAAFFTQILS-------LSEA   57 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~-----~~--------------------~~~~~~~~~~~~~~-------~~~~   57 (198)
                      ...|+++|++|+||||.+..|.......     ..                    ....+..+......       -.-.
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            3579999999999999998776421100     00                    00011111111000       0012


Q ss_pred             EEEEEEEeCCCchhhcc----cchhhhcC--CC-eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHS----LAPMYYRG--AA-AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ  130 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (198)
                      .+.+.++||+|......    ....++..  .+ -.++|.|++..  ...+...+..+..    -.+--+|+||.|....
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~----~~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP----FSYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeccCCCc
Confidence            45788999999643221    11122222  23 57899998754  2333333333221    1134577799996432


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEEc
Q 048059          131 REVPTEEGEQFSQENGMFYIETS  153 (198)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~S  153 (198)
                      -    =.+..++...+.|+..++
T Consensus       328 ~----G~~l~~~~~~~~Pi~yit  346 (388)
T PRK12723        328 V----GNLISLIYEMRKEVSYVT  346 (388)
T ss_pred             c----hHHHHHHHHHCCCEEEEe
Confidence            2    224555566677765554

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.52  E-value=0.00072  Score=51.01  Aligned_cols=134  Identities=16%  Similarity=0.107  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC----CC-----------------CCCCcceeEEEEEE--E-------e-CCcEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFY----DQ-----------------QEPTIGAAFFTQIL--S-------L-SEATV   59 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~----~~-----------------~~~~~~~~~~~~~~--~-------~-~~~~~   59 (198)
                      -+++++|++|+||||++..+......    ..                 +....+..+....-  .       . ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            58999999999999998876542110    00                 00011111111000  0       0 01245


Q ss_pred             EEEEEeCCCchhhcc----cchhhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC
Q 048059           60 KFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV  133 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  133 (198)
                      .+.++||+|......    .+..++  .+.+-+++|.|++..  .+++..++..+..    -.+--++.||.|....-  
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~~~--  227 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETASS--  227 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCCCc--
Confidence            788999999753211    111222  245678999997632  2233333333322    12345778999964422  


Q ss_pred             CHHHHHHHHHHcCCeEEEEcc
Q 048059          134 PTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                        =.+..++...+.|+..++.
T Consensus       228 --G~~l~~~~~~~~Pi~~it~  246 (270)
T PRK06731        228 --GELLKIPAVSSAPIVLMTD  246 (270)
T ss_pred             --cHHHHHHHHHCcCEEEEeC
Confidence              2345566667887766653

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.50  E-value=0.0019  Score=52.59  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      --++++|++||||||.+..|..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHH
Confidence            4589999999999999998875

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.49  E-value=0.00045  Score=45.67  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      --|++-|+-|+|||||++.+....
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            458999999999999999887643

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=4.3e-05  Score=59.28  Aligned_cols=46  Identities=20%  Similarity=0.125  Sum_probs=29.5

Q ss_pred             cEEEEEEEeCCCchhhc-ccchhh-----hcCCCeEEEEEECCChhhHHHHH
Q 048059           57 ATVKFDIWDTAGQERYH-SLAPMY-----YRGAAAAVVVYDISNMDTFNRAN  102 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~  102 (198)
                      ..+.+.|+||+|..... ++.+..     .-+.|-+|||.|++-.++-+...
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa  233 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA  233 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence            45789999999964322 111111     13579999999998776554443

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.48  E-value=0.00013  Score=43.13  Aligned_cols=21  Identities=24%  Similarity=0.585  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |++.|++||||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999988764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.46  E-value=0.0042  Score=43.64  Aligned_cols=84  Identities=14%  Similarity=0.110  Sum_probs=51.8

Q ss_pred             EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH
Q 048059           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE  139 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  139 (198)
                      .+.++|+|+....  .....+..+|.+|++.+.+ ..++..+..+++.+...  ......++.|+.+.....  ..+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence            6889999875322  2344567899999998764 34566666666665552  223567889999854322  222234


Q ss_pred             HHHHHcCCeEE
Q 048059          140 QFSQENGMFYI  150 (198)
Q Consensus       140 ~~~~~~~~~~~  150 (198)
                      .+.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            55555676654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.44  E-value=0.00011  Score=52.87  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      =.++|+||+|||||||++.+-+-
T Consensus        29 evv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            35889999999999999988653

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.39  E-value=9.8e-05  Score=57.57  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=52.9

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh--cccchhhhcC
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY--HSLAPMYYRG   82 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~~~~~   82 (198)
                      ++...++-|.++|-|++||||+||.|-...... ..|..|.+   +.+++----..+-|+|+||.---  .+.....+  
T Consensus       302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGET---KVWQYItLmkrIfLIDcPGvVyps~dset~ivL--  375 (572)
T KOG2423|consen  302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGET---KVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL--  375 (572)
T ss_pred             ccCccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcc---hHHHHHHHHhceeEecCCCccCCCCCchHHHHh--
Confidence            356678999999999999999999998766432 22333322   22211111235679999996322  23333343  


Q ss_pred             CCeEEEEEECCChhh
Q 048059           83 AAAAVVVYDISNMDT   97 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s   97 (198)
                       -+++=|=++.+++.
T Consensus       376 -kGvVRVenv~~pe~  389 (572)
T KOG2423|consen  376 -KGVVRVENVKNPED  389 (572)
T ss_pred             -hceeeeeecCCHHH
Confidence             34566667777654

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.39  E-value=0.00064  Score=54.78  Aligned_cols=114  Identities=21%  Similarity=0.282  Sum_probs=74.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC------------CCCC--CCCCcceeEEEEEEEe----------------CCcEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ------------FYDQ--QEPTIGAAFFTQILSL----------------SEATV   59 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~------------~~~~--~~~~~~~~~~~~~~~~----------------~~~~~   59 (198)
                      -.++.++....-|||||-..|....            +...  ....-+.++.+..+..                ++..+
T Consensus        19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F   98 (842)
T KOG0469|consen   19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF   98 (842)
T ss_pred             cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence            4678899999999999998886421            1111  1111223333222221                22346


Q ss_pred             EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL  127 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  127 (198)
                      -+.++|.||+-.|.+...+.++-.|+.+.|+|.-+.--.+.-.-+.+.+.++   -.|+ ++.||.|.
T Consensus        99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkPv-lv~NK~DR  162 (842)
T KOG0469|consen   99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKPV-LVMNKMDR  162 (842)
T ss_pred             eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccce-EEeehhhH
Confidence            7899999999999999999999999999999987654444433344444443   2354 56699995

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.39  E-value=0.0011  Score=45.04  Aligned_cols=25  Identities=40%  Similarity=0.570  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQF   35 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~   35 (198)
                      --|++-|+-|+|||||.+.+..+--
T Consensus        26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          26 DVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             CEEEEEcCCcCChHHHHHHHHHHcC
Confidence            4588999999999999999886543

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.39  E-value=0.00074  Score=52.76  Aligned_cols=25  Identities=28%  Similarity=0.547  Sum_probs=22.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ..+|+|.|++|||||||+++|+...
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHccc
Confidence            5789999999999999999998644

>PRK06217 hypothetical protein; Validated

Probab=97.38  E-value=0.00017  Score=51.30  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988853

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.37  E-value=0.00017  Score=47.84  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988754

...

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.00015  Score=53.22  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |.++|++|+|||||++-+.+-
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999988763

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.37  E-value=0.0045  Score=47.98  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+|.|--|||||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          7 TLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            467799999999999999864

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.37  E-value=0.00018  Score=48.51  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|++|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999888744

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10646 ADP-binding protein; Provisional

Probab=97.36  E-value=0.0021  Score=44.12  Aligned_cols=23  Identities=35%  Similarity=0.713  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -|++-|+-|+|||||++.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999987643

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.35  E-value=0.0017  Score=44.34  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            46899999999999999988753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK03839 putative kinase; Provisional

Probab=97.34  E-value=0.00019  Score=50.87  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      +|+|+|+|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999888753

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.34  E-value=0.00014  Score=50.62  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999864

>PRK14530 adenylate kinase; Provisional

Probab=97.33  E-value=0.0002  Score=52.26  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.33  E-value=0.00019  Score=52.41  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|+|++|||||||++-+-+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999987765

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.33  E-value=0.00039  Score=49.83  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ++-++|+|+.||||||+.+.+..
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHH
Confidence            56789999999999999988764

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.32  E-value=0.00024  Score=47.44  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -.++++|++|+|||+++..+....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcc
Confidence            468999999999999999998654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.30  E-value=0.00023  Score=47.36  Aligned_cols=21  Identities=43%  Similarity=0.562  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.30  E-value=0.00024  Score=48.13  Aligned_cols=21  Identities=38%  Similarity=0.676  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|+|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999998864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR00235 udk uridine kinase

Probab=97.29  E-value=0.00031  Score=50.96  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=22.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      +...-|+|.|++|||||||++.|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999998763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK01889 GTPase RsgA; Reviewed

Probab=97.28  E-value=0.00037  Score=54.81  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -+++++|.+|+|||||++.|.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            479999999999999999998744

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.28  E-value=0.00025  Score=50.56  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .|+|+|++|||||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999998654

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.27  E-value=0.0014  Score=50.80  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=22.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ..+|+|.|++|||||||+++|+...
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998643

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.27  E-value=0.00025  Score=50.14  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PLN02200 adenylate kinase family protein

Probab=97.27  E-value=0.00035  Score=51.69  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+.|+|+|+|||||||+...|..
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988874

>PRK14532 adenylate kinase; Provisional

Probab=97.26  E-value=0.00026  Score=50.50  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      +|+++|+|||||||+..+|..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998875

>PRK13949 shikimate kinase; Provisional

Probab=97.26  E-value=0.0003  Score=49.43  Aligned_cols=21  Identities=38%  Similarity=0.733  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      +|+|+|++||||||+.+.|..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988775

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.23  E-value=0.0031  Score=48.84  Aligned_cols=98  Identities=19%  Similarity=0.094  Sum_probs=51.0

Q ss_pred             EEEEEEeCCCchhhcccchhhh--------cCCCeEEEEEECCChhhHHH-HH-HHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           59 VKFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDISNMDTFNR-AN-KLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      ....++.+.|-..-......+.        -..|+++-|+|+.+-..... .. ....++.. +     =+|++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-A-----D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-A-----DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-C-----cEEEEecccCC
Confidence            3455777777533222222121        23688899999865433211 21 22222211 1     24777999997


Q ss_pred             CCCCCCHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHH
Q 048059          129 SQREVPTEEGEQFSQENG--MFYIETSAKTAQNINELFY  165 (198)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~  165 (198)
                      ....  .+......++++  ++++.++.. +.+..+++.
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll~  194 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSYG-DVDLAELLD  194 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHhhc
Confidence            6553  344555555554  578887773 334444443

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.22  E-value=0.0038  Score=44.09  Aligned_cols=86  Identities=20%  Similarity=0.223  Sum_probs=59.2

Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE  136 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  136 (198)
                      ..+.+.++|+|+...  ......+..+|.++++...+ ..+...+..+++.+...   +.|+.+|+|+.|....   ..+
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            456889999996532  23345568899999999875 34666666666666543   3467899999996432   245


Q ss_pred             HHHHHHHHcCCeEEE
Q 048059          137 EGEQFSQENGMFYIE  151 (198)
Q Consensus       137 ~~~~~~~~~~~~~~~  151 (198)
                      +..++.+..+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677788888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.22  E-value=0.0016  Score=46.97  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~   34 (198)
                      |+|+|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.21  E-value=0.00029  Score=50.08  Aligned_cols=21  Identities=19%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|+|++||||||+++.|..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.21  E-value=0.0038  Score=50.99  Aligned_cols=87  Identities=9%  Similarity=0.038  Sum_probs=43.5

Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      .+|||=|+=+.-..+..+.+.+.++.+ .....|+|+++|-+-.......+......+....++..+...+-...-+.+.
T Consensus       196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~  275 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF  275 (634)
T ss_pred             eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence            346666664433333333333333322 1255789999887776433333333334444555555555555544445555


Q ss_pred             HHHHHHHH
Q 048059          164 FYEIAKRL  171 (198)
Q Consensus       164 ~~~l~~~~  171 (198)
                      +..|+...
T Consensus       276 L~ric~~e  283 (634)
T KOG1970|consen  276 LKRICRIE  283 (634)
T ss_pred             HHHHHHHh
Confidence            55555443

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.20  E-value=0.0013  Score=51.17  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=22.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ..+|+|.|++|||||||+++|+...
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999998644

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.20  E-value=0.0038  Score=49.91  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .-+|+|+||.|+|||||+.-|++..
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gkl  637 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGKL  637 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcCC
Confidence            4589999999999999998887643

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.20  E-value=0.0046  Score=47.17  Aligned_cols=20  Identities=20%  Similarity=0.270  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 048059           12 KLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~   31 (198)
                      -|+|.|++||||||+++.|-
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            68999999999999999884

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.19  E-value=0.00033  Score=50.43  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK08233 hypothetical protein; Provisional

Probab=97.19  E-value=0.00037  Score=49.27  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..-|+|.|.+|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            366889999999999999998853

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.19  E-value=0.00032  Score=51.81  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=22.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ...++++|+|++|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            34589999999999999999988753

This is thought to be an ATPase involved in viral DNA packaging [].

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.18  E-value=0.00036  Score=44.87  Aligned_cols=21  Identities=48%  Similarity=0.782  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 048059           11 AKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~   31 (198)
                      --++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            458999999999999998865

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.18  E-value=0.00041  Score=46.92  Aligned_cols=21  Identities=43%  Similarity=0.645  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998875

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.18  E-value=0.00034  Score=49.49  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999863

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK04195 replication factor C large subunit; Provisional

Probab=97.18  E-value=0.009  Score=49.13  Aligned_cols=25  Identities=40%  Similarity=0.526  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .-.++|.|++|+||||+++.+....
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3468999999999999999987643

>PRK14531 adenylate kinase; Provisional

Probab=97.18  E-value=0.00039  Score=49.49  Aligned_cols=22  Identities=36%  Similarity=0.606  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+|+++|+|||||||+...|..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988865

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.18  E-value=0.0019  Score=49.65  Aligned_cols=24  Identities=29%  Similarity=0.618  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-+|+|.|++||||||++++|...
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~  155 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAE  155 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999864

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.17  E-value=0.00041  Score=49.48  Aligned_cols=23  Identities=13%  Similarity=0.341  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .=|+|+|++|||||||+++|...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34899999999999999999864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.17  E-value=0.00034  Score=52.09  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      ++|+|+.|||||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999987

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.16  E-value=0.0004  Score=51.21  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ++|+|+|+|||||||+...|..
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999988865

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.16  E-value=0.00033  Score=50.14  Aligned_cols=22  Identities=41%  Similarity=0.653  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      +|+|+|+|||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.16  E-value=0.00042  Score=47.10  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .|.|+|+.|||||||+..|...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988763

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.16  E-value=0.00038  Score=49.39  Aligned_cols=20  Identities=25%  Similarity=0.600  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|+|+|||||||+..+|..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998875

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK00625 shikimate kinase; Provisional

Probab=97.16  E-value=0.00042  Score=48.84  Aligned_cols=21  Identities=33%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      +|+++|.+||||||+.+.|..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988865

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.15  E-value=0.0015  Score=46.55  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .-.++|+|++|||||||++.+.+..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4579999999999999999988643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.15  E-value=0.00045  Score=50.18  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ....|+|.|++|||||||++.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988763

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.13  E-value=0.00039  Score=51.00  Aligned_cols=21  Identities=19%  Similarity=0.245  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999988763

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK02496 adk adenylate kinase; Provisional

Probab=97.13  E-value=0.0005  Score=48.90  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+|+|+|+|||||||+.+.|..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>TIGR01351 adk adenylate kinases

Probab=97.11  E-value=0.00039  Score=50.62  Aligned_cols=21  Identities=48%  Similarity=0.710  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      ||+|+|+|||||||+...|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988864

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.09  E-value=0.0012  Score=52.29  Aligned_cols=114  Identities=23%  Similarity=0.220  Sum_probs=60.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh----CCCC------CCCCC-----------CcceeEEEEEEEe------------
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK----GQFY------DQQEP-----------TIGAAFFTQILSL------------   54 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~----~~~~------~~~~~-----------~~~~~~~~~~~~~------------   54 (198)
                      .+...|+++|..||||||.+-.|..    ....      ..+.|           ..+.+++.....-            
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence            3457899999999999998776543    1100      00111           1122222211000            


Q ss_pred             -CCcEEEEEEEeCCCchhhcccc------hhhhcCCCeEEEEEECCChhhH-HHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059           55 -SEATVKFDIWDTAGQERYHSLA------PMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSD  126 (198)
Q Consensus        55 -~~~~~~~~l~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D  126 (198)
                       ....+.+.|+||+|........      -.-.-+.|=++||+|+...+.- +.+..+.+.+    .   ---||+||.|
T Consensus       178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l----~---itGvIlTKlD  250 (451)
T COG0541         178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL----G---ITGVILTKLD  250 (451)
T ss_pred             HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc----C---CceEEEEccc
Confidence             0123578899999964332211      1123468899999998655433 3333332221    1   1246668888


Q ss_pred             CC
Q 048059          127 LD  128 (198)
Q Consensus       127 l~  128 (198)
                      ..
T Consensus       251 Gd  252 (451)
T COG0541         251 GD  252 (451)
T ss_pred             CC
Confidence            63

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.09  E-value=0.00053  Score=48.44  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 048059           10 QAKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~   31 (198)
                      .-.++|+|+.|+|||||++.++
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3468999999999999999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PHA00729 NTP-binding motif containing protein

Probab=97.09  E-value=0.00059  Score=49.87  Aligned_cols=23  Identities=35%  Similarity=0.673  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+|+|.|+||+|||+|+.++...
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988753

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.08  E-value=0.00047  Score=51.19  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -+.|+||.|+|||||++.+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999998

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.00045  Score=53.52  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ++++||+|||||||++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999888743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-63
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		4e-55
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-54
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		6e-54
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		6e-54
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-53
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-53
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-53
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-53
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-53
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-53
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-53
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		9e-53
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-52
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-41
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-41
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		8e-37
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-36
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		5e-34
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-33
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-33
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-32
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-32
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-32
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-32
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-32
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-32
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-32
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-31
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-31
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-31
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-31
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-31
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-31
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-31
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		4e-31
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		4e-31
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-31
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-31
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		9e-31
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-30
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-30
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		4e-30
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		5e-30
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		6e-30
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		6e-30
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-29
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-29
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-29
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-29
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-29
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-28
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		9e-28
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-27
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-27
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-27
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-27
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-27
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		4e-27
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-27
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		6e-27
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		6e-27
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		7e-27
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		8e-27
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-26
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-26
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-26
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-26
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-26
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-26
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		4e-26
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-25
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-25
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		5e-25
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		5e-25
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		9e-25
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		8e-24
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		7e-23
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-22
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		7e-22
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-21
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-21
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-21
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-21
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-21
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-21
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-21
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		7e-21
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		8e-21
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-20
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-20
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-20
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-20
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-20
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-20
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-20
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-20
4fmc_F	117	Espg-Rab1 Complex Length = 117		6e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		7e-20
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		8e-20
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-20
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		9e-20
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		9e-20
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-19
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-19
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-19
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-19
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		5e-19
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		7e-19
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-18
1byu_A	216	Canine Gdp-Ran Length = 216		1e-18
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-18
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		4e-18
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-18
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-17
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-17
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-17
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-17
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-17
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-17
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-17
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		5e-17
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		7e-17
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		8e-17
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		8e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		1e-16
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-16
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-16
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-16
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-16
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-16
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-16
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-16
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-16
6q21_A	171	Molecular Switch For Signal Transduction: Structura		3e-16
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		3e-16
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-16
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-16
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		4e-16
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-16
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-16
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		4e-16
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		5e-16
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		6e-16
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		6e-16
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		6e-16
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		6e-16
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		6e-16
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		6e-16
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		7e-16
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		7e-16
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		8e-16
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		8e-16
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		9e-16
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		9e-16
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-15
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-15
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-15
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-15
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-15
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-15
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-15
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-15
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-15
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-15
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-15
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-15
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-15
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-15
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-15
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-15
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-15
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-15
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		6e-15
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-15
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-14
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-14
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-14
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-14
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-14
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-14
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-14
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-14
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-14
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-14
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-14
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		5e-14
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		1e-13
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-13
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-13
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-13
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-13
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-13
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-13
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-13
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		4e-13
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		6e-13
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		8e-13
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-12
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-12
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-12
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		4e-12
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		7e-12
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-11
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-11
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-11
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		6e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		7e-10
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		8e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-09
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-09
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-09
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-09
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-09
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-09
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-09
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-09
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		7e-09
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-08
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-08
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-08
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-08
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-08
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-08
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-08
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-08
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		3e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		5e-08
1mh1_A	186	Small G-Protein Length = 186		5e-08
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		5e-08
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		6e-08
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		8e-08
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		8e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		8e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		9e-08
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-07
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-07
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-07
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-07
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-07
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-07
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-07
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-07
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-07
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		5e-07
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-07
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-07
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		5e-07
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		5e-07
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		6e-07
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		7e-07
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		7e-07
2kb0_A	178	Cdc42(T35a) Length = 178		7e-07
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		8e-07
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		8e-07
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		9e-07
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		9e-07
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		9e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		9e-07
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		9e-07
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-06
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-06
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-06
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-06
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-06
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-06
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-06
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		4e-06
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-06
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-06
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-06
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		5e-06
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		5e-06
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		5e-06
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		1e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-05
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-05
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		8e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		9e-05
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		1e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		3e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		3e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		3e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		5e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		9e-04

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 138/176 (78%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  GNK I AKLVLLGD+G GK+SL LRF+K QF + QE TIGAAFF+Q L++++ATVK
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F+IWDTAGQERYHSLAPMYYRG       +D++N  +F RA K VQELQ QGN  +VMAL
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
           A NKSDL   R+V  E+ + ++QENG+F++ETSAKTA N+ E+FYEIA+RL RV P
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  210 bits (535), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 128/177 (72%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
            +KI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 3   ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRG       YDI+N +TF RA   V+ELQRQ +  +V+ALA NK
Sbjct: 63  DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 122
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSG 181
           +DL ++R V  EE + ++ +N + ++ETSAKTA N+N+LF  IAK+L +  P    G
Sbjct: 123 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGG 179

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  209 bits (531), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 123/164 (75%)
Query: 8   IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
           I Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IWDTA
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
           GQERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+ALA NK+DL
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  206 bits (525), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 2   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRG       YDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 62  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L +
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  206 bits (525), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRG       YDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 122/164 (74%)
Query: 8   IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
           I Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IWDTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
           G ERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+ALA NK+DL
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1   GNKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRG       YDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 122/164 (74%)
Query: 8   IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
           I Q KLVLLG+   GK+SL LRF+KGQF++ QE TI AAF TQ + L + TVKF+IWDTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
           GQERYHSLAPMYYRG       YDI+N DTF RA   V+ELQRQ +  +V+ALA NK+DL
Sbjct: 63  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            S+R V  +E + ++ +N + ++ETSAKTA N+NE+F  IAK+L
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1   GNKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRG       YDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  205 bits (521), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1   GNKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRG       YDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1   GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRG       YDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1   GNKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRG       YDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 94/169 (55%), Positives = 125/169 (73%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 2   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAP YYRG       YDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 62  DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +DL ++R V  +E + ++ +N + + ETSAKT+ N+NE+F  IAK+L +
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 125/168 (74%)
Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           NKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IWD
Sbjct: 1   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125
           TAG ERYHSLAPMYYRG       YDI+N ++F RA   V+ELQRQ +  +V+AL+ NK+
Sbjct: 61  TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L +
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 109/172 (63%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G+ I + K+ LLGD G GK+S+  RF++  F     PTIGA+F T+ +       KF IW
Sbjct: 18  GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIW 77
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQER+HSLAPMYYRG       YDI+  D+F    K V+EL+  G + +VMA+A NK
Sbjct: 78  DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
            DL   REVP ++ +++++  G   +ETSAK A NI ELF  I++++  + P
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 112/167 (67%), Gaps = 3/167 (1%)
Query: 8   IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
           +   KLVLLG+   GK+S+ LRF+   F + +EPTIGAAF TQ ++++E TVKF+IWDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
           GQER+ SLAP YYR        YD++   +F +A   V+EL  Q ++ +++AL  NK D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120
Query: 128 ---DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
                +R+V  EEGE+ ++E G+ + ETSAKT +N+N++F  I +++
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 101/162 (62%)
Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + K+ LLGD G GK+S+  RF++  F     PTIGA+F T+ +       KF IWDTAGQ
Sbjct: 5   ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 70  ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129
           ER+ +LAPMYYRG       YDI+  +TF+     V+EL++ G   +V+A+A NK DL  
Sbjct: 65  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            REV   + + ++      ++ETSAK A NINELF EI++R+
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 103/167 (61%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G+ + + K+ LLGD G GK+S+  RF++  F     PTIGA+F T+ +       KF IW
Sbjct: 1   GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAG ER+ +LAPMYYRG       YDI+  +TF+     V+EL++ G   +V+A+A NK
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            DL   REV   + + ++      ++ETSAK A NINELF EI++R+
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  140 bits (352), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 99/160 (61%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GD G GK+ L L+F   +F    + TIG  F  +++++    +K  IWDTAGQE 
Sbjct: 12  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRG       YDI+  DTFN     +++ ++  N  +V+ L  NKSDL+S+R
Sbjct: 72  FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV  EEGE F++E+G+ ++ETSAKTA N+ E F   AK +
Sbjct: 132 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 101/167 (60%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G++    K+VLLG+   GKTSL LR+ + +F D+   T+GA+F T+ L++    V   IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQER+H+L P+YYR        YDI++ D+F +    V+EL++     + + +  NK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            DL+ +R V  +E E +++  G  +  TSAK  + I ELF ++ KR+
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 103/167 (61%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GN + + KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + TV+  +W
Sbjct: 9   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQER+ SL P Y R        YDI+N ++F++ +K + +++ +    V++ L  NK
Sbjct: 69  DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +DL  +R+V TEEGE+ ++E  + +IETSAK   N+ +LF  +A  L
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 99/160 (61%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + TV+  +WDTAGQER
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + SL P Y R        YDI+N+++F + +K + +++ +    V++ L  NK+DL  +R
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  EEGEQ ++E  + +IETSAKT  N+ +LF  +A  L
Sbjct: 124 QITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 100/162 (61%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GD G GK+ L L+F   +F    + TIG  F  +++++    +K  IWDTAGQE 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRG       YDI+  +TFN     +++ ++  +  +V+ L  NKSDL+S+R
Sbjct: 83  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +V  EEGE F++E+G+ ++ETSAKTA N+ E F   AK + R
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 100/167 (59%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G++    K+VLLG+   GKTSL LR+ + +F D+   T+ A+F T+ L++    V   IW
Sbjct: 15  GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 74
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQER+H+L P+YYR        YDI++ D+F +    V+EL++     + + +  NK
Sbjct: 75  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 134
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            DL+ +R V  +E E +++  G  +  TSAK  + I ELF ++ KR+
Sbjct: 135 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 100/167 (59%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G++    K+VLLG+   GKTSL LR+ + +F D+   T+ A+F T+ L++    V   IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQER+H+L P+YYR        YDI++ D+F +    V+EL++     + + +  NK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            DL+ +R V  +E E +++  G  +  TSAK  + I ELF ++ KR+
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 99/160 (61%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GDMG GK+ L  +F + +F      TIG  F T+I+ +S   +K  IWDTAGQER
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YDI+   T+N  +  + + +   N   V+ L  NK+DL++QR
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EE +QF++ENG+ ++E SAKT +N+ + F E AK++
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 92/156 (58%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF K +F    + TIG  F T+ L +    +K  IWDTAGQER
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDIS   ++   N  + EL+   +  V + L  NKSDL   R
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
            VPTEE + F+QEN + + ETSA  ++N+++ F E+
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + D    TIG  F  + +SL   TVK  IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ D+F+   + +QE+ R   + V   L  NK DL S+R
Sbjct: 71  FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKR 130
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRL 171
            V ++EG + +  +G+ +IETSAK A N+ + F+    EI KR+
Sbjct: 131 VVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 8/201 (3%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GN + + KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + TV+  +W
Sbjct: 11  GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAG ER+ SL P Y R        YDI+N+++F +  K + +++ +    V++ L  NK
Sbjct: 71  DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 130
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV-SPPKRSG-- 181
           +DL  +R+V  EEGE+ ++E  + +IETSAK   N+ +LF  +A  L  + S   RS   
Sbjct: 131 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 190
Query: 182 -INLNPETPERK----GFCCL 197
            I++  E P+ +    G C L
Sbjct: 191 MIDIKLEKPQEQPVSEGGCLL 211

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 9/202 (4%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GN + + KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + T++  +W
Sbjct: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAG ER+ SL P Y R        YDI+N+++F +  K + +++ +    V++ L  NK
Sbjct: 68  DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV-SPPKRSG-- 181
           +DL  +R+V  EEGE+ ++E  + +IETSAK   N+ +LF  +A  L  + S   RS   
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 187
Query: 182 -INLNPETPERK-----GFCCL 197
            I++  E P+ +     G  CL
Sbjct: 188 MIDIKLEKPQEQPVSEGGCSCL 209

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 98/160 (61%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GDMG GK+ L  +F + +F      TIG  F T+I+ +S   +K  IWDTAGQ R
Sbjct: 32  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YDI+   T+N  +  + + +   N   V+ L  NK+DL++QR
Sbjct: 92  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 151
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EE +QF++ENG+ ++E SAKT +N+ + F E AK++
Sbjct: 152 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 101/167 (60%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G+ + + KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + T++  +W
Sbjct: 1   GSPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQER+ SL P Y R        YDI+N+++F +  K + +++ +    V++ L  NK
Sbjct: 61  DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +DL  +R+V  EEGE+ ++E  + +IETSAK   N+ +LF  +A  L
Sbjct: 121 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 100/167 (59%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GN + + KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + TV+  +W
Sbjct: 1   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAG ER+ SL P Y R        YDI+N+++F +  K + +++ +    V++ L  NK
Sbjct: 61  DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +DL  +R+V  EEGE+ ++E  + +IETSAK   N+ +LF  +A  L
Sbjct: 121 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 97/160 (60%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + TV+  +WDTAGQER
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + SL P Y R        YDI+N+++F +  K + +++ +    V++ L  NK+DL  +R
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 122
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EEGE+ ++E  + +IETSAK   N+ +LF  +A  L
Sbjct: 123 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 99/160 (61%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++G+ GTGK+ L  +FI+ +F D    TIG  F ++I+++    VK  IWDTAGQER
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRG       YDI++ +T+N     + + +   +Q +V+ L  NK DLD+ R
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV   E  +F+QEN + ++ETSA T +N+ E F + A+++
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 97/168 (57%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAGQER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y  +   YYRG       YDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR 179
            VPT+E   F+++N + +IETSA  + N+ E F  I   + R+   K+
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 96/163 (58%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAGQER
Sbjct: 22  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 82  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 141
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV 174
            VPT+E   F+++NG+ +IETSA  + N+   F  I   + R+
Sbjct: 142 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+G+ G GKT+L  RF + +F      TIG  F T+ + L  A VK  IWDTAG ER
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       +D++   T+    + ++EL       +V+ L  NKSDL   R
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 146
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVS 175
           EVPTEE   F++ NG+ ++ETSA  + N+   F  + K + A+VS
Sbjct: 147 EVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 1/166 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+G+ G GKT+L  RF + +F      TIG  F T+ + L  A VK  IWDTAG ER
Sbjct: 12  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       +D++   T+    + ++EL       +V+ L  NKSDL   R
Sbjct: 72  YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVSP 176
           EVPTEE   F++ NG+ ++ETSA  + N+   F  + K + A+VS 
Sbjct: 132 EVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 177

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 99/160 (61%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++G+ GTGK+ L  +FI+ +F D    TIG  F ++I+++    VK  IWDTAGQER
Sbjct: 13  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRG       YDI++ +T+N     + + +   +Q +V+ L  NK DLD+ R
Sbjct: 73  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 132
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV   E  +F+QEN + ++ETSA T +++ E F + A+++
Sbjct: 133 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 93/156 (59%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAGQER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
            VPT+E   F+++NG+ +IETSA  + N+   F  I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 95/160 (59%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+G+ G GKT L  RF +G F   Q  TIG  F  + + ++   VK  IWDTAGQER
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYR        YDI+  ++F    + ++E+++  +  V+  L  NK DL  +R
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV  +  E+FS+   M+Y+ETSAK + N+ +LF ++A RL
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 95/163 (58%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAG ER
Sbjct: 10  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 70  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV 174
            VPT+E   F+++NG+ +IETSA  + N+   F  I   + R+
Sbjct: 130 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 40/199 (20%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE--------------- 56
           K VLLG+   GK+S+ LR  K  F++    TIGA+F T +++L++               
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 57  ----------------------ATVKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISN 94
                                   +KFDIWDTAGQERY S+ P+YYRG       +DISN
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 95  MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA 154
            +T +RA   V +L+   N I++  L ANK D  ++ +V   E ++++Q+N + +I+TSA
Sbjct: 129 SNTLDRAKTWVNQLKISSNYIII--LVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSA 185
Query: 155 KTAQNINELFYEIAKRLAR 173
           KT  NI  +FY +A+ + +
Sbjct: 186 KTGTNIKNIFYMLAEEIYK 204

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 90/160 (56%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV LG+   GKTS+  RF    F +  + TIG  F ++ L L E  V+  +WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + SL P Y R        YDI+N  +F    K +Q++  +  + V++AL  NK+DL   R
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 122
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EEG Q +QE    + ETSAK   NI  LF + A +L
Sbjct: 123 KVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 98/160 (61%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++G+ GTGK+ L  +FI+ +F D    TIG  F ++I+++    VK  IWDTAG ER
Sbjct: 10  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRG       YDI++ +T+N     + + +   +Q +V+ L  NK DLD+ R
Sbjct: 70  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV   E  +F+QEN + ++ETSA T +++ E F + A+++
Sbjct: 130 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 92/156 (58%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAG ER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
            VPT+E   F+++NG+ +IETSA  + N+   F  I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 89/156 (57%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF   +F  + + TIG  F T+ + +    +K  IWDTAG ER
Sbjct: 12  KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDIS   ++   N  + EL+   +  V + L  NKSDL   R
Sbjct: 72  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLR 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
            VPT+E + F+ EN M + ETSA  + N+++ F E+
Sbjct: 132 AVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 92/156 (58%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAG ER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 67  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 126
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
            VPT+E   F+++NG+ +IETSA  + N+   F  I
Sbjct: 127 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 96/160 (60%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++G  GTGK+ L  +FI+ +F      TIG  F ++++++   TVK  IWDTAGQER
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRG       YDI++ +T+N     + + +   +  +V+ L  NK DLD +R
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV   E  +F+QEN + ++ETSA T +N+ E F + A+ +
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 92/156 (58%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAG ER
Sbjct: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 132
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
            VPT+E   F+++NG+ +IETSA  + N+   F  I
Sbjct: 133 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 11/196 (5%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+G+ G GK+ L LRF    + +    TIG  F  + + L   TVK  IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN     +QE+ R     V+  L  NK DL  +R
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV-----------SPPKRS 180
            V  +  ++F+  N M ++ETSA  + N+ + F  +A+++                  + 
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKG 189
Query: 181 GINLNPETPERKGFCC 196
            +NL  ++    G CC
Sbjct: 190 NVNLKGQSLTNTGGCC 205

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  119 bits (299), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 1/171 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN   + +QE+ R  ++ V   L  NK DL +++
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVSPPKRSG 181
            V     ++F+   G+ ++ETSAK A N+ + F  +A  +  R+ P   +G
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 99/181 (54%), Gaps = 5/181 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+G+ G GK+ L LRF    + +    TIG  F  + + L   TVK  IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN     +QE+ R     V+  L  NK DL  +R
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPER 191
            V  +  ++F+  N M ++ETSA  + N+ + F  +A+++        S  NLN ET ++
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI----KESMSQQNLN-ETTQK 184
Query: 192 K 192
           K
Sbjct: 185 K 185

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN   + +QE+ R  ++ V   L  NK DL +++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRL 171
            V     ++F+   G+ ++ETSAK A N+ + F     EI KR+
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 27  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN   + +QE+ R  ++ V   L  NK DL +++
Sbjct: 87  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 146
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRLA 172
            V     ++F+   G+ ++ETSAK A N+ + F     EI KR+ 
Sbjct: 147 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN   + +QE+ R  ++ V   L  NK DL +++
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRL 171
            V     ++F+   G+ ++ETSAK A N+ + F     EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN   + +QE+ R  ++ V   L  NK DL +++
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRL 171
            V     ++F+   G+ ++ETSAK A N+ + F     EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+ L +RF++ +F      TIG  F  + + ++   VK  IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YDI++  TF    +  + +    N    + L  NKSD+++ R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-R 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V  ++GE  ++E G+ +IE+SAK   N+NE+F+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 91/162 (56%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK  L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN   + +QE+ R  ++ V   L  NK DL +++
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
            V     ++F+   G+ ++ETSAK A N+ + F  +A  + +
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 90/160 (56%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+G+ G GK+ L LRF    + +    TIG  F  + + L   TVK  IWDTAGQER
Sbjct: 23  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN     +QE+ R     V+  L  NK DL  +R
Sbjct: 83  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 142
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V  +  ++F+  N M ++ETSA  + N+ + F  +A+++
Sbjct: 143 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN   + +QE+ R  ++ V   L  NK DL +++
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKR 170
            V     ++F+   G+ ++ETSAK A N+ + F     EI KR
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+ L +RF++ +F      TIG  F  + + ++   VK  +WDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++  TF    +  + +    N    + L  NKSD+++ R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-R 140
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVSPPKRSGI 182
            V  ++GE  ++E G+ +IE+SAK   N+NE+F+ +AK +  ++   K  G+
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGV 192

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 1/173 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQE 70
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + L +   +K  IWDTAGQE
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 71  RYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           RY ++   YYRG       YDI+  ++F    K ++EL+   +  +V+ L  NKSDL   
Sbjct: 69  RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGIN 183
           R +   +  Q++++  + +IETSA  A N+   F+++   +  V   K++  N
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+ L +RF++ +F      TIG  F  + + ++   VK  IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YDI++  TF    +  + +    N    + L  NKSD ++ R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V  ++GE  ++E G+ +IE+SAK   N+NE+F+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+ L +RF++ +F      TIG  F  + + ++   VK  +WDTAGQER
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++  TF    +  + +    N    + L  NKSD+++ R
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-R 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V  ++GE  ++E G+ +IE+SAK   N+NE+F+ +AK +
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ +++    + +QE+ R  ++ V   L  NKSDL +++
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRLA 172
            V     ++F+   G+ ++ETSAK A N+ + F     EI KR+ 
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
           K++L+GD G GKT L +RF  G F       T+G  F  ++L +    VK  +WDTAGQE
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 71  RYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           R+ S+   YYR        YD++N  +F+     + E+       V + L  NK D   +
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVS 175
           R V  E+GE+ ++E G+ ++ETSAKT  N++  F  IAK L R S
Sbjct: 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ +++    + +QE+ R  ++ V   L  NKSDL +++
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRLA 172
            V     ++F+   G+ ++ETSAK A N+ + F     EI KR+ 
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++ ++FN   + +QE+ R  ++ V   L   K DL +++
Sbjct: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKK 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPP 177
            V     ++F+   G+ ++ETSAK A N+ + F  +A  + +   P
Sbjct: 130 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 175

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+ L +RF++ +F      TIG  F  + + ++   VK  +WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YD+++  TF    +  + +    N    + L  NKSD ++ R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V  ++GE  ++E G+ +IE+SAK   N+NE+F+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 88/160 (55%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GKT +  RF +  F      TIG  F  + + L    +K  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YDI+N  +F+     ++ ++   +  V   +  NK D++ +R
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  E GE+ + + G+ ++ETSAK   N+   F+ +A+ +
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 88/160 (55%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GKT +  RF +  F      TIG  F  + + L    +K  IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG       YDI+N  +F+     ++ ++   +  V   +  NK D++ +R
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  E GE+ + + G+ ++ETSAK   N+   F+ +A+ +
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLVL+GD   GKT +  RF  G F ++Q  TIG  F  + L +    VK  IWDTAGQER
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYR        YDI+   +F      ++++++     +V  L  NKSDL   R
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150
Query: 132 EVPTEEGEQFSQENGMFY-IETSAKTAQNINELFYEIAKRL 171
           EV   E +  ++   +   IETSAK + N+ E F  +A  L
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 3/172 (1%)
Query: 3   RPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFD 62
           RP +   + +++++G  G GKTSL  RF    F +  + T+G  F  + + L    ++  
Sbjct: 21  RPAD--FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 63  IWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAA 122
           IWDTAGQER++S+   YYR        YDI+  +TF+   K ++ + +  ++   + L  
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 123 NKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
           NK D ++ RE+  ++GE+F+Q+  GM + E SAK   N++E+F ++   + +
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G+ G GK+SL LRF    F  +   TIG  F  + +S+     K  IWDTAGQER
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQ-IVVMALAANKSDLDSQ 130
           + +L P YYRG       YD++  DTF + +  + EL+    +  +V  L  NK D ++ 
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN- 135
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           REV   EG +F++++   +IE SAKT   +   F E+ +++
Sbjct: 136 REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 3/173 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MAR  + +   KL+++GD G GK+SL LRF    F      TIG  F  + + ++   VK
Sbjct: 2   MARDYDHLF--KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVK 59
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
             IWDTAGQER+ ++   YYRG       YD+++ ++F    + + E+ +  +  V   L
Sbjct: 60  LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRIL 118
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
             NK+D   ++ V TE+  +F+ + G+   ETSAK   N+ E+F  I + + R
Sbjct: 119 VGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D+ E TIG  F  + + +    +K  +WDTAGQER
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 72  YH-SLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQ--GNQIVVMALAANKSDLD 128
           +  S+   YYR        YD++NM +F+     ++E ++    N I  + L  NK DL 
Sbjct: 82  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLR 140
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQN---INELFYEIAKRL 171
           S  +VPT+  ++F+  + M   ETSAK   +   +  +F  +A +L
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 12/190 (6%)
Query: 7   KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
           K +  K+++LGD G GKTSL  +++  +F +Q + TIGA F T+ + + +  V   IWDT
Sbjct: 5   KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 64
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFN-----RANKLVQELQRQGNQIVVMALA 121
           AGQER+ SL   +YRG       +D++  +TF      R   L+Q   R       + L 
Sbjct: 65  AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL- 123
Query: 122 ANKSDLDSQREVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            NK DL++ R+V T+  + +   +N + Y ETSAK A N+ + F  IA+   +    + +
Sbjct: 124 GNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK----QET 178
Query: 181 GINLNPETPE 190
            + L  E PE
Sbjct: 179 EVELYNEFPE 188

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 82/160 (51%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GN     KL+++G+   GKTS   R+    F      T+G  F  + +   E  VK  IW
Sbjct: 18  GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERY ++   YYRG       YDI+N ++FN       +++        + L  NK
Sbjct: 78  DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
            D++ +R VPTE+G+  +++ G  + E SAK   ++ + F
Sbjct: 138 CDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 7   KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
           K +  K+++LGD G GKTSL  +++  +F +Q + TIGA F T+ + + +  V   IWDT
Sbjct: 5   KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 64
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFN-----RANKLVQELQRQGNQIVVMALA 121
           AGQER+ SL   +YRG       +D++  +TF      R   L+Q   R       + L 
Sbjct: 65  AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL- 123
Query: 122 ANKSDLDSQREVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAK 169
            NK DL++ R+V T+  + +   +N + Y ETSAK A N+ + F  IA+
Sbjct: 124 GNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 78/153 (50%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+G+   GKTS   R+    F      T+G  F  + +   +  +K  IWDTAGQER
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDI+N ++F        +++        + L  NK DL+ +R
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
            VP E+G + + + G  + E SAK   N+ ++F
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 12/190 (6%)
Query: 7   KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
           K +  K+++LGD G GKTSL  +++  +F +Q + TIGA F T+ + + +  V   IWDT
Sbjct: 5   KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 64
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFN-----RANKLVQELQRQGNQIVVMALA 121
           AGQER+ SL   +YRG       +D++  +TF      R   L+Q   R       + L 
Sbjct: 65  AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL- 123
Query: 122 ANKSDLDSQREVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            NK D ++ R+V T+  + +   +N + Y ETSAK A N+ + F  IA+   +    + +
Sbjct: 124 GNKIDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK----QET 178
Query: 181 GINLNPETPE 190
            + L  E PE
Sbjct: 179 EVELYNEFPE 188

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG +G GK++L ++F++G F ++ +PTI  ++  Q+  +       +I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 65
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++  +Y +        Y I+   TFN    L +++ R +    V M L  NK DL+ +
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 131 REVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V  E+G+  + Q N   ++E+SAK+  N+NE+FY++ +++ R
Sbjct: 126 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 7/166 (4%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D+ E TIG  F  + + +    +K  +WDTAGQER
Sbjct: 31  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 72  YH-SLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQ--GNQIVVMALAANKSDLD 128
           +  S+   YYR        YD +N  +F+     ++E ++    N I  + L  NK DL 
Sbjct: 91  FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLR 149
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQN---INELFYEIAKRL 171
           S  +VPT+  ++F+  +     ETSAK   +   +  +F  +A +L
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 12/190 (6%)
Query: 7   KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
           K +  K+++LGD G GKTSL  +++  +F +Q + TIGA F T+ + + +  V   IWDT
Sbjct: 5   KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 64
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFN-----RANKLVQELQRQGNQIVVMALA 121
           AG ER+ SL   +YRG       +D++  +TF      R   L+Q   R       + L 
Sbjct: 65  AGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL- 123
Query: 122 ANKSDLDSQREVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            NK DL++ R+V T+  + +   +N + Y ETSAK A N+ + F  IA+   +    + +
Sbjct: 124 GNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK----QET 178
Query: 181 GINLNPETPE 190
            + L  E PE
Sbjct: 179 EVELYNEFPE 188

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y R        + I+N  +F   +   ++++R + ++ V M L  NKSDL S 
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS- 123
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V T++ +  ++  G+ +IETSAKT Q +++ FY + + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F ++ +PTI  ++  Q+  +       +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++  +Y +        Y I+   TFN    L +++ R +    V M L  NK DL+ +
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 131 REVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V  E+G+  + Q N   ++E+SAK+  N+NE+FY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F D+ +PTI  ++  Q+  +       +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++  +Y +        Y I+   TFN    L +++ R +  + V M L  NK DL+ +
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 REVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V  E+G+  + Q     ++E+SAK+  N+NE+FY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLGD G GK+SL  R++  +F  Q   TIG  F  + L +    V   IWDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
           + SL   +YRG       + + +  +F   +   +E     +    +     +  NK D+
Sbjct: 69  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128
Query: 128 DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRL 171
            S+R+V TEE + + ++NG + Y ETSAK A N+   F E  +R+
Sbjct: 129 -SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLGD G GK+SL  R++  +F  Q   TIG  F  + L +    V   IWDTAGQER
Sbjct: 11  KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 70
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
           + SL   +YRG       + + +  +F   +   +E     +    +     +  NK D+
Sbjct: 71  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 130
Query: 128 DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRL 171
            S+R+V TEE + + ++NG + Y ETSAK A N+   F E  +R+
Sbjct: 131 -SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLGD G GK+SL  R++  +F  Q   TIG  F  + L +    V   IWDTAGQER
Sbjct: 13  KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
           + SL   +YRG       + + +  +F   +   +E     +    +     +  NK+D+
Sbjct: 73  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI 132
Query: 128 DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRL 171
             +R+V TEE + + ++NG + Y ETSAK + N+   F E  +R+
Sbjct: 133 -KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y R        + I+N  +F   +   ++++R + ++ V M L  NK DL S 
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS- 123
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V T++ +  ++  G+ +IETSAKT Q +++ FY + + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           N +   K++++G  G GK++L L+F+  +F +  EPT   ++  +++ L    V+ DI D
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILD 68
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANK 124
           TAGQE Y ++   Y+R        + I+ M++F       +++ R + ++ V   L  NK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           SDL+ +R+V  EE +  +++  + Y+ETSAKT  N++++F+++ + +
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G+   GKTS   R+    F      T+G  F  + +  ++  +K  IWDTAGQER
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDI+N ++FN       +++        + L  NK D++ +R
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
            V +E G Q +   G  + E SAK   N+ + F    +RL  V   K
Sbjct: 127 VVSSERGRQLADHLGFEFFEASAKDNINVKQTF----ERLVDVICEK 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL GD   GK+S  +R  K +F +    T+G  F  + L +        +WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL---- 127
           + S+A  Y+R        YD++   +F    + V  ++   ++ V + L  NK+D+    
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 128 --DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
             + Q+ VP   GE+ +   G  + ETSAK   NI E    +A+ + +
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           N +   K++++G  G GK++L L+F+  +F +  EPT   ++  +++ L    V+ DI D
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILD 72
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANK 124
           TAGQE Y ++   Y+R        + I+ M++F       +++ R + ++ V   L  NK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           SDL+ +R+V  EE +  +++  + Y+ETSAKT  N++++F+++ + +
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           N +   K++++G  G GK++L L+F+  +F +  EPT   ++  +++ L    V+ DI D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILD 60
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANK 124
           TAGQE Y ++   Y+R        + I+ M++F       +++ R + ++ V   L  NK
Sbjct: 61  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           SDL+ +R+V  EE +  +++  + Y+ETSAKT  N++++F+++ + +
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F ++ +PTI  ++  Q+  +       +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++  +Y +        Y I+   TFN    L +++ R +  + V M L  NK DL+ +
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 REVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V  E+G+  + Q     ++E+SAK+  N+NE+FY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE 
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y R        + I+N  +F   ++  ++++R + +  V M L  NK DL + 
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 65/115 (56%)
Query: 13  LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72
           L+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 73  HSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
            ++   YYRG       YD+++ ++FN   + +QE+ R  ++ V   L  NK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  EPT   ++  +++ L    V+ DI DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y+R        + I+ M++F       +++ R + ++ V   L  NKSDL+ +
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R+V  EE +  + +  + Y+ETSAKT  N++++F+++ + +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  EPT   ++  +++ L    V+ DI DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR---QGNQIVVMALAANKSDLD 128
           Y ++   Y+R        + I+  ++F    +  +++ R   + ++I ++ +  NKSDL+
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVG-NKSDLE 126
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            +R+VP EE    ++E G+ Y+ETSAKT  N++++F+++ + +
Sbjct: 127 ERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y R        + I+N  +F   ++  ++++R + +  V M L  NK DL + 
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  EPT   ++  +++ L    V+ DI DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR---QGNQIVVMALAANKSDLD 128
           Y ++   Y+R        + I+  ++F    +  +++ R   + ++I ++ +  NKSDL+
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVG-NKSDLE 122
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            +R+VP EE    ++E G+ Y+ETSAKT  N++++F+++ + +
Sbjct: 123 ERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE 
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y R        + I+N  +F   ++  ++++R + +  V M L  NK DL + 
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y R        + I+N  +F   ++  ++++R + +  V M L  NK DL + 
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AG 122
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           N +   K++++G  G GK++L L+F+  +F +  EPT   ++  +++ L    V+ DI D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILD 60
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANK 124
           TAG E Y ++   Y+R        + I+ M++F       +++ R + ++ V   L  NK
Sbjct: 61  TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           SDL+ +R+V  EE +  +++  + Y+ETSAKT  N++++F+++ + +
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 4/169 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G+   GKTS   R+    F      T+G  F  + +  ++  +K  IWDTAG ER
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRG       YDI+N ++FN       +++        + L  NK D + +R
Sbjct: 70  YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
            V +E G Q +   G  + E SAK   N+ + F    +RL  V   K S
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTF----ERLVDVICEKXS 174

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 12/176 (6%)
Query: 7   KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
           K +  K++LLGD G GK+SL  R++  +F  Q   TIG  F  + L +    V   IWDT
Sbjct: 4   KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN-------QIVVMA 119
           AGQER+ SL   +YRG       + + +  +F       +E     +         VV+ 
Sbjct: 64  AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 120 LAANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARV 174
              +K D    R+V TEE + +  ENG + Y+ETSAK   N+   F E  +++  V
Sbjct: 124 NKVDKED----RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQE 70
           K+++LGD G GKTSL  R++  ++  Q + TIGA F T+ +++  +      +WDTAGQE
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 71  RYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSD 126
           R+ SL   +YRG       YD++N  +F        E     N    +     +  NK D
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 127 LDSQREVPTEEGEQ-FSQENG---MFYIETSAKTAQNINELFYEIAK 169
            +  +++ +E+  Q  ++  G   +F   TSAK A N++  F EIA+
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAFEEIAR 174

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 91/164 (55%), Gaps = 2/164 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V+LG    GKTSLA +F++G+F +  +PT+   + ++I++L +      + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y  L   +  G       Y ++++ +F     L Q+L    G   V + L  NK+DL  +
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV 174
           REV   EG++ ++  G  ++E+SA+  Q    +F ++ + +ARV
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +  PT+G      +   +   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAGQE++  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +  PT+G      +   +   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAGQE++  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAK-----RLARVSPPKRSG 181
           ++  G+ YIETSAKT Q + + FY + +     +L +++PP  SG
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESG 178

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 7   KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
           K  + KL + G  G GK++L +RF+  +F  + +PT+ + +  Q  ++ +  V  +I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDT 83
Query: 67  AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA---NKLVQELQRQGNQIVVMALAAN 123
           AGQE        + R        YDI++  +F        ++ E+++  N  V + L  N
Sbjct: 84  AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLILVGN 140
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAKRLAR 173
           K+DLD  R+V TEEGE+ + E    + E SA T + NI E+FYE+ + + R
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAGQE+Y  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 61  FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAGQE++  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAGQE++  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 120 CGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAGQE++  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 61  FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAGQE++  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAGQE++  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   +   ++++R + ++ V M L  NKSDL S R V T++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           ++  G+ +IETSAKT Q +++ FY + + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   +   ++++R + ++ V M L  NKSDL S R V T++ +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           ++  G+ +IETSAKT Q +++ FY + + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++FI+  F    +PTI  ++ T+I S+     + DI DTAGQE + ++   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I++  +FN   KL  ++ R +      + L  NK+DL+SQR+VP  E   F
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAK 169
              + + Y E SAK   N++E F ++ +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVR 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +KF++W
Sbjct: 10  GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQE++  L   YY         +D+++  T+       ++L R    I ++ L  NK
Sbjct: 70  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNK 128
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 129 VDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +K
Sbjct: 3   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAG E++  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 63  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 121
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 122 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +KF++WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
           QE++  L   YY         +D+++  T+       ++L R    I ++ L  NK D+ 
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNKVDIK 120
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 121 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G  + + KLV++G +G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI 
Sbjct: 5   GGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDIL 63
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAAN 123
           DTAGQE Y ++   Y R        + I+N  +F   ++  ++++R + +  V M L  N
Sbjct: 64  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 123
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           K DL + R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 124 KCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 3/171 (1%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +K
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F++WDTAG E++  L   YY         +D+++  T+       ++L R    I ++ L
Sbjct: 61  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NKSDL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 4   PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
           P   + + KLV++G +G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI
Sbjct: 2   PLGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDI 60
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAA 122
            DTAGQE Y ++   Y R        + I+N  +F   ++  ++++R + +  V M L  
Sbjct: 61  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 123 NKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           NK DL + R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 121 NKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 4   PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
           P   + + KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI
Sbjct: 2   PLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDI 60
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAA 122
            DTAGQE Y ++   Y R        + I+N  +F   ++  ++++R + +  V M L  
Sbjct: 61  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 123 NKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           NK DL + R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 121 NKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G+ + + KLV++G  G GK++L ++ I+  F D+ +P+I  ++  Q++   E T   DI 
Sbjct: 4   GSDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDIL 62
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAAN 123
           DTAGQE Y ++   Y R        + I+N  +F   ++  ++++R + +  V M L  N
Sbjct: 63  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 122
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           K DL + R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 123 KCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDI 63
           G+ + Q K+V+LGD  +GKTSL   F +  F  Q + TIG  FF + ++L     V   I
Sbjct: 1   GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRAN---KLVQELQRQGNQIVVMAL 120
           WD  GQ     +   Y  G       YDI+N  +F        +V+++  +     ++AL
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
             NK DL+  R +  E+  +F QENG      SAKT  ++   F ++A  +  +   K
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAG E Y ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   +   ++++R + ++ V M L  NK DL S R V T++ +  
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           ++  G+ +IETSAKT Q +++ FY + + + +
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   N   ++++R + +  V M L  NK DL + R V T++  + 
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHEL 151
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ +IETSAKT Q + + FY + + +
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 15/177 (8%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE----------ATVKF 61
           K + LGD G GKTS+  ++  G+F  +   T+G  F  + +                +  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG-NQIVVMAL 120
            +WDTAG ER+ SL   ++R        +D++N  +F      + +LQ    ++   + L
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKRLAR 173
             NKSDL+ QR V  EE  + +++ G+ Y ETSA    NI+     L   I KR+ R
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +KF++WDTAG
Sbjct: 5   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
            E++  L   YY         +D+++  T+       ++L R    I ++ L  NK D+ 
Sbjct: 65  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNKVDIK 123
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 124 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           +  K+V++G+   GK+S+  R+ KG F    + TIG  F  + + +++  V+  +WDTAG
Sbjct: 4   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
           QE + ++   YYRG       +  ++ ++F   +   +++  +   I   AL  NK DL 
Sbjct: 64  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKIDLL 122
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170
               +  EE E  ++   + +  TS K   N++E+F  +A++
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G+  I+ KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +W
Sbjct: 4   GSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALW 62
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN 123
           DTAGQE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  N
Sbjct: 63  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGN 121
Query: 124 KSDLDS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
           K DL +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R
Sbjct: 122 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 180
Query: 171 LA 172
            A
Sbjct: 181 AA 182

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K +L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAK 169
           ++  G+ YIETSAKT Q + + FY + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++FI+  F    +PTI  ++  Q + + +   + DI DTAGQE + ++   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVPTEEGEQF 141
                  + +++  +F    K  +++ R  ++    M L  NK+DLD QR+V  EEG+Q 
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAK 169
           +++  + Y+E SAK   N+++ F+E+ +
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVR 164

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E  +  DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  N+ DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD+  GKT L + F K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 5   IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 63
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 64  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 122
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 179

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 93/169 (55%), Gaps = 3/169 (1%)
Query: 4   PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
           P   + + KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI
Sbjct: 2   PLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDI 60
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAA 122
            DTAG E Y ++   Y R        + I+N  +F   ++  ++++R + +  V M L  
Sbjct: 61  LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 123 NKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           NK DL + R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 121 NKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +P+I  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G   +Q KLVL+GD GTGKT+   R + G+   +   T+G      +   +   +KF++W
Sbjct: 10  GEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQE++  L   YY         +D+++  T+       ++L R    I ++ L  NK
Sbjct: 70  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNK 128
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 129 VDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAG+E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLVL+GD GTGKT+   R + G+F  +   TIG          +   +KFD+WDTAG E+
Sbjct: 7   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           +  L   YY         +D+++  T+       ++L R    I ++ L  NK D+  +R
Sbjct: 67  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDV-KER 124
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
           +V  +    F ++  + Y + SAK+  N  + F  +A++LA
Sbjct: 125 KVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLA 164

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLVL+GD GTGKT+   R + G+F  +   TIG          +   +KFD+WDTAG E+
Sbjct: 6   KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           +  L   YY         +D+++  T+       ++L R    I ++ L  NK D+  +R
Sbjct: 66  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDV-KER 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
           +V  +    F ++  + Y + SAK+  N  + F  +A++LA
Sbjct: 124 KVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLA 163

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLVL+GD GTGKT+   R + G+F  +   TIG          +   +KFD+WDTAG E+
Sbjct: 14  KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           +  L   YY         +D+++  T+       ++L R    I ++ L  NK D+  +R
Sbjct: 74  FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDV-KER 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
           +V  +    F ++  + Y + SAK+  N  + F  +A++LA
Sbjct: 132 KVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLA 171

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DT GQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 27/210 (12%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
           KL+ LGD G GKT+   R+   +F  +   T+G  F  + +          S     V  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
            +WDTAG ER+ SL   ++R        +D+++  +F      + +LQ      N  +V 
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV- 131
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKRLARV 174
            L  NK+DL  QREV   +  + +++ G+ Y ETSA T QN+ +    L   I KR+ + 
Sbjct: 132 -LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKC 190
Query: 175 -----SPPKRSGIN---LNPETPERKGFCC 196
                 P   +G N   L+ E P  K   C
Sbjct: 191 VEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DT GQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 2/177 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFF-TQILSLSEATVKFDIWDTAGQE 70
           K+ L+GD G GKT+   R + G+F      T+GA       L      +KF++WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 71  RYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           +   L  +YY G       +D+++  T     + V+E Q        + + ANK D+ ++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVSPPKRSGINLNP 186
           +++  +   +  +     Y E SAKTA N    F  +A+    R      S +NL P
Sbjct: 133 QKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEP 189

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G   I+ KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +W
Sbjct: 1   GMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALW 59
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN 123
           DTAGQE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  N
Sbjct: 60  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGN 118
Query: 124 KSDLDS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
           K DL +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R
Sbjct: 119 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 177
Query: 171 LA 172
            A
Sbjct: 178 AA 179

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F ++ +PTI  ++  Q++   E T   DI DTAGQE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
           KL+ LGD G GKT+   R+   +F  +   T+G  F  + +          S     V  
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
            +WDTAGQER+ SL   ++R        +D+++  +F      + +LQ      N  +V 
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV- 145
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160
            L  NK+DL  QREV   +  + + + G+ Y ETSA T QN+
Sbjct: 146 -LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNV 186

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 123
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 123
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 6   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 65  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 123
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 66  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 124
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 181

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTA QE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTA QE Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE   ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEASAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAG E Y ++   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  + I+N  +F   ++  ++++R + +  V M L  NK DL + R V + + +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 2   ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
           A PG + +  K+VL+GD G GKTSL + F  G F +   PT+   +    L +    V  
Sbjct: 28  APPGVRSV--KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHL 84
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMAL 120
            IWDTAGQ+ Y  L P++Y         +D+++ ++F N  N+   E+     ++ ++ +
Sbjct: 85  HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVV 144
Query: 121 AANKSDLDSQRE------------VPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEI 167
              K+DL   +             V    G++ ++  G + Y+E SA+   N++ +F E 
Sbjct: 145 GC-KTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203
Query: 168 AK 169
           A+
Sbjct: 204 AE 205

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
           KL+ LGD G GKT+   R+   +F  +   T+G  F  + +          S     V  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
            +WDTAG ER+ SL   ++R        +D+++  +F      + +LQ      N  +V 
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV- 131
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKRLAR 173
            L  NK+DL  QREV   +  + +++ G+ Y ETSA T QN+ +    L   I KR+ +
Sbjct: 132 -LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 141
Query: 128 D------------SQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
                         Q  V +EEG   +     F Y+E SAKT + + E+F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L + F K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII-LVGNKKDL 141
Query: 128 D------------SQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
                         Q  V +EEG   +     F Y+E SAKT + + E+F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Query: 8   IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
           +I+ KLV++GD   GKT L + F K +F +   PT+   +   I  +    V+  +WDTA
Sbjct: 23  MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTA 81
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSD 126
           GQE Y  L P+ Y         + + + D+  N   K V E++     + ++ L ANK D
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII-LVANKKD 140
Query: 127 LDSQREVPTE----EGEQFSQENGMF---------YIETSAKTAQNINELFYEIAKRLA 172
           L S   V TE    + E    ++G           Y+E SAKT + + E+F E A R A
Sbjct: 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATRAA 198

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
           KL+ LGD G GKT+   R+   +F  +   T+G  F  + +          S     V  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
            +WDTAG ER+ SL   ++R        +D+++  +F        +LQ      N  +V 
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV- 131
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160
            L  NK+DL  QREV   +  + +++ G+ Y ETSA T QN+
Sbjct: 132 -LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L +   K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
           KL+ LGD G GKT+   R+   +F  +   T+G  F  + +          S     V  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
            +WDTAG ER+ SL   ++R        +D+++  +F        +LQ      N  +V 
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV- 131
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160
            L  NK+DL  QREV   +  + +++ G+ Y ETSA T QN+
Sbjct: 132 -LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L +   K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L +   K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 119
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 176

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L +   K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 2   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 61  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 119
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 176

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L +   K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD+  GKT L + F K QF     PT+   +   I  +    V+  +WDTAG
Sbjct: 4   IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y    P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 63  QEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V   EG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V +GD   GKT + + +   +F     PT+   F   + ++    V   +WDTAGQE 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQED 69
Query: 72  YHSLAPMYYRGXXXXXXXYD-ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL--- 127
           Y  L P+ YRG       +  IS     N   K + EL+R    + ++ L   K DL   
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLRDD 128
Query: 128 -----DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRLARVSPPKRSG 181
                D    + + +GE+  ++ G   YIE S+KT QN+  +F    K +  + PP+R  
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV--LQPPRRK- 185
Query: 182 INLNPETPERK 192
                E P R+
Sbjct: 186 -----EVPRRR 191

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L +   K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 4   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 62
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 63  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 ----DSQRE--------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
                ++RE        V +EEG   +     F Y+E SAKT + + E+F E+A R
Sbjct: 122 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 176

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V +GD   GKT + + +    F     PT+   F   ++ +   TV   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL--- 127
           Y+ L P+ YRG       + + +  ++ N A K + EL+     + ++ L   K DL   
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDD 125
Query: 128 -----DSQREVP--TEEGEQFSQENGM-FYIETSAKTAQNINELF 164
                D    VP  T +GE+  +  G   YIE S+KT QN+  +F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L +   K QF +   PT+   +   I  +    V+  +WDTAG
Sbjct: 7   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
            E Y  L P+ Y         + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 66  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 124
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
            +            Q  V  EEG   +   G F Y+E SAKT   + E+F E+A R A
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 181

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ +LG    GK+SL ++F++GQF D  +PTI    FT++++++       + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 66
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130
           Y      Y          Y ++++ +F     +  +L     ++ + + L  NK DL  +
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
           R +  EEG+  ++     ++E+SAK  Q   ++F  I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 5/159 (3%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++ + G  G GK+SL LRF+KG F +   PT+   +  Q++S  ++     I DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQ 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKL---VQELQRQGNQIVVMALAANKSDLD 128
           + ++  +           Y I++  +      +   + E++     I +M L  NK D  
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM-LVGNKCDES 122
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
             REV + E E  ++     ++ETSAK   N+ ELF E+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ +LG    GK+SL ++F++GQF D  +PTI    FT++++++       + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 66
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130
           Y      Y          Y ++++ +F     +  +L     ++ + + L  NK DL  +
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
           R +  EEG+  ++     ++E+SAK  Q   ++F  I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ +LG    GK+SL ++F++GQF D  +PTI    FT++++++       + DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130
           Y      Y          Y ++++ +F     +  +L     ++ + + L  NK DL  +
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
           R +  EEG+  ++     ++E+SAK  Q   ++F  I
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ +LG    GK+SL ++F++GQF D  +PTI    FT++++++       + DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 61
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130
           Y      Y          Y ++++ +F     +  +L     ++ + + L  NK DL  +
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
           R +  EEG+  ++     ++E+SAK  Q   ++F  I
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V +GD   GKT L + +    F     PT+   F   ++ ++ ATV   +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQED 68
Query: 72  YHSLAPMYYRGXXXXXXXYD-ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL--- 127
           Y+ L P+ YRG       +  IS     N + K + EL+     + ++ L   K DL   
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV-LVGTKLDLRDD 127
Query: 128 -----DSQREVP--TEEGEQFSQENGM-FYIETSAKTAQNINELF 164
                D    VP  T +GE+  +  G   YIE S+K+ +N+  +F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 13/183 (7%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K+SL LRF+KG F D   PTI   +  Q++S  ++     I DT G  ++ ++  +    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 83  XXXXXXXYDISNMDTFNRAN---KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE 139
                  + +++  +        KL+ +++     I VM L  NK D ++QREV T E +
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM-LVGNKCD-ETQREVDTREAQ 137
Query: 140 QFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPP-----KRSGINLNPETPERKGF 194
             +QE    ++ETSAK   N+ ELF E+     R +       KRSG      T   KG 
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSG--KQKRTDRVKGK 195
Query: 195 CCL 197
           C L
Sbjct: 196 CTL 198

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V +GD   GKT + + +    F     PT+   F   ++ +  +TV   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 72  YHSLAPMYYRGXXXXXXXYD-ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y+ L P+ YRG       +  IS     N   K + EL+     I ++ L   K DL   
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV-LVGTKLDLRDD 125
Query: 131 RE----------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
           ++          + T +GE+  +  G   Y+E S+KT QN+  +F + A R+A
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF-DTAIRVA 177

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V++GD   GKT L L F KG+      PT+   F + ++          +WDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL--DS 129
           Y  L P+ Y         + ++N  +F+  +   +   +         L   K DL  D 
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG 143
Query: 130 QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELF 164
             +V  +EG+   Q+ G   YIE S+     +NE+F
Sbjct: 144 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 3/170 (1%)
Query: 2   ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
           A P   +   KLV++GD G GK++L ++F +  F D  +PTI  ++      +       
Sbjct: 10  AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAIL 68
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMAL 120
           D+ DTAGQE + ++   Y R        Y +++  +F   ++  Q + R +  +   M L
Sbjct: 69  DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAK 169
            ANK DL   R+V  ++G++ + +  + YIETSAK    N+++ F+++ +
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V++GD   GKT L L F KG+      PT+   F + ++          +WDTAGQE 
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL--DS 129
           Y  L P+ Y         + ++N  +F+  +   +   +         L   K DL  D 
Sbjct: 83  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG 142
Query: 130 QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELF 164
             +V  +EG+   Q+ G   YIE S+     +NE+F
Sbjct: 143 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 3/170 (1%)
Query: 2   ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
           A P   +   KLV++GD G GK++L ++F +  F D+ +PTI  ++      +       
Sbjct: 10  AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAIL 68
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMAL 120
           D+ DTAGQE + ++   Y R        Y +++  +F   ++  Q + R +  +   M L
Sbjct: 69  DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAK 169
            ANK DL   R+V  ++G++ + +  + YIETSAK    N+++ F+++ +
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L +   KGQF +   PT+   +   +  +    V+  +WDTAG
Sbjct: 9   IRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADV-EVDGRRVELALWDTAG 67
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQR--QGNQIVVMALAANKS 125
           QE Y  L P+ Y         + I   D+  N   K + E+    QG  I+   L   K 
Sbjct: 68  QEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPII---LVGCKV 124
Query: 126 DL------------DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
           DL            + Q+ V ++EG+  + + G   Y E SAKT   + E+F E A R
Sbjct: 125 DLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF-EAATR 181

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 89/170 (52%), Gaps = 3/170 (1%)
Query: 2   ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
           A P   +   KLV++GD G GK++L ++F +  F  + +PTI  ++      +       
Sbjct: 10  AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAIL 68
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMAL 120
           D+ DTAGQE + ++   Y R        Y +++  +F   ++  Q + R +  +   M L
Sbjct: 69  DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAK 169
            ANK DL   R+V  ++G++ + +  + YIETSAK    N+++ F+++ +
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Query: 23  KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
           K++L ++F+ G F ++ +PTI   F+ + + +  +    +I DTAG E++ S+  +Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 83  XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
                  Y + N  +F     +  ++ R +  + V + L  NK DL+S+REV + EG   
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++E G  ++ETSAK+   ++ELF EI +++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 2   ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
           A P   +   KLV++GD G GK++L ++F +  F    +PTI  ++      +       
Sbjct: 5   AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAIL 63
Query: 62  DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMAL 120
           D+ DTAGQE + ++   Y R        Y +++  +F   ++  Q + R +  +   M L
Sbjct: 64  DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 123
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAK 169
            ANK DL   R+V  ++G++ + +  + YIETSAK    N+++ F+++ +
Sbjct: 124 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 8/158 (5%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS---EATVKFDIWDTAG 68
           ++VLLGD G GKTSLA  F   Q  D  E  +G   + + L++       V  D W+   
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANKSD 126
            ++  S      +G       Y I++  +F  A++L  +L+R  Q + + ++ L  NK+D
Sbjct: 65  LDKSWSQESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPII-LVGNKAD 122
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
           L   REV  EEG   +      +IETSA    N+ ELF
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 11  AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAF--FTQILSLSEATVKFDIWDTAG 68
            K VL+GD   GKTSL + +    +  +  PT   AF  F+ ++S+    V+  + DTAG
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT---AFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSD- 126
           Q+ +  L P+ Y         + + +  +F N + K V E++    +  ++ L   +SD 
Sbjct: 78  QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDL 136
Query: 127 ---------LDSQRE--VPTEEGEQFSQE-NGMFYIETSAKTAQNINELF 164
                    LD  +E  VP E  +  ++E     YIE SA T +N+ E+F
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 12  KLVLLGDMGTGKTSLALRFIK-GQFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTA 67
           ++VL+G+ G GK++LA  F       D     +G   + + L +   S   +  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSD 126
           G+  +  L     +        Y I++  +F +A++L  +L+R +  + + + L  NKSD
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK--RLARVSPPK 178
           L   REV   EG   +      +IETSA    N+ ELF  I +  RL R S  K
Sbjct: 126 LVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 179

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 12  KLVLLGDMGTGKTSLALRFIK-GQFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTA 67
           ++VL+G+ G GK++LA  F       D     +G   + + L +   S   +  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSD 126
           G+  +  L     +        Y I++  +F +A++L  +L+R +  + + + L  NKSD
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK--RLARVSPPK 178
           L   REV   EG   +      +IETSA    N+ ELF  I +  RL R S  K
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 179

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 12  KLVLLGDMGTGKTSLALRFIK-GQFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTA 67
           ++VL+G+ G GK++LA  F       D     +G   + + L +   S   +  D+W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSD 126
           G+  +  L     +        Y I++  +F +A++L  +L+R +  + + + L  NKSD
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 156
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK--RLARVSPPK 178
           L   REV   EG   +      +IETSA    N+ ELF  I +  RL R S  K
Sbjct: 157 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 17/198 (8%)
Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           M  P   + + KLVL+GD+  GKT++     K  + +   PT+   + T  L   E  V+
Sbjct: 2   MRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVE 60
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMA 119
             +WDT+G   Y ++ P+ Y         +DIS  +T + A  K   E+        V+ 
Sbjct: 61  LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 120
Query: 120 LAAN---KSDLDSQREVPTEEGEQFSQENGM---------FYIETSAKTAQNINELFYEI 167
           +      ++DL +  E+  ++    S E G           Y+E SA T++      +  
Sbjct: 121 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 180
Query: 168 AKRLARVSP---PKRSGI 182
           A  L    P   P++S +
Sbjct: 181 ASMLCLNKPSPLPQKSPV 198

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 5   GNKIIQA----KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           G+KII A    K V++GD   GKT L + +   +F  +  PT+   +   ++   E    
Sbjct: 1   GSKIISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT- 59
Query: 61  FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ-------- 111
             ++DTAGQE Y  L P+ Y         + + +  +F N   K V E+           
Sbjct: 60  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 119
Query: 112 -GNQI-------VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINE 162
            G QI        +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  
Sbjct: 120 VGTQIDLRDDPSTIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKN 174
Query: 163 LFYEIAKRLARVSPPK 178
           +F E    LA + PP+
Sbjct: 175 VFDEAI--LAALEPPE 188

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 4   PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
           P   + + KLVL+GD+  GKT++     K  + +   PT+   + T  L   E  V+  +
Sbjct: 4   PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSL 62
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAA 122
           WDT+G   Y ++ P+ Y         +DIS  +T + A  K   E+        V+ +  
Sbjct: 63  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC 122
Query: 123 N---KSDLDSQREVPTEEGEQFSQENGM---------FYIETSAKTAQNINELFYEIAKR 170
               ++DL +  E+  ++    S E G           Y+E SA T++      +  A  
Sbjct: 123 KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 182
Query: 171 LARVSP---PKRSGI 182
           L    P   P++S +
Sbjct: 183 LCLNKPSPLPQKSPV 197

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 4   PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
           P   + + KLVL+GD+  GKT++     K  + +   PT+   + T  L   E  V+  +
Sbjct: 21  PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSL 79
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAA 122
           WDT+G   Y ++ P+ Y         +DIS  +T + A  K   E+        V+ +  
Sbjct: 80  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC 139
Query: 123 N---KSDLDSQREVPTEEGEQFSQENGM---------FYIETSAKTAQNINELFYEIAKR 170
               ++DL +  E+  ++    S E G           Y+E SA T++      +  A  
Sbjct: 140 KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 199
Query: 171 LARVSP---PKRSGI 182
           L    P   P++S +
Sbjct: 200 LCLNKPSPLPQKSPV 214

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           N+ ++ K+V++GD   GKT+L   F K  F +   PT+   + T    +    ++  +WD
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 82
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKL----VQELQRQGNQIVVMALA 121
           T+G   Y ++ P+ Y         +DIS  +T +   K     +QE       ++V   +
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 142
Query: 122 ANKSD------LDSQREVPT--EEGEQFSQENG-MFYIETSAKTAQN-INELFY 165
             ++D      L + R+ P   ++G   +++ G   YIE SA  ++N + ++F+
Sbjct: 143 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 196

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Query: 12  KLVLLGDMGTGKTSLALRFIK-GQFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTA 67
           ++VL+G+ G GK++LA  F       D     +G   + + L +   S   +  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68  GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSD 126
           G+  +  L     +        Y I++  +F +A++L  +L+R +  + + + L  NKSD
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           L   REV   EG   +      +IETSA    N+ ELF  I +++
Sbjct: 126 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
            N+ ++ K+V++GD   GKT+L   F K  F +   PT+   + T    +    ++  +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKL----VQELQRQGNQIVVMAL 120
           DT+G   Y ++ P+ Y         +DIS  +T +   K     +QE       ++V   
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 120
Query: 121 AANKSD------LDSQREVPT--EEGEQFSQENG-MFYIETSAKTAQN-INELFY 165
           +  ++D      L + R+ P   ++G   +++ G   YIE SA  ++N + ++F+
Sbjct: 121 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 175

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           N+ ++ K+V++GD   GKT+L   F K  F +   PT+   + T    +    ++  +WD
Sbjct: 19  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 77
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKL----VQELQRQGNQIVVMALA 121
           T+G   Y ++ P+ Y         +DIS  +T +   K     +QE       ++V   +
Sbjct: 78  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 137
Query: 122 ANKSD------LDSQREVPT--EEGEQFSQENG-MFYIETSAKTAQN-INELFY 165
             ++D      L + R+ P   ++G   +++ G   YIE SA  ++N + ++F+
Sbjct: 138 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 191

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 5   GNKIIQA-KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
           G+K++QA K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +
Sbjct: 1   GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 59
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAA 122
           WDTAGQE Y  L P+ Y         + + +  +F N   K   E++       ++ L  
Sbjct: 60  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVG 118
Query: 123 NKSDLDSQRE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAK 169
            K DL   ++            +   +G   ++E G   Y+E SA T + +  +F E A 
Sbjct: 119 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AI 177
Query: 170 RLARVSPPKR 179
           R     PP +
Sbjct: 178 RAVLCPPPVK 187

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD+  GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
           + PP+
Sbjct: 177 LEPPE 181

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G+ +   K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++
Sbjct: 1   GSHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLF 59
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQ 114
           DTAGQE Y  L P+ Y         + + +  +F N   K V E+            G Q
Sbjct: 60  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 119
Query: 115 I-------VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
           I        +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 120 IDLRDDPSTIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
Query: 167 IAKRLARVSPPK 178
               LA + PP+
Sbjct: 175 AI--LAALEPPE 184

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G+ +   K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++
Sbjct: 1   GSHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLF 59
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQ 114
           DTAGQE Y  L P+ Y         + + +  +F N   K V E+            G Q
Sbjct: 60  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 119
Query: 115 I-------VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
           I        +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 120 IDLRDDPSTIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
Query: 167 IAKRLARVSPPK 178
               LA + PP+
Sbjct: 175 AI--LAALEPPE 184

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G   +  K V++GD   GKT L + +    F ++  PT+   +   + ++        ++
Sbjct: 13  GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLY 71
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQ 114
           DTAGQE Y  L P+ Y         + + N  +F N   + V EL+           G Q
Sbjct: 72  DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 131
Query: 115 IVVMALAANKSDLDSQREVP--TEEGEQFSQENG-MFYIETSAKTAQNINELFYE 166
           I +       + L+  +E P   E+G++ ++E G   Y+E SA T + +  +F E
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
           + PP+
Sbjct: 177 LEPPE 181

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 125 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 177
Query: 174 VSPPK 178
           + PP+
Sbjct: 178 LEPPE 182

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
           + PP+
Sbjct: 177 LEPPE 181

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 65
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 126 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 178
Query: 174 VSPPK 178
           + PP+
Sbjct: 179 LEPPE 183

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
           + PP+
Sbjct: 177 LEPPE 181

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 73
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 134 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 186
Query: 174 VSPPK 178
           + PP+
Sbjct: 187 LEPPE 191

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSLSEATVK-FDIWDTAG 68
           K++LLG  G GK++LA  F  G   D  E       + +  ++   EA++  +DIW+  G
Sbjct: 4   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 69  QERY--HSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANK 124
                 H +A             Y +++  +F +A++L  +L+R  Q + + ++ L  NK
Sbjct: 62  GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNK 115
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           SDL   REV  +EG   +      +IETSA    N+  LF  + +++
Sbjct: 116 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSLSEATVK-FDIWDTAG 68
           K++LLG  G GK++LA  F  G   D  E       + +  ++   EA++  +DIW+  G
Sbjct: 9   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69  QERY--HSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANK 124
                 H +A             Y +++  +F +A++L  +L+R  Q + + ++ L  NK
Sbjct: 67  GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           SDL   REV  +EG   +      +IETSA    N+  LF  + +++
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSLSEATVK-FDIWDTAG 68
           K++LLG  G GK++LA  F  G   D  E       + +  ++   EA++  +DIW+  G
Sbjct: 9   KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69  QERY--HSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANK 124
                 H +A             Y +++  +F +A++L  +L+R  Q + + ++ L  NK
Sbjct: 67  GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           SDL   REV  +EG   +      +IETSA    N+  LF  + +++
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   +    E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYT-LGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
           + PP+
Sbjct: 177 LEPPE 181

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 65
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 124
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E A R     PP
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 183
Query: 178 KR 179
            +
Sbjct: 184 VK 185

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E A R     PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
            +
Sbjct: 182 VK 183

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E A R     PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
            +
Sbjct: 182 VK 183

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E A R     PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
            +
Sbjct: 182 VK 183

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E A R     PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
            +
Sbjct: 182 VK 183

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GK  L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 70
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 130
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 131 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 183
Query: 174 VSPPK 178
           + PP+
Sbjct: 184 LEPPE 188

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSLSEAT-VKFDIW---D 65
           K++L+G+ G GK++LA  F   Q     EP      + +  ++   E T V +DIW   D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQ--RQGNQIVVMALAAN 123
             G  R H L              + +++  +F++  + +  L+  R  + + V+ L  N
Sbjct: 85  AGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGN 138
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
           KSDL   REV  EEG   +      +IETSA    N  ELF
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGLED 67
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 128 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 180
Query: 174 VSPPK 178
           + PP+
Sbjct: 181 LEPPE 185

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 67
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 128 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGLED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E    LA 
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
           + PP+
Sbjct: 177 LEPPE 181

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 65
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 126 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD+  GKT L + +    F  +  PT+   +   ++  S+  V   +WDTAGQE 
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKP-VNLGLWDTAGQED 69
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  ++ N   K   E++       ++ L   K DL   
Sbjct: 70  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 131 RE------------VPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
           ++            +   +G   ++E + + Y+E SA T + +  +F E
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G  +   K V++GD+  GKT L + +    F  +  PT+   +   ++  S+  V   +W
Sbjct: 5   GGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKP-VNLGLW 63
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN 123
           DTAGQE Y  L P+ Y         + + +  ++ N   K   E++       ++ L   
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGT 122
Query: 124 KSDLDSQRE------------VPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
           K DL   ++            +   +G   ++E + + Y+E SA T + +  +F E
Sbjct: 123 KLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E A R     PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
            +
Sbjct: 182 VK 183

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLDLRDD 123
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 64
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLDLRDD 123
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      + DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLRDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E A R     PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
            +
Sbjct: 182 VK 183

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDMGTGKTSLALRF--IKGQFYDQQEPTIGAAFFTQILSLSEAT-VKFDIW---D 65
           K++L+G+ G GK++LA  F  ++G    + E +        ++   E T + +DIW   D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQ--RQGNQIVVMALAAN 123
             G  + H L              + +++  +F++  + +  L+  R  + + V+ L  N
Sbjct: 64  AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGN 117
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
           KSDL   REV  EEG   +      +IETSA    N  ELF
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 12  KLVLLGDMGTGKTSLALRF--IKGQFYDQQEPTIGAAFFTQILSLSEAT-VKFDIW---D 65
           K++LLG+ G GK++LA  F  ++G    + E +        ++   E T + +DIW   D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66  TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQ--RQGNQIVVMALAAN 123
             G  + H L              + +++  +F++  + +  L+  R  + + V+ L  N
Sbjct: 74  AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGN 127
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
           KSDL   REV  EEG   +      +IETSA    N  ELF
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  P +   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +   +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
           Y  L P+ Y         + + +  +F N   K V E+            G QI      
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
             +  LA NK     Q+ +  E  E+ +++   + Y+E SA T + +  +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLAR 173
           ++            +   +G   ++E G   Y+E SA T + +  +F E  + + +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 90
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 149
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +L L+G   +GKT+       GQF +   PT+G      +  +++  V   IWD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGF----NMRKVTKGNVTIKIWDIGGQ 77
Query: 70  ERYHSLAPMYYRGXXXXXXXYDISNMDTF----NRANKLVQELQRQGNQIVVMALAANKS 125
            R+ S+   Y RG        D ++ +      N  + L+ + Q QG  ++V+    NK 
Sbjct: 78  PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 DL 127
           DL
Sbjct: 135 DL 136

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++  S+  V   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKP-VNLGLWDTAGQED 63
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  ++ N   K   E++       ++ L   K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E + + Y+E SA T + +  +F E A R      P
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE-AIRAVLCPQP 181
Query: 178 KR 179
            R
Sbjct: 182 TR 183

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFI-KG-QFYDQQEPTIGAAFFTQILSLSEATVKFDIW-- 64
           ++ K+ ++G+   GK++L   F  KG +F      T G       +++ + TV  +++  
Sbjct: 19  LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLL 78
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRAN---KLVQELQRQGNQIVVMALA 121
           DTAG + Y      Y+ G       +D+S+M++F       +L++  +    + +   L 
Sbjct: 79  DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138
Query: 122 ANKSDLDSQR-EVPTEEGEQFSQENGMFYIETSAK-TAQNINELFYEIAKRLAR 173
           ANK+DL  QR +V  +  + ++  N + + + SA    ++ +  F  IA    R
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 73
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 132
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 82
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 141
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +L L+G   +GKT+       GQF +   PT+G      +  +++  V   +WD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF----NMRKITKGNVTIKLWDIGGQ 77
Query: 70  ERYHSLAPMYYRGXXXXXXXYDISNMDTF----NRANKLVQELQRQGNQIVVMALAANKS 125
            R+ S+   Y RG        D ++ +      N  + L+ + Q QG  ++V+    NK 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 DL 127
           DL
Sbjct: 135 DL 136

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNK  + ++++LG    GKT++  +   GQ      PT+G      + +++   VKF++W
Sbjct: 9   GNK--EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVW 61
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMAL 120
           D  GQ++   L   YY G        D ++ D  + A    QEL R  N    +  ++ +
Sbjct: 62  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 118
Query: 121 AANKSDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
            ANK DL D+ +    +E    ++  +  +Y++ S  T+
Sbjct: 119 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 157

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +L L+G   +GKT+       GQF +   PT+G      +  +++  V   +WD  GQ
Sbjct: 31  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF----NMRKITKGNVTIKLWDIGGQ 86
Query: 70  ERYHSLAPMYYRGXXXXXXXYDISNMDTF----NRANKLVQELQRQGNQIVVMALAANKS 125
            R+ S+   Y RG        D ++ +      N  + L+ + Q QG  ++V+    NK 
Sbjct: 87  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 143
Query: 126 DL 127
           DL
Sbjct: 144 DL 145

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNK  + ++++LG    GKT++  +   GQ      PT+G      + +++   VKF++W
Sbjct: 10  GNK--EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVW 62
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMAL 120
           D  GQ++   L   YY G        D ++ D  + A    QEL R  N    +  ++ +
Sbjct: 63  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AANKSDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
            ANK DL D+ +    +E    ++  +  +Y++ S  T+
Sbjct: 120 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 158

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 5   GNKIIQA-KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
           G+  +QA K V++GD   GK  L + +    F  +  PT+   +   ++ +    V   +
Sbjct: 4   GSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 62
Query: 64  WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAA 122
           WDTAGQE Y  L P+ Y         + + +  +F N   K   E++       ++ L  
Sbjct: 63  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVG 121
Query: 123 NKSDLDSQRE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
            K DL   ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 122 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 178

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F+    K   E++       ++ L   K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 274
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E  +  A + PP
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR--AVLCPP 332

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F+    K   E++       ++ L   K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 274
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E  +  A + PP
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR--AVLCPP 332

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F+    K   E++       ++ L   K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 274
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
           ++            +   +G   ++E G   Y+E SA T + +  +F E  +  A + PP
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR--AVLCPP 332

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +       +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 90
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 149
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + ++++LG    GKT++  +   GQ      PT+G      + +++   VKF++WD  GQ
Sbjct: 322 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG----FNVETVTYKNVKFNVWDVGGQ 376
Query: 70  ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKS 125
           ++   L   YY G        D ++ D  + A    QEL R  N    +  ++ + ANK 
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQ 433
Query: 126 DL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
           DL D+ +    +E    ++  +  +Y++ S  T+
Sbjct: 434 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 467

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAG E 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 66
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 125
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 36/199 (18%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 65
Query: 72  YHSLAPMYYRGXXXXXXXYDISN-------MDTF-------------NRANKLVQELQRQ 111
           Y  L P+ Y          DI++        D F             N   K   E++  
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 112 GNQIVVMALAANKSDLDSQRE------------VPTEEGEQFSQENGMF-YIETSAKTAQ 158
                ++ L   K DL   ++            +   +G   ++E G   Y+E SA T +
Sbjct: 126 CPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 184
Query: 159 NINELFYEIAKRLARVSPP 177
            +  +F E A R     PP
Sbjct: 185 GLKTVFDE-AIRAVLCPPP 202

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   ++ +    V   +WDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 90
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y  L P+ Y         + + +  +F N   K   E++       ++ L   K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 149
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
           ++            +   +G   ++E G   Y+E SA T + +  +F E
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++++LG    GKT++  +   GQ      PT+G      + +++   VKF++WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGGQDK 56
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
              L   YY G        D ++ D  + A    QEL R  N    +  ++ + ANK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 -DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
            D+ +    +E    ++  +  +Y++ S  T+
Sbjct: 114 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 145

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++++LG    GKT++  +   GQ      PT+G      + +++   VKF++WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGGQDK 56
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
              L   YY G        D ++ D  + A    QEL R  N    +  ++ + ANK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 -DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
            D+ +    +E    ++  +  +Y++ S  T+
Sbjct: 114 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 145

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNK  + ++++LG    GKT++  +   GQ      PT+G      + +++   VKF++W
Sbjct: 10  GNK--EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVW 62
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMAL 120
           D  G ++   L   YY G        D ++ D  + A    QEL R  N    +  ++ +
Sbjct: 63  DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AANKSDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
            ANK DL D+ +    +E    ++  +  +Y++ S  T+
Sbjct: 120 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 158

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +++ LG    GKT++  +   GQ      PT+G      + +++   VKF++WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGGQDK 56
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
              L   YY G        D ++ D  + A    QEL R  N    +  ++ + ANK DL
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDL 113
Query: 128 -DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
            D+ +    +E    ++  +  +Y++ S  T+
Sbjct: 114 PDAXKPHEIQEKLGLTRIRDRNWYVQPSCATS 145

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNK  + +++++G  G GKT++  +   G+      PTIG      + ++    + F +W
Sbjct: 14  GNK--EMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGF----NVETVQYKNISFTVW 66
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN-QIVVMALAAN 123
           D  GQ+R  SL   YYR         D ++      A +++Q +  +   +  V  + AN
Sbjct: 67  DVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFAN 126
Query: 124 KSDLD---SQREVPTEEGEQFSQENGMFYIETSAKTA 157
           K DL    S  E+ TE+    S  N  ++I+++  T+
Sbjct: 127 KQDLPEAMSAAEI-TEKLGLHSIRNRPWFIQSTCATS 162

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           ++ ++++LG    GKT++  +   GQ      PT+G      + +++   VKF++WD  G
Sbjct: 2   MEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGG 56
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANK 124
            ++   L   YY G        D ++ D  + A    QEL R  N    +  ++ + ANK
Sbjct: 57  LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 113
Query: 125 SDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
            DL D+ +    +E    ++  +  +Y++ S  T+
Sbjct: 114 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 148

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           ++ ++++LG    GKT++  +   GQ      PT+G      + +++   VKF++WD  G
Sbjct: 1   MEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGG 55
Query: 69  QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANK 124
            ++   L   YY G        D ++ D  + A    QEL R  N    +  ++ + ANK
Sbjct: 56  LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 112
Query: 125 SDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
            DL D+ +    +E    ++  +  +Y++ S  T+
Sbjct: 113 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 147

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNK  + +++++G  G GKT++  +   G+      PTIG      + ++    + F +W
Sbjct: 14  GNK--EMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGF----NVETVQYKNISFTVW 66
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN-QIVVMALAAN 123
           D  GQ+R  SL   YYR         D ++      A +++Q +  +   +     + AN
Sbjct: 67  DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
Query: 124 KSDLD---SQREVPTEEGEQFSQENGMFYIETSAKTA 157
           K DL    S  E+ TE+    S  N  ++I+ +  T+
Sbjct: 127 KQDLPEAMSAAEI-TEKLGLHSIRNRPWFIQATCATS 162

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +++++G    GKTS+  +   G+      PTIG      + ++    + F +WD  GQ
Sbjct: 17  EMRILMVGLDAAGKTSILYKLKLGEIV-TTIPTIGF----NVETVEYKNISFTVWDVGGQ 71
Query: 70  ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD 128
           ++   L   YY+         D ++ D    A  +L++ L     +  ++ + ANK DL 
Sbjct: 72  DKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLP 131
Query: 129 ---SQREVPTEEGEQFSQENGMFYIETSAKT 156
              S  EV  + G Q + +N  +Y +TS  T
Sbjct: 132 QAMSISEVTEKLGLQ-TIKNRKWYCQTSCAT 161

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNK  + +++++G  G GKT++  +   G+      PTIG      +  +    + F +W
Sbjct: 14  GNK--EMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGF----NVECVQYCNISFTVW 66
Query: 65  DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALA-AN 123
           D  GQ+R  SL   YY          D ++      A +++Q +  +        L  AN
Sbjct: 67  DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
Query: 124 KSDLD---SQREVPTEEGEQFSQENGMFYIETSAKTA 157
           K DL    S  E+ TE+    S  N  ++I+ +  T+
Sbjct: 127 KQDLPEAMSAAEI-TEKLGLHSIRNRPWFIQATCATS 162

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +++++G  G GKT++  +   G+      PTIG      + ++    + F +WD  GQ+R
Sbjct: 2   RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGF----NVETVQYKNISFTVWDVGGQDR 56
Query: 72  YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLD-- 128
             SL   YYR         D ++      A +++Q +  +   +     + ANK DL   
Sbjct: 57  IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 116
Query: 129 -SQREVPTEEGEQFSQENGMFYIETSAKTA 157
            S  E+ TE+    S  N  ++I+ +  T+
Sbjct: 117 MSAAEI-TEKLGLHSIRNRPWFIQATCATS 145

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + ++++LG  G GKT++  R   G+    + PTIG      + +LS   +K ++WD  GQ
Sbjct: 18  ELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGF----NVETLSYKNLKLNVWDLGGQ 72
Query: 70  ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANK-LVQELQRQGNQIVVMALAANKSD 126
                    YY          D ++ D  + A+K L   LQ +  Q   + + ANK D
Sbjct: 73  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + ++++LG  G GKT++  R   G+      PTIG      + +++   +KF +WD  GQ
Sbjct: 2   EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF----NVETVTYKNLKFQVWDLGGQ 56
Query: 70  ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD 128
                    YY          D  + D    + ++LV  L+ +  +  ++ + ANK D++
Sbjct: 57  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 116
Query: 129 SQREVPTE 136
            Q   P+E
Sbjct: 117 -QAMTPSE 123

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYD--QQEPTIG---AAFFTQILSLSEATVKFDIW 64
          + KL ++G+ G+GKT+L  +  K +  D   Q  T+G     +  QI    +  +  ++W
Sbjct: 2  RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDIS 93
          D AG+E ++S  P +          YD+S
Sbjct: 62 DFAGREEFYSTHPHFXTQRALYLAVYDLS 90

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYD--QQEPTIG---AAFFTQILSLSEATVKFDIWDT 66
          KL ++G+ G+GKT+L  +  K +  D   Q  T+G     +  QI    +  +  ++WD 
Sbjct: 2  KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDIS 93
          AG+E ++S  P +          YD+S
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLS 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-97
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-94
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-94
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	6e-94
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	5e-93
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-90
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-90
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	5e-83
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-80
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	6e-80
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	7e-79
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-78
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	8e-78
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-77
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-77
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-76
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-76
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-76
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-75
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-75
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	5e-75
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-74
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-74
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-74
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-74
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	7e-72
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-72
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-71
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	4e-70
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-69
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-69
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-69
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	4e-69
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-69
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	9e-69
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	9e-69
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-68
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-68
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-68
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-68
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	5e-68
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-68
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-67
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-66
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-65
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	7e-65
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	8e-65
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-64
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	6e-64
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-63
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-62
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-62
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	7e-62
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-61
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-61
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-61
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	4e-60
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-59
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-59
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	9e-59
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-58
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-58
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	4e-58
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-57
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-57
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-56
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-55
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	7e-53
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	5e-42
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-41
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-39
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	8e-39
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	8e-39
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	7e-38
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	7e-38
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-37
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-36
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-35
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-34
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-33
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-33
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	7e-26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-22
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-19
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-15
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-13
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	7e-13
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-12
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-12
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	7e-12
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-11
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-10
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-10
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	4e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	9e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	5e-04

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  279 bits (716), Expect = 2e-97
 Identities = 117/178 (65%), Positives = 146/178 (82%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           MA  GNK I AKLVLLGD+G GK+SL LRF+K QF + QE TIGAAFF+Q L++++ATVK
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F+IWDTAGQERYHSLAPMYYRGAAAA++V+D++N  +F RA K VQELQ QGN  +VMAL
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
           A NKSDL   R+V  E+ + ++QENG+F++ETSAKTA N+ E+FYEIA+RL RV P +
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  272 bits (698), Expect = 1e-94
 Identities = 83/178 (46%), Positives = 118/178 (66%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           +   G+ I + K+ LLGD G GK+S+  RF++  F     PTIGA+F T+ +       K
Sbjct: 14  LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK 73

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
           F IWDTAGQER+HSLAPMYYRG+AAAV+VYDI+  D+F    K V+EL+  G + +VMA+
Sbjct: 74  FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI 133

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
           A NK DL   REVP ++ +++++  G   +ETSAK A NI ELF  I++++  + P +
Sbjct: 134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  270 bits (693), Expect = 4e-94
 Identities = 100/169 (59%), Positives = 133/169 (78%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRGA AA+VVYDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  270 bits (692), Expect = 6e-94
 Identities = 76/167 (45%), Positives = 110/167 (65%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G+ + + K+ LLGD G GK+S+  RF++  F     PTIGA+F T+ +       KF IW
Sbjct: 1   GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAG ER+ +LAPMYYRG+AAA++VYDI+  +TF+     V+EL++ G   +V+A+A NK
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120

Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            DL   REV   + + ++      ++ETSAK A NINELF EI++R+
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  269 bits (689), Expect = 5e-93
 Identities = 73/204 (35%), Positives = 114/204 (55%), Gaps = 8/204 (3%)

Query: 2   ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
              GN + + KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + TV+ 
Sbjct: 8   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 67

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALA 121
            +WDTAG ER+ SL P Y R +  AVVVYDI+N+++F +  K + +++ +    V++ L 
Sbjct: 68  QLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV 127

Query: 122 ANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSG 181
            NK+DL  +R+V  EEGE+ ++E  + +IETSAK   N+ +LF  +A  L  +   +   
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187

Query: 182 --------INLNPETPERKGFCCL 197
                   +    E P  +G C L
Sbjct: 188 REDMIDIKLEKPQEQPVSEGGCLL 211

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  261 bits (670), Expect = 2e-90
 Identities = 70/170 (41%), Positives = 108/170 (63%)

Query: 2   ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
              GN + + KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + TV+ 
Sbjct: 6   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL 65

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALA 121
            +WDTAGQER+ SL P Y R +  AVVVYDI+N ++F++ +K + +++ +    V++ L 
Sbjct: 66  QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV 125

Query: 122 ANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            NK+DL  +R+V TEEGE+ ++E  + +IETSAK   N+ +LF  +A  L
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  260 bits (667), Expect = 3e-90
 Identities = 66/167 (39%), Positives = 106/167 (63%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           G++    K+VLLG+   GKTSL LR+ + +F D+   T+GA+F T+ L++    V   IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQER+H+L P+YYR +  A++VYDI++ D+F +    V+EL++     + + +  NK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120

Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            DL+ +R V  +E E +++  G  +  TSAK  + I ELF ++ KR+
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  242 bits (621), Expect = 5e-83
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 4/178 (2%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDI 63
           G+ + Q K+V+LGD  +GKTSL   F +  F  Q + TIG  FF + ++L     V   I
Sbjct: 1   GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANK---LVQELQRQGNQIVVMAL 120
           WD  GQ     +   Y  GA   ++VYDI+N  +F        +V+++  +     ++AL
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
             NK DL+  R +  E+  +F QENG      SAKT  ++   F ++A  +  +   K
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  237 bits (606), Expect = 1e-80
 Identities = 65/160 (40%), Positives = 95/160 (59%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+G+ G GKT+L  RF + +F      TIG  F T+ + L  A VK  IWDTAG ER
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA  A++V+D++   T+    + ++EL       +V+ L  NKSDL   R
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 146

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EVPTEE   F++ NG+ ++ETSA  + N+   F  + K +
Sbjct: 147 EVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  235 bits (602), Expect = 6e-80
 Identities = 64/160 (40%), Positives = 98/160 (61%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAG ER
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA  A++VYDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            VPT+E   F+++NG+ +IETSA  + N+   F  I   +
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  232 bits (595), Expect = 7e-79
 Identities = 67/172 (38%), Positives = 102/172 (59%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAGQER
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y  +   YYRGA  A++VYDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGIN 183
            VPT+E   F+++N + +IETSA  + N+ E F  I   + R+   K+    
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 178

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  233 bits (596), Expect = 1e-78
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 2/185 (1%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ-ILSLSEATVKFDIW 64
            + +  K+ L+GD G GKT+   R + G+F      T+GA       L      +KF++W
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQE+   L  +YY GA+ A++ +D+++  T     + V+E Q        + + ANK
Sbjct: 67  DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANK 126

Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVSPPKRSGIN 183
            D+ +++++  +   +  +     Y E SAKTA N    F  +A+    R      S +N
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186

Query: 184 LNPET 188
           L P  
Sbjct: 187 LEPTE 191

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  231 bits (591), Expect = 8e-78
 Identities = 77/209 (36%), Positives = 108/209 (51%), Gaps = 24/209 (11%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF K +F    + TIG  F T+ L +    +K  IWDTAGQER
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA  A++VYDIS   ++   N  + EL+   +  V + L  NKSDL   R
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-------------------- 171
            VPTEE + F+QEN + + ETSA  ++N+++ F E+   +                    
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNA 194

Query: 172 ARVSPPKRSGINLNPETPERK----GFCC 196
              S P    I+L P   E K      CC
Sbjct: 195 NGASAPNGPTISLTPTPNENKKANGNNCC 223

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  228 bits (583), Expect = 3e-77
 Identities = 67/160 (41%), Positives = 105/160 (65%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GDMG GK+ L  +F + +F      TIG  F T+I+ +S   +K  IWDTAGQER
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGAA A++VYDI+   T+N  +  + + +   N   V+ L  NK+DL++QR
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EE +QF++ENG+ ++E SAKT +N+ + F E AK++
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  227 bits (581), Expect = 4e-77
 Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V++G+   GK+S+  R+ KG F    + TIG  F  + + +++  V+  +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA A V+V+  ++ ++F   +   +++  +   I    L  NK DL    
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA-LVQNKIDLLDDS 125

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            +  EE E  ++   + +  TS K   N++E+F  +A++ 
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  227 bits (580), Expect = 2e-76
 Identities = 73/205 (35%), Positives = 111/205 (54%), Gaps = 40/205 (19%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK----- 60
            K    K VLLG+   GK+S+ LR  K  F++    TIGA+F T +++L++  +K     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 61  --------------------------------FDIWDTAGQERYHSLAPMYYRGAAAAVV 88
                                           FDIWDTAGQERY S+ P+YYRGA  A+V
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 89  VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF 148
           V+DISN +T +RA   V +L+   N   ++ L ANK D + + +V   E ++++Q+N + 
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDKN-KFQVDILEVQKYAQDNNLL 179

Query: 149 YIETSAKTAQNINELFYEIAKRLAR 173
           +I+TSAKT  NI  +FY +A+ + +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIYK 204

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  226 bits (579), Expect = 3e-76
 Identities = 68/176 (38%), Positives = 107/176 (60%), Gaps = 4/176 (2%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++G  GTGK+ L  +FI+ +F      TIG  F ++++++   TVK  IWDTAGQER
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGAA A++VYDI++ +T+N     + + +   +  +V+ L  NK DLD +R
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPE 187
           EV   E  +F+QEN + ++ETSA T +N+ E F + A+ +      K     L+PE
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN----KIDSGELDPE 198

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  225 bits (577), Expect = 3e-76
 Identities = 67/160 (41%), Positives = 105/160 (65%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GD G GK+ L L+F   +F    + TIG  F  +++++    +K  IWDTAGQE 
Sbjct: 23  KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGAA A++VYDI+  +TFN     +++ ++  +  +V+ L  NKSDL+S+R
Sbjct: 83  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EEGE F++E+G+ ++ETSAKTA N+ E F   AK +
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  224 bits (574), Expect = 2e-75
 Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 9/187 (4%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIK--GQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
              ++ K+ ++G+   GK++L   F     +F      T G       +++ + TV  ++
Sbjct: 16  TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL 75

Query: 64  W--DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ---GNQIVVM 118
           +  DTAG + Y      Y+ G   A++V+D+S+M++F       + L+       + +  
Sbjct: 76  FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA 135

Query: 119 ALAANKSDLDSQR-EVPTEEGEQFSQENGMFYIETSAK-TAQNINELFYEIAKRLARVSP 176
            L ANK+DL  QR +V  +  + ++  N + + + SA    ++ +  F  IA    R   
Sbjct: 136 VLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYE 195

Query: 177 PKRSGIN 183
            K +   
Sbjct: 196 DKVAAFQ 202

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  224 bits (573), Expect = 2e-75
 Identities = 65/160 (40%), Positives = 99/160 (61%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+G+ G GKT L  RF +G F   Q  TIG  F  + + ++   VK  IWDTAGQER
Sbjct: 28  KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYR A A ++ YDI+  ++F    + ++E+++  +  V+  L  NK DL  +R
Sbjct: 88  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV  +  E+FS+   M+Y+ETSAK + N+ +LF ++A RL
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  223 bits (571), Expect = 5e-75
 Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 11/196 (5%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+++LGD G GKTSL  +++  +F +Q + TIGA F T+ + + +  V   IWDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI----VVMALAANKSDL 127
           + SL   +YRGA   V+V+D++  +TF   +    E   Q +          +  NK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129

Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL------ARVSPPKRSG 181
           ++++            +N + Y ETSAK A N+ + F  IA+          +       
Sbjct: 130 ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEP 189

Query: 182 INLNP-ETPERKGFCC 196
           I L+  E  +     C
Sbjct: 190 IKLDKNERAKASAESC 205

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  222 bits (569), Expect = 1e-74
 Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 11/196 (5%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+G+ G GK+ L LRF    + +    TIG  F  + + L   TVK  IWDTAGQER
Sbjct: 10  KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG+   ++VYD+++ ++FN     +QE+ R     V+  L  NK DL  +R
Sbjct: 70  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-----------ARVSPPKRS 180
            V  +  ++F+  N M ++ETSA  + N+ + F  +A+++                  + 
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKG 189

Query: 181 GINLNPETPERKGFCC 196
            +NL  ++    G CC
Sbjct: 190 NVNLKGQSLTNTGGCC 205

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  222 bits (569), Expect = 1e-74
 Identities = 55/202 (27%), Positives = 99/202 (49%), Gaps = 13/202 (6%)

Query: 1   MARP--GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT 58
           MA    G   +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63

Query: 59  VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM 118
           +KF++WDTAGQE++  L   YY  A  A++++D+++  T+       ++L R    I ++
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV 123

Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR----- 173
            L  NK D+  ++     +   F ++  + Y + SAK+  N  + F  +A++L       
Sbjct: 124 -LCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180

Query: 174 -VSPP--KRSGINLNPETPERK 192
            V+ P      + ++P    + 
Sbjct: 181 FVAMPALAPPEVVMDPALAAQY 202

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  220 bits (564), Expect = 3e-74
 Identities = 66/160 (41%), Positives = 105/160 (65%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++G+ GTGK+ L  +FI+ +F D    TIG  F ++I+++    VK  IWDTAGQER
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGAA A++VYDI++ +T+N     + + +   +Q +V+ L  NK DLD+ R
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV   E  +F+QEN + ++ETSA T +N+ E F + A+++
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  219 bits (560), Expect = 5e-74
 Identities = 80/167 (47%), Positives = 118/167 (70%), Gaps = 3/167 (1%)

Query: 8   IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
           +   KLVLLG+   GK+S+ LRF+   F + +EPTIGAAF TQ ++++E TVKF+IWDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSD- 126
           GQER+ SLAP YYR A AA+VVYD++   +F +A   V+EL  Q ++ +++AL  NK D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120

Query: 127 --LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
                +R+V  EEGE+ ++E G+ + ETSAKT +N+N++F  I +++
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  215 bits (549), Expect = 7e-72
 Identities = 64/171 (37%), Positives = 91/171 (53%), Gaps = 2/171 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLVL+GD   GKT +  RF  G F ++Q  TIG  F  + L +    VK  IWDTAGQER
Sbjct: 31  KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYR A  A++ YDI+   +F      ++++++     +V  L  NKSDL   R
Sbjct: 91  FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150

Query: 132 EVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRL-ARVSPPKRS 180
           EV   E +  ++    +  IETSAK + N+ E F  +A  L  R   P  S
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFS 201

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  215 bits (549), Expect = 7e-72
 Identities = 60/160 (37%), Positives = 95/160 (59%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 35  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA   +VVYD+++ ++FN   + +QE+ R  ++ V   L  NK DL +++
Sbjct: 95  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V     ++F+   G+ ++ETSAK A N+ + F  +A  +
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  214 bits (546), Expect = 2e-71
 Identities = 61/172 (35%), Positives = 98/172 (56%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GK+ L LRF    + +    TIG  F  + + L   T+K  IWDTAGQER
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA   +VVYD+++ ++FN   + +QE+ R  ++ V   L  NK DL +++
Sbjct: 78  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGIN 183
            V     ++F+   G+ ++ETSAK A N+ + F  +A  + +   P  +   
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 189

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  210 bits (537), Expect = 4e-70
 Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 5/165 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D+ E TIG  F  + + +    +K  +WDTAGQER
Sbjct: 22  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81

Query: 72  YH-SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ-IVVMALAANKSDLDS 129
           +  S+   YYR   A V VYD++NM +F+     ++E ++      +   L  NK DL S
Sbjct: 82  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTA---QNINELFYEIAKRL 171
             +VPT+  ++F+  + M   ETSAK      ++  +F  +A +L
Sbjct: 142 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  209 bits (535), Expect = 1e-69
 Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G+ G GK+SL LRF    F  +   TIG  F  + +S+     K  IWDTAGQER
Sbjct: 17  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ-IVVMALAANKSDLDSQ 130
           + +L P YYRGA   ++VYD++  DTF + +  + EL+    +  +V  L  NK D +  
Sbjct: 77  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-N 135

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           REV   EG +F++++ M +IE SAKT   +   F E+ +++
Sbjct: 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  209 bits (534), Expect = 1e-69
 Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+++GD G GK+SL LRF    F      TIG  F  + + ++   VK  IWDTAGQER
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG    +VVYD+++ ++F    + + E+ +  + +  + L  NK+D   ++
Sbjct: 71  FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRI-LVGNKNDDPERK 129

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V TE+  +F+ + G+   ETSAK   N+ E+F  I + +
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  209 bits (535), Expect = 1e-69
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL GD   GK+S  +R  K +F +    T+G  F  + L +        +WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD--- 128
           + S+A  Y+R A   +++YD++   +F    + V  ++   ++ V + L  NK+D+    
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149

Query: 129 ---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
               Q+ VP   GE+ +   G  + ETSAK   NI E    +A+ +
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  207 bits (530), Expect = 4e-69
 Identities = 56/160 (35%), Positives = 92/160 (57%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GKT +  RF +  F      TIG  F  + + L    +K  IWDTAGQER
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA   ++VYDI+N  +F+     ++ ++   +  V   +  NK D++ +R
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  E GE+ + + G+ ++ETSAK   N+   F+ +A+ +
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  207 bits (529), Expect = 7e-69
 Identities = 51/160 (31%), Positives = 84/160 (52%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+G+   GKTS   R+    F      T+G  F  + +   +  +K  IWDTAGQER
Sbjct: 24  KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA   +++YDI+N ++F        +++        + L  NK DL+ +R
Sbjct: 84  YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            VP E+G + + + G  + E SAK   N+ ++F  +   +
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  206 bits (527), Expect = 9e-69
 Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 7/167 (4%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQE 70
           K+++LGD G GKTSL  R++  ++  Q + TIGA F T+ +++  +      +WDTAGQE
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSD 126
           R+ SL   +YRGA   V+VYD++N  +F        E     N    +     +  NK D
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129

Query: 127 L-DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRL 171
             +S++ V  +  ++ ++  G +    TSAK A N++  F EIA+  
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  206 bits (527), Expect = 9e-69
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 6/165 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLGD G GK+SL  R++  +F  Q   TIG  F  + L +    V   IWDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
           + SL   +YRG+   ++ + + +  +F   +   +E     +    +     +  NK D+
Sbjct: 69  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128

Query: 128 DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRL 171
             +R+V TEE + + ++NG   Y ETSAK A N+   F E  +R+
Sbjct: 129 S-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  206 bits (527), Expect = 2e-68
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 7/189 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G+   GKTS   R+    F      T+G  F  + +  ++  +K  IWDTAG ER
Sbjct: 10  KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA   +++YDI+N ++FN       +++        + L  NK D++ +R
Sbjct: 70  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 129

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR-LARVS------PPKRSGINL 184
            V +E G Q +   G  + E SAK   N+ + F  +      ++S       P  +G   
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQ 189

Query: 185 NPETPERKG 193
            P+  +++ 
Sbjct: 190 GPQLTDQQA 198

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  206 bits (526), Expect = 2e-68
 Identities = 54/161 (33%), Positives = 96/161 (59%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +++++G  G GKTSL  RF    F +  + T+G  F  + + L    ++  IWDTAGQER
Sbjct: 28  QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           ++S+   YYR A   ++VYDI+  +TF+   K ++ + +  ++   + L  NK D ++ R
Sbjct: 88  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 147

Query: 132 EVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRL 171
           E+  ++GE+F+Q+  GM + E SAK   N++E+F ++   +
Sbjct: 148 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  205 bits (524), Expect = 2e-68
 Identities = 62/161 (38%), Positives = 93/161 (57%), Gaps = 1/161 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
           K++L+GD G GKT L +RF  G F       T+G  F  ++L +    VK  +WDTAGQE
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           R+ S+   YYR A A +++YD++N  +F+     + E+       V + L  NK D   +
Sbjct: 72  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R V  E+GE+ ++E G+ ++ETSAKT  N++  F  IAK L
Sbjct: 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  206 bits (526), Expect = 3e-68
 Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 2/168 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V+LG    GKTSLA +F++G+F +  +PT+    +++I++L +      + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVEN-TYSKIVTLGKDEFHLHLVDTAGQDE 84

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           Y  L   +  G    V+VY ++++ +F     L Q+L    G   V + L  NK+DL  +
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
           REV   EG++ ++  G  ++E+SA+  Q    +F ++ + +ARV    
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSY 192

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  205 bits (524), Expect = 5e-68
 Identities = 52/160 (32%), Positives = 86/160 (53%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+++G+   GKTS   R+    F      T+G  F  + +   E  VK  IWDTAGQER
Sbjct: 25  KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA   +++YDI+N ++FN       +++        + L  NK D++ +R
Sbjct: 85  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEER 144

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            VPTE+G+  +++ G  + E SAK   ++ + F  +   +
Sbjct: 145 VVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  204 bits (521), Expect = 6e-68
 Identities = 60/160 (37%), Positives = 97/160 (60%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+ L +RF++ +F      TIG  F  + + ++   VK  IWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA   ++VYDI++  TF    +  + +    N    + L  NKSD++  R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TR 123

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V  ++GE  ++E G+ +IE+SAK   N+NE+F+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  203 bits (519), Expect = 4e-67
 Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 10/190 (5%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+ L +RF++ +F      TIG  F  + + ++   VK  +WDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA   ++VYD+++  TF    +  + +    N    + L  NKSD++  R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TR 140

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR---------LARVSPPKRSGI 182
            V  ++GE  ++E G+ +IE+SAK   N+NE+F+ +AK          L  V   K   I
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNI 200

Query: 183 NLNPETPERK 192
           ++N  +    
Sbjct: 201 SINSGSGNSS 210

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  200 bits (512), Expect = 2e-66
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 2/171 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ +LG    GK+SL ++F++GQF D  +PTI   F   I +++       + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQDE 66

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           Y      Y       ++VY ++++ +F     +  +L    G   + + L  NK DL  +
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSG 181
           R +  EEG+  ++     ++E+SAK  Q   ++F  I     ++      G
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQG 177

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  201 bits (514), Expect = 3e-66
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 11/171 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL----------SEATVKF 61
           KL+ LGD G GKT+   R+   +F  +   T+G  F  + +                V  
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMAL 120
            +WDTAGQER+ SL   ++R A   ++++D+++  +F      + +LQ     +   + L
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NK+DL  QREV   +  + + + G+ Y ETSA T QN+ +    +   +
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  198 bits (506), Expect = 3e-65
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA----------TVKF 61
           K + LGD G GKTS+  ++  G+F  +   T+G  F  + +                +  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMAL 120
            +WDTAG ER+ SL   ++R A   ++++D++N  +F      + +LQ    ++   + L
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             NKSDL+ QR V  EE  + +++ G+ Y ETSA    NI+     +   +
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  196 bits (501), Expect = 7e-65
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 2/160 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+G+ G GK++LA  F   Q     E       + + + + +  V   ++D   Q  
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 72  YHSLAP-MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDS 129
                     +   A ++V+ +++  +F++  + +  L+    +  + + L  NKSDL  
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
            REV  EEG   +      +IETSA    N  ELF    +
Sbjct: 124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  197 bits (504), Expect = 8e-65
 Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 6/191 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  EPT   ++  ++  L    V+ DI DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQED 74

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           Y ++   Y+R     + V+ I+ M++F       +++ R   ++ V   L  NKSDL+ +
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRLARVSPPKRSGINLNP 186
           R+V  EE +  +++  + Y+ETSAKT  N++++F+    EI  R    S  K        
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKS 194

Query: 187 ETPERKGFCCL 197
                +  CC+
Sbjct: 195 LAKRIRERCCI 205

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  196 bits (500), Expect = 2e-64
 Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
            K  + KL + G  G GK++L +RF+  +F  + +PT+ + +  Q  ++ +  V  +I D
Sbjct: 24  AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILD 82

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANK 124
           TAGQE        + R     V+VYDI++  +F     L   L      + V + L  NK
Sbjct: 83  TAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNK 141

Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAKRLAR 173
           +DLD  R+V TEEGE+ + E    + E SA T + NI E+FYE+ + + R
Sbjct: 142 ADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  195 bits (498), Expect = 3e-64
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+G+ G GK++LA  F   Q     EP      + + + + +  V   ++D   Q  
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 72  YHSLAPM---YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDL 127
                 +     +   A ++V+ +++  +F++  + +  L+    +  + + L  NKSDL
Sbjct: 85  AG--GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142

Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
              REV  EEG   +      +IETSA    N  ELF    +
Sbjct: 143 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  194 bits (495), Expect = 6e-64
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 4/180 (2%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
           M  P ++    KLV++G  G GK++L ++FI+  F    +PTI    +T+I S+     +
Sbjct: 2   MDPPPSETH--KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED-SYTKICSVDGIPAR 58

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMA 119
            DI DTAGQE + ++   Y R     ++V+ I++  +FN   KL  ++ R        + 
Sbjct: 59  LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118

Query: 120 LAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR 179
           L  NK+DL+SQR+VP  E   F   + + Y E SAK   N++E F ++ + + +    + 
Sbjct: 119 LVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  193 bits (493), Expect = 2e-63
 Identities = 50/163 (30%), Positives = 97/163 (59%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  EPT   ++  ++  L    V+ DI DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQED 78

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y+R     + V+ I+ M++F       +++ R + ++ V   L  NKSDL+ +
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R+V  EE +  +++  + Y+ETSAKT  N++++F+++ + +  
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  191 bits (487), Expect = 1e-62
 Identities = 50/159 (31%), Positives = 94/159 (59%), Gaps = 2/159 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  EPT   ++  ++  L    V+ DI DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQED 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           Y ++   Y+R     + V+ I+ M++F       +++ R   ++ V   L  NKSDL+ +
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
           R+V  EE +  + +  + Y+ETSAKT  N++++F+++ +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  190 bits (485), Expect = 2e-62
 Identities = 52/163 (31%), Positives = 95/163 (58%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V+LG  G GK++L ++F+ G F ++ +PTI   F+ + + +  +    +I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           + S+  +Y +     ++VY + N  +F     +  ++ R    + V + L  NK DL+S+
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           REV + EG   ++E G  ++ETSAK+   ++ELF EI +++  
Sbjct: 124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  188 bits (481), Expect = 7e-62
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 3/164 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++ + G  G GK+SL LRF+KG F +   PT+    + Q++S  ++     I DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED-TYRQVISCDKSICTLQITDTTGSHQ 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANKSDLDS 129
           + ++  +      A ++VY I++  +      + +++       + + + L  NK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
            REV + E E  ++     ++ETSAK   N+ ELF E+     R
Sbjct: 124 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 167

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  187 bits (478), Expect = 2e-61
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLG  G GK++LA  F  G     +    G   + + + +        ++D   Q+ 
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGH-TYDRSIVVDGEEASLMVYDIWEQDG 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
              L         A V+VY +++  +F +A++L  +L+R +    V + L  NKSDL   
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
           REV  +EG   +      +IETSA    N+  LF  + +
Sbjct: 122 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  188 bits (480), Expect = 2e-61
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 6/190 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++V+ G  G GK+SL LRF+KG F D   PTI    + Q++S  ++     I DT G  +
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIED-TYRQVISCDKSVCTLQITDTTGSHQ 68

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANKSDLDS 129
           + ++  +      A ++V+ +++  +      + + + +     + + + L  NK D   
Sbjct: 69  FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET- 127

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK--RLARVSPPKRSGINLNPE 187
           QREV T E +  +QE    ++ETSAK   N+ ELF E+        +S       +   +
Sbjct: 128 QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQK 187

Query: 188 TPERKGFCCL 197
             +R    C 
Sbjct: 188 RTDRVKGKCT 197

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  186 bits (476), Expect = 5e-61
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++VLLGD G GKTSLA  F   Q  D  E       + + L++        + DT   E+
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-EDVYERTLTVDGEDTTLVVVDTWEAEK 64

Query: 72  YHSLAPM--YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLD 128
                      +G +A V+VY I++  +F  A++L  +L+R      V + L  NK+DL 
Sbjct: 65  LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
             REV  EEG   +      +IETSA    N+ ELF  + +
Sbjct: 125 RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  185 bits (471), Expect = 4e-60
 Identities = 55/187 (29%), Positives = 101/187 (54%), Gaps = 5/187 (2%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q+  +   T   DI DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQEE 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           Y ++   Y R     + V+ I+N  +F   +   ++++R   ++ V M L  NK DL   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-S 123

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPE 190
           R V T++ +  ++  G+ +IETSAKT Q +++ FY + + + +    ++   +   +  +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH--KEKMSKDGKKKKKK 181

Query: 191 RKGFCCL 197
            K  C +
Sbjct: 182 SKTKCVI 188

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  183 bits (466), Expect = 2e-59
 Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++GD G GK++L ++F +  F D  +PTI    + +   +       D+ DTAGQE 
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIED-SYLKHTEIDNQWAILDVLDTAGQEE 78

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           + ++   Y R     ++VY +++  +F   ++  Q + R    +   M L ANK DL   
Sbjct: 79  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAKRLAR 173
           R+V  ++G++ + +  + YIETSAK    N+++ F+++ + + +
Sbjct: 139 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  182 bits (464), Expect = 2e-59
 Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q+  +   T   DI DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQV-VIDGETCLLDILDTAGQEE 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           Y ++   Y R     + V+ I+N  +F   ++  ++++R   +  V M L  NKSDL   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-A 122

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V + + +  ++  G+ YIETSAKT Q + + FY + + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  181 bits (461), Expect = 9e-59
 Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 13/174 (7%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
             I + +L +LGD  +GK+SL  RF+ G +    E T     + + + +   T    I +
Sbjct: 3   RSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTES-EQYKKEMLVDGQTHLVLIRE 60

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-----QGNQIVVMAL 120
            AG          +   A A + V+ + + ++F   ++L  +L       +G   + +  
Sbjct: 61  EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115

Query: 121 AANKSDLDSQREVPTEEGEQF-SQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
             ++    S R V         +      Y ET A    N++ +F E+A+++  
Sbjct: 116 TQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  191 bits (486), Expect = 1e-58
 Identities = 30/175 (17%), Positives = 65/175 (37%), Gaps = 12/175 (6%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA--------TVKF 61
           + K+ L+GD   GKTSL  + I   F  ++  T G    T+     +            F
Sbjct: 41  EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALA 121
             WD  GQE  H+    +   ++  +++ D     T +  +  ++ +++ G +  V+ + 
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPVI-VV 156

Query: 122 ANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
            NK D +    +  ++  +        +   S K    +  +   +   +     
Sbjct: 157 MNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDS 211

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  179 bits (457), Expect = 3e-58
 Identities = 52/164 (31%), Positives = 97/164 (59%), Gaps = 3/164 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F ++ +PTI  ++  Q+  +       +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           + ++  +Y +      +VY I+   TFN    L +++ R    + V M L  NK DL+ +
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 131 REVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V  E+G+  +++     ++E+SAK+  N+NE+FY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  180 bits (458), Expect = 4e-58
 Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 3/170 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q+  +   T   DI DTAGQE 
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQEE 81

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           Y ++   Y R     + V+ I+N  +F   N   ++++R + +  V M L  NK DL   
Sbjct: 82  YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-T 140

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
           R V T++  + ++  G+ +IETSAKT Q + + FY + + + +    K +
Sbjct: 141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLN 190

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  178 bits (453), Expect = 2e-57
 Identities = 31/176 (17%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYD--QQEPTIGAAFFTQILSL---SEATVKFDIW 64
           + KL+++G+ G+GKT+L  + +K +  D   Q  T+G       + +    +  +  ++W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT-FNRANKLVQELQRQGNQIVVMALAAN 123
           D AG+E ++S  P +    A  + VYD+S      +     +  ++ + +   V+ L   
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI-LVGT 120

Query: 124 KSDLDSQRE---VPTEEGEQFSQENGM-----FYIETSAKTAQNINELFYEIAKRL 171
             D+  +++     ++  ++   + G      ++   + + +  + +L   I    
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  178 bits (453), Expect = 2e-57
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 6/168 (3%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           +  L +LG  G GK++L ++F+  +F  + +P +   + ++  ++    V   + DTA  
Sbjct: 21  EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADL 79

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ---GNQIVVMALAANKSD 126
           +   +    Y   A A +VVY + +  +F+ ++  ++ L        + +   L  NK D
Sbjct: 80  DTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138

Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKT-AQNINELFYEIAKRLAR 173
           +   R+V   EG   +   G  + E SA    +++  +F+E  +   R
Sbjct: 139 MAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  176 bits (449), Expect = 1e-56
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 9/174 (5%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQ--FYDQQEPTIGAAFFTQILSL---SEATVKFDIWDT 66
           ++VL+G+ G GK++LA  F           E       + + L +   S   +  D+W+ 
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGESATIILLDMWEN 97

Query: 67  AGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKS 125
            G+  +  L     +   A ++VY I++  +F +A++L  +L+R    + + + L  NKS
Sbjct: 98  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155

Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR 179
           DL   REV   EG   +      +IETSA    N+ ELF  I +++      K 
Sbjct: 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  173 bits (441), Expect = 2e-55
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 7/186 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSL---SEATVKFDIWDTA 67
           ++VL+G+ G GK++LA  F       D     +G   + + L +   S   +  D+W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSD 126
           G+  +  L     +   A ++VY I++  +F +A++L  +L+R    + + + L  NKSD
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125

Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNP 186
           L   REV   EG   +      +IETSA    N+ ELF  I +++      K        
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLA 185

Query: 187 ETPERK 192
               ++
Sbjct: 186 YQKRKE 191

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  166 bits (423), Expect = 7e-53
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 11/166 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ ++G++ +GK++L  R++ G +  ++ P  G   F + + +   +    I D  G   
Sbjct: 22  KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLD-- 128
                  +     A V V+ + +  +F         L        V M L   +  +   
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAA 134

Query: 129 SQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
           + R +      + S +     Y ET A    N+  +F ++A+++  
Sbjct: 135 NPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  139 bits (352), Expect = 5e-42
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 8/172 (4%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V++GD   GKT L L F KG+      PT+   F   +           +WDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVM-KYKNEEFILHLWDTAGQEE 83

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL--D 128
           Y  L P+ Y  +   ++ + ++N  +F N + K   E++   +    + L   K DL  D
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKD 142

Query: 129 SQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRLARVSPPKR 179
              +V  +EG+   Q+ G + YIE S+     +NE+F +        S    
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD--CIFSNKPV 192

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  137 bits (346), Expect = 5e-41
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 15/196 (7%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V +GD   GKT + + +   +F     PT+   F   + ++    V   +WDTAGQE 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQED 69

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL--- 127
           Y  L P+ YRGA   V+ + + +  ++ N   K + EL R+    V + L   K DL   
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL-RRFAPNVPIVLVGTKLDLRDD 128

Query: 128 -----DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPPKRSG 181
                D    + + +GE+  ++ G   YIE S+KT QN+  +F   A ++    P ++  
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDT-AIKVVLQPPRRKE- 186

Query: 182 INLNPETPERKGFCCL 197
                    R+  C +
Sbjct: 187 -VPRRRKNHRRSGCSI 201

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  132 bits (335), Expect = 2e-39
 Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 18/183 (9%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GKTSL + F  G F +   PT+   +   +  +    V   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQDD 94

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL--- 127
           Y  L P++Y  A+  ++ +D+++ ++F N  N+   E+     ++ ++ +   K+DL   
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII-VVGCKTDLRKD 153

Query: 128 ---------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRLARVSPP 177
                    +    V    G++ ++  G + Y+E SA+   N++ +F E A+    +S  
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE--VALSSR 211

Query: 178 KRS 180
            R+
Sbjct: 212 GRN 214

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  130 bits (329), Expect = 8e-39
 Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 14/176 (7%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           +     K V +GD   GKT L + +    F     PT+   F   +  ++ ATV   +WD
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV-VVNGATVNLGLWD 62

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANK 124
           TAGQE Y+ L P+ YRGA   ++ + + +  ++ N + K + EL+     + ++ L   K
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV-LVGTK 121

Query: 125 SDL----------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAK 169
            DL               + T +GE+  +  G   YIE S+K+ +N+  +F    +
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  131 bits (330), Expect = 8e-39
 Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 16/175 (9%)

Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L + F K QF +   PT+    +   + +    V+  +WDTAG
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYIADIEVDGKQVELALWDTAG 82

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
           QE Y  L P+ Y      ++ + I + D+  N   K   E++     + ++ L  NK DL
Sbjct: 83  QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 141

Query: 128 ------------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAK 169
                         Q  V +EEG   +       Y+E SAKT + + E+F    +
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  129 bits (325), Expect = 7e-38
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 16/190 (8%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
              +I+ KLV++GD   GKT L + F K +F +   PT+   +   I  +    V+  +W
Sbjct: 20  FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALW 78

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN 123
           DTAGQE Y  L P+ Y      ++ + + + D+  N   K V E+ +     V + L AN
Sbjct: 79  DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVAN 137

Query: 124 KSDL------------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKR 170
           K DL              Q  V T++G   +       Y+E SAKT + + E+F    + 
Sbjct: 138 KKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197

Query: 171 LARVSPPKRS 180
             +     ++
Sbjct: 198 ALQKRYGSQN 207

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  128 bits (324), Expect = 7e-38
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 16/172 (9%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   +  +    V   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVNLGLWDTAGQED 90

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL--- 127
           Y  L P+ Y      ++ + + +  +F N   K   E+ R       + L   K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDD 149

Query: 128 ---------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAK 169
                         +   +G   ++E G + Y+E SA T + +  +F E  +
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  126 bits (319), Expect = 4e-37
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 17/191 (8%)

Query: 3   RPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFD 62
             G +    K VL+GD   GKTSL + +    +  +  PT    F   + S+    V+  
Sbjct: 13  AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVV-SVDGRPVRLQ 71

Query: 63  IWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALA 121
           + DTAGQ+ +  L P+ Y      ++ + + +  +F N + K V E+ R       + L 
Sbjct: 72  LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILV 130

Query: 122 ANKSDL------------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIA 168
             +SDL              ++ VP E  +  ++E     YIE SA T +N+ E+F   A
Sbjct: 131 GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA-A 189

Query: 169 KRLARVSPPKR 179
                     +
Sbjct: 190 IVAGIQYSDTQ 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  124 bits (314), Expect = 1e-36
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 18/182 (9%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+   +   +  +    V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVNLGLWDTAGQED 65

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL--- 127
           Y  L P+ Y     +++ + + +  +F N   K   E+ R       + L   K DL   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDD 124

Query: 128 ---------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRLARVSPP 177
                         +   +G   ++E G + Y+E SA T + +  +F E  +  A + PP
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR--AVLCPP 182

Query: 178 KR 179
             
Sbjct: 183 PV 184

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  122 bits (308), Expect = 1e-35
 Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 17/180 (9%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
            N+ ++ K+V++GD   GKT+L   F K  F +   PT+   +      +    ++  +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN 123
           DT+G   Y ++ P+ Y  + A ++ +DIS  +T  +   K   E+Q       ++ L   
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGC 119

Query: 124 KSDL------------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQN-INELFYEIAK 169
           KSDL              Q  V  ++G   +++ G   YIE SA  ++N + ++F+    
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 179

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  119 bits (299), Expect = 3e-34
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 4   PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAF--FTQILSLSEATVKF 61
            G   +  K V++GD   GKT L + +    F ++  PT+   F  +   +++       
Sbjct: 12  HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV---FDHYAVSVTVGGKQYLL 68

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMAL 120
            ++DTAGQE Y  L P+ Y      ++ + + N  +F N   + V EL ++    V   L
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPFLL 127

Query: 121 AANKSDL------------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEI 167
              + DL              ++ +  E+G++ ++E G   Y+E SA T + +  +F E 
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187

Query: 168 AK 169
             
Sbjct: 188 II 189

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  117 bits (295), Expect = 2e-33
 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAF--FTQILSLSEATVKFDI 63
           N+ ++ K+V++GD   GKT+L   F K  F +   PT+   F  +T    +    ++  +
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSL 80

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAA 122
           WDT+G   Y ++ P+ Y  + A ++ +DIS  +T  +   K   E+Q       ++ L  
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVG 139

Query: 123 NKSDL------------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQN-INELFYEIA 168
            KSDL              Q  V  ++G   +++ G   YIE SA  ++N + ++F  +A
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF-HVA 198

Query: 169 KRLA 172
               
Sbjct: 199 TLAC 202

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  117 bits (295), Expect = 2e-33
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 19/191 (9%)

Query: 4   PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
           P   + + KLVL+GD+  GKT++     K  + +   PT+   +   +    E  V+  +
Sbjct: 21  PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACL-ETEEQRVELSL 79

Query: 64  WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKL-VQELQRQGNQIVVMALAA 122
           WDT+G   Y ++ P+ Y  + A ++ +DIS  +T + A K    E+        V+ L  
Sbjct: 80  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL-LIG 138

Query: 123 NKSDL------------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQ-NINELFYEIA 168
            K+DL              Q  +  E+G   +++ G   Y+E SA T++ +I+ +F   +
Sbjct: 139 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTAS 198

Query: 169 KRLARVSPPKR 179
                ++ P  
Sbjct: 199 M--LCLNKPSP 207

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 99.3 bits (247), Expect = 7e-26
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 9/149 (6%)

Query: 29  RFIKGQFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTAGQERY--HSLAPMYYRGA 83
            FI  Q +     T    +  +  +    S   + +   D  G E+       P      
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163

Query: 84  AAAVVVYDISNMD--TFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVPTEEGEQ 140
              ++  D+S      F+   K V  L  Q  +    + +   K D   +R +       
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223

Query: 141 FSQENGMFYIETSAKTAQNINELFYEIAK 169
            S++N +  +ETSA++  N++  F  + +
Sbjct: 224 LSKKN-LQVVETSARSNVNVDLAFSTLVQ 251

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 89.4 bits (222), Expect = 1e-22
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 27/197 (13%)

Query: 1   MA--RPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYD-----------QQEPTIGAAF 47
           M+     N+ I  K+V  G   +GKT+  L++I  +  +           + E T+   F
Sbjct: 3   MSTINFANREINFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDF 61

Query: 48  FT-QILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA---NK 103
               I  +     +F ++   GQ  Y++   +  RG    V V D +       A     
Sbjct: 62  LPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRN 121

Query: 104 LVQELQRQGNQI--VVMALAANKSDLDSQREVPTEE-GEQFSQENGMFYIETSAKTAQNI 160
           + + L   G  +  V + +  NK DL     +P E        E     +E  A   + +
Sbjct: 122 MRENLAEYGLTLDDVPIVIQVNKRDL--PDALPVEMVRAVVDPEGKFPVLEAVATEGKGV 179

Query: 161 NE----LFYEIAKRLAR 173
            E    +   +  R+A 
Sbjct: 180 FETLKEVSRLVLARVAG 196

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 83.5 bits (206), Expect = 2e-19
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 22/193 (11%)

Query: 1   MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
                      K V++GD   GKT L + +    F  +  PT+   +   +  +    V 
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVN 204

Query: 61  FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQR--QGNQIVV 117
             +WDTAG E Y  L P+ Y      ++ + + +  +F +   K   E++       I+ 
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII- 263

Query: 118 MALAANKSDL------------DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELF 164
             L   K DL                 +   +G   ++E G + Y+E SA T + +  +F
Sbjct: 264 --LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

Query: 165 YEIAKRLARVSPP 177
            E  +  A + PP
Sbjct: 322 DEAIR--AVLCPP 332

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 26/180 (14%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQ----EPTIGAAFFTQILSLSEATVKFDIWDTA 67
           +++L+G   +GK+S+  + +  +    +    E T       +    + + V F IWD  
Sbjct: 22  RILLMGLRRSGKSSI-QKVVFHKMSPNETLFLESTNK---IYKDDISNSSFVNFQIWDFP 77

Query: 68  GQERYHSLAP---MYYRGAAAAVVVYDISN--MDTFNRANKLVQELQRQGNQIVVMALAA 122
           GQ  +        M +RG  A + V D  +  M+   R +  V +  +    +       
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF-I 136

Query: 123 NKSDL-------DSQREVPTEEGEQFSQEN----GMFYIETSAKTAQNINELFYEIAKRL 171
           +K D        ++QR++     +  +        + +  TS     +I E F ++ ++L
Sbjct: 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 72.3 bits (177), Expect = 1e-15
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 25/183 (13%)

Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ----EPTIGAAFFTQILSLSEATVKFDIW 64
           + +KL+L+G  G+GK+S+    I   +          TI               +  ++W
Sbjct: 2   LGSKLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATID---VEHSHLRFLGNMTLNLW 57

Query: 65  DTAGQERY-----HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQ--RQGNQIVV 117
           D  GQ+ +            ++     + V+D+ + +         + L+  R+ +    
Sbjct: 58  DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK 117

Query: 118 MALAANKSDL--DSQREVPTEEGEQFSQE-------NGMFYIETSAKTAQNINELFYEIA 168
           + +  +K DL    +RE   +   +   E         +    TS    +++ + + +I 
Sbjct: 118 IFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIV 176

Query: 169 KRL 171
             L
Sbjct: 177 CSL 179

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 19/173 (10%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +L++LG    GKT++ L+   G+  D   PT+G   F  I +L     K +IWD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTI-LKKFNGEDVDTISPTLG---F-NIKTLEHRGFKLNIWDVGGQ 72

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKS 125
           +   S    Y+      + V D ++             L+ E +  G  +++    ANK 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF---ANKQ 129

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKRL 171
           DL    S   +         + +       SA T +++      L  +I+ R+
Sbjct: 130 DLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 63.0 bits (154), Expect = 7e-13
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 17/172 (9%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + ++++LG  G GKT++ L  ++       +PTIG   F  + +LS   +K ++WD  GQ
Sbjct: 18  ELRILILGLDGAGKTTI-LYRLQIGEVVTTKPTIG---FN-VETLSYKNLKLNVWDLGGQ 72

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKS 125
                    YY   AA + V D ++ D  + A    + ++QE + Q   ++V    ANK 
Sbjct: 73  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF---ANKQ 129

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYIE-TSAKTAQNINELFYEIAKRLAR 173
           D     S  EV ++E      ++  + I  +SA   + I E    +   +  
Sbjct: 130 DQPGALSASEV-SKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 20/173 (11%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +L L+G   +GKT+       GQF +   PT+G   F  +  +++  V   +WD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG---FN-MRKITKGNVTIKLWDIGGQ 77

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKS 125
            R+ S+   Y RG +A V + D ++ +    +    + L+ + Q QG  ++V+    NK 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 134

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYI-ETSAKTAQNINE----LFYEIAKR 170
           DL     ++E+  E+    + ++        S K   NI+     L      R
Sbjct: 135 DLPGALDEKEL-IEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 19/178 (10%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + K++++G    GKT++ L            PTIG      +  +     +F +WD  GQ
Sbjct: 16  EHKVIIVGLDNAGKTTI-LYQFSMNEVVHTSPTIG---SN-VEEIVINNTRFLMWDIGGQ 70

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKS 125
           E   S    YY      +VV D ++ +  +       K++     +   +++    ANK 
Sbjct: 71  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF---ANKQ 127

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKRLARVSP 176
           D+    +  E+         +++        A T + + +    +   +  RL     
Sbjct: 128 DVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHHHH 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 21/177 (11%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
             +  + ++++LG  G GKT++ L  ++        PTIG   F  + +++   +KF +W
Sbjct: 4   MTR--EMRILILGLDGAGKTTI-LYRLQVGEVVTTIPTIG---FN-VETVTYKNLKFQVW 56

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMAL 120
           D  G          YY    A + V D  + D    +      +++E + +   +VV   
Sbjct: 57  DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF-- 114

Query: 121 AANKSDLD---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKR 170
            ANK D++   +  E+    G    ++      +TSA     ++E    L   +  R
Sbjct: 115 -ANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 19/172 (11%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + ++++LG    GKTS+  R   G       PT+G      + +L    + F++WD  GQ
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVG---VN-LETLQYKNISFEVWDLGGQ 76

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKS 125
                    Y+    A + V D ++ D    A      L+ E + + + +++    ANK 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIF---ANKQ 133

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKR 170
           DL    S+ E+  + G           +++S+KT   + E    L   + ++
Sbjct: 134 DLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 19/172 (11%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           Q +++++G    GKT++ L  +K        PTIG      + ++    + F +WD  GQ
Sbjct: 29  QMRILMVGLDAAGKTTI-LYKLKLGEIVTTIPTIGF----NVETVEYKNICFTVWDVGGQ 83

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKS 125
           ++   L   Y++     + V D ++ +    +     K++QE + +   ++V    ANK 
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVF---ANKQ 140

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKR 170
           D+       E+  + G Q  +    +   T A     + +    L +E++KR
Sbjct: 141 DMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 15/173 (8%)

Query: 10  QAKLVLLG-DMGTGKTSLALRFIKGQFYDQQ-EPTIGAAFFTQILSLSEATVKFDIWDTA 67
           +  ++ LG D  +GKT++  +        Q   PTIG   F+ I     +++ F ++D +
Sbjct: 21  EVHVLCLGLD-NSGKTTIINKLKPSNAQSQNILPTIG---FS-IEKFKSSSLSFTVFDMS 75

Query: 68  GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAAN 123
           GQ RY +L   YY+   A + V D S+      A    + L+     +  +I ++   AN
Sbjct: 76  GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF-AN 134

Query: 124 KSDLD---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           K DL    +  +V      +  ++       + A   + + E    +  ++  
Sbjct: 135 KMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 35/169 (20%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +++++G    GKT++ L  +K        PTIG   F  + ++    + F +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTI-LYKLKLGEIVTTIPTIG---F-NVETVEYKNISFTVWDVGGQDK 56

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKSDL 127
              L   Y++     + V D ++ +  N A     +++ E + +   ++V    ANK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF---ANKQDL 113

Query: 128 D---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
               +  E+  + G    +    +   T A +   + E    ++ +L  
Sbjct: 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 15/171 (8%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +++LLG    GKT+L L+ +  +      PT G   F  I S+     K ++WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTL-LKQLASEDISHITPTQG---FN-IKSVQSQGFKLNVWDIGGQ 70

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKS 125
            +       Y+      + V D ++   F        +L++E +     +++    ANK 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIF---ANKQ 127

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           DL       E+         ++        SA T + + +    + K +  
Sbjct: 128 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 58.0 bits (141), Expect = 5e-11
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + K++++G    GKT++  +F   +      PTIG      +  +     +F +WD  GQ
Sbjct: 21  EHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG---SN-VEEIVINNTRFLMWDIGGQ 75

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKS 125
           E   S    YY      +VV D ++ +  +       K++     +   +++    ANK 
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF---ANKQ 132

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINE 162
           D+    +  E+         +++        A T + + +
Sbjct: 133 DVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 24/168 (14%)

Query: 10  QAKLVLLG-DMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
             KL+ LG D   GKT+L L  +K       +PT      T    L+   +KF  +D  G
Sbjct: 23  HGKLLFLGLD-NAGKTTL-LHMLKNDRLATLQPTWH---PT-SEELAIGNIKFTTFDLGG 76

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANK 124
             +   L   Y+      V + D ++ + F+ A    + L    + +    V++    NK
Sbjct: 77  HIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVIL---GNK 133

Query: 125 SDLD---SQREV------PTEEGEQFSQENGMFYI-ETSAKTAQNINE 162
            D     S+ E+          G Q  +      +   S        E
Sbjct: 134 IDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 181

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 31/174 (17%)

Query: 10  QAKLVLLG-DMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
             KLV LG D   GKT+L L  +K     Q  PT+     T    L+ A + F  +D  G
Sbjct: 25  TGKLVFLGLD-NAGKTTL-LHMLKDDRLGQHVPTLH---PT-SEELTIAGMTFTTFDLGG 78

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANK 124
             +   +   Y       V + D ++ +    +    + L+ +       I+++    NK
Sbjct: 79  HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL---GNK 135

Query: 125 SDLD---SQREVPTEEGEQFSQENGMFYIE-------------TSAKTAQNINE 162
            D     S+  +  E    + Q  G   +               S    Q   E
Sbjct: 136 IDRPEAISEERL-REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           Q  ++ +G   +GKT L +R + GQ+ D Q  +I  +        +       + D  G 
Sbjct: 7   QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAI-YKVNNNRGNSLTLIDLPGH 64

Query: 70  ERY-HSLAPMYYRGAAAAVVVYDISNMDTFNRANK-----LVQELQRQGNQIVVMALAAN 123
           E     L   +   A A V V D +      +        ++ +     N   ++ +A N
Sbjct: 65  ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL-IACN 123

Query: 124 KSDL 127
           K D+
Sbjct: 124 KQDI 127

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 57.0 bits (137), Expect = 4e-10
 Identities = 29/175 (16%), Positives = 64/175 (36%), Gaps = 20/175 (11%)

Query: 13  LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72
           ++L+G    GK+S+  + +           + +     +   S   +   + +  GQ  Y
Sbjct: 2   VLLMGVRRCGKSSI-CKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNY 59

Query: 73  HSLA---PMYYRGAAAAVVVYDISN--MDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
              +      ++   A V V D  +  ++       +++   +    I +  L  +K D 
Sbjct: 60  FEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVL-IHKVDG 118

Query: 128 -------DSQREVPTEEGEQFSQENG----MFYIETSAKTAQNINELFYEIAKRL 171
                  D+QR++    GE+  +       + +  TS     +I E F  I ++L
Sbjct: 119 LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 15/127 (11%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           Q  +++ G   +GKTSL               +        + +         + D  G 
Sbjct: 48  QPSIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQE-----PLSAADYDGSGVTLVDFPGH 101

Query: 70  ERYHSLAPMYYRGAAAAV--VVYDI-SNMDTFNRA------NKLVQELQRQGNQIVVMAL 120
            +       Y +  A  V  +++ + S +D             ++   +      + + +
Sbjct: 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 161

Query: 121 AANKSDL 127
           A NKS+L
Sbjct: 162 ACNKSEL 168

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 52.5 bits (126), Expect = 7e-09
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 15/131 (11%)

Query: 6   NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
            K  Q  +++ G   +GKTSL               +        + +         + D
Sbjct: 8   QKSYQPSIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQEP-----LSAADYDGSGVTLVD 61

Query: 66  TAGQERYHSLAPMYYRGAAAAV--VVYDI-SNMDTFNRA------NKLVQELQRQGNQIV 116
             G  +       Y +  A  V  +++ + S +D             ++   +      +
Sbjct: 62  FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 121

Query: 117 VMALAANKSDL 127
            + +A NKS+L
Sbjct: 122 DILIACNKSEL 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-07
 Identities = 21/189 (11%), Positives = 59/189 (31%), Gaps = 19/189 (10%)

Query: 19  MGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILS-----LSEATVKFDIWDTAGQERYH 73
           + +         +      +QE  +   F  ++L      L           +     Y 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 74  SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV--MALAANKSDLDSQR 131
                 Y         Y++S +  + +  + + EL+   N +++  +   + K+ +    
Sbjct: 114 EQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVL-GSGKTWVAL-- 168

Query: 132 EVPTEEGEQFSQENGMFYI-----ETSAKTAQNINELFYEIAKRL-ARVSPPKRSGINLN 185
           +V      Q   +  +F++      +     + + +L Y+I     +R        + ++
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 186 PETPERKGF 194
               E +  
Sbjct: 229 SIQAELRRL 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 52/209 (24%)

Query: 3   RPGNKIIQAKLVLLGDMGTGKTSLAL----------RFIKGQFY--------DQQEPTIG 44
           RP   +     ++ G +G+GKT +AL          +     F+         +    + 
Sbjct: 148 RPAKNV-----LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 45  AAFFTQI------LSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV---VYDISNM 95
                QI       S   + +K  I     + R    +  Y       +V   V +    
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQNAKAW 259

Query: 96  DTFN-RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ-FSQENGMFYIETS 153
           + FN     L+    R   + V   L+A          +  +      + +      E  
Sbjct: 260 NAFNLSCKILL--TTR--FKQVTDFLSAAT-----TTHISLDHHSMTLTPD------EVK 304

Query: 154 AKTAQNINELFYEIAKRLARVSPPKRSGI 182
           +   + ++    ++ + +   +P + S I
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSII 333

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 47.2 bits (112), Expect = 9e-07
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 21/173 (12%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +++++G    GKT++ L  +K        PTIG   F  + ++    + F +WD  GQ
Sbjct: 165 EMRILMVGLDAAGKTTI-LYKLKLGEIVTTIPTIG---FN-VETVEYKNISFTVWDVGGQ 219

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA----NKLVQELQRQGNQIVVMALAANKS 125
           ++   L   Y++     + V D ++ +  N A     +++ E + +   ++V    ANK 
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF---ANKQ 276

Query: 126 DLD---SQREVPTEEGEQFSQENGMFYIE-TSAKTAQNINE----LFYEIAKR 170
           DL    +  E+ T++    S  +  +YI+ T A +   + E    L  ++  +
Sbjct: 277 DLPNAMNAAEI-TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 89  VYDISNMDTFNRANKLVQELQRQGN------QIVVMALAANKSDLDSQREVPTEEGEQFS 142
           V D ++ +       L +E+            +V      NK DL  +  V  +      
Sbjct: 242 VLDAAD-EPLKTLETLRKEVGAYDPALLRRPSLVA----LNKVDLLEEEAV--KALADAL 294

Query: 143 QENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPERKGF 194
              G+  +  SA T   +  L   +   +    PP+       P    + G 
Sbjct: 295 AREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMP--KPVPRKEVQAGV 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.98
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.98
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.98
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.98
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.98
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.89
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.88
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.83
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.83
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.81
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.8
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.79
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.79
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.78
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.78
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.77
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.77
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.74
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.7
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.68
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.67
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.64
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.63
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.62
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.6
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.6
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.59
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.54
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.5
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.5
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.49
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.48
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.47
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.47
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.42
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.35
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.35
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.34
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.04
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.03
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.98
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.95
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.9
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.86
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.8
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.63
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.58
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.54
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.36
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.29
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.28
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.28
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.23
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.21
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.12
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.1
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.01
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.85
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.78
2xxa_A	433	Signal recognition particle protein; protein trans	97.65
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.65
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.58
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.52
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.47
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.47
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.44
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.44
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.41
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.4
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.4
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.38
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.37
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.35
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.35
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.34
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.33
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.33
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.3
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.3
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.29
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.29
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.27
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.27
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.26
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.26
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.26
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.25
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.24
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.23
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.21
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.21
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.2
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.2
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.2
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.18
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.17
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.17
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.17
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.16
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.16
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.16
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.15
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.15
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.15
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.15
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.15
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.15
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.14
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.13
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.13
1g6h_A	257	High-affinity branched-chain amino acid transport	97.13
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.11
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.11
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.11
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.11
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.1
3co5_A	143	Putative two-component system transcriptional RES	97.1
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.1
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.1
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.09
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.09
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.09
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.09
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.08
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.08
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.08
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.08
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.08
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.08
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.07
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.07
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.07
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.06
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.06
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.06
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.05
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.05
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.04
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.04
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.04
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.03
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.02
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.01
1via_A	175	Shikimate kinase; structural genomics, transferase	97.01
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.01
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.01
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.0
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.0
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.99
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.99
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.97
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.95
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.94
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.94
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.94
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.94
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.94
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.94
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.93
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.93
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.93
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.93
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.93
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.93
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.91
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.91
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.89
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.89
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.89
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.87
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.86
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.86
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.86
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.86
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.84
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.84
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.84
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.84
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.83
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.82
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.82
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.82
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.81
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.81
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.81
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.81
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.8
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.8
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.8
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.79
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.79
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.79
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.78
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.78
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.77
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.77
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.77
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.77
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.77
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.77
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.77
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.77
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.76
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.75
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.75
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.75
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.74
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.74
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.74
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.73
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.71
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.71
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.71
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.68
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.67
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.67
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.67
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.65
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.65
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.63
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.61
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.6
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.6
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.6
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.59
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.59
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.58
3bos_A	242	Putative DNA replication factor; P-loop containing	96.57
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.57
2og2_A	359	Putative signal recognition particle receptor; nuc	96.56
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.55
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.54
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.54
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.52
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.52
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.51
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.5
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.49
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.49
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.49
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.48
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.47
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.47
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.47
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.4
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.39
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.38
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.33
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.32
3uc9_A	233	Increased recombination centers protein 6; rossman	96.32
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.31
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.31
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.31
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.3
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.29
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.28
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.28
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.27
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.26
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.25
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.23
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.2
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.2
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.18
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.17
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.16
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.16
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.15
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.15
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.14
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.1
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.1
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.1
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.09
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.06
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.03
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.02
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.02
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.01
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.01
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.0
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.98
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.97
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.97
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.97
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.96
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.95
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.95
2qgz_A	308	Helicase loader, putative primosome component; str	95.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.94
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.92
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.92
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.91
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.91
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.9
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.9
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.88
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.86
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.84
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.84
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.84
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.8
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.79
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.76
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.74
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.74
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.71
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.7
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.7
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.68
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.68
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.68
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.68
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.67
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.66
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.64
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.62
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.62

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=3.1e-46  Score=271.26  Aligned_cols=172  Identities=40%  Similarity=0.689  Sum_probs=147.2

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ++.+.+||+|+|++|||||||+++|+.+.+...+.+|++.++..+.+..++..+.+.||||+|+++|..+++.+++++++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            34667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +++|||++++++|+.+..|+..+......+.|++|||||+|+...+.+..++++.+++.++++|+++||++|.||+++|+
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~  168 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  168 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999887778899999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCC
Q 048059          166 EIAKRLARVSPP  177 (198)
Q Consensus       166 ~l~~~~~~~~~~  177 (198)
                      .|++.+......
T Consensus       169 ~i~~~i~~~~~~  180 (216)
T 4dkx_A          169 RVAAALPGMEST  180 (216)
T ss_dssp             HHHHHC------
T ss_pred             HHHHHHHhhhcc
Confidence            999988755443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=4.8e-39  Score=232.23  Aligned_cols=191  Identities=33%  Similarity=0.608  Sum_probs=160.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45679999999999999999999999998888889999888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877678999999999999887888888999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC----------C-CCCCCCCCCCCCCCCCcC
Q 048059          167 IAKRLARVSPPK----------R-SGINLNPETPERKGFCCL  197 (198)
Q Consensus       167 l~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~cc~  197 (198)
                      |.+.+.+.....          . ....+.+..++++.+|||
T Consensus       165 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~  206 (206)
T 2bcg_Y          165 MARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC  206 (206)
T ss_dssp             HHHHHHHHCCHHHHHTTSGGGCCCSCCCTTCC----------
T ss_pred             HHHHHHHHHhhcccccccccCCCccceeccccccccCCCCCC
Confidence            999988765432          1 222333222246668997

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.2e-37  Score=224.78  Aligned_cols=190  Identities=34%  Similarity=0.569  Sum_probs=151.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45679999999999999999999999988888888988888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccCCCCCHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLDSQREVPTEEGEQFSQ-ENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~  161 (198)
                      |+|||++++.+++.+..|+..+.....    ...|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999988876542    468999999999997 55667788888887 678899999999999999


Q ss_pred             HHHHHHHHHHHhhCCCC------CCCCCCCC-C-CCCCCCCCcC
Q 048059          162 ELFYEIAKRLARVSPPK------RSGINLNP-E-TPERKGFCCL  197 (198)
Q Consensus       162 ~~~~~l~~~~~~~~~~~------~~~~~~~~-~-~~~~~~~cc~  197 (198)
                      ++|++|.+.+.+.....      ...+.+.+ + ..+++.+|||
T Consensus       164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          164 QAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC  207 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred             HHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence            99999999887755321      22233333 2 2257788887

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=5.3e-37  Score=216.93  Aligned_cols=175  Identities=66%  Similarity=1.035  Sum_probs=154.3

Q ss_pred             CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhh
Q 048059            1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYY   80 (198)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   80 (198)
                      |+.+......+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++
T Consensus         3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   82 (181)
T 2efe_B            3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY   82 (181)
T ss_dssp             -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred             ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence            66777788899999999999999999999999988888888888888888888888889999999999999999999999


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      +++|++|+|||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+..+++..++...+++++++||++|.|+
T Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (181)
T 2efe_B           83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV  162 (181)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence            99999999999999999999999999998877678999999999999877888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhC
Q 048059          161 NELFYEIAKRLARVS  175 (198)
Q Consensus       161 ~~~~~~l~~~~~~~~  175 (198)
                      +++|++|.+.+.+..
T Consensus       163 ~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          163 KEIFYEIARRLPRVQ  177 (181)
T ss_dssp             HHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999998776544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=215.58  Aligned_cols=173  Identities=35%  Similarity=0.620  Sum_probs=159.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            34567999999999999999999999999888888999988888888889888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  171 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  171 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999888777899999999999988888888999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q 048059          166 EIAKRLARVSPPK  178 (198)
Q Consensus       166 ~l~~~~~~~~~~~  178 (198)
                      +|.+.+.++..+.
T Consensus       172 ~l~~~i~~~~~~~  184 (196)
T 3tkl_A          172 TMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHhccc
Confidence            9999999887765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-37  Score=223.77  Aligned_cols=172  Identities=40%  Similarity=0.668  Sum_probs=147.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            35679999999999999999999999988878888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+........|++||+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  169 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE  169 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678899999999999877788888999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC
Q 048059          167 IAKRLARVSPPK  178 (198)
Q Consensus       167 l~~~~~~~~~~~  178 (198)
                      |.+.+.+....+
T Consensus       170 l~~~i~~~~~~~  181 (223)
T 3cpj_B          170 LINTIYQKVSKH  181 (223)
T ss_dssp             HHHHHTTCC---
T ss_pred             HHHHHHHHhhhc
Confidence            999988765543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=219.20  Aligned_cols=168  Identities=30%  Similarity=0.577  Sum_probs=149.9

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      +....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            345579999999999999999999999888777777777665 4556678888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +++|||++++++++.+..|+..+..... ...|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999887643 578999999999998777888899999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 048059          165 YEIAKRLARV  174 (198)
Q Consensus       165 ~~l~~~~~~~  174 (198)
                      ++|++.+.+.
T Consensus       169 ~~l~~~i~~~  178 (206)
T 2bov_A          169 FDLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999988775

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=5e-36  Score=214.04  Aligned_cols=171  Identities=40%  Similarity=0.689  Sum_probs=152.9

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            45668999999999999999999999988887778888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  176 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI  176 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999987778888999999999999999999999999999999


Q ss_pred             HHHHHHHhhCC
Q 048059          166 EIAKRLARVSP  176 (198)
Q Consensus       166 ~l~~~~~~~~~  176 (198)
                      +|.+.+.++..
T Consensus       177 ~l~~~i~~~~~  187 (191)
T 2a5j_A          177 NTAKEIYRKIQ  187 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-36  Score=217.88  Aligned_cols=171  Identities=38%  Similarity=0.656  Sum_probs=156.9

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            35679999999999999999999999988888889999888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  182 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD  182 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877678899999999999877788888999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 048059          167 IAKRLARVSPP  177 (198)
Q Consensus       167 l~~~~~~~~~~  177 (198)
                      |.+.+.+....
T Consensus       183 l~~~i~~~~~~  193 (201)
T 2ew1_A          183 LACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=217.32  Aligned_cols=171  Identities=36%  Similarity=0.573  Sum_probs=148.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      .+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            35579999999999999999999999888777888888888788888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFY  165 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~  165 (198)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++..+++ +++++||++|.|++++|+
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  185 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL  185 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999887767899999999999987778888999999999999 999999999999999999


Q ss_pred             HHHHHHHhhCCC
Q 048059          166 EIAKRLARVSPP  177 (198)
Q Consensus       166 ~l~~~~~~~~~~  177 (198)
                      +|.+.+.+....
T Consensus       186 ~l~~~i~~~~~~  197 (201)
T 2hup_A          186 RVATELIMRHGG  197 (201)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHhccc
Confidence            999999876653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=6.4e-36  Score=210.79  Aligned_cols=169  Identities=40%  Similarity=0.689  Sum_probs=154.5

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAA   84 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   84 (198)
                      ......+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++++|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34566899999999999999999999999888888888888888888888888899999999999999999999999999


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988776789999999999998777888889999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 048059          165 YEIAKRLAR  173 (198)
Q Consensus       165 ~~l~~~~~~  173 (198)
                      ++|.+.+.+
T Consensus       170 ~~l~~~i~~  178 (179)
T 1z0f_A          170 LEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhh
Confidence            999998754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.3e-35  Score=211.43  Aligned_cols=169  Identities=30%  Similarity=0.564  Sum_probs=155.3

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+...+..+.+.+||+||++.+...+..++.++|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            34567999999999999999999999998887888888888877888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..+++.++++++++||++|.|++++|+
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  177 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE  177 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887667889999999999987778888899999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 048059          166 EIAKRLARV  174 (198)
Q Consensus       166 ~l~~~~~~~  174 (198)
                      +|.+.+.+.
T Consensus       178 ~l~~~i~~~  186 (189)
T 2gf9_A          178 RLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988765

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.8e-36  Score=214.69  Aligned_cols=171  Identities=33%  Similarity=0.603  Sum_probs=127.2

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      .+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999998887777778888888777788888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..+++.++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999877888889999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 048059          167 IAKRLARVSPP  177 (198)
Q Consensus       167 l~~~~~~~~~~  177 (198)
                      |.+.+.+...+
T Consensus       165 l~~~i~~~~~~  175 (183)
T 2fu5_C          165 LARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99988876543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=6.2e-36  Score=209.08  Aligned_cols=166  Identities=59%  Similarity=0.942  Sum_probs=152.9

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      +...+||+++|++|||||||+++|+++.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++.++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            46789999999999999999999999888887888888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+.....+..|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999777778888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048059          167 IAKRLA  172 (198)
Q Consensus       167 l~~~~~  172 (198)
                      |.+.+.
T Consensus       163 i~~~~~  168 (170)
T 1r2q_A          163 IAKKLP  168 (170)
T ss_dssp             HHHTSC
T ss_pred             HHHHHh
Confidence            987653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=5.3e-36  Score=209.64  Aligned_cols=167  Identities=39%  Similarity=0.705  Sum_probs=146.6

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999988888888988888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      ++|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..+++..+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999887765567899999999999877788889999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 048059          167 IAKRLAR  173 (198)
Q Consensus       167 l~~~~~~  173 (198)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.2e-35  Score=206.36  Aligned_cols=166  Identities=45%  Similarity=0.774  Sum_probs=153.6

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+....+.+|||||.+.+...+..++.++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999988888889999888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+.....+..|+++|+||+|+...+++..++...++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998877788999999999999877788889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048059          167 IAKRLA  172 (198)
Q Consensus       167 l~~~~~  172 (198)
                      |.+.+.
T Consensus       163 i~~~i~  168 (170)
T 1z0j_A          163 ISRRIP  168 (170)
T ss_dssp             HHHHCC
T ss_pred             HHHHHh
Confidence            988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=212.64  Aligned_cols=170  Identities=38%  Similarity=0.657  Sum_probs=155.6

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++.++|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  100 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG  100 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            34567999999999999999999999998887888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  180 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE  180 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998877667889999999999987777888899999999999999999999999999999


Q ss_pred             HHHHHHHhhC
Q 048059          166 EIAKRLARVS  175 (198)
Q Consensus       166 ~l~~~~~~~~  175 (198)
                      +|.+.+.+..
T Consensus       181 ~l~~~i~~~~  190 (193)
T 2oil_A          181 TVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.6e-35  Score=208.41  Aligned_cols=171  Identities=26%  Similarity=0.457  Sum_probs=152.1

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            45689999999999999999999999888888888888777 66777888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      ++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            999999999999999999988876533 5789999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q 048059          166 EIAKRLARVSPPK  178 (198)
Q Consensus       166 ~l~~~~~~~~~~~  178 (198)
                      +|++.+.+.....
T Consensus       162 ~l~~~~~~~~~~~  174 (181)
T 3t5g_A          162 RIILEAEKMDGAC  174 (181)
T ss_dssp             HHHHHHHTC----
T ss_pred             HHHHHHHHhcCCc
Confidence            9999998876543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-35  Score=207.63  Aligned_cols=171  Identities=37%  Similarity=0.614  Sum_probs=146.2

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA   83 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   83 (198)
                      ...+..+||+|+|++|||||||+++|++..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            34566899999999999999999999998875 45678888888777778888889999999999999999999999999


Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      |++|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..+++.++++++++||+++.|++++
T Consensus        85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998876678899999999999887888888999999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 048059          164 FYEIAKRLARVS  175 (198)
Q Consensus       164 ~~~l~~~~~~~~  175 (198)
                      |++|.+.+.+..
T Consensus       165 ~~~l~~~~~~~~  176 (180)
T 2g6b_A          165 FTAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999887544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.7e-35  Score=210.08  Aligned_cols=171  Identities=39%  Similarity=0.650  Sum_probs=156.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      .+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            45679999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999888876678999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 048059          167 IAKRLARVSPP  177 (198)
Q Consensus       167 l~~~~~~~~~~  177 (198)
                      |.+.+.+....
T Consensus       167 l~~~~~~~~~~  177 (186)
T 2bme_A          167 CARKILNKIES  177 (186)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhhh
Confidence            99999876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8e-36  Score=213.21  Aligned_cols=169  Identities=48%  Similarity=0.801  Sum_probs=153.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++.++|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            34668999999999999999999999998887888999998888888888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..+++.++++++++||++|.|++++|+
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ  178 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999887767899999999999977677888999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 048059          166 EIAKRLARV  174 (198)
Q Consensus       166 ~l~~~~~~~  174 (198)
                      +|.+.+.+.
T Consensus       179 ~l~~~i~~~  187 (192)
T 2fg5_A          179 GISRQIPPL  187 (192)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhh
Confidence            999876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.1e-36  Score=214.27  Aligned_cols=171  Identities=32%  Similarity=0.624  Sum_probs=147.9

Q ss_pred             CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059            4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA   83 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   83 (198)
                      |.+....+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++++
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            34556789999999999999999999999888777888888888888888888889999999999999999999999999


Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHH
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAKTAQNINE  162 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~  162 (198)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++... +++++++||++|.|+++
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  179 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE  179 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999999988877678999999999999877788888889999874 88999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 048059          163 LFYEIAKRLARV  174 (198)
Q Consensus       163 ~~~~l~~~~~~~  174 (198)
                      +|++|.+.+.++
T Consensus       180 l~~~l~~~i~~~  191 (192)
T 2il1_A          180 IFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=3.2e-35  Score=208.29  Aligned_cols=170  Identities=29%  Similarity=0.531  Sum_probs=153.0

Q ss_pred             CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059            4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA   83 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   83 (198)
                      +......+||+|+|++|||||||+++|++..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++++
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34566789999999999999999999999888888888888776 66777888889999999999999999999999999


Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC-CCCCHH
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK-TAQNIN  161 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~  161 (198)
                      |++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+..+++..++..++++++++||+ ++.|++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~  170 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD  170 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence            9999999999999999999999888663 44678999999999998888899999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHhh
Q 048059          162 ELFYEIAKRLARV  174 (198)
Q Consensus       162 ~~~~~l~~~~~~~  174 (198)
                      ++|++|.+.+.++
T Consensus       171 ~l~~~l~~~i~~q  183 (183)
T 3kkq_A          171 KTFHDLVRVIRQQ  183 (183)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999988753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-35  Score=207.75  Aligned_cols=164  Identities=49%  Similarity=0.843  Sum_probs=150.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      +.+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46999999999999999999999998888888999988888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC---CCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ---REVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+...   +.+..++...++...+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998877678999999999998654   67788889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 048059          166 EIAKRLA  172 (198)
Q Consensus       166 ~l~~~~~  172 (198)
                      +|.+.+.
T Consensus       162 ~l~~~i~  168 (170)
T 1ek0_A          162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHHh
Confidence            9987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.3e-35  Score=206.35  Aligned_cols=166  Identities=36%  Similarity=0.665  Sum_probs=146.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999998877788888888878888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||++++.+++.+..|+..+........|+++|+||+|+ ..+.+..+++..+++.++++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999998877678899999999999 4556778889999999999999999999999999999999


Q ss_pred             HHHHhhC
Q 048059          169 KRLARVS  175 (198)
Q Consensus       169 ~~~~~~~  175 (198)
                      +.+.++.
T Consensus       161 ~~~~~~~  167 (170)
T 1g16_A          161 KLIQEKI  167 (170)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHh
Confidence            9988754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-36  Score=216.70  Aligned_cols=171  Identities=31%  Similarity=0.546  Sum_probs=157.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+...+..+.+.+||+||++.+..++..++.++|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            34567999999999999999999999988877777888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE  178 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887777899999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHhhCC
Q 048059          166 EIAKRLARVSP  176 (198)
Q Consensus       166 ~l~~~~~~~~~  176 (198)
                      +|.+.+.+..+
T Consensus       179 ~l~~~i~~~~~  189 (191)
T 3dz8_A          179 RLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhcc
Confidence            99999988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=5.1e-35  Score=210.61  Aligned_cols=168  Identities=29%  Similarity=0.530  Sum_probs=154.7

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      .+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            34579999999999999999999999988888888888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998876678899999999999887788889999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 048059          167 IAKRLARV  174 (198)
Q Consensus       167 l~~~~~~~  174 (198)
                      |.+.+.+.
T Consensus       165 l~~~i~~~  172 (203)
T 1zbd_A          165 LVDVICEK  172 (203)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.7e-36  Score=215.14  Aligned_cols=168  Identities=28%  Similarity=0.441  Sum_probs=145.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....++|+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++.++|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            34569999999999999999999999888777777777554 34456777888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      ++|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.. +.+..+++..++..++++++++||++|.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            999999999999999888887766432  4689999999999864 5667788899999999999999999999999999


Q ss_pred             HHHHHHHHhhCC
Q 048059          165 YEIAKRLARVSP  176 (198)
Q Consensus       165 ~~l~~~~~~~~~  176 (198)
                      ++|.+.+.++..
T Consensus       163 ~~l~~~~~~~~~  174 (199)
T 2gf0_A          163 QELLTLETRRNM  174 (199)
T ss_dssp             HHHHHHCSSSCE
T ss_pred             HHHHHHHhhhhc
Confidence            999998776554

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.9e-35  Score=206.59  Aligned_cols=172  Identities=34%  Similarity=0.571  Sum_probs=154.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++.++|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            34567999999999999999999999988888888898888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +|+|||++++.+++.+..|+..+.... ...|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999999988764 5789999999999988888888999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCC
Q 048059          166 EIAKRLARVSPPK  178 (198)
Q Consensus       166 ~l~~~~~~~~~~~  178 (198)
                      +|.+.+.+...++
T Consensus       164 ~l~~~~~~~~~~~  176 (181)
T 3tw8_B          164 CITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh
Confidence            9999988765543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=212.52  Aligned_cols=171  Identities=37%  Similarity=0.639  Sum_probs=146.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      .+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            35679999999999999999999999888777888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  181 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876678999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 048059          167 IAKRLARVSPP  177 (198)
Q Consensus       167 l~~~~~~~~~~  177 (198)
                      |.+.+.+....
T Consensus       182 l~~~i~~~~~~  192 (200)
T 2o52_A          182 CARTILNKIDS  192 (200)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99998876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=3.7e-35  Score=207.21  Aligned_cols=172  Identities=31%  Similarity=0.542  Sum_probs=152.6

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      +....+||+|+|++|||||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            3455799999999999999999999999888888888887765 566778888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +++|||++++.+++.+..|+..+.. ....+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            9999999999999999999988844 445678999999999998777888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCC
Q 048059          165 YEIAKRLARVSPPK  178 (198)
Q Consensus       165 ~~l~~~~~~~~~~~  178 (198)
                      ++|.+.+.+.....
T Consensus       164 ~~l~~~~~~~~~~~  177 (181)
T 2fn4_A          164 EQLVRAVRKYQEQE  177 (181)
T ss_dssp             HHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHhhccC
Confidence            99999998776543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=7.3e-36  Score=210.52  Aligned_cols=170  Identities=32%  Similarity=0.472  Sum_probs=149.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+.+ ..+.+.+|||||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45679999999999999999999999887766678888777777777776 57899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      +|+|||++++.+++.+..|+..+....   ....|+++|+||+|+...+.+..+++..+++.++++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999999988887642   13345899999999987777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCC
Q 048059          163 LFYEIAKRLARVSP  176 (198)
Q Consensus       163 ~~~~l~~~~~~~~~  176 (198)
                      +|++|.+.+.+...
T Consensus       163 l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          163 CFQKVAAEILGIKL  176 (178)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999998876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2.1e-35  Score=208.13  Aligned_cols=167  Identities=41%  Similarity=0.704  Sum_probs=152.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888766677899999999999877788888999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 048059          167 IAKRLAR  173 (198)
Q Consensus       167 l~~~~~~  173 (198)
                      |.+.+.+
T Consensus       171 l~~~~~~  177 (179)
T 2y8e_A          171 VAAALPG  177 (179)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHhh
Confidence            9886543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=211.38  Aligned_cols=171  Identities=25%  Similarity=0.291  Sum_probs=145.3

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-cchhhhcCCC
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-LAPMYYRGAA   84 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d   84 (198)
                      .....+||+|+|++|||||||+++|++........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++++|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            445679999999999999999999976544434445566666677777888899999999999987765 7788899999


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      ++|+|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999998887643 57899999999999887888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q 048059          164 FYEIAKRLARVSP  176 (198)
Q Consensus       164 ~~~l~~~~~~~~~  176 (198)
                      |++|++.+.+...
T Consensus       179 f~~l~~~i~~~~~  191 (195)
T 3cbq_A          179 FEGAVRQIRLRRG  191 (195)
T ss_dssp             HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcC
Confidence            9999998875443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=3e-35  Score=205.34  Aligned_cols=165  Identities=28%  Similarity=0.512  Sum_probs=151.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999998887765 678999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHh
Q 048059          168 AKRLAR  173 (198)
Q Consensus       168 ~~~~~~  173 (198)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=4e-35  Score=208.52  Aligned_cols=169  Identities=31%  Similarity=0.555  Sum_probs=145.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+|+|++|||||||+++|++..+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..++.++|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEE-EEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchhe-EEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            357999999999999999999999988777777776543 3556677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+....+.+..++..++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999888753 3678999999999986 4566788899999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC
Q 048059          167 IAKRLARVSPPK  178 (198)
Q Consensus       167 l~~~~~~~~~~~  178 (198)
                      |.+.+.+.....
T Consensus       160 l~~~~~~~~~~~  171 (189)
T 4dsu_A          160 LVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhc
Confidence            999988766543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3.6e-35  Score=209.51  Aligned_cols=171  Identities=29%  Similarity=0.510  Sum_probs=153.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEE-EEEEEeCCc---------EEEEEEEeCCCchhhccc
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFF-TQILSLSEA---------TVKFDIWDTAGQERYHSL   75 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~~   75 (198)
                      .....+||+|+|++|||||||+++|+++.+...+.++.+.++. ...+...+.         .+.+.+|||||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            3456799999999999999999999998888888888888876 556666665         789999999999999999


Q ss_pred             chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059           76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                      +..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++..++++++++||
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  166 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA  166 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999999888654 67899999999999877788888999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhhCC
Q 048059          155 KTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      +++.|++++|++|.+.+.+...
T Consensus       167 ~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          167 ANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999887654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=213.14  Aligned_cols=170  Identities=31%  Similarity=0.533  Sum_probs=146.1

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..++.++|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            45579999999999999999999999998888888887776 56666777788999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      |+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999887653 35689999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCC
Q 048059          166 EIAKRLARVSPP  177 (198)
Q Consensus       166 ~l~~~~~~~~~~  177 (198)
                      +|.+.+.+....
T Consensus       180 ~l~~~i~~~~~~  191 (201)
T 3oes_A          180 KVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHHHHhhhhh
Confidence            999999887654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=212.90  Aligned_cols=168  Identities=31%  Similarity=0.546  Sum_probs=140.2

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            34557999999999999999999999988877788888888878888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC------CCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD------SQREVPTEEGEQFSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (198)
                      +|+|||++++.+++.+..|+..+........|+++|+||+|+.      ..+.+..+++..++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999999888766678999999999985      4567788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 048059          160 INELFYEIAKRLAR  173 (198)
Q Consensus       160 i~~~~~~l~~~~~~  173 (198)
                      ++++|++|++.+.+
T Consensus       184 v~el~~~l~~~i~~  197 (199)
T 2p5s_A          184 IVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.5e-34  Score=203.65  Aligned_cols=168  Identities=33%  Similarity=0.552  Sum_probs=147.7

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            35667999999999999999999999998888888898888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccCCCCCH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLDSQREVPTEEGEQFSQ-ENGMFYIETSAKTAQNI  160 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  160 (198)
                      +++|||++++.+++.+..|+..+.....    ...|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999988877543    678999999999987 56677888899888 56789999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 048059          161 NELFYEIAKRLARV  174 (198)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (198)
                      +++|++|++.+.+.
T Consensus       162 ~~l~~~l~~~~~~~  175 (177)
T 1wms_A          162 AAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=5.2e-35  Score=208.38  Aligned_cols=168  Identities=35%  Similarity=0.609  Sum_probs=148.3

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-ccchhhhcCCC
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-SLAPMYYRGAA   84 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d   84 (198)
                      .....+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++++|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            34557999999999999999999999998888888888888888888888888999999999999998 88999999999


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC---CCH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA---QNI  160 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i  160 (198)
                      ++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++..++++++++||+++   .|+
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i  175 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV  175 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence            9999999999999999999999988764 467899999999999877788889999999999999999999999   999


Q ss_pred             HHHHHHHHHHHHh
Q 048059          161 NELFYEIAKRLAR  173 (198)
Q Consensus       161 ~~~~~~l~~~~~~  173 (198)
                      +++|++|.+.+.+
T Consensus       176 ~~l~~~l~~~i~~  188 (189)
T 1z06_A          176 EAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=3.5e-35  Score=213.34  Aligned_cols=171  Identities=27%  Similarity=0.439  Sum_probs=147.0

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|+++.+...+.++.+.++ ...+.+.+..+.+.+|||+|++.+..++..+++++|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            455679999999999999999999999998888888888776 4556677888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 048059           86 AVVVYDISNMDTFNR-ANKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIE  151 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  151 (198)
                      +|+|||++++++++. +..|+..+.... .+.|+++|+||+|+..            .+.+..+++..++..+++ ++++
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  180 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE  180 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence            999999999999998 689999998874 5789999999999965            367889999999999999 9999


Q ss_pred             EccCCCCC-HHHHHHHHHHHHHhhCCCC
Q 048059          152 TSAKTAQN-INELFYEIAKRLARVSPPK  178 (198)
Q Consensus       152 ~Sa~~~~~-i~~~~~~l~~~~~~~~~~~  178 (198)
                      +||++|.| ++++|++|++.+.+.....
T Consensus       181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          181 GSAFTSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred             eccCCCcccHHHHHHHHHHHHhccCcCC
Confidence            99999998 9999999999988765543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=209.32  Aligned_cols=166  Identities=22%  Similarity=0.422  Sum_probs=143.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+ ..+++++|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            345679999999999999999999999988888888888766 445677888899999999999988775 679999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc-CCCCCHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA-KTAQNIN  161 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~  161 (198)
                      +|+|||++++++++.+..|+..+....   ....|+++|+||+|+...+.+..+++..++..++++++++|| ++|.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999999887753   257899999999999877888889999999999999999999 8999999


Q ss_pred             HHHHHHHHHHHh
Q 048059          162 ELFYEIAKRLAR  173 (198)
Q Consensus       162 ~~~~~l~~~~~~  173 (198)
                      ++|++|++.+.+
T Consensus       175 ~lf~~l~~~i~~  186 (187)
T 3c5c_A          175 HVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=2.1e-34  Score=206.05  Aligned_cols=170  Identities=28%  Similarity=0.471  Sum_probs=149.9

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+++|++|||||||+++|+++.+...+.++.+..+. ..+.+.+..+.+.+|||||++.+...+..+++++|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            3456799999999999999999999999988888888887764 456678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC--CCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHH
Q 048059           86 AVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS--QREVPTEEGEQFSQENGMF-YIETSAKTAQNIN  161 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~  161 (198)
                      +|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+..  .+.+..+++..+++.+++. ++++||++|.|++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  176 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN  176 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence            9999999999999997 77888887653 5789999999999865  3678889999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHhhCCC
Q 048059          162 ELFYEIAKRLARVSPP  177 (198)
Q Consensus       162 ~~~~~l~~~~~~~~~~  177 (198)
                      ++|++|++.+.+..+.
T Consensus       177 ~l~~~l~~~i~~~~~~  192 (194)
T 3reg_A          177 EVFEKSVDCIFSNKPV  192 (194)
T ss_dssp             HHHHHHHHHHHCSCC-
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999876553

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=2.2e-34  Score=204.54  Aligned_cols=164  Identities=18%  Similarity=0.334  Sum_probs=143.8

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|+++.+...+.++. ..+ ...+.+++..+.+.+|||+|++.+.     +++++|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            45668999999999999999999999998887777773 333 4677888889999999999998776     7888999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCC--CCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLD--SQREVPTEEGEQFSQENG-MFYIETSAKTAQNIN  161 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  161 (198)
                      +++|||++++.+++.+..|+..+..... ...|+++|+||+|+.  ..+.+..+++..++..++ ++++++||++|.|++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            9999999999999999999999987643 578999999999994  567788899999999997 899999999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 048059          162 ELFYEIAKRLARVSP  176 (198)
Q Consensus       162 ~~~~~l~~~~~~~~~  176 (198)
                      ++|++|++.+.+...
T Consensus       169 ~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          169 RVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.6e-35  Score=213.53  Aligned_cols=171  Identities=29%  Similarity=0.473  Sum_probs=145.3

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus         5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             SCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             CcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            345679999999999999999999999888877888887665 4456678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC--------CCCHHHHHHHHHHcCC-eEEEEccC
Q 048059           86 AVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR--------EVPTEEGEQFSQENGM-FYIETSAK  155 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~-~~~~~Sa~  155 (198)
                      +|+|||++++++++.+. .|+..+.... ++.|++||+||+|+...+        .+..+++..++..+++ +++++||+
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK  162 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCC
Confidence            99999999999999986 8998888764 478999999999986543        2467888999999996 99999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCC
Q 048059          156 TAQNINELFYEIAKRLARVSPPK  178 (198)
Q Consensus       156 ~~~~i~~~~~~l~~~~~~~~~~~  178 (198)
                      +|.|++++|++|++.+.+....+
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          163 TQQNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             TCTTHHHHHHHHHHHHHCC----
T ss_pred             CCCCHHHHHHHHHHHHhhhhhhc
Confidence            99999999999999998765543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.3e-34  Score=202.53  Aligned_cols=165  Identities=24%  Similarity=0.297  Sum_probs=134.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-cchhhhcCCCeEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-LAPMYYRGAAAAVV   88 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~   88 (198)
                      .+||+++|++|||||||+++|++........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999998776666666666777777788889899999999999998876 78888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..+++..+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998887644 478999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 048059          168 AKRLARV  174 (198)
Q Consensus       168 ~~~~~~~  174 (198)
                      .+.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=202.60  Aligned_cols=168  Identities=32%  Similarity=0.412  Sum_probs=138.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--hcccchhhhcCCCe
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--YHSLAPMYYRGAAA   85 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~   85 (198)
                      +..+||+|+|++|||||||+++|.+..+... .++.+.+.....+.+++..+.+.+|||+|++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            3469999999999999999999998776543 34567777777788888889999999999987  56677788899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887752 3578999999999998878888888999999999999999999999999999


Q ss_pred             HHHHHHHHhhCC
Q 048059          165 YEIAKRLARVSP  176 (198)
Q Consensus       165 ~~l~~~~~~~~~  176 (198)
                      ++|.+.+.+...
T Consensus       161 ~~l~~~~~~~~~  172 (175)
T 2nzj_A          161 EGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc
Confidence            999999877654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.6e-34  Score=206.92  Aligned_cols=168  Identities=35%  Similarity=0.641  Sum_probs=151.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++.++|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34569999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+........|+++|+||+|+ ..+.+..+++..++..++++++++||++|.|++++|++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876667899999999999 45667788889999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 048059          167 IAKRLARVS  175 (198)
Q Consensus       167 l~~~~~~~~  175 (198)
                      |.+.+.+..
T Consensus       176 l~~~~~~~~  184 (213)
T 3cph_A          176 LAKLIQEKI  184 (213)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1e-34  Score=205.09  Aligned_cols=170  Identities=33%  Similarity=0.566  Sum_probs=136.1

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ....++|+|+|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4557999999999999999999999988888888888888777777776 566889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCC-CCCCCCHHHHHHHHH-HcCCeEEEEccCCCCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLD-SQREVPTEEGEQFSQ-ENGMFYIETSAKTAQN  159 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  159 (198)
                      +|+|||++++.+++.+..|+..+.....    ...|+++|+||+|+. ..+.+..+++..++. ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999988877543    678999999999994 345667888888888 5678999999999999


Q ss_pred             HHHHHHHHHHHHHhhCC
Q 048059          160 INELFYEIAKRLARVSP  176 (198)
Q Consensus       160 i~~~~~~l~~~~~~~~~  176 (198)
                      ++++|++|.+.+.+.+.
T Consensus       165 i~~l~~~l~~~~~~~~~  181 (182)
T 1ky3_A          165 VDTAFEEIARSALQQNQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999887643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7e-34  Score=203.11  Aligned_cols=169  Identities=36%  Similarity=0.660  Sum_probs=152.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++++|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            34567999999999999999999999998888888998888888888888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +|+|||++++.+++.+..|+..+.... ....|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++++|
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  169 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            999999999999999999998887653 2578999999999984 45677888999999999999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 048059          165 YEIAKRLARVS  175 (198)
Q Consensus       165 ~~l~~~~~~~~  175 (198)
                      ++|.+.+.+..
T Consensus       170 ~~l~~~~~~~~  180 (195)
T 1x3s_A          170 EELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHHTSG
T ss_pred             HHHHHHHHhhh
Confidence            99999988653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=2.4e-34  Score=200.55  Aligned_cols=164  Identities=30%  Similarity=0.580  Sum_probs=144.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..++.++|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            469999999999999999999999887777777777665 3445678888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988877643 578999999999998777788899999999999999999999999999999999


Q ss_pred             HHHHHh
Q 048059          168 AKRLAR  173 (198)
Q Consensus       168 ~~~~~~  173 (198)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=9.6e-34  Score=203.66  Aligned_cols=166  Identities=44%  Similarity=0.746  Sum_probs=147.6

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcE----------------------------
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT----------------------------   58 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   58 (198)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            3457999999999999999999999998888888888888877777776655                            


Q ss_pred             ---------EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           59 ---------VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        59 ---------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                               +.+.+|||||++.+...+..+++.+|++|+|||++++.+++.+..|+..+.....  .|+++|+||+| ..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence                     8899999999999999999999999999999999999999999999998887654  89999999999 55


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      .+.+..+++..++...+++++++||++|.|++++|++|.+.+.++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            6677889999999999999999999999999999999999887653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=2.6e-34  Score=200.38  Aligned_cols=163  Identities=31%  Similarity=0.597  Sum_probs=145.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999888777878877665 3556678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |||++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+..+++..++..+ +++++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            99999999999999998888774 3467899999999999877788888999999887 789999999999999999999


Q ss_pred             HHHHHH
Q 048059          167 IAKRLA  172 (198)
Q Consensus       167 l~~~~~  172 (198)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998774

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=206.38  Aligned_cols=170  Identities=26%  Similarity=0.412  Sum_probs=140.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            456689999999999999999999999887777778877555 4556778888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 048059           86 AVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIE  151 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~  151 (198)
                      +|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+..            .+.+..+++..++..+++ ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999996 7998888764 4789999999999864            356778889999999887 9999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          152 TSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      +||++|.|++++|++|++.+.+...+
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EecCCCCCHHHHHHHHHHHHhccccc
Confidence            99999999999999999998876553

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-33  Score=202.08  Aligned_cols=165  Identities=25%  Similarity=0.433  Sum_probs=146.3

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            45679999999999999999999999988777788877665 45566778889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 048059           87 VVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIET  152 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~  152 (198)
                      |+|||++++++++.+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..+++.+++ +++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            9999999999999987 7988888764 47899999999999653            46778899999999998 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHh
Q 048059          153 SAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ||++|.|++++|++|.+.++.
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998763

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=4.2e-34  Score=199.33  Aligned_cols=163  Identities=26%  Similarity=0.347  Sum_probs=124.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||+++|.+.... ...++.+.++ ...+.+.+..+.+.+||++|++.+...+..++.++|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            589999999999999999999875543 3345556555 45667888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999998887753 36789999999999988888999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 048059          169 KRLARV  174 (198)
Q Consensus       169 ~~~~~~  174 (198)
                      +.+.++
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=2.9e-34  Score=199.96  Aligned_cols=164  Identities=31%  Similarity=0.574  Sum_probs=146.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            468999999999999999999999888777777766544 5666788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..++...++..++++++++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999988887753 3578999999999998777888889999999999999999999999999999999


Q ss_pred             HHHHHh
Q 048059          168 AKRLAR  173 (198)
Q Consensus       168 ~~~~~~  173 (198)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=8.3e-34  Score=200.13  Aligned_cols=162  Identities=23%  Similarity=0.375  Sum_probs=138.6

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+++|++|||||||+++|+++.+.. +.++.+..+ ...+.+++..+.+.+|||+|+++     ..+++++|++
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~   76 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAV   76 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence            3567999999999999999999999988765 677777554 56677788889999999999876     4678899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQ---GNQIVVMALAANKSDLD--SQREVPTEEGEQFSQEN-GMFYIETSAKTAQNI  160 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i  160 (198)
                      |+|||++++++++.+..|+..+...   ...+.|+++|+||+|+.  ..+.+..+++..++... +++++++||++|.|+
T Consensus        77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            9999999999999999877666553   23678999999999994  56678888999998876 689999999999999


Q ss_pred             HHHHHHHHHHHHhhC
Q 048059          161 NELFYEIAKRLARVS  175 (198)
Q Consensus       161 ~~~~~~l~~~~~~~~  175 (198)
                      +++|++|.+.+.+..
T Consensus       157 ~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          157 DRVFQEVAQKVVTLR  171 (178)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.1e-34  Score=206.46  Aligned_cols=170  Identities=26%  Similarity=0.337  Sum_probs=141.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-hcccchhhhcCCC
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-YHSLAPMYYRGAA   84 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d   84 (198)
                      ....+||+|+|++|||||||+++|.+.... ....++++.++....+.+++..+.+.+|||+|.+. +..+...+++.++
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            345699999999999999999999964331 22234567777677778888889999999999876 4556777889999


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      ++|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el  193 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  193 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999998887653 2356899999999999877788888888999999999999999999999999


Q ss_pred             HHHHHHHHHhhCC
Q 048059          164 FYEIAKRLARVSP  176 (198)
Q Consensus       164 ~~~l~~~~~~~~~  176 (198)
                      |++|++.+.....
T Consensus       194 f~~l~~~i~~~~~  206 (211)
T 2g3y_A          194 FEGIVRQVRLRRD  206 (211)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999876554

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=4.4e-34  Score=202.70  Aligned_cols=169  Identities=30%  Similarity=0.574  Sum_probs=148.7

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..++.++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            345679999999999999999999999888777777777665 4455677888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +++|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..+++..+++.++++++++||+++.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999988877543 578999999999998777788899999999999999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 048059          165 YEIAKRLARVS  175 (198)
Q Consensus       165 ~~l~~~~~~~~  175 (198)
                      ++|.+.+.++.
T Consensus       173 ~~l~~~i~~~~  183 (187)
T 2a9k_A          173 FDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.4e-34  Score=210.42  Aligned_cols=170  Identities=29%  Similarity=0.493  Sum_probs=149.9

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc----------EEEEEEEeCCCchhhcccc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA----------TVKFDIWDTAGQERYHSLA   76 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~~~   76 (198)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+.          .+.+.||||||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            356799999999999999999999998877777777777776666766665          7889999999999999999


Q ss_pred             hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC
Q 048059           77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK  155 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (198)
                      ..++.++|++|+|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..+++..++..++++++++||+
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  181 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  181 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence            9999999999999999999999999999887765443 678999999999998777888899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhCC
Q 048059          156 TAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       156 ~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      ++.|++++|++|.+.+.+...
T Consensus       182 ~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          182 TGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             TTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999998887544

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-34  Score=204.92  Aligned_cols=168  Identities=33%  Similarity=0.522  Sum_probs=148.2

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..++.++|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            35579999999999999999999999988877888877665 45566788889999999999987 77888999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC-CHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELF  164 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~  164 (198)
                      |+|||++++++++.+..|+..+.... ....|+++|+||+|+...+.+..+++..++..++++++++||++|. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999998887753 3678999999999998777888899999999999999999999999 999999


Q ss_pred             HHHHHHHHhhCC
Q 048059          165 YEIAKRLARVSP  176 (198)
Q Consensus       165 ~~l~~~~~~~~~  176 (198)
                      ++|++.+.++.+
T Consensus       183 ~~l~~~i~~~~~  194 (196)
T 2atv_A          183 YELCREVRRRRM  194 (196)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHhhcc
Confidence            999999987654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.1e-33  Score=200.53  Aligned_cols=166  Identities=24%  Similarity=0.415  Sum_probs=146.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..++.++|++|
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4679999999999999999999999888777778777655 455677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 048059           88 VVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETS  153 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (198)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+..+++..++...++ +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 7888887764 37899999999998643            56778889999999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhC
Q 048059          154 AKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      |++|.|++++|++|.+.+.+..
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCccCHHHHHHHHHHHHhccc
Confidence            9999999999999999886543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=6.9e-34  Score=201.79  Aligned_cols=165  Identities=27%  Similarity=0.472  Sum_probs=144.6

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999888777788887665 44567788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEE
Q 048059           87 VVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENG-MFYIET  152 (198)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~  152 (198)
                      |+|||++++++++.+ ..|+..+.... +..|+++|+||+|+..            .+.+..+++..+++.++ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 78988887764 5789999999999964            25678889999999887 699999


Q ss_pred             ccC-CCCCHHHHHHHHHHHHHh
Q 048059          153 SAK-TAQNINELFYEIAKRLAR  173 (198)
Q Consensus       153 Sa~-~~~~i~~~~~~l~~~~~~  173 (198)
                      ||+ ++.|++++|+++.+.+.+
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            999 689999999999998864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.4e-34  Score=208.77  Aligned_cols=169  Identities=22%  Similarity=0.421  Sum_probs=114.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCcceeEEEEEEEeCCc--EEEEEEEeCCCchhhcccchhhhcCC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKG--QFYDQQEPTIGAAFFTQILSLSEA--TVKFDIWDTAGQERYHSLAPMYYRGA   83 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~   83 (198)
                      ...+||+|+|++|||||||+++|++.  .+...+.++.+.++....+.+++.  .+.+.+|||||++.+...+..++.++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            56799999999999999999999988  666677788877777777778777  88999999999999999999999999


Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHcCCeEEEEccCC-CC
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGN---QIVVMALAANKSDLDS-QREVPTEEGEQFSQENGMFYIETSAKT-AQ  158 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  158 (198)
                      |++|+|||++++.+++.+..|+..+.....   ...|+++|+||+|+.. .+.+..+++..++..++++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   6889999999999987 778888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHhhCC
Q 048059          159 NINELFYEIAKRLARVSP  176 (198)
Q Consensus       159 ~i~~~~~~l~~~~~~~~~  176 (198)
                      |++++|++|.+.+.+...
T Consensus       178 gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             --CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999998876543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=5.9e-33  Score=197.78  Aligned_cols=170  Identities=31%  Similarity=0.552  Sum_probs=136.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      +.+..+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..++..+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            356679999999999999999999999887777767766554 4556677888899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +++|||++++.+++.+..|+..+..... ...|+++|+||+|+.. +.+..+++.++++.++++++++||+++.|++++|
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988877533 5689999999999865 5667888999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCC
Q 048059          165 YEIAKRLARVSPP  177 (198)
Q Consensus       165 ~~l~~~~~~~~~~  177 (198)
                      ++|.+.+.+...+
T Consensus       175 ~~l~~~~~~~~~~  187 (190)
T 3con_A          175 YTLVREIRQYRMK  187 (190)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998876543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-33  Score=203.19  Aligned_cols=165  Identities=27%  Similarity=0.472  Sum_probs=144.7

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++.++|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            35579999999999999999999999988877788887766 44567788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEE
Q 048059           87 VVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENG-MFYIET  152 (198)
Q Consensus        87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~  152 (198)
                      |+|||++++.+++.+ ..|+..+.... ...|+++|+||+|+..            .+.+..+++..+++.++ ++++++
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999998 78988887764 5789999999999964            35678888999999887 699999


Q ss_pred             ccC-CCCCHHHHHHHHHHHHHh
Q 048059          153 SAK-TAQNINELFYEIAKRLAR  173 (198)
Q Consensus       153 Sa~-~~~~i~~~~~~l~~~~~~  173 (198)
                      ||+ ++.|++++|++|++.++.
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHhh
Confidence            999 689999999999998875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=5.7e-34  Score=207.31  Aligned_cols=173  Identities=28%  Similarity=0.439  Sum_probs=148.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERYHSLAPMYYRGAA   84 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d   84 (198)
                      .....+||+|+|.+|||||||+++|+++.+...+.++.+...........+ ..+.+.+|||+|++.+...+..++.++|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            345679999999999999999999998887777778888776666655543 4488999999999999999999999999


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+.+..++...+++++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999988766678999999999998777888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCC
Q 048059          165 YEIAKRLARVSPPK  178 (198)
Q Consensus       165 ~~l~~~~~~~~~~~  178 (198)
                      ++|.+.+.+.....
T Consensus       167 ~~l~~~~~~~~~~~  180 (218)
T 4djt_A          167 LHLARIFTGRPDLI  180 (218)
T ss_dssp             HHHHHHHHCCTTCC
T ss_pred             HHHHHHHhcccccc
Confidence            99999988766543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=8e-33  Score=199.00  Aligned_cols=164  Identities=30%  Similarity=0.487  Sum_probs=145.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+|+|.+|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            55799999999999999999999999888778888877764 34567888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 048059           88 VVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETS  153 (198)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (198)
                      +|||++++++++.+ ..|+..+.... .+.|+++|+||+|+...            +.+..+++..++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 67888887754 57899999999998654            56778889999999998 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q 048059          154 AKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~  173 (198)
                      |++|.|++++|++|.+.+.+
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=204.49  Aligned_cols=167  Identities=29%  Similarity=0.516  Sum_probs=125.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..++.++|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999998887777777776554 455677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 048059           88 VVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETS  153 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (198)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+..+++..+++.+++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 7888887764 57899999999999654            36778888999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCC
Q 048059          154 AKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      |++|.|++++|++|.+.+.+...
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999886543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.5e-32  Score=190.98  Aligned_cols=163  Identities=33%  Similarity=0.592  Sum_probs=143.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            358999999999999999999999887777777766544 4556677888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++..++++.++++++++||++|.|+++++++|
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988877533 4789999999999865 5567888999999999999999999999999999999


Q ss_pred             HHHHHh
Q 048059          168 AKRLAR  173 (198)
Q Consensus       168 ~~~~~~  173 (198)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-32  Score=198.68  Aligned_cols=166  Identities=30%  Similarity=0.493  Sum_probs=140.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+|+|++|||||||+++|++..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            567999999999999999999999988877777777766543 3567888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 048059           88 VVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETS  153 (198)
Q Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  153 (198)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...            +.+..+++..++...++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67888887754 57899999999998654            56778888999999988 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhC
Q 048059          154 AKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      |++|.|++++|++|.+.+.+..
T Consensus       181 A~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999887543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-33  Score=196.67  Aligned_cols=163  Identities=26%  Similarity=0.461  Sum_probs=142.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||+++|+++.+...+.++.+.++ ...+...+..+.+.+|||||++.+...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            368999999999999999999999887777777777655 3445667778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |||++++.+++.+..|+..+.....  .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999888888776432  46899999999999877778888889999999999999999999999999999


Q ss_pred             HHHHHH
Q 048059          167 IAKRLA  172 (198)
Q Consensus       167 l~~~~~  172 (198)
                      |.+.+.
T Consensus       161 l~~~~~  166 (172)
T 2erx_A          161 LLNLEK  166 (172)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            987553

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.5e-36  Score=215.18  Aligned_cols=168  Identities=36%  Similarity=0.630  Sum_probs=142.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            45679999999999999999999998887777777888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  189 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998776678999999999999877777777788999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 048059          167 IAKRLARV  174 (198)
Q Consensus       167 l~~~~~~~  174 (198)
                      |.+.+.++
T Consensus       190 l~~~l~~~  197 (199)
T 3l0i_B          190 MAAEIKKR  197 (199)
T ss_dssp             HTTTTTTT
T ss_pred             HHHHHHHh
Confidence            98876543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=7e-34  Score=203.40  Aligned_cols=170  Identities=20%  Similarity=0.244  Sum_probs=138.2

Q ss_pred             CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------CCCcceeEEEEEE-EeCCcEEEEEEEeCCCchh
Q 048059            4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-----------EPTIGAAFFTQIL-SLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~   71 (198)
                      +......+||+|+|++|||||||++.+.+. +...+           .++.+.++....+ .+++..+.+.+|||||++.
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF   86 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence            345677899999999999999999766653 33332           3344544444434 5667788999999999999


Q ss_pred             hcccchhhhcCCCeEEEEEECC------ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc
Q 048059           72 YHSLAPMYYRGAAAAVVVYDIS------NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN  145 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  145 (198)
                      +...+..+++++|++|+|||++      +.++++.+..|+..+. ....+.|+++|+||+|+...  +..+++.+++...
T Consensus        87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~  163 (198)
T 3t1o_A           87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE  163 (198)
T ss_dssp             CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence            9999999999999999999999      5567777777877763 23467899999999998653  6788999999999


Q ss_pred             CC-eEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          146 GM-FYIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       146 ~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      ++ +++++||++|.|++++|++|.+.+.+....
T Consensus       164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             CCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            99 999999999999999999999999887653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=3e-33  Score=201.74  Aligned_cols=164  Identities=24%  Similarity=0.413  Sum_probs=139.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  104 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            456679999999999999999999999888777777776443 5566678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEE
Q 048059           86 AVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR------------EVPTEEGEQFSQENGM-FYIE  151 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~  151 (198)
                      +|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+....            .+..+++..+++..++ ++++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence            99999999999999996 7888888765 678999999999986532            3778889999999987 5999


Q ss_pred             EccCCCCCHHHHHHHHHHHH
Q 048059          152 TSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      +||++|.|++++|++|.+.+
T Consensus       184 ~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          184 CSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CCTTTCTTHHHHHHHHHHTT
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=1.8e-32  Score=195.88  Aligned_cols=169  Identities=26%  Similarity=0.363  Sum_probs=138.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-hcccchhhhcCCCe
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-YHSLAPMYYRGAAA   85 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~   85 (198)
                      ...+||+++|++|||||||+++|.+.... ....++.+.++....+.+++..+.+.+|||+|.+. +..++..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            34699999999999999999999964321 22234466676677778888889999999999876 55677888899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +++|||++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf  163 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF  163 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence            999999999999999999988887653 3578999999999997777788888888888899999999999999999999


Q ss_pred             HHHHHHHHhhCC
Q 048059          165 YEIAKRLARVSP  176 (198)
Q Consensus       165 ~~l~~~~~~~~~  176 (198)
                      ++|.+.+.....
T Consensus       164 ~~l~~~~~~~~~  175 (192)
T 2cjw_A          164 EGIVRQVRLRRD  175 (192)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHhhcc
Confidence            999998865543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=6.1e-34  Score=201.32  Aligned_cols=164  Identities=29%  Similarity=0.490  Sum_probs=126.9

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+.+..+.+.+|||||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            455799999999999999999999998877777777665442 2234556677888999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEEcc
Q 048059           87 VVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQRE----------VPTEEGEQFSQENGM-FYIETSA  154 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  154 (198)
                      ++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+.          +..+++..++..+++ +++++||
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            9999999999999997 7988888764 4789999999999865433          477888999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 048059          155 KTAQNINELFYEIAKRLA  172 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~  172 (198)
                      ++|.|++++|++|.+.+.
T Consensus       163 ~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998775

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=2.9e-33  Score=204.10  Aligned_cols=169  Identities=28%  Similarity=0.508  Sum_probs=150.0

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|.+|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||+|++.+..++..++.++|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            45667999999999999999999987777777778888989888888899999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+......  .+...++...+++++++||++|.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  167 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFL  167 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999998874 57899999999998654432  356678888899999999999999999999


Q ss_pred             HHHHHHHhhCCC
Q 048059          166 EIAKRLARVSPP  177 (198)
Q Consensus       166 ~l~~~~~~~~~~  177 (198)
                      +|.+.+......
T Consensus       168 ~l~~~l~~~~~~  179 (221)
T 3gj0_A          168 WLARKLIGDPNL  179 (221)
T ss_dssp             HHHHHHHTCTTC
T ss_pred             HHHHHHHhCccc
Confidence            999999876554

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=5.5e-33  Score=199.15  Aligned_cols=168  Identities=19%  Similarity=0.263  Sum_probs=130.9

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA   83 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   83 (198)
                      ++.....||+|+|.+|||||||+++|+++.+.. .+.++.+.....    +....+.+.+|||+|++.+..++..+++++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            356678999999999999999999999988877 677888754332    234567899999999999999999999999


Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCC--------CCceEEEEEeCCCCCCCCCCCHHHHH-HH-----HHHcCCeE
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGN--------QIVVMALAANKSDLDSQREVPTEEGE-QF-----SQENGMFY  149 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~-----~~~~~~~~  149 (198)
                      |++|+|||++++++++.+..|+..+.....        ...|+++|+||+|+.....  .++.. .+     +...++++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence            999999999999999999888887765311        3789999999999976532  22221 11     14467899


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHhhCCCC
Q 048059          150 IETSAKTAQNINELFYEIAKRLARVSPPK  178 (198)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  178 (198)
                      +++||++|.|++++|++|.+.+.+.....
T Consensus       166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~  194 (199)
T 4bas_A          166 FASNGLKGTGVHEGFSWLQETASRQSGKA  194 (199)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred             EEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999998876543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=7e-31  Score=188.55  Aligned_cols=168  Identities=39%  Similarity=0.670  Sum_probs=149.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++.++++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            34699999999999999999999998887778888888887888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||+++..+++.+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999998889888876655678999999999998777777888999999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 048059          168 AKRLARVS  175 (198)
Q Consensus       168 ~~~~~~~~  175 (198)
                      .+.+.+..
T Consensus       163 ~~~~~~~~  170 (199)
T 2f9l_A          163 LTEIYRIV  170 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=4.8e-32  Score=189.65  Aligned_cols=161  Identities=20%  Similarity=0.344  Sum_probs=128.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+...  ..+.+.  ...+.+|||||++.+...+..+++++|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            34689999999999999999999988764 4556666443  333343  567899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQF-----SQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.....  .++....     +...+++++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999999988887776542 25789999999999865432  2222222     22346689999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 048059          162 ELFYEIAKRLARVS  175 (198)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (198)
                      ++|++|.+.+.+++
T Consensus       158 ~l~~~l~~~i~~~q  171 (171)
T 1upt_A          158 EAMEWLVETLKSRQ  171 (171)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999999887653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.98  E-value=1.6e-32  Score=195.47  Aligned_cols=161  Identities=22%  Similarity=0.328  Sum_probs=130.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+.++..  +  ....+.+.+|||||++.+...+..++.++|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            4557999999999999999999999988877788888876543  2  23457789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNI  160 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  160 (198)
                      |+|||++++++++.+..|+..+... ...+.|+++|+||+|+....  ..++......     ..+++++++||++|.|+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            9999999999999998888877653 22678999999999986532  2222222211     23567999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 048059          161 NELFYEIAKRLAR  173 (198)
Q Consensus       161 ~~~~~~l~~~~~~  173 (198)
                      +++|++|.+.+.+
T Consensus       173 ~~l~~~l~~~~~~  185 (188)
T 1zd9_A          173 DITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999886644

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.98  E-value=5.3e-31  Score=187.76  Aligned_cols=161  Identities=21%  Similarity=0.282  Sum_probs=129.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ-FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ....+||+|+|.+|||||||+++|++.. +...+.++.+..  ...+.+++  +.+.+|||+|++.+...+..++.++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            4557999999999999999999999877 455666777643  44444443  678999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQGN---QIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTA  157 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  157 (198)
                      +|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+..  ....++...+..     ..+++++++||++|
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            9999999999999999988888877533   5789999999999864  334555655553     23678999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 048059          158 QNINELFYEIAKRLAR  173 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~  173 (198)
                      .|++++|++|.+.+.+
T Consensus       172 ~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             BTHHHHHHHHHHHC--
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999987654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.98  E-value=2.4e-30  Score=184.74  Aligned_cols=165  Identities=39%  Similarity=0.667  Sum_probs=149.6

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      .+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..++.+++++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            34579999999999999999999999988888889999888888888899889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      ++|||.++..+++.+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++++|++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999998888988877665567899999999999877777788999999999999999999999999999999


Q ss_pred             HHHHH
Q 048059          167 IAKRL  171 (198)
Q Consensus       167 l~~~~  171 (198)
                      |.+.+
T Consensus       186 l~~~i  190 (191)
T 1oix_A          186 ILTEI  190 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98865

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.98  E-value=2e-31  Score=191.28  Aligned_cols=156  Identities=19%  Similarity=0.202  Sum_probs=122.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...++|+++|++|||||||+++|.++.+. .+.+|.+.+.  ..+.+++  +.+.+|||||++.+...+..+++++|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            34689999999999999999999987753 4556766653  3444554  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeE
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-----------------NGMFY  149 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  149 (198)
                      +|||++++++++.+..|+..+... ...+.|+++|+||+|+..  .+..+++.+++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999999998887664 235789999999999865  5566777776652                 34689


Q ss_pred             EEEccCCCCCHHHHHHHHHHH
Q 048059          150 IETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      +++||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.98  E-value=1e-30  Score=185.60  Aligned_cols=160  Identities=20%  Similarity=0.253  Sum_probs=130.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|++|||||||+++|+++. ...+.++.+...  ..+.++  ...+.+|||||++.+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999887 666777777543  333343  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++.+++.+..|+..+... ...+.|+++|+||+|+.....  .++..+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            999999999999998888877654 235789999999999865432  333333222     346689999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 048059          162 ELFYEIAKRLARV  174 (198)
Q Consensus       162 ~~~~~l~~~~~~~  174 (198)
                      ++|++|.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988765

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.98  E-value=7.3e-31  Score=187.21  Aligned_cols=156  Identities=20%  Similarity=0.217  Sum_probs=127.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.+  ...+.+++  +.+.+|||||++.+...+..+++++|++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999988764 456776665  34444554  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE------------NGMFYIETSA  154 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  154 (198)
                      +|||++++++++.+..|+..+... ...+.|+++|+||+|+..  .+..+++.++...            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999999998887653 235789999999999865  4556666665432            3568999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 048059          155 KTAQNINELFYEIAKR  170 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~  170 (198)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=2.5e-32  Score=189.93  Aligned_cols=156  Identities=20%  Similarity=0.351  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+++|++|||||||+++|+++.+.. +.||.+..  ...+..  ..+.+.+|||||++.+...+..++.++|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 55676643  233333  4467899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      |++++++++.+..|+..+... ...+.|+++|+||+|+....  ..++.....     ...+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999998888877653 33578999999999986532  222222221     1235679999999999999999


Q ss_pred             HHHHHHHHh
Q 048059          165 YEIAKRLAR  173 (198)
Q Consensus       165 ~~l~~~~~~  173 (198)
                      ++|.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=2.6e-31  Score=188.05  Aligned_cols=158  Identities=20%  Similarity=0.304  Sum_probs=125.3

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      .....+||+|+|.+|||||||+++|+++.+ ..+.++.+....  .+.+.+  +.+.+|||+|++.+...+..++.++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            455679999999999999999999998876 555677775543  333433  788999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQN  159 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~  159 (198)
                      +|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+...  ...++......     ..+++++++||++|.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999988888776542 367899999999998653  33444444332     2456899999999999


Q ss_pred             HHHHHHHHHHH
Q 048059          160 INELFYEIAKR  170 (198)
Q Consensus       160 i~~~~~~l~~~  170 (198)
                      ++++|++|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999999764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.7e-31  Score=187.13  Aligned_cols=163  Identities=20%  Similarity=0.290  Sum_probs=126.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...++|+++|++|||||||+++|+++.+. .+.+|.+....  .+.++  .+.+.+|||||++++...+..++.++|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            35699999999999999999999987765 56677765433  33343  378899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+...  ...++......     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999988887642 357899999999998653  33444444432     346689999999999999


Q ss_pred             HHHHHHHHHHHhhCCC
Q 048059          162 ELFYEIAKRLARVSPP  177 (198)
Q Consensus       162 ~~~~~l~~~~~~~~~~  177 (198)
                      ++|++|.+.+.+..+.
T Consensus       167 ~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             HHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999987655543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=6.6e-32  Score=192.94  Aligned_cols=159  Identities=19%  Similarity=0.346  Sum_probs=119.9

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+|+|++|||||||+++|+++.+. .+.+|.+..  ...+..  ..+.+.+|||||++.+...+..++.++|++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            45799999999999999999999987754 344555533  333333  4478899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++++++.+..|+..+... ...+.|+++|+||+|+....  ..++.....     ...+++++++||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            999999999999998888877653 23578999999999986542  222222211     1234679999999999999


Q ss_pred             HHHHHHHHHHHh
Q 048059          162 ELFYEIAKRLAR  173 (198)
Q Consensus       162 ~~~~~l~~~~~~  173 (198)
                      ++|++|.+.+.+
T Consensus       180 ~l~~~l~~~i~~  191 (192)
T 2b6h_A          180 DGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999987753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.5e-33  Score=203.14  Aligned_cols=163  Identities=25%  Similarity=0.431  Sum_probs=138.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            35679999999999999999999998887766667765544 34455667778889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEE
Q 048059           87 VVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR------------EVPTEEGEQFSQENGM-FYIET  152 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~  152 (198)
                      |+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+....            .+..+++..+++..++ +++++
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            9999999999999886 7888776653 378999999999996542            4556777888888887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 048059          153 SAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=7.6e-30  Score=196.30  Aligned_cols=163  Identities=24%  Similarity=0.412  Sum_probs=144.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..++|+++|.+|+|||||+++++++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            358999999999999999999999888777778776555 4556778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcc
Q 048059           89 VYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSA  154 (198)
Q Consensus        89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa  154 (198)
                      |||++++.+++.+. .|+..+.... .+.|+++|+||+|+...            +.+..+++..++...++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999986 7888887764 37899999999998543            67788999999999997 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q 048059          155 KTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~  173 (198)
                      ++|.|++++|++|.+.+..
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=1.3e-31  Score=190.08  Aligned_cols=164  Identities=19%  Similarity=0.336  Sum_probs=123.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCcceeEEEEEEEe---CCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG--QFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTAGQERYHSLAPMYYRGAA   84 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   84 (198)
                      .+||+|+|++|||||||+++|.+.  .+...+.++.+.++....+..   .+..+.+.+|||+|++.+..+++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  444556778887766655443   235678999999999999999999999999


Q ss_pred             eEEEEEECCCh-hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCe----EEEEccCC
Q 048059           85 AAVVVYDISNM-DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP---TEEGEQFSQENGMF----YIETSAKT  156 (198)
Q Consensus        85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~  156 (198)
                      ++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+...+.+.   .+....++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 57899999999887764 468999999999986543321   23345566667776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHhh
Q 048059          157 AQ-NINELFYEIAKRLARV  174 (198)
Q Consensus       157 ~~-~i~~~~~~l~~~~~~~  174 (198)
                      +. +++++++.|.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC
T ss_pred             CchhHHHHHHHHHHHHhcc
Confidence            97 9999999998877653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=1.8e-31  Score=190.02  Aligned_cols=161  Identities=22%  Similarity=0.334  Sum_probs=127.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|++|||||||+++|.++.+. .+.+|.+...  ..+...  .+.+.+|||||++.+...+..+++++|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            45799999999999999999999877654 3556666443  333333  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQF-----SQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.....  .++....     +...+++++++||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999988887776542 35789999999999865432  2222222     12345689999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 048059          162 ELFYEIAKRLARVS  175 (198)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (198)
                      ++|++|.+.+.+.+
T Consensus       173 ~l~~~l~~~i~~~~  186 (189)
T 2x77_A          173 EGMDWLVERLREQG  186 (189)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=1.7e-31  Score=189.14  Aligned_cols=159  Identities=20%  Similarity=0.279  Sum_probs=124.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...++|+++|++|||||||+++|.+..+ ..+.++.+...  ..+.++  .+.+.+|||||++.+...+..++.++|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            4579999999999999999999998753 34456666443  333344  467899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++++++.+..|+..+... ...+.|+++|+||+|+.....  .++.....     ...+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999998888776543 235689999999999865433  23332221     1235679999999999999


Q ss_pred             HHHHHHHHHHHh
Q 048059          162 ELFYEIAKRLAR  173 (198)
Q Consensus       162 ~~~~~l~~~~~~  173 (198)
                      ++|++|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=2.7e-31  Score=190.32  Aligned_cols=161  Identities=20%  Similarity=0.293  Sum_probs=122.3

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEE--EEEe-CCcEEEEEEEeCCCchhhcccc---hhh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSL-SEATVKFDIWDTAGQERYHSLA---PMY   79 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~D~~g~~~~~~~~---~~~   79 (198)
                      +....+||+++|++|||||||++++.+.. ...  ++.+.++...  ...+ .+..+.+.+|||+|++.|....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            45668999999999999999999887643 222  3333333222  2223 2566789999999999987766   899


Q ss_pred             hcCCCeEEEEEECCCh--hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC-------CCCCCHHHHHHHHH----HcC
Q 048059           80 YRGAAAAVVVYDISNM--DTFNRANKLVQELQRQGNQIVVMALAANKSDLDS-------QREVPTEEGEQFSQ----ENG  146 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-------~~~~~~~~~~~~~~----~~~  146 (198)
                      ++++|++|+|||++++  ++++.+..|+..+... ..+.|+++|+||+|+..       .+.+..+....++.    .++
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            9999999999999987  6667777777776543 35789999999999754       23455566777777    678


Q ss_pred             CeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          147 MFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       147 ~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ++++++||++ .|++++|+.|++.+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            8999999999 99999999998865

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1.4e-30  Score=184.30  Aligned_cols=161  Identities=24%  Similarity=0.332  Sum_probs=126.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|++|||||||+++|+++.+ ..+.++.+...  ..+.+.  ...+.+|||||++.+...+..++.++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998776 55667777543  333343  377899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQE-----NGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...  ...++..+....     .+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888776643 467899999999998653  233444443321     34579999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 048059          162 ELFYEIAKRLARVS  175 (198)
Q Consensus       162 ~~~~~l~~~~~~~~  175 (198)
                      ++|++|.+.+.+++
T Consensus       169 ~l~~~l~~~~~~~q  182 (183)
T 1moz_A          169 EGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.5e-31  Score=195.58  Aligned_cols=167  Identities=19%  Similarity=0.255  Sum_probs=125.3

Q ss_pred             CCCceeeeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCCc-ceeEEEEEE--------------EeCC
Q 048059            4 PGNKIIQAKLVLLGDM---------GTGKTSLALRFIK---GQFYDQQEPTI-GAAFFTQIL--------------SLSE   56 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~---------~sGKssli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~   56 (198)
                      +...+..+||+|+|.+         |||||||+++|++   ..+...+.++. +.++....+              .+++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3455667999999999         9999999999998   44555555554 333221111              1355


Q ss_pred             cEEEEEEEe-----------------------CCCchhhcccchhhhc---------------------CCCeEEEEEEC
Q 048059           57 ATVKFDIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAVVVYDI   92 (198)
Q Consensus        57 ~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~   92 (198)
                      ..+.+.|||                       ++|++++..++..++.                     ++|++|+|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            678899999                       6677777777777777                     79999999999


Q ss_pred             CCh--hhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCHHHHHHHHH
Q 048059           93 SNM--DTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        93 ~~~--~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      +++  .+++.+..|+..+... ...+.|+++|+||+|+...+.+  +++..++.. .+++++++||++|.|++++|++|.
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            998  9999999999888765 3356899999999998654433  567777776 488999999999999999999999


Q ss_pred             HHHH
Q 048059          169 KRLA  172 (198)
Q Consensus       169 ~~~~  172 (198)
                      +.+.
T Consensus       251 ~~l~  254 (255)
T 3c5h_A          251 QLID  254 (255)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=3e-29  Score=174.92  Aligned_cols=154  Identities=19%  Similarity=0.203  Sum_probs=114.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc------cchhhhc-
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS------LAPMYYR-   81 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~-   81 (198)
                      ..++|+++|++|||||||+++|++..+.....++.+.+.....+.+.+  ..+.+|||||++.+..      +...++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            358999999999999999999998765544445444444444444443  5788999999887642      3355554 


Q ss_pred             -CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           82 -GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        82 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                       ++|++++|+|.++.+.   ...|+..+..   .+.|+++|+||+|+...+.+.. +...++..++++++++||++|.|+
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence             8999999999987543   3456666654   3579999999999864444432 367788888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 048059          161 NELFYEIAKRL  171 (198)
Q Consensus       161 ~~~~~~l~~~~  171 (198)
                      +++|++|.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=2.1e-29  Score=182.69  Aligned_cols=160  Identities=24%  Similarity=0.277  Sum_probs=114.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc-EEEEEEEeCCCchhhcc-cchhhhcCCC
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA-TVKFDIWDTAGQERYHS-LAPMYYRGAA   84 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d   84 (198)
                      ....+||+++|++|||||||+++|+++.+...+.+ .+.++..  +.+++. .+.+.+|||||++.+.. ++..+++++|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            34579999999999999999999999887666543 3344333  455544 67899999999999987 8889999999


Q ss_pred             eEEEEEECCChh-hHHHHHH-HHHHHHHh--CCCCceEEEEEeCCCCCCCCCCCHHHHHHH-------------------
Q 048059           85 AAVVVYDISNMD-TFNRANK-LVQELQRQ--GNQIVVMALAANKSDLDSQREVPTEEGEQF-------------------  141 (198)
Q Consensus        85 ~~i~v~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-------------------  141 (198)
                      ++|+|||+++.. ++..... |...+...  .....|+++|+||+|+...... .+....+                   
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA-KLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH-HHHHHHHHHHHHHHHHHCC-------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH-HHHHHHHHHHHHHHhccchhcccccc
Confidence            999999999854 4555544 44444432  3456899999999999754432 1111111                   


Q ss_pred             ----------------HH-Hc--CCeEEEEccCCC------CCHHHHHHHHHHH
Q 048059          142 ----------------SQ-EN--GMFYIETSAKTA------QNINELFYEIAKR  170 (198)
Q Consensus       142 ----------------~~-~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~  170 (198)
                                      +. .+  +++|++|||++|      .|++++|++|.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                            11 11  668999999999      9999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=5.1e-28  Score=170.21  Aligned_cols=162  Identities=17%  Similarity=0.152  Sum_probs=120.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....++|+++|++|||||||+++|++..+...+.++.+.+.....+.+++  ..+.+|||||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            34578999999999999999999999887766666665555455555555  3567999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-------C--CeEEEEccCCC
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-------G--MFYIETSAKTA  157 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  157 (198)
                      |+|||++++...+... +   +......+.|+++|+||+|+...   ..+.........       +  ++++++||++|
T Consensus        83 i~v~d~~~~~~~~~~~-~---l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVE-A---INHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEEETTCCCCHHHHH-H---HHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEEECCCCCcHHHHH-H---HHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            9999998843222211 1   12222346799999999998653   223333333222       2  58999999999


Q ss_pred             CCHHHHHHHHHHHHHhhCCC
Q 048059          158 QNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~~~  177 (198)
                      .|++++|++|.+.+.....+
T Consensus       156 ~gv~~l~~~l~~~~~~~~~~  175 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEMEELK  175 (178)
T ss_dssp             HHHHHHHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHhhhhhccc
Confidence            99999999999987765543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=5.2e-28  Score=177.09  Aligned_cols=165  Identities=14%  Similarity=0.092  Sum_probs=116.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch------hh---cccchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE------RY---HSLAPM   78 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~~---~~~~~~   78 (198)
                      ...++|+|+|++|||||||+++|++..+.....+....+........  ....+.+|||||..      ..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            45799999999999999999999987654222222222222222222  23678999999983      21   112234


Q ss_pred             hhcCCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH---HHHHHHHHcC--CeEEE
Q 048059           79 YYRGAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE---EGEQFSQENG--MFYIE  151 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~  151 (198)
                      ++..+|++|+|||++++.+++  ....|+..+... ....|+++|+||+|+...+.+..+   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            578899999999999987764  223555555443 246899999999999776666554   4566677776  89999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHhhC
Q 048059          152 TSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      +||++|.|++++|++|.+.+.+..
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=2.1e-29  Score=193.65  Aligned_cols=159  Identities=20%  Similarity=0.328  Sum_probs=119.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+|+|.+|||||||+++|+++.+... .+|.+..+..    +....+.+.||||||++.+..++..++.++|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            457999999999999999999998775433 3555544322    23345789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~  162 (198)
                      |||++++.+++.+..|+..+... ...+.|++||+||+|+.....  .++......     ..+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            99999999999998777666553 335789999999999865432  222222221     1345799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 048059          163 LFYEIAKRLARV  174 (198)
Q Consensus       163 ~~~~l~~~~~~~  174 (198)
                      +|++|.+.+.++
T Consensus       317 l~~~l~~~l~~~  328 (329)
T 3o47_A          317 GLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999987653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=2.3e-28  Score=186.31  Aligned_cols=160  Identities=19%  Similarity=0.301  Sum_probs=127.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-----cccchhhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY---DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-----HSLAPMYY   80 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~   80 (198)
                      ..+||+++|++|||||||+++|+++...   ..+.+|.+..+..  +.+.+ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999986322   2455666665443  33333 678999999999988     77889999


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHh--CCCCceEEEEEeCCCCCC--CCC----CCHHHHHHHHHHcC---CeE
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQ--GNQIVVMALAANKSDLDS--QRE----VPTEEGEQFSQENG---MFY  149 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~iiv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~  149 (198)
                      +++|++|+|||++++++++.+..|...+...  ..++.|+++++||+|+..  .+.    +..+++.+++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            9999999999999999999987775555442  135789999999999875  343    55577888998887   799


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHH
Q 048059          150 IETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      +++||++ .++.++|..++..+.
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHc
Confidence            9999999 889999999887553

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=2.5e-28  Score=173.54  Aligned_cols=158  Identities=18%  Similarity=0.172  Sum_probs=120.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC-----------chhhcccchhh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG-----------QERYHSLAPMY   79 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~   79 (198)
                      +||+++|++|||||||+++|++..+...+.++.+..  ...+...    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            689999999999999999999988766665554433  2333333    578999999           67777788888


Q ss_pred             hcC-CCeEEEEEECCChhhHHHH-HHHHHH--------H-HHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 048059           80 YRG-AAAAVVVYDISNMDTFNRA-NKLVQE--------L-QRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF  148 (198)
Q Consensus        80 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  148 (198)
                      +.+ +++++++|++.+..+++.+ ..|...        + ........|+++|+||+|+...+   .+....++..++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            877 8877777777777788776 556542        2 22223568999999999986544   56778888888874


Q ss_pred             -------EEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          149 -------YIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       149 -------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                             ++++||++|.|++++|++|.+.+.+...+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence                   79999999999999999999988776553

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=2.6e-29  Score=190.53  Aligned_cols=156  Identities=19%  Similarity=0.230  Sum_probs=120.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---cchhhhcCCCe
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYD---QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---LAPMYYRGAAA   85 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~   85 (198)
                      ||+++|+.|||||||++++.++....   ...+|+|.++..    ++ ..+++++|||+|+++|..   .++.|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654332   256788877643    22 347899999999999975   36899999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEE
Q 048059           86 AVVVYDISNM--DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ-------REVPTEEGEQFSQE----NGMFYIET  152 (198)
Q Consensus        86 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~  152 (198)
                      +|+|||+++.  ++++.+..|+..+... .++.|+++++||+|+...       +++..++++++++.    ++++|+++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  2333333444444444 367999999999999754       34666777778875    68899999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHhh
Q 048059          153 SAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       153 Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ||++ .+|.++|..+++.+.+.
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTT
T ss_pred             ccCC-CcHHHHHHHHHHHHHhh
Confidence            9998 58999999999877654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=5.8e-28  Score=171.53  Aligned_cols=160  Identities=19%  Similarity=0.191  Sum_probs=122.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc------ccchhhh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH------SLAPMYY   80 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~   80 (198)
                      .+..++|+++|++|||||||+++|++..+.....++.+.+.....+...+  ..+.+|||||++.+.      ..+..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            34679999999999999999999998765444455555554455555543  678899999998764      3455555


Q ss_pred             c--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059           81 R--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ  158 (198)
Q Consensus        81 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (198)
                      .  .++++++|+|.++   ++....|+..+..   .+.|+++|+||+|+...+.+. +....+++.++++++++||+++.
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence            4  5999999999875   4555667666654   457999999999986544443 35677888889999999999999


Q ss_pred             CHHHHHHHHHHHHHhhC
Q 048059          159 NINELFYEIAKRLARVS  175 (198)
Q Consensus       159 ~i~~~~~~l~~~~~~~~  175 (198)
                      |++++|++|.+.+.+..
T Consensus       155 ~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          155 GIEELKKAISIAVKDKK  171 (188)
T ss_dssp             SHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999887655

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=4.9e-28  Score=172.83  Aligned_cols=159  Identities=16%  Similarity=0.175  Sum_probs=109.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC----------chhhcccc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG----------QERYHSLA   76 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~   76 (198)
                      ....++|+|+|++|||||||+++|++..+.....++.+.+........+.   .+.+|||||          ++.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34569999999999999999999998876555666666555444444443   578999999          77777778


Q ss_pred             hhhhcCC---CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH--HHHHH-HHHHcCCeEE
Q 048059           77 PMYYRGA---AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT--EEGEQ-FSQENGMFYI  150 (198)
Q Consensus        77 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~~  150 (198)
                      ..++..+   |++++|+|++++.++.... ++..+..   ...|+++|+||+|+...+.+..  +++.+ ++...+++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI  172 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence            8888777   9999999999877766543 2222222   4579999999999876543321  22222 2223467999


Q ss_pred             EEccCCCCCHHHHHHHHHHHHH
Q 048059          151 ETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      ++||++|.|++++|++|.+.+.
T Consensus       173 ~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          173 LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEccCCCCHHHHHHHHHHHhc
Confidence            9999999999999999988764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.95  E-value=7.4e-28  Score=196.14  Aligned_cols=166  Identities=17%  Similarity=0.242  Sum_probs=127.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEE------E--EeCCcEEEEEEEeCCCchhhcccch
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQI------L--SLSEATVKFDIWDTAGQERYHSLAP   77 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~D~~g~~~~~~~~~   77 (198)
                      .....+||+++|.+|||||||+++|++..+...+.++.+.++....      +  ...+..+.+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3456799999999999999999999998888778888888776542      1  1223457899999999999999999


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA  157 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (198)
                      .+++.+|++|+|||+++.   +.+..|+..+.... .+.|+++|+||+|+...+.+..++...++...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999998765   55677888887764 46899999999999887888888889999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhC
Q 048059          158 QNINELFYEIAKRLARVS  175 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~~~  175 (198)
                      .|+++++++|.+.+.+..
T Consensus       193 ~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             --CTTHHHHHHHHHTCTT
T ss_pred             cCHHHHHHHHHHHHhccc
Confidence            999999999999887643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=1.2e-27  Score=168.04  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=112.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMY   79 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   79 (198)
                      ..++|+|+|++|||||||+++|++.... ....++.+.++....+.+++.  .+.+|||||.+.+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999986542 222333344444555666653  4789999998643211        1235


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (198)
                      ++++|++++|||++++.+++. ..|+..+......+.|+++|+||+|+.....       .++...+++++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            789999999999999888763 4677777766556789999999999854221       11223467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048059          160 INELFYEIAKRLA  172 (198)
Q Consensus       160 i~~~~~~l~~~~~  172 (198)
                      ++++|++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=3.2e-27  Score=163.43  Aligned_cols=150  Identities=22%  Similarity=0.184  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-------hcccchhhhcC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-------YHSLAPMYYRG   82 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~   82 (198)
                      .||+++|++|||||||+++|.+..+. ....++.+.+.....+...+  ..+.+|||||...       +...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999987643 12223333333344444444  3678999999876       34456677899


Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNIN  161 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~  161 (198)
                      +|++++|||.+++.+... ..+...+..   .+.|+++|+||+|+....    +++.+++ ..++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999987543322 122222222   357899999999986542    2334444 5677 89999999999999


Q ss_pred             HHHHHHHHHH
Q 048059          162 ELFYEIAKRL  171 (198)
Q Consensus       162 ~~~~~l~~~~  171 (198)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=1.5e-26  Score=172.15  Aligned_cols=156  Identities=19%  Similarity=0.154  Sum_probs=117.9

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc------hhhh-
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA------PMYY-   80 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~-   80 (198)
                      ...++|+++|++|||||||+++|++..+.....+..+.+.....+  ......+.+|||||...+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVF--TYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEE--EETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEE--EECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            457999999999999999999999877654444544433333333  3334678999999997766533      4555 


Q ss_pred             -cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059           81 -RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        81 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (198)
                       ..+|++++|+|+++.++.   ..|...+..   .+.|+++++||+|+...+.+.. ....+++.++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             589999999999986543   235544443   3579999999999865444432 36788888999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048059          160 INELFYEIAKRLA  172 (198)
Q Consensus       160 i~~~~~~l~~~~~  172 (198)
                      ++++|++|.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=2.4e-26  Score=175.25  Aligned_cols=167  Identities=14%  Similarity=0.080  Sum_probs=124.7

Q ss_pred             CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc-EEEEEEEeCCCchhhc---------
Q 048059            4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA-TVKFDIWDTAGQERYH---------   73 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~---------   73 (198)
                      .+++.+.-.|+++|.+|||||||+++|++..+.... +..+.+........... ..++.||||||.....         
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence            345666789999999999999999999998764221 22222221221112222 5678899999985433         


Q ss_pred             -ccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEE
Q 048059           74 -SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYI  150 (198)
Q Consensus        74 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~  150 (198)
                       ..+..++..+|++++|+|++++.+.+....|+..+..   .+.|+++|+||+|+........+....+...++  .+++
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence             4566778899999999999998888887777777655   357999999999987445555677778888775  7899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHhh
Q 048059          151 ETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ++||++|.|++++|++|...+.+.
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             EEeCCCCCCHHHHHHHHHHhCccC
Confidence            999999999999999999887554

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=2.8e-26  Score=163.47  Aligned_cols=157  Identities=17%  Similarity=0.162  Sum_probs=113.6

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC----------chhhcccc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG----------QERYHSLA   76 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~   76 (198)
                      ....++|+|+|++|||||||+++|++.. .....++.+.+..........   .+.+|||||          ++.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence            3456899999999999999999999876 334445555554444433333   467999999          66777777


Q ss_pred             hhhhcCC---CeEEEEEECCChhhH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHHHHHHHHHHc-CCe
Q 048059           77 PMYYRGA---AAAVVVYDISNMDTF--NRANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTEEGEQFSQEN-GMF  148 (198)
Q Consensus        77 ~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~-~~~  148 (198)
                      ..++..+   |++++|+|.++..+.  ..+..|+..      .+.|+++|+||+|+....  ....++...++... +++
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT  169 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence            7787766   999999998775433  233334333      257999999999986432  22334555555553 479


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          149 YIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ++++||++|.|++++|++|.+.+.+
T Consensus       170 ~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          170 IIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             eEEEecCCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999987754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=1.1e-26  Score=173.86  Aligned_cols=153  Identities=19%  Similarity=0.180  Sum_probs=115.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc------ccchhhhc--
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH------SLAPMYYR--   81 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~--   81 (198)
                      .++|+++|++|||||||+++|++........+  |.++......+.. ...+.+|||||+..+.      ..+..++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            57999999999999999999998764444434  3343344444454 5678899999997765      34455665  


Q ss_pred             CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059           82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      ++|++|+|+|+++.++.   ..|...+..   .+.|+++++||+|+...+.+. .....++..++++++++||++|.|++
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~  152 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD  152 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence            69999999999876543   345555544   457999999999986444433 34677888899999999999999999


Q ss_pred             HHHHHHHHHHH
Q 048059          162 ELFYEIAKRLA  172 (198)
Q Consensus       162 ~~~~~l~~~~~  172 (198)
                      ++|++|.+.+.
T Consensus       153 el~~~i~~~~~  163 (272)
T 3b1v_A          153 QVVKKAAHTTT  163 (272)
T ss_dssp             HHHHHHHHSCT
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=1.3e-26  Score=172.17  Aligned_cols=151  Identities=17%  Similarity=0.130  Sum_probs=115.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----------cchhhh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----------LAPMYY   80 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~   80 (198)
                      .+|+++|++|||||||+++|++........++.+.+.....+...+.  .+.+|||||...+..          .+..++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999988755555566555555555555553  788999999876653          445566


Q ss_pred             --cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059           81 --RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ  158 (198)
Q Consensus        81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (198)
                        .++|++|+|+|+++.++...+..++.      ..+.|+++++||+|+...+... .....++..++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence              89999999999998665544433322      2367999999999986444332 22456778889999999999999


Q ss_pred             CHHHHHHHHHHH
Q 048059          159 NINELFYEIAKR  170 (198)
Q Consensus       159 ~i~~~~~~l~~~  170 (198)
                      |++++|++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999876

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=2.8e-26  Score=167.09  Aligned_cols=166  Identities=13%  Similarity=0.101  Sum_probs=111.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCc----------hhhcccc
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQ----------ERYHSLA   76 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~----------~~~~~~~   76 (198)
                      ...++|+|+|.+|||||||+++|++.........+.+.+......... .....+.||||||.          +.+...+
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            446899999999999999999999876333333444444434444444 44567889999994          4445566


Q ss_pred             hhhhcC---CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC--HHHHHHHHHH-------
Q 048059           77 PMYYRG---AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP--TEEGEQFSQE-------  144 (198)
Q Consensus        77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~-------  144 (198)
                      ..++..   +|++++|+|.+++.+. ....|+..+..   ...|+++|+||+|+.......  .+...+....       
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA  182 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence            666665   7789999999875332 22334444433   457999999999986533211  1122222222       


Q ss_pred             cCCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          145 NGMFYIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      .+++++++||++|.|++++|++|.+.+.+...+
T Consensus       183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~~  215 (223)
T 4dhe_A          183 GKLTVQLFSALKRTGLDDAHALIESWLRPAAAD  215 (223)
T ss_dssp             SCEEEEEEBTTTTBSHHHHHHHHHHHHC-----
T ss_pred             CCCeEEEeecCCCcCHHHHHHHHHHhcCccCCc
Confidence            467899999999999999999999988665543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=2e-25  Score=167.38  Aligned_cols=160  Identities=21%  Similarity=0.192  Sum_probs=120.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc------cchhhh--
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS------LAPMYY--   80 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--   80 (198)
                      +.++|+++|++|||||||+++|++..+.....++.+.+.....+...+  ..+.+|||||...+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            458999999999999999999998876555556666665555555544  4588999999877665      455555  


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      .++|++++|+|+++.+   ....|...+...  ...|+++++||+|+...+.... ....+++.++++++++||++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence            6899999999998753   333344444443  2279999999999754333222 267788889999999999999999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 048059          161 NELFYEIAKRLARVSP  176 (198)
Q Consensus       161 ~~~~~~l~~~~~~~~~  176 (198)
                      +++++++...+.....
T Consensus       154 ~~l~~~i~~~~~~~~~  169 (271)
T 3k53_A          154 EELKRMIALMAEGKVT  169 (271)
T ss_dssp             HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhcccc
Confidence            9999999998765443

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=7e-26  Score=170.00  Aligned_cols=155  Identities=18%  Similarity=0.153  Sum_probs=114.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc----------chh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL----------APM   78 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~   78 (198)
                      ..++|+++|++|||||||+++|++..+.....++.+.+.....+...+  ..+.+|||||...+...          +..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            468999999999999999999998875545555555555455555444  45779999998766521          223


Q ss_pred             hh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059           79 YY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT  156 (198)
Q Consensus        79 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (198)
                      ++  .++|++|+|+|+++.+....+.   ..+...   +.|+++|+||+|+...+... .....+++.++++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLT---LQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            33  6899999999998865544433   333332   57999999999985443332 234677788899999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 048059          157 AQNINELFYEIAKRLA  172 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~  172 (198)
                      |.|+++++++|.+.+.
T Consensus       153 g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKA  168 (274)
T ss_dssp             GHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999877554

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=2.3e-26  Score=167.02  Aligned_cols=144  Identities=17%  Similarity=0.207  Sum_probs=107.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcC-
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ---QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG-   82 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~-   82 (198)
                      ....++|+++|++|||||||+++|.+..+...   +.++.+.+         .....+.+|||||++.+...+..++.. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            34569999999999999999999998775432   22332222         144568899999999998888888877 


Q ss_pred             ---CCeEEEEEECC-ChhhHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCCCCCCCC------HHHHHHHHHHcCCe
Q 048059           83 ---AAAAVVVYDIS-NMDTFNRANKLVQELQRQ----GNQIVVMALAANKSDLDSQREVP------TEEGEQFSQENGMF  148 (198)
Q Consensus        83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~  148 (198)
                         +|++|+|||++ ++.+++.+..|+..+...    .....|+++|+||+|+...+.+.      .+++..++...+++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888998888887777653    34678999999999997766543      45567777777888


Q ss_pred             EEEEccCCCCC
Q 048059          149 YIETSAKTAQN  159 (198)
Q Consensus       149 ~~~~Sa~~~~~  159 (198)
                      ++++||++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=2e-24  Score=172.77  Aligned_cols=156  Identities=15%  Similarity=0.143  Sum_probs=98.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc--------hhhh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA--------PMYY   80 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~   80 (198)
                      .++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++  +.+.+|||||...+...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            589999999999999999999986432 22333333333334444544  578899999987765443        3367


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      .++|++++|||.+++.+++++..+...+...  .+.|+++|+||+|+......   ....+......+++++||++|.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence            8999999999999988775443333333332  26899999999998765432   223344433478999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048059          161 NELFYEIAKRLA  172 (198)
Q Consensus       161 ~~~~~~l~~~~~  172 (198)
                      ++++++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999886

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=2e-24  Score=171.93  Aligned_cols=161  Identities=20%  Similarity=0.155  Sum_probs=113.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc----------hhhcccch
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ----------ERYHSLAP   77 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~   77 (198)
                      ..+||+++|.+|||||||+++|++.... ....++.+.+.....+..++.  .+.||||||+          +.|.....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            4589999999999999999999987643 223333333333334444443  5789999998          44443333


Q ss_pred             -hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEE
Q 048059           78 -MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ-FSQE----NGMFYIE  151 (198)
Q Consensus        78 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~  151 (198)
                       .+++.+|++++|+|++++.+.+.. .|+..+..   .+.|+++++||+|+.+.+....++..+ +...    .++++++
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence             477889999999999998877665 46655544   457999999999997665544333322 2222    3679999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHhhC
Q 048059          152 TSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      +||++|.|++++|+.+.+.+....
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EecccCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999998877654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.91  E-value=5.9e-25  Score=166.80  Aligned_cols=157  Identities=20%  Similarity=0.162  Sum_probs=107.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--------hcccchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--------YHSLAPM   78 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~   78 (198)
                      ....+|+|+|.+|||||||+++|++..+.. ...+..........  ......++.||||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            456789999999999999999999877642 22222111211112  223456789999999865        3445667


Q ss_pred             hhcCCCeEEEEEECCChhhHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEccC
Q 048059           79 YYRGAAAAVVVYDISNMDTFNRANKLV-QELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN--GMFYIETSAK  155 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~  155 (198)
                      +++.+|++++|||++++.+..  ..|+ ..+.... .+.|+++|+||+|+.....    ........+  ..+++++||+
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~  155 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSAL  155 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTT
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCC
Confidence            789999999999998764433  2333 4444332 4689999999999864322    022233332  3478999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 048059          156 TAQNINELFYEIAKRLAR  173 (198)
Q Consensus       156 ~~~~i~~~~~~l~~~~~~  173 (198)
                      +|.|+++++++|...+.+
T Consensus       156 ~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          156 DERQVAELKADLLALMPE  173 (301)
T ss_dssp             CHHHHHHHHHHHHTTCCB
T ss_pred             CCCCHHHHHHHHHHhccc
Confidence            999999999999876643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=3e-24  Score=171.73  Aligned_cols=164  Identities=20%  Similarity=0.149  Sum_probs=118.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC----------chhhcccc
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG----------QERYHSLA   76 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~   76 (198)
                      ...++|+++|.+|+|||||+++|++... .....++.+.+.....+...+.  .+.||||||          ++.+...+
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            3468999999999999999999997542 2223333333332334444443  688999999          56666655


Q ss_pred             h-hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEE
Q 048059           77 P-MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-----GMFYI  150 (198)
Q Consensus        77 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~  150 (198)
                      . .+++.+|++|+|+|+++..+ ++...|+..+..   .+.|+++|+||+|+...+....++..+.+...     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            5 37789999999999987543 333445555544   45799999999999877777667777776654     58999


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          151 ETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      ++||++|.|++++|+++.+.+......
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~  373 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENHSLR  373 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999988766543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.5e-23  Score=162.83  Aligned_cols=162  Identities=18%  Similarity=0.169  Sum_probs=117.9

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---------cchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---------LAPM   78 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~   78 (198)
                      ...++|+++|.+|||||||+++|++........+..........+...  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            346899999999999999999999876432222222222222222222  45688999999753211         1123


Q ss_pred             hhcCCCeEEEEEECCChh--hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059           79 YYRGAAAAVVVYDISNMD--TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT  156 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (198)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.....  .++...++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence            445799999999998876  67777888888877543 689999999999865332  2445667777889999999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 048059          157 AQNINELFYEIAKRLARV  174 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (198)
                      |+|+++++++|.+.+.+.
T Consensus       320 g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999987654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=1e-24  Score=171.77  Aligned_cols=159  Identities=14%  Similarity=0.139  Sum_probs=114.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-------chh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-------APM   78 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~   78 (198)
                      ....++|+|+|.+|+|||||+++|++..+. ....+..+.+.....+...+.. .+.+|||||++.+..+       +..
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence            445699999999999999999999987653 2222333333334445555442 6889999999876654       344


Q ss_pred             hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059           79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ  158 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  158 (198)
                      ++.++|++|+|||++..   +....|+..+...   +.|+++|+||+|+......  +....++..++++++++||++|.
T Consensus       110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~  181 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKK  181 (423)
T ss_dssp             HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred             HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCC
Confidence            78899999999998332   3345566666554   5799999999999765554  66677777889999999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q 048059          159 NINELFYEIAKRLARV  174 (198)
Q Consensus       159 ~i~~~~~~l~~~~~~~  174 (198)
                      |++++|++|.+.+.+.
T Consensus       182 gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          182 GFDDIGKTISEILPGD  197 (423)
T ss_dssp             STTTHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHHhhhhh
Confidence            9999999999988554

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=8.7e-24  Score=163.13  Aligned_cols=119  Identities=18%  Similarity=0.270  Sum_probs=100.6

Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCC----------hhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN----------MDTFNRANKLVQELQRQ-GNQIVVMALAANKSD  126 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D  126 (198)
                      .+.+.+||++|++.++..|..++++++++|||||+++          ..++++...|+..+... ...+.|++|++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5788999999999999999999999999999999998          45688888888887764 336789999999999


Q ss_pred             CCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          127 LDSQR---------------EVPTEEGEQFSQ-----------ENGMFYIETSAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       127 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      +...+               .++.+++..++.           ..++.++++||+++.||+++|+++.+.+.+.+.
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l  347 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL  347 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence            84221               356788888886           356789999999999999999999999987654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.90  E-value=2.3e-22  Score=158.73  Aligned_cols=162  Identities=17%  Similarity=0.154  Sum_probs=106.8

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--CcceeEEEEEEEe-------------C--C----cEEEE
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQ---FYDQQEP--TIGAAFFTQILSL-------------S--E----ATVKF   61 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   61 (198)
                      .+...++|+++|+.++|||||+++|++..   +..+..+  |+...+....+..             .  +    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            44567999999999999999999998543   2223323  4444443333211             1  1    13689


Q ss_pred             EEEeCCCchhhcccchhhhcCCCeEEEEEECCCh----hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC--CCH
Q 048059           62 DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM----DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE--VPT  135 (198)
Q Consensus        62 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~  135 (198)
                      .||||||++.|.......+..+|++|+|+|++++    ++.+.+.    .+...  ...|+++++||+|+.....  ...
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHHHHHH
Confidence            9999999999887777778889999999999853    3444333    22222  2347999999999975443  234


Q ss_pred             HHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          136 EEGEQFSQE---NGMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       136 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      +++.++...   .+++++++||++|.|+++++++|...+..
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            566666664   36789999999999999999999886654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=1.2e-22  Score=160.24  Aligned_cols=164  Identities=17%  Similarity=0.113  Sum_probs=116.3

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEE-------------------E---eCCcEEEEEE
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL-------------------S---LSEATVKFDI   63 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~~~~l   63 (198)
                      .....++|+++|++++|||||+++|++.......    +........                   .   .......+.+
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF   79 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc----CccccceeeccccccccceecccccccccccccccccceEEE
Confidence            4456799999999999999999999975422211    100000000                   0   0112367999


Q ss_pred             EeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHH
Q 048059           64 WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQF  141 (198)
Q Consensus        64 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~  141 (198)
                      |||||++.|...+..++..+|++|+|+|++++.++.+...|+..+....  ..|+++++||+|+......  ..++..++
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998776777777777665543  2489999999998643211  11222222


Q ss_pred             HHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          142 SQEN---GMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       142 ~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      ....   +++++++||++|.|+++++++|...+....
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            2222   678999999999999999999988765433

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=7.7e-24  Score=162.88  Aligned_cols=157  Identities=21%  Similarity=0.213  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCcceeEEEEEEEeCCcEEEEEEEeCCCchh----hcccchhhh---cC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQE--PTIGAAFFTQILSLSEATVKFDIWDTAGQER----YHSLAPMYY---RG   82 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~   82 (198)
                      +|+|+|.+|||||||+++|++........  .|...+  ...+.+.+ ...+.+|||||...    +..+...++   ..
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~  236 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER  236 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence            68899999999999999999765332222  222222  22333443 24688999999643    333445554   45


Q ss_pred             CCeEEEEEECCC---hhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccC
Q 048059           83 AAAAVVVYDISN---MDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYIETSAK  155 (198)
Q Consensus        83 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  155 (198)
                      ++++|+|+|+++   +.+++.+..|+..+.....  ...|+++|+||+|+...    .+....++..++  ++++++||+
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~  312 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAV  312 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECC
Confidence            999999999988   7889999999998887642  47899999999998642    244566777766  689999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhC
Q 048059          156 TAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       156 ~~~~i~~~~~~l~~~~~~~~  175 (198)
                      ++.|+++++++|.+.+.+..
T Consensus       313 tg~gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          313 TREGLRELLFEVANQLENTP  332 (342)
T ss_dssp             CSSTTHHHHHHHHHHHTSCC
T ss_pred             CCcCHHHHHHHHHHHHhhCc
Confidence            99999999999999886543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=3.3e-23  Score=165.87  Aligned_cols=153  Identities=17%  Similarity=0.193  Sum_probs=112.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch-hhcc--------cchhh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE-RYHS--------LAPMY   79 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~~   79 (198)
                      .++|+|+|.+|+|||||+|+|++.... ....+..+.+.....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987532 33334334444444555554  468899999987 5432        23456


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (198)
                      +.++|++|+|||++++.+++..+ +++.+     ...|+++|+||+|+...  ...++...+.. .+++++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            78999999999999887776543 22332     35799999999998643  34455544432 457899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 048059          160 INELFYEIAKRLAR  173 (198)
Q Consensus       160 i~~~~~~l~~~~~~  173 (198)
                      +++++++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999997654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=2.1e-22  Score=161.78  Aligned_cols=159  Identities=18%  Similarity=0.128  Sum_probs=110.3

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCC----C---CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQ----F---YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPM   78 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~   78 (198)
                      ..+..++|+++|++++|||||+++|++..    .   ..+..+.+..+.....+.++  ...+.+|||||++.|...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHH
Confidence            44668999999999999999999999765    1   12222222222112222333  367899999999999888888


Q ss_pred             hhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHHHHHHHHHHc----CCeE
Q 048059           79 YYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTEEGEQFSQEN----GMFY  149 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~----~~~~  149 (198)
                      .+..+|++|+|+|+++   +++.+.+.    .+..   .+.|+++++||+|+....  +...++..++....    ++++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            9999999999999987   44433332    2222   246779999999986421  11233445555554    5789


Q ss_pred             EEEccCCCCCHHHHHHHHHHHHHh
Q 048059          150 IETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      +++||++|.|+++++++|...+..
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhcC
Confidence            999999999999999999998763

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=7.7e-23  Score=150.62  Aligned_cols=166  Identities=16%  Similarity=0.193  Sum_probs=107.0

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEeCCcEEEEEEEeCCCc-----------hhh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSLSEATVKFDIWDTAGQ-----------ERY   72 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~~   72 (198)
                      +....++|+|+|++|||||||+++|++........+  +.+...........+  ..+.+|||||.           ..+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            345579999999999999999999999877554444  222333233333333  46789999994           234


Q ss_pred             cccchhhhcCCCeEEEEEECCChhh--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC------HHHHHHHHHH
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDT--FNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP------TEEGEQFSQE  144 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~------~~~~~~~~~~  144 (198)
                      ...+..++.++|++|+|+|+++...  ...+..+...+...  ...|+++|+||+|+.....+.      .+..+.+...
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            4455556678999999999875433  22223333333222  235899999999986544332      2467788888


Q ss_pred             cCCeEEEEccCCC-----CCHHHHHHHHHHHHHhhC
Q 048059          145 NGMFYIETSAKTA-----QNINELFYEIAKRLARVS  175 (198)
Q Consensus       145 ~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~~~  175 (198)
                      .+..++.++...+     .++.++|..+...+.+..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            8888888877754     689999998887776543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=8.9e-23  Score=155.46  Aligned_cols=121  Identities=17%  Similarity=0.214  Sum_probs=99.5

Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC----------ChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCC
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS----------NMDTFNRANKLVQELQRQ-GNQIVVMALAANKS  125 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~  125 (198)
                      +.+.+++||++|++.++..|.+++++++++|||||++          +..++++...|+..+... ...+.|+++++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            4578999999999999999999999999999999665          566777777777777653 33678999999999


Q ss_pred             CCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          126 DLDSQR----------------EVPTEEGEQFSQ----------ENGMFYIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       126 Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      |+..++                ..+.+++.+++.          ..++.++++||+++.||+.+|..+.+.+.+.+-.
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~  322 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK  322 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHH
Confidence            984322                467788888843          4567889999999999999999999999887643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=1.5e-22  Score=161.18  Aligned_cols=152  Identities=20%  Similarity=0.204  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh---------hcccchhhh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER---------YHSLAPMYY   80 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~   80 (198)
                      .+|+|+|.||||||||+|+|++.... ....+..+.+.....+...+  ..+.+|||||.+.         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999987643 22223333333344444444  3578999999753         344567788


Q ss_pred             cCCCeEEEEEECCChhhHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHH-HHHHHHcCC-eEEEEccCC
Q 048059           81 RGAAAAVVVYDISNMDTFNR--ANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEG-EQFSQENGM-FYIETSAKT  156 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~  156 (198)
                      +++|++|+|+|++++.+..+  +..|+.   .   .+.|+++|+||+|+...  . .... .++. .+++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999987544332  233332   2   24689999999997431  1 1222 3333 4566 789999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 048059          157 AQNINELFYEIAKRLARV  174 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (198)
                      |.|++++++++...+.+.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999988754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=7.1e-23  Score=152.59  Aligned_cols=166  Identities=14%  Similarity=0.170  Sum_probs=103.6

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCC-cceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc-------
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPT-IGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA-------   76 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------   76 (198)
                      +....++|+|+|++|||||||+++|++... .....++ .+.+.........  ...+.||||||...+....       
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            345579999999999999999999998763 3333332 2223223333333  3568899999986543322       


Q ss_pred             ----hhhhcCCCeEEEEEECCChhhH-HHHHHHHHHHHHhCCCCceEEEEEe-CCCCCCCCCCCH-------HHHHHHHH
Q 048059           77 ----PMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN-KSDLDSQREVPT-------EEGEQFSQ  143 (198)
Q Consensus        77 ----~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~n-K~Dl~~~~~~~~-------~~~~~~~~  143 (198)
                          ..+++.+|++|+|+|+++.... ..+..++..+.... ...|+++++| |+|+... .+..       +.+..+..
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence                2366889999999999862222 22223333322111 1345555555 9998643 2211       22444555


Q ss_pred             HcCCe---E--EEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          144 ENGMF---Y--IETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       144 ~~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      ..+..   +  +++||+++.|++++|++|.+.+.+..
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            55543   2  78999999999999999999887643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=6.8e-22  Score=153.41  Aligned_cols=165  Identities=17%  Similarity=0.061  Sum_probs=109.9

Q ss_pred             eeE-EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch---------hhcccchhh
Q 048059           10 QAK-LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE---------RYHSLAPMY   79 (198)
Q Consensus        10 ~~~-i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~   79 (198)
                      .++ |+++|++|||||||+++|++........+....+.....+.+++  ..+.+|||+|.-         .+...++ .
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-E  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence            355 99999999999999999998765332222222233345555665  467899999962         2222222 4


Q ss_pred             hcCCCeEEEEEECCChh--hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHc---CCeEEEEc
Q 048059           80 YRGAAAAVVVYDISNMD--TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV-PTEEGEQFSQEN---GMFYIETS  153 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~S  153 (198)
                      +..+|++++|+|++++.  ..+.+..|...+........|+++|+||+|+...... ..+.+..++..+   +.+++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            68899999999998876  5666666776666654467899999999998643210 011233334444   34689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          154 AKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      |+++.|+++++++|.+.+......
T Consensus       335 A~~g~gi~~L~~~I~~~l~~~~~~  358 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQLSLE  358 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHC--
T ss_pred             CCCCcCHHHHHHHHHHHhcccCCC
Confidence            999999999999999887765543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=2.6e-23  Score=165.49  Aligned_cols=155  Identities=17%  Similarity=0.151  Sum_probs=101.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch--------hhcccchhhhc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE--------RYHSLAPMYYR   81 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~   81 (198)
                      ..+|+++|.+|||||||+++|++.... ...++.|.+..............+.+|||||.+        .+...+..+++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            368999999999999999999986643 234455665555555555555678999999985        56677888899


Q ss_pred             CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCH
Q 048059           82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNI  160 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  160 (198)
                      ++|++|+|+|++++.+...  .++..+..  ..+.|+++|+||+|+......    ..++. .+++ .++++||++|.|+
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence            9999999999987665443  22222222  246799999999998643211    11122 3455 7899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 048059          161 NELFYEIAKRLARV  174 (198)
Q Consensus       161 ~~~~~~l~~~~~~~  174 (198)
                      +++++++.+.+.+.
T Consensus       153 ~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          153 GDLLDAVAEHFKNI  166 (436)
T ss_dssp             HHHHHHHHHTGGGC
T ss_pred             HHHHHHHHHhcCcc
Confidence            99999999887643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=4.5e-23  Score=164.40  Aligned_cols=155  Identities=18%  Similarity=0.147  Sum_probs=101.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccch--------hh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAP--------MY   79 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~--------~~   79 (198)
                      ..++|+++|++|+|||||+|+|++.... ....++.+.+.....+.+++  ..+.+|||||...+...++        .+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3589999999999999999999986433 23334333333333444444  4678999999866544333        35


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  159 (198)
                      +.++|++++|+|.+++.+.+. ..|+..+.     ..|+++|+||+|+.......  ....+.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999998766544 44544442     25999999999986544332  111111  356899999999999


Q ss_pred             HHHHHHHHHHHHHhhC
Q 048059          160 INELFYEIAKRLARVS  175 (198)
Q Consensus       160 i~~~~~~l~~~~~~~~  175 (198)
                      +++++++|.+.+....
T Consensus       371 i~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          371 IDSLETAILEIVQTGK  386 (462)
T ss_dssp             HHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhccC
Confidence            9999999999886544

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=4.1e-22  Score=162.99  Aligned_cols=159  Identities=18%  Similarity=0.240  Sum_probs=111.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CC------CCCcceeEEEEEEEe-----CCcEEEEEEEeCCCchh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ--FYD-----QQ------EPTIGAAFFTQILSL-----SEATVKFDIWDTAGQER   71 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~   71 (198)
                      -.||+|+|+.++|||||+++|+...  ...     ..      ....|.+.......+     ++..+.+.||||||+..
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4799999999999999999998621  110     00      011233332222222     45578999999999999


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF---  148 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  148 (198)
                      |...+..++..+|++|+|+|+++..+.+....|.....    .+.|+++++||+|+...+  ..+...++...+++.   
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~  157 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD  157 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998777777777765542    357999999999986543  234456666666764   


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059          149 YIETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ++++||++|.|+++++++|.+.+...
T Consensus       158 vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          158 AVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             CEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             EEEeecccCCCchhHHHHHhhcCCCc
Confidence            89999999999999999999877543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=1.1e-21  Score=154.98  Aligned_cols=162  Identities=17%  Similarity=0.143  Sum_probs=112.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCC--CcceeEEEEEEEe-------------C--C----cEEEE
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQF---YDQQEP--TIGAAFFTQILSL-------------S--E----ATVKF   61 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   61 (198)
                      .+...++|+++|+.++|||||+++|++...   ..+..+  |+...+....+..             .  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            346679999999999999999999996432   222223  4444443333211             0  1    13679


Q ss_pred             EEEeCCCchhhcccchhhhcCCCeEEEEEECCCh----hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC--CCH
Q 048059           62 DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM----DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE--VPT  135 (198)
Q Consensus        62 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~  135 (198)
                      .||||||++.|.......+..+|++|+|+|+++.    ++.+.+..    +...  ...|+++++||+|+.....  ...
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHH
Confidence            9999999999887777778889999999999853    34443332    2222  2247999999999865321  122


Q ss_pred             HHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          136 EEGEQFSQE---NGMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       136 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      +++.++...   .+++++++||++|.|+++++++|...+..
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            344555543   36789999999999999999999886654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=1.5e-22  Score=153.68  Aligned_cols=159  Identities=15%  Similarity=0.141  Sum_probs=107.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch---------hhcccch
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE---------RYHSLAP   77 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~   77 (198)
                      ....+|+|+|++|+|||||+++|++..... ...+..........+  .....++.+|||||..         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~--~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH--TEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE--EETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE--EECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            345689999999999999999999876431 111211111111112  2234578899999986         2344556


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKT  156 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (198)
                      .++..+|++++|+|.++   +.....|+.....  ..+.|+++++||+|+...+....+....+...+++ .++++||++
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            77889999999999976   3223333322222  24679999999999865222223445566666676 799999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 048059          157 AQNINELFYEIAKRLAR  173 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~  173 (198)
                      +.|++++++.+...+.+
T Consensus       159 g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          159 GLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             TTTHHHHHHHHHTTCCB
T ss_pred             CCCHHHHHHHHHHhCCc
Confidence            99999999999876543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.88  E-value=3.2e-22  Score=154.34  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=95.1

Q ss_pred             cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC----------ChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCC
Q 048059           57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS----------NMDTFNRANKLVQELQRQ-GNQIVVMALAANKS  125 (198)
Q Consensus        57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~  125 (198)
                      ..+.+++|||+|++.++..|..++++++++|||||++          +..+++....|+..+... ...+.|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5788999999999999999999999999999999998          778899998888888764 23678999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEEccCCCCCHHHHHHHHH
Q 048059          126 DLDSQRE--V-------------------PTEEGEQFSQE----------------NGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus       126 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |+..++.  +                   +.+++..++..                ..+.++++||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211  1                   24666666443                234578999999999999999999


Q ss_pred             HHHHhhC
Q 048059          169 KRLARVS  175 (198)
Q Consensus       169 ~~~~~~~  175 (198)
                      +.+.+.+
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=1.8e-21  Score=158.92  Aligned_cols=161  Identities=20%  Similarity=0.208  Sum_probs=114.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhC--CCCC-----CCCC------CcceeEE----EEEEEe-CCcEEEEEEEeCCCc
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKG--QFYD-----QQEP------TIGAAFF----TQILSL-SEATVKFDIWDTAGQ   69 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~--~~~~-----~~~~------~~~~~~~----~~~~~~-~~~~~~~~l~D~~g~   69 (198)
                      ....||+++|+.++|||||+++|+..  ....     ....      ..|.+..    ...+.. ++..+.+.||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            34579999999999999999999852  1110     0000      1111211    111221 455688999999999


Q ss_pred             hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 048059           70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM--  147 (198)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--  147 (198)
                      ..|...+..++..+|++|+|+|+++..+.+....|.....    .+.|+++++||+|+....  ..+...++...+++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999889999999999999999998877777777765542    457899999999986543  23344566666676  


Q ss_pred             -eEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059          148 -FYIETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       148 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                       .++++||++|.|+++++++|++.+...
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence             489999999999999999999877543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.88  E-value=7.8e-22  Score=156.88  Aligned_cols=155  Identities=17%  Similarity=0.180  Sum_probs=104.6

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCCcceeEEEEEEEe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFY-------------------------------DQQEPTIGAAFFTQILSL   54 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   54 (198)
                      +....++|+++|++++|||||+++|++....                               .+..  .|.+.......+
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~--~GiTid~~~~~~   90 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD--KGKTVEVGRAYF   90 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhh--cCceEEEeEEEE
Confidence            3456799999999999999999999653110                               0111  233333344444


Q ss_pred             CCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh---H---HHHHHHHHHHHHhCCCCce-EEEEEeCCCC
Q 048059           55 SEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT---F---NRANKLVQELQRQGNQIVV-MALAANKSDL  127 (198)
Q Consensus        55 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl  127 (198)
                      ......+.||||||+++|......++..+|++|+|+|+++...   +   .+....+..+..   ...| +++++||+|+
T Consensus        91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD  167 (439)
T ss_pred             ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence            4455689999999999999999999999999999999987532   1   122222222222   2344 8999999998


Q ss_pred             CCCC------CCCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHHH
Q 048059          128 DSQR------EVPTEEGEQFSQENG------MFYIETSAKTAQNINELFY  165 (198)
Q Consensus       128 ~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  165 (198)
                      ....      ....++...+.+.++      ++++++||++|.|+.++++
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            5321      111233444554444      5799999999999999765

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=3.5e-22  Score=160.78  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=99.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCC--CC---------------------------CCCCCcceeEEEEEEEeCCcE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQF--YD---------------------------QQEPTIGAAFFTQILSLSEAT   58 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   58 (198)
                      ...+||+++|.+++|||||+++|++...  ..                           ......|.+.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            4569999999999999999999986411  00                           000111333333333344455


Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHH------HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFN------RANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      ..+.||||||+++|......++.++|++|+|+|++++.+..      +....+..+...  ...|+++++||+|+...++
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence            67899999999999999999999999999999999865432      222222222222  2347999999999875433


Q ss_pred             CCHHHHH----HHHHHc-----CCeEEEEccCCCCCHHH
Q 048059          133 VPTEEGE----QFSQEN-----GMFYIETSAKTAQNINE  162 (198)
Q Consensus       133 ~~~~~~~----~~~~~~-----~~~~~~~Sa~~~~~i~~  162 (198)
                      ...++..    .+....     +++++++||++|.|+++
T Consensus       189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            3233333    333332     46899999999999874

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.6e-23  Score=161.49  Aligned_cols=165  Identities=16%  Similarity=0.221  Sum_probs=94.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CC--------CCCcceeEEEEEEEeCCcEEEEEEEeCCCc-------hh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQ--------EPTIGAAFFTQILSLSEATVKFDIWDTAGQ-------ER   71 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~   71 (198)
                      ...++|+|+|++|+|||||+++|++..... .+        .++.+.......+...+..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            346899999999999999999987653322 22        134343333333444555678999999998       66


Q ss_pred             hcccch-------hhhcCCCeE-----------EEEEECCC-hhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           72 YHSLAP-------MYYRGAAAA-----------VVVYDISN-MDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        72 ~~~~~~-------~~~~~~d~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      +..++.       .++.+++++           +++|++++ ..++..+. .|+..+    ....|+++|+||+|+...+
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            666665       566544332           35555543 34454443 344333    3568999999999987544


Q ss_pred             CCCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059          132 EVPT--EEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      ++..  +.+..++..++++++++||+++.+ ++.|.++...+.+..+.
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            4333  456677777899999999999999 99999999998877664

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.87  E-value=7.4e-23  Score=153.62  Aligned_cols=162  Identities=17%  Similarity=0.181  Sum_probs=93.1

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-C-------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-------
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-Q-------EPTIGAAFFTQILSLSEATVKFDIWDTAGQER-------   71 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------   71 (198)
                      ....++|+|+|.+|+|||||+|+|++...... +       .++.+.+.....+..++..+.+.+|||||...       
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            44579999999999999999999887554332 2       45556665555555556667899999999732       


Q ss_pred             hcccc-------hhhhc-------------CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           72 YHSLA-------PMYYR-------------GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        72 ~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      +..+.       ..++.             .+|+++++++.+.....+.-..++..+..    ..|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence            22222       33333             37789999876542211222334444432    68999999999975322


Q ss_pred             CC--CHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          132 EV--PTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      +.  ..+.+.+.....+++++++||++++|+++++++|.+.+.
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            21  112344455567899999999999999999999887543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.4e-22  Score=143.01  Aligned_cols=117  Identities=18%  Similarity=0.240  Sum_probs=89.1

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcC-
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ---QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG-   82 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~-   82 (198)
                      ....++|+|+|++|||||||+++|++..+...   ..++.+.         ......+.+|||||++.+...+..++.+ 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            34568999999999999999999998765431   1222211         1134568899999999988888888876 


Q ss_pred             ---CCeEEEEEECC-ChhhHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCCCCCC
Q 048059           83 ---AAAAVVVYDIS-NMDTFNRANKLVQELQRQ----GNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                         +|++|+|||++ +.++++.+..|+..+...    .....|+++|+||+|+.....
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence               89999999999 899999988887776553    335789999999999876554

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=3e-21  Score=153.73  Aligned_cols=161  Identities=20%  Similarity=0.155  Sum_probs=105.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc-----------
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA-----------   76 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------   76 (198)
                      ..++|+|+|++|||||||+++|++.... ....+..+.+.....+.+++.  .+.+|||+|........           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4589999999999999999999986532 122222222222334445554  57899999975432211           


Q ss_pred             -hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH-HHHH----HcCCeEE
Q 048059           77 -PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE-QFSQ----ENGMFYI  150 (198)
Q Consensus        77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~  150 (198)
                       ..++..+|++++++|+++..+.+.. .+...+..   ...|+++++||+|+.+.+....++.. .+..    ..+++++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence             2356789999999999876655442 22233322   45799999999998765443333332 2222    2357899


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          151 ETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      ++||++|.|++++|+.+.+.+....
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhhc
Confidence            9999999999999999998776654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.87  E-value=1.8e-21  Score=151.92  Aligned_cols=118  Identities=19%  Similarity=0.234  Sum_probs=96.8

Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCC----------hhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN----------MDTFNRANKLVQELQRQ-GNQIVVMALAANKSD  126 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D  126 (198)
                      .+.+++|||+|++.++..|..++++++++|||||+++          ..+++....|+..+... ...+.|++|++||+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            3789999999999999999999999999999999998          88999999999988775 346789999999999


Q ss_pred             CCCCCC---C---------------------------CHHHHHHHHH-----H--------cCCeEEEEccCCCCCHHHH
Q 048059          127 LDSQRE---V---------------------------PTEEGEQFSQ-----E--------NGMFYIETSAKTAQNINEL  163 (198)
Q Consensus       127 l~~~~~---~---------------------------~~~~~~~~~~-----~--------~~~~~~~~Sa~~~~~i~~~  163 (198)
                      +...+.   +                           +.+++..|+.     .        .++.++++||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            843211   1                           1355666532     1        2567889999999999999


Q ss_pred             HHHHHHHHHhhC
Q 048059          164 FYEIAKRLARVS  175 (198)
Q Consensus       164 ~~~l~~~~~~~~  175 (198)
                      |.++.+.+.+.+
T Consensus       376 F~~v~~~I~~~~  387 (402)
T 1azs_C          376 FNDCRDIIQRMH  387 (402)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988877654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.86  E-value=7.2e-22  Score=150.99  Aligned_cols=118  Identities=17%  Similarity=0.224  Sum_probs=96.3

Q ss_pred             CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC----------ChhhHHHHHHHHHHHHHh-CCCCceEEEEEeC
Q 048059           56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS----------NMDTFNRANKLVQELQRQ-GNQIVVMALAANK  124 (198)
Q Consensus        56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK  124 (198)
                      .+.+.+++||++|++.++..|..++++++++|||||++          +..++++...|+..+... ...+.|+++++||
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK  237 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK  237 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence            34578899999999999999999999999999999998          677888888888777664 3367899999999


Q ss_pred             CCCCCC---------------CCCCHHHHHHHHHH-c--------------------------CCeEEEEccCCCCCHHH
Q 048059          125 SDLDSQ---------------REVPTEEGEQFSQE-N--------------------------GMFYIETSAKTAQNINE  162 (198)
Q Consensus       125 ~Dl~~~---------------~~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~i~~  162 (198)
                      +|+..+               ...+.+++.+++.. .                          .+.++++||+++.||+.
T Consensus       238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            997321               11246666555542 2                          36789999999999999


Q ss_pred             HHHHHHHHHHh
Q 048059          163 LFYEIAKRLAR  173 (198)
Q Consensus       163 ~~~~l~~~~~~  173 (198)
                      +|..+.+.+++
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998887

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=1.2e-21  Score=155.69  Aligned_cols=155  Identities=21%  Similarity=0.220  Sum_probs=104.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC----------CCCCc-------------------ceeEEEEEEEeC
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQF--YDQ----------QEPTI-------------------GAAFFTQILSLS   55 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~--~~~----------~~~~~-------------------~~~~~~~~~~~~   55 (198)
                      ....++|+++|++++|||||+++|++...  ...          ...+.                   |.+.......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            34569999999999999999999986431  000          00111                   111111222233


Q ss_pred             CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--
Q 048059           56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--  133 (198)
Q Consensus        56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--  133 (198)
                      .....+.||||||++.|...+..++..+|++|+|+|++++.. .+...++..+...  ...|+++++||+|+......  
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHH
Confidence            345678999999999998888889999999999999987542 3333444444332  22379999999998652211  


Q ss_pred             --CHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHH
Q 048059          134 --PTEEGEQFSQENG-----MFYIETSAKTAQNINELF  164 (198)
Q Consensus       134 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  164 (198)
                        ..++...+++.++     ++++++||++|.|+++++
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence              2344556666677     689999999999998853

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=2.2e-23  Score=168.23  Aligned_cols=159  Identities=18%  Similarity=0.177  Sum_probs=110.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      ..+|+++|++++|||||+++|.+..+.....++++.++....+... ....+.||||||++.|..++..++..+|++|+|
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            5789999999999999999999765544444444333322222221 223688999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHH---HHHc--CCeEEEEccCCCCCHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQF---SQEN--GMFYIETSAKTAQNINEL  163 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~~  163 (198)
                      +|+++....+..+.| ..+.   ..+.|+++++||+|+..... ....+...+   +..+  .++++++||++|.|++++
T Consensus        83 VDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P           83 VAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             CBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             EECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence            999886544333322 2222   24579999999999864321 111222221   1111  357999999999999999


Q ss_pred             HHHHHHHHHh
Q 048059          164 FYEIAKRLAR  173 (198)
Q Consensus       164 ~~~l~~~~~~  173 (198)
                      +++|...+..
T Consensus       159 le~I~~l~~~  168 (537)
T 3izy_P          159 AEATIALAEM  168 (537)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHhhhc
Confidence            9999887653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=5.6e-23  Score=163.46  Aligned_cols=157  Identities=17%  Similarity=0.230  Sum_probs=104.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCC---------------------------CCCcceeEEEEEEEeCCcE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKG--QFYDQQ---------------------------EPTIGAAFFTQILSLSEAT   58 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   58 (198)
                      ...+||+++|++++|||||+++|++.  .+....                           ....+.+.......+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45699999999999999999999864  221100                           0011122222222344445


Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhC-----CCCceEEEEEeCCCCCCCC--
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG-----NQIVVMALAANKSDLDSQR--  131 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~--  131 (198)
                      ..+.||||||+++|...+..++..+|++|+|+|+++ .+|+.+..|......+.     ....|+++++||+|+....  
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~  162 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  162 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence            678999999999999888899999999999999988 67765433322222110     1224688999999986521  


Q ss_pred             ----CCCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 048059          132 ----EVPTEEGEQFSQENG-----MFYIETSAKTAQNINELFY  165 (198)
Q Consensus       132 ----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  165 (198)
                          ....+++..++...+     ++++++||++|.|+.+++.
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                112345666666665     6899999999999986654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=2.4e-22  Score=160.73  Aligned_cols=158  Identities=18%  Similarity=0.156  Sum_probs=102.9

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC--------chhhcccch
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG--------QERYHSLAP   77 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~   77 (198)
                      ..+...+|+|+|.+|||||||+++|++.... ....+.|.+..............+.+|||||        ++.+...+.
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            4455689999999999999999999986643 2334556666566666666667899999999        677778888


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKT  156 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (198)
                      .+++++|++|+|+|..+..+.  ...|+..+...  .+.|+++|+||+|+.....    ...++. .++. .++++||++
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~  168 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTH  168 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred             hhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeeccc
Confidence            899999999999998764322  22233333222  5679999999999854321    111111 2233 467999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 048059          157 AQNINELFYEIAKRLAR  173 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~  173 (198)
                      |.|+.++++++.+.+.+
T Consensus       169 g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          169 GLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             CTTHHHHHHHHHTTGGG
T ss_pred             ccchHHHHHHHHhhccc
Confidence            99999999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.86  E-value=8.5e-22  Score=159.40  Aligned_cols=118  Identities=14%  Similarity=0.144  Sum_probs=82.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-----------------CCC---CCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-----------------DQQ---EPTIGAAFFTQILSLSEATVKFDIWDTA   67 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-----------------~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~   67 (198)
                      ....+|+|+|++|+|||||+++|+.....                 ...   ....|.+.......+....+.+.|||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            34689999999999999999999621100                 000   0001112222223333345778999999


Q ss_pred             CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      |+..+...+..+++.+|++|+|+|+++..+.+....|. .+..   .+.|+++++||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence            99999999999999999999999999876666555443 2322   4579999999999854

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.85  E-value=1.2e-20  Score=154.39  Aligned_cols=161  Identities=24%  Similarity=0.178  Sum_probs=108.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----CCCCcceeEEEEEE------------EeCCcEEEEEEEeCCCchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ----QEPTIGAAFFTQIL------------SLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~   71 (198)
                      ...++|+|+|++++|||||+++|++......    ..++++..+.....            .+......+.||||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            3467999999999999999999987543221    11233333221110            0001122588999999999


Q ss_pred             hcccchhhhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC-------------H
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP-------------T  135 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-------------~  135 (198)
                      |..++..++..+|++|+|||+++   +++++.+..    +..   .+.|+++++||+|+.......             .
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999998   566554432    222   457999999999986432110             0


Q ss_pred             ---H-------HHHHHHHHc---------------CCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          136 ---E-------EGEQFSQEN---------------GMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       136 ---~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                         +       +........               .++++++||++|.|+++++++|...+....
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence               0       111111111               237999999999999999999998776443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=1.5e-21  Score=153.53  Aligned_cols=160  Identities=18%  Similarity=0.140  Sum_probs=109.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQ-------FYDQ-------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS   74 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   74 (198)
                      ..+||+++|++++|||||+++|++..       +...       .....|.+.......+......+.||||||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            36899999999999999999998731       0000       001123333333344444556788999999999988


Q ss_pred             cchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCC---CCHHHHHHHHHHcC----
Q 048059           75 LAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQRE---VPTEEGEQFSQENG----  146 (198)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~----  146 (198)
                      ....++..+|++|+|+|+++....+..+. +..+..   .+.| +++++||+|+.....   ...++..++++.++    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            88888999999999999988543333333 333333   2456 789999999864211   11235566666665    


Q ss_pred             -CeEEEEccCCCCC----------HHHHHHHHHHHHH
Q 048059          147 -MFYIETSAKTAQN----------INELFYEIAKRLA  172 (198)
Q Consensus       147 -~~~~~~Sa~~~~~----------i~~~~~~l~~~~~  172 (198)
                       ++++++||++|.|          +.++++.|...+.
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence             5899999999764          7888888776554

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=4.8e-22  Score=156.83  Aligned_cols=150  Identities=16%  Similarity=0.122  Sum_probs=103.2

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--CC-----CCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKG--------QFYDQ--QE-----PTIGAAFFTQILSLSEATVKFDIWDTAGQE   70 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~--------~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   70 (198)
                      .....++|+++|++++|||||+++|++.        .+...  ..     .+.|.+.......+......+.||||||++
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            3456799999999999999999999873        11100  00     012333333344444455678999999999


Q ss_pred             hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC
Q 048059           71 RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQENG  146 (198)
Q Consensus        71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~  146 (198)
                      +|......++..+|++|+|+|+++... .+...|+..+...   +.| +++++||+|+......   ..++...+...++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            998888889999999999999987643 3445555555442   456 8899999998642111   1234555666655


Q ss_pred             -----CeEEEEccCCCCC
Q 048059          147 -----MFYIETSAKTAQN  159 (198)
Q Consensus       147 -----~~~~~~Sa~~~~~  159 (198)
                           ++++++||++|.|
T Consensus       163 ~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             SCTTTSCEEECCHHHHHH
T ss_pred             ccccCCCEEEccHHHhhh
Confidence                 6899999999987

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=2.3e-21  Score=150.85  Aligned_cols=147  Identities=11%  Similarity=0.087  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      +|+++|++++|||||+++|+      ....|++..    ...+......+.+|||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~----~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDIT----MYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSSE----EEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEee----EEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998      122222222    22233344568999999999988777788899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhCCCCceE-EEEEe-CCCCCCCCCCC--HHHHHHHHHHc---CCeEEE--EccCC---CCC
Q 048059           92 ISNMDTFNRANKLVQELQRQGNQIVVM-ALAAN-KSDLDSQREVP--TEEGEQFSQEN---GMFYIE--TSAKT---AQN  159 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~--~Sa~~---~~~  159 (198)
                       +. ..+.+...++..+...   ..|. ++++| |+|+ ......  .+++.++....   .+++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             43 4455566666555443   2455 88888 9998 422111  13445555443   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHhh
Q 048059          160 INELFYEIAKRLARV  174 (198)
Q Consensus       160 i~~~~~~l~~~~~~~  174 (198)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999877643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3e-21  Score=158.74  Aligned_cols=154  Identities=18%  Similarity=0.184  Sum_probs=100.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------------------------CCcceeEEEEEEEeCCcE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQE-----------------------------PTIGAAFFTQILSLSEAT   58 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   58 (198)
                      ...+||+++|++++|||||+++|++........                             ...|.+.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457999999999999999999998653211100                             001222222222233345


Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh---H---HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT---F---NRANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      ..+.||||||++.|...+..++..+|++|+|+|++++..   +   .+....+..+..  ....|++|++||+|+...+.
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEECTTTTTTCH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEecccccchhH
Confidence            678999999999999988999999999999999987421   0   122222222222  12346999999999865332


Q ss_pred             CC----HHHHHHHHHHc-----CCeEEEEccCCCCCHHHH
Q 048059          133 VP----TEEGEQFSQEN-----GMFYIETSAKTAQNINEL  163 (198)
Q Consensus       133 ~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~  163 (198)
                      ..    .++...+....     +++++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            22    22333344433     468999999999999876

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=2.5e-21  Score=155.05  Aligned_cols=157  Identities=18%  Similarity=0.214  Sum_probs=88.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC----------------------CC-----CCcceeEEEEEEEeCCcE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK--GQFYDQ----------------------QE-----PTIGAAFFTQILSLSEAT   58 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~   58 (198)
                      ...++|+++|++++|||||+++|+.  +.+...                      ..     ...|.+.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            4579999999999999999999974  211100                      00     001111111111222234


Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh---hHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCC---
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD---TFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQR---  131 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~---  131 (198)
                      ..+.||||||++.|.......+..+|++|+|+|+++..   +|+....|.+.+......+.| ++|++||+|+....   
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~  200 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  200 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence            67899999999999988888999999999999998762   222111122222111113455 99999999985321   


Q ss_pred             ---CCCHHHHHHHHHHc-------CCeEEEEccCCCCCHHHHH
Q 048059          132 ---EVPTEEGEQFSQEN-------GMFYIETSAKTAQNINELF  164 (198)
Q Consensus       132 ---~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~  164 (198)
                         ....++...++...       +++++++||++|.|+.+++
T Consensus       201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence               11123456666555       4679999999999998766

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.83  E-value=4.9e-22  Score=158.80  Aligned_cols=150  Identities=16%  Similarity=0.170  Sum_probs=101.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCC-------------------------------CCCCCcceeEEEEEEE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKG--QFYD-------------------------------QQEPTIGAAFFTQILS   53 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~-------------------------------~~~~~~~~~~~~~~~~   53 (198)
                      ....++|+++|++++|||||+++|++.  .+..                               ....|+...    ...
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~----~~~   79 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIA----LWK   79 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCS----CEE
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEE----EEE
Confidence            345799999999999999999999864  1111                               011222222    122


Q ss_pred             eCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh---hHH---HHHHHHHHHHHhCCCCc-eEEEEEeCCC
Q 048059           54 LSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD---TFN---RANKLVQELQRQGNQIV-VMALAANKSD  126 (198)
Q Consensus        54 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~-p~iiv~nK~D  126 (198)
                      +......+.||||||++.|......++..+|++|+|+|+++..   +|+   +...++..+..   ... ++++++||+|
T Consensus        80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~D  156 (458)
T 1f60_A           80 FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMD  156 (458)
T ss_dssp             EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGG
T ss_pred             EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccc
Confidence            3344567999999999999988888999999999999998753   221   23333333322   233 5899999999


Q ss_pred             CCCCCC----CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHH
Q 048059          127 LDSQRE----VPTEEGEQFSQENG-----MFYIETSAKTAQNINEL  163 (198)
Q Consensus       127 l~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  163 (198)
                      +.....    ...++...++..++     ++++++||++|.|+.++
T Consensus       157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            863211    12234555555555     68999999999998754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.83  E-value=1.6e-20  Score=135.34  Aligned_cols=157  Identities=11%  Similarity=0.088  Sum_probs=99.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----------hcccch
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----------YHSLAP   77 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~   77 (198)
                      ....+|+++|++|||||||+++|++..+.....++.|.+.....+.+.+   .+.+|||||...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            3467999999999999999999998664444455656554433333333   467999999732          222233


Q ss_pred             hhh---cCCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHHHHHHHHHHcC--Ce
Q 048059           78 MYY---RGAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTEEGEQFSQENG--MF  148 (198)
Q Consensus        78 ~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~  148 (198)
                      .++   ..++++++++|++++.+..  .+..|+.   .   ...|+++++||+|+....  +...+.+..++...+  +.
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            344   4689999999998765543  2233332   1   357899999999975421  111344555555554  57


Q ss_pred             EEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          149 YIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ++++||+++.|+++++++|.+.+.+
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhh
Confidence            8899999999999999999887644

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.82  E-value=1.1e-21  Score=157.09  Aligned_cols=152  Identities=20%  Similarity=0.195  Sum_probs=103.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ...+|+++|++++|||||+++|.+..+.....+.+..+.....+..  ....+.||||||++.|..++...+..+|++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~--~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET--ENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT--TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE--CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            4578999999999999999999875544332222222211111222  23467899999999999999999999999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHH--HHHHHHHHc--CCeEEEEccCCCCC
Q 048059           89 VYDISNM---DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTE--EGEQFSQEN--GMFYIETSAKTAQN  159 (198)
Q Consensus        89 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~--~~~~~~~~~--~~~~~~~Sa~~~~~  159 (198)
                      |+|+++.   ++.+.+    ..+..   .+.|+++++||+|+....  .+..+  +...++..+  .++++++||++|.|
T Consensus        81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence            9999873   333332    22222   457899999999986421  11100  000111222  36899999999999


Q ss_pred             HHHHHHHHHH
Q 048059          160 INELFYEIAK  169 (198)
Q Consensus       160 i~~~~~~l~~  169 (198)
                      ++++|++|..
T Consensus       154 I~eLle~I~~  163 (501)
T 1zo1_I          154 IDELLDAILL  163 (501)
T ss_dssp             CTTHHHHTTT
T ss_pred             cchhhhhhhh
Confidence            9999999874

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=4.8e-21  Score=145.32  Aligned_cols=161  Identities=16%  Similarity=0.184  Sum_probs=101.9

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC------CCCCc-----------------c---eeEE-------------
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ------QEPTI-----------------G---AAFF-------------   48 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~------~~~~~-----------------~---~~~~-------------   48 (198)
                      ...++|+|+|.+|||||||+++|++..+...      ..|+.                 |   .+..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            4468999999999999999999998776321      11210                 0   0000             


Q ss_pred             ----------EEEEE-eCCcEEEEEEEeCCCch-------------hhcccchhhhcCCCeEE-EEEECCChhhHHHHHH
Q 048059           49 ----------TQILS-LSEATVKFDIWDTAGQE-------------RYHSLAPMYYRGAAAAV-VVYDISNMDTFNRANK  103 (198)
Q Consensus        49 ----------~~~~~-~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~  103 (198)
                                ...+. .......+.||||||..             .+..++..++..++.+| +|+|+++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                      00000 01113578999999963             34556677888888776 7999977544433333


Q ss_pred             HHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH--cC-CeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          104 LVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE--NG-MFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       104 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ++..+   .....|+++|+||+|+........+........  .+ .+++++||++|.|+++++++|....
T Consensus       184 ~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          184 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            44433   234679999999999875544323322211001  12 3678899999999999999988743

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=1.9e-20  Score=160.38  Aligned_cols=162  Identities=16%  Similarity=0.109  Sum_probs=108.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ-------FYD-------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      ....++|+++|++++|||||+++|++..       +..       ....+.|.++....+.+......+.||||||++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4557999999999999999999998731       000       01122333333233344445567899999999999


Q ss_pred             cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 048059           73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQENG--  146 (198)
Q Consensus        73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~--  146 (198)
                      ......++..+|++|+|+|+++... .+...++..+...   +.| ++|++||+|+......   ..+++..+....+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            8888888999999999999987543 2333444444432   356 7899999998642211   1245566666655  


Q ss_pred             ---CeEEEEccCCC--------CCHHHHHHHHHHHHH
Q 048059          147 ---MFYIETSAKTA--------QNINELFYEIAKRLA  172 (198)
Q Consensus       147 ---~~~~~~Sa~~~--------~~i~~~~~~l~~~~~  172 (198)
                         ++++++||++|        .|+.++++.|...+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence               68999999999        357778877766543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.81  E-value=6.2e-19  Score=131.44  Aligned_cols=124  Identities=14%  Similarity=0.134  Sum_probs=84.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhc-----
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYR-----   81 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-----   81 (198)
                      ...++|+++|.+|+|||||+++|++..... ...+..........+..  ....+.||||||+..+....+.+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            457999999999999999999999876422 11122122222223333  3457899999999877666555543     


Q ss_pred             ----CCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCC--ceEEEEEeCCCCCCCCCCC
Q 048059           82 ----GAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQI--VVMALAANKSDLDSQREVP  134 (198)
Q Consensus        82 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~~~~  134 (198)
                          ++|++++|++++... +... ..|+..+.......  .|+++|+||+|+...+...
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  170 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS  170 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence                789999999987654 4333 46777776653333  4899999999986444433

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.80  E-value=1.3e-20  Score=143.07  Aligned_cols=165  Identities=15%  Similarity=0.165  Sum_probs=88.3

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhC-CCCCCCC--------CCcceeEEEEEEEeCCcEEEEEEEeCCCc-------h
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKG-QFYDQQE--------PTIGAAFFTQILSLSEATVKFDIWDTAGQ-------E   70 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~   70 (198)
                      ....++|+|+|++|+|||||+++|.+. .+.....        ++.+...........+....+++||++|.       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            345799999999999999999998875 3332221        11111111222222344567899999998       4


Q ss_pred             hhcccch-------hhhcC-------------CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059           71 RYHSLAP-------MYYRG-------------AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ  130 (198)
Q Consensus        71 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (198)
                      .+..+..       .++.+             +++++|+.+.+. .+++.+.  .+.+... ....++++|+||.|+...
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCH
Confidence            4444443       44432             233444444322 2233332  1223333 245789999999998654


Q ss_pred             CCC--CHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          131 REV--PTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       131 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      +++  ..+++.+++..++++++++||+++ |++++|.++.+.+.+..+
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            332  235778888889999999999999 999999999999876654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=7.3e-19  Score=146.12  Aligned_cols=117  Identities=15%  Similarity=0.100  Sum_probs=82.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------CcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP----------------TIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      ....+|+|+|+.|+|||||+++|++.........                ..+.++......+....+.+.+|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            3468999999999999999999985322110000                012233333334444567899999999999


Q ss_pred             hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      +...+..+++.+|++++|+|+++...... ..++..+..   .+.|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            98889999999999999999876544332 344444433   357899999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.79  E-value=1.4e-18  Score=136.58  Aligned_cols=161  Identities=17%  Similarity=0.148  Sum_probs=109.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----hcccchhh---hcCCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----YHSLAPMY---YRGAA   84 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~d   84 (198)
                      .|+|+|++|||||||+++|++........+..........+...+ ...+.+||++|...    +..+...+   +..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999987643211111111111122233332 24578999999732    22232222   45799


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      .+++++|++ ...+.++..|...+.....  ...|.++++||.|+...  ...+.........+++++.+||+++.|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999997 5567777777666655431  24688899999998653  223444455555678999999999999999


Q ss_pred             HHHHHHHHHHhhCC
Q 048059          163 LFYEIAKRLARVSP  176 (198)
Q Consensus       163 ~~~~l~~~~~~~~~  176 (198)
                      ++++|.+.+.+...
T Consensus       315 L~~~i~~~l~~~~~  328 (416)
T 1udx_A          315 LKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999887654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.79  E-value=6.3e-19  Score=147.02  Aligned_cols=120  Identities=18%  Similarity=0.120  Sum_probs=83.1

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhC--CCC------CC--CC------CCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKG--QFY------DQ--QE------PTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~--~~~------~~--~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ......+|+|+|++|+|||||+++|+..  ...      ..  ..      ...+.+.......+....+.+.||||||+
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~   87 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH   87 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence            4456799999999999999999999842  110      00  00      01111111112222333577899999999


Q ss_pred             hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      ..+...+..+++.+|++|+|+|+++..+.+....|.. +..   .+.|+++++||+|+..
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9999899999999999999999998777766665553 332   3579999999999853

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.79  E-value=4.2e-19  Score=137.46  Aligned_cols=133  Identities=16%  Similarity=0.195  Sum_probs=98.7

Q ss_pred             CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCC----------hhhHHHHHHHHHHHH
Q 048059           40 EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN----------MDTFNRANKLVQELQ  109 (198)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~  109 (198)
                      .+|.|...  ..+.+.  .+.+.+|||+|++.++..|..++++++++|||||+++          ..+++....|+..+.
T Consensus       186 ~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~  261 (362)
T 1zcb_A          186 RPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV  261 (362)
T ss_dssp             CCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH
T ss_pred             CCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHh
Confidence            35556543  333333  4789999999999999999999999999999999998          678988888888877


Q ss_pred             Hh-CCCCceEEEEEeCCCCCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEEccCCCCCHH
Q 048059          110 RQ-GNQIVVMALAANKSDLDSQR----------------EVPTEEGEQFSQ-----------ENGMFYIETSAKTAQNIN  161 (198)
Q Consensus       110 ~~-~~~~~p~iiv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~  161 (198)
                      .. ...+.|+++++||+|+..++                .++.+++..++.           ..++.++++||+++.||+
T Consensus       262 ~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~  341 (362)
T 1zcb_A          262 NNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIR  341 (362)
T ss_dssp             TCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHH
T ss_pred             cchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHH
Confidence            64 34678999999999985221                256778877762           346789999999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 048059          162 ELFYEIAKRLARVSP  176 (198)
Q Consensus       162 ~~~~~l~~~~~~~~~  176 (198)
                      ++|+++.+.+.+.+-
T Consensus       342 ~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          342 LVFRDVKDTILHDNL  356 (362)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998876543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.79  E-value=1.4e-19  Score=140.81  Aligned_cols=108  Identities=15%  Similarity=0.090  Sum_probs=77.3

Q ss_pred             EEEEEEeCCCchhh-------------cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 048059           59 VKFDIWDTAGQERY-------------HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS  125 (198)
Q Consensus        59 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  125 (198)
                      ..+++|||||...+             ..+...++.++|++|++++.++.....  ..|+..+........|+++|+||+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~  213 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI  213 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence            35789999998765             556778889999999999875433221  234444444444567899999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059          126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus       126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |+........+....+...++.+|++++++.+.++++.+..+.
T Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            9876555555555555556778899999999888877665543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.78  E-value=3.5e-20  Score=151.99  Aligned_cols=152  Identities=20%  Similarity=0.201  Sum_probs=81.3

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC---------------------------CCCCcceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQF--YDQ---------------------------QEPTIGAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~   57 (198)
                      ....++|+++|++++|||||+++|++...  ...                           .....|.+.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            34578999999999999999999974210  000                           0001123333333334444


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh---hH---HHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD---TF---NRANKLVQELQRQGNQIVV-MALAANKSDLDSQ  130 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~  130 (198)
                      ...+.||||||++.|.......+..+|++|+|+|++++.   .+   .+....+..+..   ...| +++++||+|+...
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~  330 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence            577899999999999998888999999999999997532   11   111122222222   2334 8999999998642


Q ss_pred             CCC----CHHHHHHHH-HHcCC-----eEEEEccCCCCCHH
Q 048059          131 REV----PTEEGEQFS-QENGM-----FYIETSAKTAQNIN  161 (198)
Q Consensus       131 ~~~----~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  161 (198)
                      ...    ..++...+. ...++     +++++||++|.|+.
T Consensus       331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            211    122333444 33444     79999999999998

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.78  E-value=8e-20  Score=138.73  Aligned_cols=134  Identities=16%  Similarity=0.124  Sum_probs=107.9

Q ss_pred             HHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh-hHHHHH
Q 048059           25 SLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD-TFNRAN  102 (198)
Q Consensus        25 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  102 (198)
                      +|+.++..+.+. ..+.||+|..+. ..+..++   .+.+||+  +++++.+++.+++++|++|+|||++++. +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577778878887 778899996544 3222222   6889999  8999999999999999999999999987 788889


Q ss_pred             HHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHHHHHH
Q 048059          103 KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus       103 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      .|+..+..   .+.|+++|+||+|+...+.+  ++..+++..++  ++++++||++|.|++++|.++..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99887755   46799999999998654332  45677777777  89999999999999999988643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=1.8e-18  Score=129.41  Aligned_cols=121  Identities=14%  Similarity=0.150  Sum_probs=81.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchh-------h--
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPM-------Y--   79 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-------~--   79 (198)
                      ..++|+++|.+|+|||||+++|++..+... ....+.+.......+......+.+|||||...+......       +  
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            479999999999999999999998764321 122222322333334444567999999998765433221       1  


Q ss_pred             hcCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCC--ceEEEEEeCCCCCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQI--VVMALAANKSDLDSQR  131 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~  131 (198)
                      ...+|++++|+|++.. ++... ..|+..+.......  .|+++|+||+|+....
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            2479999999998653 34333 46777776553333  6999999999986544

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.77  E-value=2.2e-18  Score=143.82  Aligned_cols=162  Identities=16%  Similarity=0.172  Sum_probs=106.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEE-------EEEEEe--------------------------
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFF-------TQILSL--------------------------   54 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~-------~~~~~~--------------------------   54 (198)
                      ..++|+|+|.+|+|||||+|+|++..... ...++......       .....+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            46899999999999999999999876432 22232210000       000100                          


Q ss_pred             --------------------CCcE--EEEEEEeCCCchh---hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHH
Q 048059           55 --------------------SEAT--VKFDIWDTAGQER---YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQ  109 (198)
Q Consensus        55 --------------------~~~~--~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  109 (198)
                                          ....  ..+.||||||...   ....+..++.++|++|+|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                0000  2588999999754   33456678899999999999998877777666654443


Q ss_pred             HhCCCCceEEEEEeCCCCCCCCCCCHH----------HHHH-----HHHH--------cCCeEEEEccC-----------
Q 048059          110 RQGNQIVVMALAANKSDLDSQREVPTE----------EGEQ-----FSQE--------NGMFYIETSAK-----------  155 (198)
Q Consensus       110 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~-----------  155 (198)
                      .   ...|+++|+||+|+.....++.+          ....     +...        ...+++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   35689999999998543211111          1111     1111        12469999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHh
Q 048059          156 ---TAQNINELFYEIAKRLAR  173 (198)
Q Consensus       156 ---~~~~i~~~~~~l~~~~~~  173 (198)
                         ++.|++++++.|.+.+.+
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999999886654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=6.1e-18  Score=137.02  Aligned_cols=118  Identities=16%  Similarity=0.141  Sum_probs=79.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ--------------------QEPTIGAAFFTQILSLSEATVKFDIWDTA   67 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   67 (198)
                      ...++|+|+|++|+|||||+++|+.......                    ...+.|.+.......+....+.+.|||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            4569999999999999999999986311000                    00111222222223333445789999999


Q ss_pred             CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      |+..|...+..++..+|++|+|+|+++..... ...++..+   ...+.|+++++||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            99999888888999999999999998754322 22222222   224678999999999853

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.77  E-value=2.9e-18  Score=130.98  Aligned_cols=112  Identities=16%  Similarity=0.101  Sum_probs=70.2

Q ss_pred             EEEEEEeCCCchh-------------hcccchhhhcCCCeEEEEEECCChhhH-HHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059           59 VKFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANK  124 (198)
Q Consensus        59 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK  124 (198)
                      ..+.||||||...             +...+..++..+|++++|+|.++.... .....+...+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4688999999743             445667788999999999997432211 1111222222   2346799999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHcCCeEEEEccC---C---CCCHHHHHHHHHHHHHh
Q 048059          125 SDLDSQREVPTEEGEQFSQENGMFYIETSAK---T---AQNINELFYEIAKRLAR  173 (198)
Q Consensus       125 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~l~~~~~~  173 (198)
                      +|+........+.........+..++++|+.   +   +.|+.++++.+...+..
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            9986544422232221111122566766654   4   68999999998887754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.77  E-value=1.6e-17  Score=138.74  Aligned_cols=124  Identities=18%  Similarity=0.056  Sum_probs=84.2

Q ss_pred             CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------CC---CCcceeEEEEEEEeC-------Cc
Q 048059            1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKG--QFYDQ-----------QE---PTIGAAFFTQILSLS-------EA   57 (198)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~~-----------~~---~~~~~~~~~~~~~~~-------~~   57 (198)
                      |+.........+|+|+|+.|+|||||+++|+..  .+...           ..   ...+.+.......+.       +.
T Consensus         1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~   80 (704)
T 2rdo_7            1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE   80 (704)
T ss_pred             CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence            444334455689999999999999999999752  11100           00   011222222222222       23


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      .+.+.||||||+.+|...+..+++.+|++|+|+|+++....+....|.. ...   .+.|+++++||+|+.
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~  147 (704)
T 2rdo_7           81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRM  147 (704)
T ss_pred             ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCcc
Confidence            3889999999999998889999999999999999988765544444432 222   457899999999985

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=3.4e-18  Score=142.64  Aligned_cols=125  Identities=18%  Similarity=0.105  Sum_probs=85.4

Q ss_pred             CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC-----------CCC---CcceeEEEEEEEeCCcEEEEEEE
Q 048059            1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIK--GQFYDQ-----------QEP---TIGAAFFTQILSLSEATVKFDIW   64 (198)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~--~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~l~   64 (198)
                      |+...+.....+|+|+|++|+|||||+++|+.  +.....           +.+   ..+.+.......+....+.+.||
T Consensus         1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~li   80 (693)
T 2xex_A            1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII   80 (693)
T ss_dssp             -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEE
T ss_pred             CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEE
Confidence            56665556679999999999999999999985  221100           000   01111111112222234678999


Q ss_pred             eCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        65 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      ||||+..+...+..+++.+|++|+|+|+++..+......|.. +..   .+.|+++++||+|+..
T Consensus        81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            999999998888999999999999999998776666555543 333   3579999999999853

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.76  E-value=8.4e-19  Score=137.95  Aligned_cols=162  Identities=17%  Similarity=0.208  Sum_probs=83.1

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ--------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----   74 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----   74 (198)
                      ....++|+|+|++|||||||++.|++..+....        .++.+.......+...+....+++||++|...+..    
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            345789999999999999999999987653111        11222111111112223335789999999754311    


Q ss_pred             ---------------------cchhhhcCCCeEEEEEECCCh-hhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           75 ---------------------LAPMYYRGAAAAVVVYDISNM-DTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        75 ---------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                                           +...++.++++.+++|..... .+++... .|+..+.    ...|+++|+||+|+...+
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence                                 122344556655555554332 3444443 4555553    367999999999986544


Q ss_pred             CCCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          132 EVPT--EEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      ++..  +.+..++...+++++++|++++.++.++|..+...+.
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            4433  5667777888999999999999999998887776543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=2.4e-18  Score=134.89  Aligned_cols=85  Identities=20%  Similarity=0.115  Sum_probs=47.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEE-------------------eCC-cEEEEEEEeCCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILS-------------------LSE-ATVKFDIWDTAG   68 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~g   68 (198)
                      ++|+|+|.+|||||||+++|++........+  |.........+.                   +.+ ...++.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998763222221  211121111111                   122 246799999999


Q ss_pred             chh----hcccch---hhhcCCCeEEEEEECCCh
Q 048059           69 QER----YHSLAP---MYYRGAAAAVVVYDISNM   95 (198)
Q Consensus        69 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   95 (198)
                      ...    ...+..   .+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222322   446899999999999774

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.70  E-value=1e-17  Score=121.58  Aligned_cols=155  Identities=18%  Similarity=0.120  Sum_probs=94.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCcce--------eEEEEEEEe----------------CCcEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQ------EPTIGA--------AFFTQILSL----------------SEATV   59 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~----------------~~~~~   59 (198)
                      ..+|+++|.+|||||||+++|+........      .+..+.        ......+..                .....
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            478999999999999999999865221110      010000        000111111                11234


Q ss_pred             EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH
Q 048059           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE  139 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  139 (198)
                      .+.+|||+|+.....   .+....+.+++|+|+++...  ....+...      ...|+++++||+|+........+...
T Consensus       110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~  178 (221)
T 2wsm_A          110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKMK  178 (221)
T ss_dssp             SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred             CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHHH
Confidence            678999988511111   11135788999999876432  11111111      13578999999998543333456666


Q ss_pred             HHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          140 QFSQEN--GMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       140 ~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      .++...  +++++++||++|.|+++++++|.+.+....
T Consensus       179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            666554  478999999999999999999998875543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=1.2e-15  Score=117.57  Aligned_cols=144  Identities=16%  Similarity=0.128  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhhc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERYH   73 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~   73 (198)
                      ++|+++|.+|||||||+++|++........|  |.+.+..  .+.+.+.               ...+++|||||...+.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            6899999999999999999998664322222  3332221  2223332               1468999999986542


Q ss_pred             ----ccc---hhhhcCCCeEEEEEECCCh----------hhHHHHHHHHHH-----------------------------
Q 048059           74 ----SLA---PMYYRGAAAAVVVYDISNM----------DTFNRANKLVQE-----------------------------  107 (198)
Q Consensus        74 ----~~~---~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~-----------------------------  107 (198)
                          .+.   ..+++++|++++|+|+++.          ..++++..+...                             
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~  160 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF  160 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence                232   2347899999999999752          222222211111                             


Q ss_pred             -----------HHH-------------------h-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059          108 -----------LQR-------------------Q-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT  156 (198)
Q Consensus       108 -----------~~~-------------------~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (198)
                                 +..                   . .....|+++++|+.|.........+.+.+++...+++++++||+.
T Consensus       161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                       110                   0 012489999999999643223345677888888899999999763

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.67  E-value=5.5e-19  Score=128.75  Aligned_cols=154  Identities=16%  Similarity=0.149  Sum_probs=90.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEE------------EEEEEeC-CcE-----------------
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFF------------TQILSLS-EAT-----------------   58 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   58 (198)
                      ..++|+|+|.+|||||||+++|+...+...+.++++.++.            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            3589999999999999999999976544333333332221            1111111 111                 


Q ss_pred             --EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059           59 --VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE  136 (198)
Q Consensus        59 --~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  136 (198)
                        ..+.++|++|.-...   ..+-...+..+.+.|.........  .....      ...|.++|+||+|+...+....+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence              134455555521000   011112344556666432111100  00011      12578999999998654334566


Q ss_pred             HHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          137 EGEQFSQEN--GMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      +...++...  +++++++||++|.|++++|++|.+.+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            677777654  6799999999999999999999987754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.67  E-value=2.2e-17  Score=128.01  Aligned_cols=158  Identities=14%  Similarity=0.144  Sum_probs=93.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCc---------------------------------------
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ------EPTI---------------------------------------   43 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~------~~~~---------------------------------------   43 (198)
                      ...+|+|+|.+|||||||+++|++..+....      .|+.                                       
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999987753211      1210                                       


Q ss_pred             ----ceeEEEEEEE-eCCcEEEEEEEeCCCch-------------hhcccchhhhcCCCeEEE-EEECCChhhHHHHHHH
Q 048059           44 ----GAAFFTQILS-LSEATVKFDIWDTAGQE-------------RYHSLAPMYYRGAAAAVV-VYDISNMDTFNRANKL  104 (198)
Q Consensus        44 ----~~~~~~~~~~-~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~  104 (198)
                          +.......+. .......+.||||||..             .+..+...|+.+++.+|+ |.+.+....-..   +
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~  186 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A  186 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence                0000000000 11123568999999963             344566677766665555 555543222111   2


Q ss_pred             HHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH--HHHcCC-eEEEEccCCCCCHHHHHHHHHH
Q 048059          105 VQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF--SQENGM-FYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus       105 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      ...+........|+++|+||+|+........+.....  ....++ +++.+||+++.|++++++++..
T Consensus       187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2223333345679999999999865433222221110  001232 5678999999999999999876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.64  E-value=3.3e-16  Score=121.44  Aligned_cols=104  Identities=13%  Similarity=0.070  Sum_probs=69.7

Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHH
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEE  137 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~  137 (198)
                      .+.+.||||||...   ........+|++++|+|....+..+.+...        -...|+++|+||+|+...... ...
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~-~~~  238 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEA-RLA  238 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHH-HHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHH-HHH
Confidence            35788999999432   223445889999999998765443222210        123588999999998532111 111


Q ss_pred             HHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          138 GEQFSQE----------NGMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       138 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ...+...          ++.+++++||++|.|+++++++|.+.+..
T Consensus       239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1222221          25789999999999999999999988765

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.63  E-value=7.2e-16  Score=131.10  Aligned_cols=117  Identities=18%  Similarity=0.213  Sum_probs=85.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCC------------CCC------CCCCCcceeEEEEEEE------------eCCc
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQ------------FYD------QQEPTIGAAFFTQILS------------LSEA   57 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~------------~~~------~~~~~~~~~~~~~~~~------------~~~~   57 (198)
                      ....||+|+|++++|||||+++|+...            +..      ....|+........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            446899999999999999999998631            100      0111222222222232            2345


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      .+.+.||||||+.+|...+..+++.+|++|+|+|+++..+++....|.....    .+.|+++++||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            7889999999999999999999999999999999999877777665654332    357899999999975

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.62  E-value=2.4e-15  Score=122.39  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=80.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCC------------------CCC--CCCCCcceeEEEEEEEeCCcEEEEEEEeCCC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQ------------------FYD--QQEPTIGAAFFTQILSLSEATVKFDIWDTAG   68 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   68 (198)
                      +..||+|+|+.++|||||..+|+...                  +..  .....-|.+.....+.+.++.+.+.|+||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            46899999999999999999986310                  000  0001112222233344455668899999999


Q ss_pred             chhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           69 QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      +.+|.......++-+|++|+|+|+...-..+...-|. ....   .++|+++++||.|..
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~---~~lp~i~fINK~Dr~  165 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRM---RATPVMTFVNKMDRE  165 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSC
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHH---hCCceEEEEecccch
Confidence            9999999999999999999999998765444444443 3333   457999999999974

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.60  E-value=5.4e-16  Score=119.86  Aligned_cols=104  Identities=13%  Similarity=0.060  Sum_probs=62.5

Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHH
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEE  137 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~  137 (198)
                      .+.+.++||+|...   ........+|++++|+|.+.+...+.+..   .+     -..|.++++||+|+...... ...
T Consensus       166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~  233 (349)
T 2www_A          166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI  233 (349)
T ss_dssp             TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred             CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence            35678999999531   12345678999999999876543322211   11     23477889999998531110 011


Q ss_pred             HHHHHH----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          138 GEQFSQ----------ENGMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       138 ~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ...+..          .+..+++.+||++|.|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            122221          124578999999999999999999887643

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.60  E-value=7e-15  Score=109.27  Aligned_cols=110  Identities=18%  Similarity=0.086  Sum_probs=67.7

Q ss_pred             EEEEEEeCCCchhhcccch------hhhcCCCeEEEEEECCChh---hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           59 VKFDIWDTAGQERYHSLAP------MYYRGAAAAVVVYDISNMD---TFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      +.+.||||||.........      ..+.. +++++++|.....   .+.....+......  ....|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence            5788999999876543322      13456 8888888875332   22222111111111  13468999999999854


Q ss_pred             CCCCCHHHHHHH----------------------------HHHcC--CeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          130 QREVPTEEGEQF----------------------------SQENG--MFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       130 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ..+.  ++..++                            +..++  ++++++||+++.|+++++++|.+.+..
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            3211  111111                            23333  489999999999999999999887654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.59  E-value=1.4e-15  Score=123.77  Aligned_cols=117  Identities=16%  Similarity=0.249  Sum_probs=79.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCcceeEEEEEEEeCC----------------------------
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY---DQQEPTIGAAFFTQILSLSE----------------------------   56 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~----------------------------   56 (198)
                      ....+|+|+|.+|+|||||+|+|++..+.   ....++..  ..........                            
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEEEEECCSSSEEECCC------------------CCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            34689999999999999999999998753   22222221  1010000000                            


Q ss_pred             -cE----------EEEEEEeCCCchh-----------hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCC
Q 048059           57 -AT----------VKFDIWDTAGQER-----------YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ  114 (198)
Q Consensus        57 -~~----------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  114 (198)
                       ..          ..+.||||||...           +...+..++..+|++|+|+|+++....+....|+..+..   .
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~  217 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H  217 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence             00          2578999999864           345566778899999999999875444555566555432   4


Q ss_pred             CceEEEEEeCCCCCC
Q 048059          115 IVVMALAANKSDLDS  129 (198)
Q Consensus       115 ~~p~iiv~nK~Dl~~  129 (198)
                      ..|+++|+||+|+..
T Consensus       218 ~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          218 EDKIRVVLNKADMVE  232 (550)
T ss_dssp             GGGEEEEEECGGGSC
T ss_pred             CCCEEEEEECCCccC
Confidence            578999999999864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=4.9e-15  Score=114.85  Aligned_cols=152  Identities=20%  Similarity=0.159  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEeCC-------------------cEEEEEEEeCCCc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSLSE-------------------ATVKFDIWDTAGQ   69 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~   69 (198)
                      ++|+++|.+|||||||+++|++........+  |...+....  .+.+                   ....+.+|||||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5799999999999999999997642211111  222222121  2221                   2356899999998


Q ss_pred             hhhc----ccc---hhhhcCCCeEEEEEECCCh----------hhHHHHHHHHH--------------------------
Q 048059           70 ERYH----SLA---PMYYRGAAAAVVVYDISNM----------DTFNRANKLVQ--------------------------  106 (198)
Q Consensus        70 ~~~~----~~~---~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~--------------------------  106 (198)
                      ....    .+.   ...++++|++++|+|+++.          ..++++..+..                          
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~  159 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE  159 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence            6542    122   2347899999999999751          11221111000                          


Q ss_pred             ---------H----HHH-------------------hC-CCCceEEEEEeCCCCC--CC-CCCCHHHHHHHHHHcCCeEE
Q 048059          107 ---------E----LQR-------------------QG-NQIVVMALAANKSDLD--SQ-REVPTEEGEQFSQENGMFYI  150 (198)
Q Consensus       107 ---------~----~~~-------------------~~-~~~~p~iiv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~  150 (198)
                               .    +..                   .. -...|+++++||.|..  .. +....+.++++++..+++++
T Consensus       160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv  239 (368)
T 2dby_A          160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV  239 (368)
T ss_dssp             GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEE
Confidence                     0    000                   00 1136999999999842  21 13445777888888899999


Q ss_pred             EEccCCCCCHHHHH
Q 048059          151 ETSAKTAQNINELF  164 (198)
Q Consensus       151 ~~Sa~~~~~i~~~~  164 (198)
                      ++||+.+.++.++.
T Consensus       240 ~iSAk~E~el~eL~  253 (368)
T 2dby_A          240 VVSARLEAELAELS  253 (368)
T ss_dssp             EECHHHHHHHHTSC
T ss_pred             EeechhHHHHHHhc
Confidence            99998855554443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.54  E-value=1.1e-14  Score=112.21  Aligned_cols=104  Identities=18%  Similarity=0.087  Sum_probs=64.5

Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH--
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT--  135 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--  135 (198)
                      .+.+.||||||......   .....+|++++|+|.+....++.+..   ..     ...|.++|+||+|+........  
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence            45789999999654332   24688999999999875543221111   00     1357889999999854211110  


Q ss_pred             HHHHHHHHHc-------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          136 EEGEQFSQEN-------GMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       136 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      ++........       ..+++++||++|.|+++++++|...+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1111111111       357899999999999999999998765

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.50  E-value=7.9e-13  Score=110.89  Aligned_cols=124  Identities=19%  Similarity=0.113  Sum_probs=81.0

Q ss_pred             CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--C------CCCcceeEEEEEEEe--C-----Cc
Q 048059            1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKG--------QFYDQ--Q------EPTIGAAFFTQILSL--S-----EA   57 (198)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~--------~~~~~--~------~~~~~~~~~~~~~~~--~-----~~   57 (198)
                      |+...+-..-.||+|+|+.++|||||..+|+..        .....  +      ...-|.+.....+.+  .     ..
T Consensus         4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~   83 (709)
T 4fn5_A            4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD   83 (709)
T ss_dssp             --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred             CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence            666655566689999999999999999998731        11100  0      001122222222222  1     23


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      .+.+.|+||||+.+|.......++-+|++|+|+|+...-..+...-|.....    .++|.++++||.|..
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence            6889999999999999999999999999999999986654444444444333    346889999999974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.50  E-value=5.1e-14  Score=106.80  Aligned_cols=96  Identities=20%  Similarity=0.158  Sum_probs=78.2

Q ss_pred             chhhcccchhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC-HHHHHHHHHHcC
Q 048059           69 QERYHSLAPMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP-TEEGEQFSQENG  146 (198)
Q Consensus        69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~  146 (198)
                      ++++..+.+.+++++|++++|||++++. +++.+..|+..+..   .+.|+++|+||+|+.....+. .++...++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5677888888999999999999999886 88888899886654   457999999999986433212 344566666778


Q ss_pred             CeEEEEccCCCCCHHHHHHHH
Q 048059          147 MFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus       147 ~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      ++++++||++|.|++++++.+
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHhhc
Confidence            999999999999999999874

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.49  E-value=7.1e-13  Score=102.77  Aligned_cols=152  Identities=12%  Similarity=0.099  Sum_probs=92.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-------cchhhhcC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-------LAPMYYRG   82 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~   82 (198)
                      ..+|+++|.||||||||+|+|++........|....+.....+.+.+  .+++++||||...-..       ..-..+++
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            46899999999999999999998665444444433333344445554  5678999999632111       12234578


Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCC--------CCCCCCHHHHHHHHHHcCCeEEEE
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQG--NQIVVMALAANKSDLD--------SQREVPTEEGEQFSQENGMFYIET  152 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~--------~~~~~~~~~~~~~~~~~~~~~~~~  152 (198)
                      +|++++|+|.+++..  ..+.....+....  -...|.+++.||.|..        .....+.++.+.+...+.+..-++
T Consensus       150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            999999999998743  2222222333211  1345777888999963        223455666676666655433333


Q ss_pred             ccCCCCCHHHHHH
Q 048059          153 SAKTAQNINELFY  165 (198)
Q Consensus       153 Sa~~~~~i~~~~~  165 (198)
                      -...+...+++.+
T Consensus       228 ~~~~nv~eddl~d  240 (376)
T 4a9a_A          228 AFRCDATVDDLID  240 (376)
T ss_dssp             EECSCCCHHHHHH
T ss_pred             eecccCCHHHHHH
Confidence            3333444444443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.48  E-value=6.6e-14  Score=116.83  Aligned_cols=159  Identities=14%  Similarity=0.120  Sum_probs=94.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCcce------------------------------------------
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGA------------------------------------------   45 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~------------------------------------------   45 (198)
                      ...+|+|+|.+++|||||+|+|++..+ +.....+...                                          
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            346999999999999999999998765 2211111100                                          


Q ss_pred             ------eEEEEEEE-eCCcEEEEEEEeCCCchh-------------hcccchhhh-cCCCeEEEEEECCChhhHHHHHHH
Q 048059           46 ------AFFTQILS-LSEATVKFDIWDTAGQER-------------YHSLAPMYY-RGAAAAVVVYDISNMDTFNRANKL  104 (198)
Q Consensus        46 ------~~~~~~~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~  104 (198)
                            ......+. .......+.|+||||...             ...+...++ ..+|++++|+|++......+...+
T Consensus       130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                  00000000 011123478999999543             122333344 578999999999764333232223


Q ss_pred             HHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH--HHcC-CeEEEEccCCCCCHHHHHHHHHHH
Q 048059          105 VQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS--QENG-MFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       105 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      +..+   .....|+++|+||+|+...............  ...+ .+++.+||++|.|++++++.+...
T Consensus       210 l~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          210 AKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHH---HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            3333   2346799999999998754443222111000  0112 256789999999999999998873

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.47  E-value=1.9e-14  Score=119.17  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh--CCCCC------C--C---CC---CcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK--GQFYD------Q--Q---EP---TIGAAFFTQILSLSEATVKFDIWDTAGQERYHS   74 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~--~~~~~------~--~---~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   74 (198)
                      .||+|+|+.++|||||..+|+.  +....      .  .   .+   .-|.+.....+.+..+.+.+.|+||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            5899999999999999999873  11110      0  0   00   003333344445566677899999999999999


Q ss_pred             cchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           75 LAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      .....++-+|++|+|+|+...-..+...-|.. ...   .++|.++++||.|..
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~---~~lp~i~~INKmDr~  132 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK---MGIPTIFFINKIDQN  132 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH---HTCSCEECCEECCSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCeEEEEeccccc
Confidence            99999999999999999986544333333433 333   235788899999974

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.47  E-value=2.7e-13  Score=104.30  Aligned_cols=104  Identities=12%  Similarity=0.067  Sum_probs=62.5

Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHH
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEE  137 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~  137 (198)
                      ...+.|+||+|.....   ......+|.+++++|....+..+.+...   +.     ..+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence            4578899999964321   2345789999999998654322211111   11     13456677999964322111111


Q ss_pred             HHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          138 GEQFSQE----------NGMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       138 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      .+.+...          +..+++.+||+++.|++++++.|.+.+.
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2233221          1357899999999999999999988654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.42  E-value=8.7e-14  Score=98.40  Aligned_cols=107  Identities=7%  Similarity=-0.088  Sum_probs=68.4

Q ss_pred             CCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHH---HHHHHHhC-CCCceEEEEEeCC-CCCCCCCCCHHHHHH
Q 048059           66 TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKL---VQELQRQG-NQIVVMALAANKS-DLDSQREVPTEEGEQ  140 (198)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~-~~~~p~iiv~nK~-Dl~~~~~~~~~~~~~  140 (198)
                      .+|++.++.+|.+|+.++|++|||+|.+|.+-++.-..+   ...+.... ..+.|++|++||. |+..  ..+..++.+
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e  186 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  186 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence            348889999999999999999999999987544322222   22222221 2578999999995 6643  233333332


Q ss_pred             HHH----HcCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059          141 FSQ----ENGMFYIETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       141 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ...    ...+.+..|||.+|+|+.+.++||...+..+
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            221    2456799999999999999999998766443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.35  E-value=2.3e-11  Score=94.90  Aligned_cols=85  Identities=14%  Similarity=0.096  Sum_probs=55.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh-
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY-   72 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~-   72 (198)
                      ..+|+++|++|||||||+++|++... .....|....+.....+.+.+.               ...+.+||+||.... 
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            57999999999999999999999664 3333332222222223333331               135789999995322 


Q ss_pred             ------cccchhhhcCCCeEEEEEECCC
Q 048059           73 ------HSLAPMYYRGAAAAVVVYDISN   94 (198)
Q Consensus        73 ------~~~~~~~~~~~d~~i~v~d~~~   94 (198)
                            ...+...++.+|++++|+|..+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  2233445688999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.35  E-value=7.2e-13  Score=103.20  Aligned_cols=87  Identities=11%  Similarity=0.038  Sum_probs=49.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhhcc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERYHS   74 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~   74 (198)
                      .++|+++|.+|||||||+++|++........|..+.+.....+.+.+.               ...+++||+||......
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            578999999999999999999987653333332222222223333321               23589999999875443


Q ss_pred             -------cchhhhcCCCeEEEEEECCChh
Q 048059           75 -------LAPMYYRGAAAAVVVYDISNMD   96 (198)
Q Consensus        75 -------~~~~~~~~~d~~i~v~d~~~~~   96 (198)
                             .+..+++++|++++|+|+++.+
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC----
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence                   4456788999999999987543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.34  E-value=1.5e-12  Score=96.36  Aligned_cols=107  Identities=7%  Similarity=-0.061  Sum_probs=73.5

Q ss_pred             CCCchhhcccchhhhcCCCeEEEEEECCChhhHH---HHHHHHHHHHHh-CCCCceEEEEEeC-CCCCCCCCCCHHHHHH
Q 048059           66 TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFN---RANKLVQELQRQ-GNQIVVMALAANK-SDLDSQREVPTEEGEQ  140 (198)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~-~~~~~p~iiv~nK-~Dl~~~~~~~~~~~~~  140 (198)
                      .+|++..+.+|.+|+.++|++|||+|.+|.+.++   ++..+...+... ...+.|++|++|| .|+..  ..+..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            4678899999999999999999999999887543   222222333222 1356899999996 58743  233333332


Q ss_pred             HHH----HcCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059          141 FSQ----ENGMFYIETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       141 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ...    ...+.+..|||.+|+|+.+.++||...+..+
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            211    1356799999999999999999999877543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.04  E-value=8e-10  Score=85.90  Aligned_cols=97  Identities=21%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 048059           68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF----SQ  143 (198)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~  143 (198)
                      ..+.|...++.+.+.++++++|+|++++.     ..|...+.+.. .+.|+++|+||+|+.... ...+...++    ++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            45788889999999999999999999864     44555555543 367999999999986433 333444443    55


Q ss_pred             HcCC---eEEEEccCCCCCHHHHHHHHHHHH
Q 048059          144 ENGM---FYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ..++   .++.+||++|.|++++++.|.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6677   799999999999999999987643

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.03  E-value=8.8e-10  Score=88.62  Aligned_cols=151  Identities=15%  Similarity=0.104  Sum_probs=83.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHH------hCCCC---C-CCCCC-----------cceeEEEEEEE-------------e
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFI------KGQFY---D-QQEPT-----------IGAAFFTQILS-------------L   54 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~------~~~~~---~-~~~~~-----------~~~~~~~~~~~-------------~   54 (198)
                      ....|+|+|.+||||||+++.|.      +.+..   . .+.+.           .+..+......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      32210   0 00000           01111110000             0


Q ss_pred             CCcEEEEEEEeCCCchhhcc-cchh---h--hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE-EEEEeCCCC
Q 048059           55 SEATVKFDIWDTAGQERYHS-LAPM---Y--YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM-ALAANKSDL  127 (198)
Q Consensus        55 ~~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl  127 (198)
                      ....+.+.|+||||...... ++..   .  ...+|.+++|+|+......   ......+...    .|+ ++|+||.|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~----~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK----VDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH----HCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh----cCceEEEEeCCcc
Confidence            01345788999999753211 1111   1  2278999999999765431   1122223221    464 788999997


Q ss_pred             CCCCCCCHHHHHHHHHHcCCeE------------------EEEccCCCCC-HHHHHHHHHHH
Q 048059          128 DSQREVPTEEGEQFSQENGMFY------------------IETSAKTAQN-INELFYEIAKR  170 (198)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~  170 (198)
                      ......    +.......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            532221    222333444443                  3368888988 98888888765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.98  E-value=4e-11  Score=93.25  Aligned_cols=143  Identities=13%  Similarity=0.116  Sum_probs=82.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC----CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------ch
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ----FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------AP   77 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~   77 (198)
                      ..+|+++|.+|+|||||+|+|++..    .........+++.......+...   +.++||||.......        ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            3579999999999999999999751    01111122234444444444443   679999996422211        11


Q ss_pred             hhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC
Q 048059           78 MYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK  155 (198)
Q Consensus        78 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (198)
                      .++  ...+.++++++....-.+..+..    +......+.|+++++||.|....... ......+.+..+..+...++.
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~  313 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKR  313 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred             HHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCch
Confidence            111  56899999998732210001100    11112356799999999997543332 344456666777766655655


Q ss_pred             CCCCH
Q 048059          156 TAQNI  160 (198)
Q Consensus       156 ~~~~i  160 (198)
                      ...++
T Consensus       314 ~~~~~  318 (369)
T 3ec1_A          314 YAAEF  318 (369)
T ss_dssp             GTTTC
T ss_pred             hhhhc
Confidence            44433

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.95  E-value=3.5e-09  Score=83.23  Aligned_cols=140  Identities=15%  Similarity=0.161  Sum_probs=67.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEe--CCcEEEEEEEeCCCchhh--------------
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSL--SEATVKFDIWDTAGQERY--------------   72 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~--------------   72 (198)
                      ++++|+|++|+|||||++.|++..+......  ..+.......+..  ......++++|++|....              
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            6799999999999999999998643321111  1122221222212  222346789999875321              


Q ss_pred             cccchhhh-------------cCC--Ce-EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC--
Q 048059           73 HSLAPMYY-------------RGA--AA-AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP--  134 (198)
Q Consensus        73 ~~~~~~~~-------------~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--  134 (198)
                      ...+..++             ..+  |+ ++|+.|...+-+..++ ..   +... ....|+++|.||+|.....+..  
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-ei---lk~L-~~~~~vI~Vi~KtD~Lt~~E~~~l  197 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VT---MKKL-DSKVNIIPIIAKADAISKSELTKF  197 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HH---HHHT-CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HH---HHHH-hhCCCEEEEEcchhccchHHHHHH
Confidence            01111111             112  23 5556665433222221 22   2222 2568999999999975422210  


Q ss_pred             HHHHHHHHHHcCCeEEEEccC
Q 048059          135 TEEGEQFSQENGMFYIETSAK  155 (198)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~Sa~  155 (198)
                      ...+.......|++++.+|..
T Consensus       198 ~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          198 KIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHcCCcEEecCCC
Confidence            111111122346777777753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.95  E-value=2.7e-11  Score=94.19  Aligned_cols=137  Identities=12%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCC-----CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----cchhh-
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFY-----DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----LAPMY-   79 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~~~~-   79 (198)
                      ..+|+++|.+|+|||||+|+|++....     .......+++.....+.+...   +.++||||......    +.... 
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            357999999999999999999975311     112233344444444554443   67999999643221    11111 


Q ss_pred             -----hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059           80 -----YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus        80 -----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                           ....+.++++++....-.+..+..    +......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence                 256788888887632110011100    11112346799999999997543322 34445555666665444443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.90  E-value=5.5e-08  Score=76.44  Aligned_cols=158  Identities=13%  Similarity=0.096  Sum_probs=84.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeE--EEEEEEeCCcEEEEEEEeCCCchhhcccchhh-----hc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTI-GAAF--FTQILSLSEATVKFDIWDTAGQERYHSLAPMY-----YR   81 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~-----~~   81 (198)
                      ...++|+|++|||||||++.|.+......-.-.. +...  ....... ...-.+.++|++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3579999999999999999999843322211111 1110  0111111 111146799999864221111222     23


Q ss_pred             CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC-------CCCCCCHHHH----HHHHH----HcC
Q 048059           82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD-------SQREVPTEEG----EQFSQ----ENG  146 (198)
Q Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-------~~~~~~~~~~----~~~~~----~~~  146 (198)
                      ..+.+++ ++....+ -.. ..+...+..   .+.|+++|.||.|+.       ..+....+..    .++..    +.+
T Consensus       148 ~~~~~~~-lS~G~~~-kqr-v~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFK-KND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCC-HHH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCcc-HHH-HHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455555 7765211 111 112222222   346999999999962       2222223333    33321    222


Q ss_pred             ---CeEEEEcc--CCCCCHHHHHHHHHHHHHhh
Q 048059          147 ---MFYIETSA--KTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       147 ---~~~~~~Sa--~~~~~i~~~~~~l~~~~~~~  174 (198)
                         ..++.+|+  ..+.|++++.+.+.+.+.+.
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence               35788999  56677999999998776544

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.86  E-value=4.1e-09  Score=81.99  Aligned_cols=97  Identities=19%  Similarity=0.188  Sum_probs=71.4

Q ss_pred             CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 048059           68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF----SQ  143 (198)
Q Consensus        68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~  143 (198)
                      .++.|....+.+++.++++++|+|++++.+     .|...+.+.. .+.|+++|+||+|+.... ...+...++    ++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            467888899999999999999999998763     3433444433 367999999999986432 223444443    45


Q ss_pred             HcCC---eEEEEccCCCCCHHHHHHHHHHHH
Q 048059          144 ENGM---FYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ..+.   .++.+||++|.|++++++.+.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5666   689999999999999999987654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.82  E-value=2.8e-08  Score=74.01  Aligned_cols=25  Identities=28%  Similarity=0.558  Sum_probs=22.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++++|+|++|+|||||++.|++..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999999998743

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.80  E-value=6.1e-09  Score=78.05  Aligned_cols=101  Identities=11%  Similarity=0.044  Sum_probs=69.1

Q ss_pred             EEeCCCch-hhcccchhhhcCCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH
Q 048059           63 IWDTAGQE-RYHSLAPMYYRGAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE  139 (198)
Q Consensus        63 l~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  139 (198)
                      +-..||+. .........+.++|++++|+|+.++.+..  .+..|+        .+.|.++|+||+|+....  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            34578875 44456667789999999999999987764  344332        467999999999986421  112223


Q ss_pred             HHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          140 QFSQENGMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       140 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ++.+..+.+++.+||+++.|++++++.+.+.+.+
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            3334457899999999999999999988776653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.63  E-value=3.1e-08  Score=74.19  Aligned_cols=58  Identities=19%  Similarity=0.283  Sum_probs=35.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE   70 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   70 (198)
                      ..++|+++|.||+|||||+|+|++.... ......+.+.....+..+.   .+.++||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            4689999999999999999999976532 2223333333222333332   46799999974

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.58  E-value=2.2e-08  Score=74.24  Aligned_cols=57  Identities=23%  Similarity=0.239  Sum_probs=35.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      ++++++|.+|+|||||+|+|.+.... ...++.|.+.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            59999999999999999999976543 2233344433222233222   467999999753

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.54  E-value=4.7e-07  Score=71.56  Aligned_cols=86  Identities=13%  Similarity=0.020  Sum_probs=51.0

Q ss_pred             EEEEEEeCCCchhhccc----ch--hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHSL----AP--MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      +.+.|+||+|.......    ..  .....+|.+++|+|++.......   ....+....   .+..||+||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~~---~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEAT---PIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHSC---TTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhhC---CCeEEEEECCCCccc--
Confidence            67889999995322110    00  11235799999999876543222   223333322   245688899997431  


Q ss_pred             CCHHHHHHHHHHcCCeEEEEcc
Q 048059          133 VPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                        .-.+.......+.|+.+++.
T Consensus       255 --gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC
T ss_pred             --ccHHHHHHHHHCCCEEEEEc
Confidence              23345555567888887775

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.36  E-value=5.8e-07  Score=73.57  Aligned_cols=64  Identities=13%  Similarity=-0.007  Sum_probs=39.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CcceeEEEEEE--Ee-CCcEEEEEEEeCCCchh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP-TIGAAFFTQIL--SL-SEATVKFDIWDTAGQER   71 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~   71 (198)
                      ...+.|+|+|.||+|||||+|+|++......... +.+.+...+.+  .. ......+.|+||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3468899999999999999999998653211111 11222112221  11 12334678999999753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.29  E-value=2.1e-07  Score=68.92  Aligned_cols=91  Identities=15%  Similarity=0.026  Sum_probs=60.0

Q ss_pred             CCCchh-hcccchhhhcCCCeEEEEEECCChhhHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH
Q 048059           66 TAGQER-YHSLAPMYYRGAAAAVVVYDISNMDTFNR--ANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS  142 (198)
Q Consensus        66 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  142 (198)
                      .||+.. ........+.++|+++.|+|+.++.+...  +. ++         +.|.++|+||+|+.....  .+...++.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence            456542 23345567789999999999998876542  22 21         579999999999864211  12223344


Q ss_pred             HHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059          143 QENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus       143 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      +..+.++ .+||+++.|++++++.+..
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            4567888 9999999999998877543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.28  E-value=1.5e-07  Score=74.29  Aligned_cols=87  Identities=14%  Similarity=0.037  Sum_probs=51.8

Q ss_pred             EEEEEEEeCCCchh--hcc----cchh--hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           58 TVKFDIWDTAGQER--YHS----LAPM--YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        58 ~~~~~l~D~~g~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      .+.+.|+||+|...  ...    ....  .....+.+++|+|+...+...   .....+....   .+..||+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---PIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---SSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---CCcEEEEecccccc
Confidence            45678999999633  111    0111  112568999999987654322   2233343322   25678899999642


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059          130 QREVPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                          ..-.+.......+.|+.+++.
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT  273 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC
Confidence                123455556667899888876

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.28  E-value=3.1e-06  Score=67.05  Aligned_cols=84  Identities=15%  Similarity=0.052  Sum_probs=47.8

Q ss_pred             EEEEEEEeCCCchhhcc-cch-----hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCc-e-EEEEEeCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHS-LAP-----MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV-V-MALAANKSDLDS  129 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~Dl~~  129 (198)
                      .+.+.|+||||...... +..     ..+..+|.+++|+|+.....   .......+.    ... | ..+|+||.|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence            45678999999643211 111     11236899999999865432   122222222    223 4 788999999742


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEE
Q 048059          130 QREVPTEEGEQFSQENGMFYIET  152 (198)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~  152 (198)
                      .    ...+..+....+.++..+
T Consensus       253 ~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEE
T ss_pred             c----hHHHHHHHHHHCCCEEEe
Confidence            1    122344566677776655

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.23  E-value=9.5e-08  Score=76.63  Aligned_cols=102  Identities=15%  Similarity=0.171  Sum_probs=59.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch--hhcccc--------h
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE--RYHSLA--------P   77 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--~~~~~~--------~   77 (198)
                      .....|+++|.+||||||+.++|...... ...++.............+......+||..|.+  +....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999998753211 111211110000000001111234578988873  223333        4


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHh
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ  111 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  111 (198)
                      .++...++.++|+|.++. +.+....|+..+...
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            566667888999999887 566667777766654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.21  E-value=3.3e-06  Score=63.65  Aligned_cols=91  Identities=18%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             EEEEEEEeCCCchh--hcc-cch-----hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCC
Q 048059           58 TVKFDIWDTAGQER--YHS-LAP-----MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLD  128 (198)
Q Consensus        58 ~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~  128 (198)
                      .+.+.++||||...  ... +..     .....+|.+++|+|......   .......+..    ..+ ..+|.||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            45688999999755  211 111     12346899999999864322   1222223322    134 67888999964


Q ss_pred             CCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059          129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      .    ....+.......+.|+..++  .|++++
T Consensus       253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~  279 (297)
T 1j8m_F          253 A----KGGGALSAVAATGATIKFIG--TGEKID  279 (297)
T ss_dssp             T----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             c----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence            2    13345566777888888776  455544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.12  E-value=5e-07  Score=68.27  Aligned_cols=91  Identities=12%  Similarity=0.085  Sum_probs=58.9

Q ss_pred             hcccchhhhcCCCeEEEEEECCChhh-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCe
Q 048059           72 YHSLAPMYYRGAAAAVVVYDISNMDT-FNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQENGMF  148 (198)
Q Consensus        72 ~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~  148 (198)
                      ...+......++|.+++|+|+.+|.. ...+..++....   ..+.|.+||+||+|+......  ..+...++....+.+
T Consensus        76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~  152 (307)
T 1t9h_A           76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD  152 (307)
T ss_dssp             SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence            34455557899999999999987654 334444433222   245688999999998653210  012233343456889


Q ss_pred             EEEEccCCCCCHHHHHH
Q 048059          149 YIETSAKTAQNINELFY  165 (198)
Q Consensus       149 ~~~~Sa~~~~~i~~~~~  165 (198)
                      ++.+||.++.|+++++.
T Consensus       153 v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          153 VYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EEECCHHHHTTCTTTGG
T ss_pred             EEEEecCCCCCHHHHHh
Confidence            99999998887766544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.10  E-value=7.2e-06  Score=67.75  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .|+|+|++|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            39999999999999999999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.01  E-value=1.5e-05  Score=60.91  Aligned_cols=89  Identities=13%  Similarity=0.042  Sum_probs=50.3

Q ss_pred             EEEEEeCCCchhhcccchh------hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC
Q 048059           60 KFDIWDTAGQERYHSLAPM------YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV  133 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  133 (198)
                      .+.++|++|..........      ..-..|-.+++.|.....   ++......+....+   .-++++||.|... +  
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~~a-~--  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDADA-R--  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGGCS-C--
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCCcc-c--
Confidence            4567999986432221111      112478889999976543   23333333433221   3467779999532 1  


Q ss_pred             CHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059          134 PTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                       .-.+.......+.|+..++  +|+++
T Consensus       284 -~G~~l~~~~~~~~pi~~i~--~Ge~v  307 (328)
T 3e70_C          284 -GGAALSISYVIDAPILFVG--VGQGY  307 (328)
T ss_dssp             -CHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred             -hhHHHHHHHHHCCCEEEEe--CCCCc
Confidence             2334566677888888877  55544

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.85  E-value=3.3e-05  Score=61.26  Aligned_cols=26  Identities=15%  Similarity=0.124  Sum_probs=22.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+-.-|.|+|++++|||+|+|+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34567999999999999999999863

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.78  E-value=4.6e-05  Score=58.71  Aligned_cols=82  Identities=16%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             hhcCCCeEEEEEECCChhh-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH---HHcCCeEEEEcc
Q 048059           79 YYRGAAAAVVVYDISNMDT-FNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS---QENGMFYIETSA  154 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa  154 (198)
                      ...++|.+++|.+. +|.. ...+..++.....   .+.|++||+||+|+.....  .+....+.   ...|.+++.+||
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa  200 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSS  200 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEec
Confidence            36889999988765 4543 3444444433222   2357789999999864321  11123333   346889999999


Q ss_pred             CCCCCHHHHHHH
Q 048059          155 KTAQNINELFYE  166 (198)
Q Consensus       155 ~~~~~i~~~~~~  166 (198)
                      .++.|++++...
T Consensus       201 ~~~~gl~~L~~~  212 (358)
T 2rcn_A          201 HTQDGLKPLEEA  212 (358)
T ss_dssp             TTTBTHHHHHHH
T ss_pred             CCCcCHHHHHHh
Confidence            999999887654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.65  E-value=0.00086  Score=53.11  Aligned_cols=84  Identities=12%  Similarity=0.041  Sum_probs=45.5

Q ss_pred             EEEEEEEeCCCchhhcc-cch-----hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHS-LAP-----MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ  130 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~  130 (198)
                      .+.+.|+||||...... ...     .....++.+++|+|+......   ......+...    .+ ..+|.||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCcc
Confidence            45788999999643221 111     123468999999998654322   2222233222    23 3468899997432


Q ss_pred             CCCCHHHHHHHHHHcCCeEEEE
Q 048059          131 REVPTEEGEQFSQENGMFYIET  152 (198)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~  152 (198)
                      .    ..+.......+.|+..+
T Consensus       256 ~----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 G----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             C----THHHHHHHHHCCCEEEE
T ss_pred             H----HHHHHHHHHHCCCeEEE
Confidence            2    12334555556654433

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.65  E-value=3.1e-05  Score=53.87  Aligned_cols=22  Identities=32%  Similarity=0.711  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      +++++|++|||||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.58  E-value=4e-05  Score=53.26  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      --++|+|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999999863

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.52  E-value=5.4e-05  Score=53.52  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.++|+|++|||||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998876

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.47  E-value=6.6e-05  Score=52.42  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -.|+|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            45899999999999999999874

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.47  E-value=0.0003  Score=53.09  Aligned_cols=23  Identities=35%  Similarity=0.559  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      --++++|++|||||||++.|. ..
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            357899999999999999998 43

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.45  E-value=7.3e-05  Score=52.77  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      --++|+|++|||||||++.|.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999998874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.44  E-value=3.7e-05  Score=58.09  Aligned_cols=24  Identities=29%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -.++|+|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998643

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.41  E-value=0.00014  Score=50.08  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.|+|+|++||||||+++.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.40  E-value=9.1e-05  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|+|++|||||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999988743

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.40  E-value=9.2e-05  Score=53.22  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .--++|+|++|||||||++.|.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC
Confidence            4568899999999999999998743

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.38  E-value=0.00017  Score=51.33  Aligned_cols=86  Identities=13%  Similarity=0.062  Sum_probs=55.4

Q ss_pred             EEEEEEEeCCCc-hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059           58 TVKFDIWDTAGQ-ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE  136 (198)
Q Consensus        58 ~~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  136 (198)
                      .+.+.++|+|+. ..  ......+..+|.+|++... +..++..+...++.+....  ..++.+|.|+.|....  ....
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence            456889999876 32  2334566789999999875 4566777777777776632  3468899999995320  1134


Q ss_pred             HHHHHHHHcCCeEE
Q 048059          137 EGEQFSQENGMFYI  150 (198)
Q Consensus       137 ~~~~~~~~~~~~~~  150 (198)
                      +..+..+.++.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            45555555665543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.37  E-value=0.0001  Score=52.93  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|++|||||||++.|.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999998873

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.35  E-value=8.8e-05  Score=51.10  Aligned_cols=20  Identities=35%  Similarity=0.707  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q 048059           12 KLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~   31 (198)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999644

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.35  E-value=0.00012  Score=51.58  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..--|+|+|++|||||||++.|...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3456899999999999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.34  E-value=0.00012  Score=52.13  Aligned_cols=24  Identities=29%  Similarity=0.392  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      --|+|+|++|||||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            458899999999999999998753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.33  E-value=0.00012  Score=52.12  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .....|+|+|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999988763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.33  E-value=0.00013  Score=51.06  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999854

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.30  E-value=0.00014  Score=49.85  Aligned_cols=23  Identities=26%  Similarity=0.629  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999988763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.30  E-value=0.00016  Score=51.34  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ....|+|+|++|||||||++.|.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.29  E-value=0.00015  Score=51.21  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-.|+|+|++|||||||++.|.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.29  E-value=0.00015  Score=51.36  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..-|+|+|++|||||||++.|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999998753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.27  E-value=0.00017  Score=49.14  Aligned_cols=23  Identities=39%  Similarity=0.687  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999988754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.27  E-value=0.00016  Score=50.47  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -++++|++||||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.26  E-value=0.00014  Score=52.79  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.26  E-value=0.00016  Score=51.03  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ..|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999988744

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.26  E-value=0.00017  Score=49.65  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999886

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.25  E-value=0.00018  Score=49.24  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 048059           11 AKLVLLGDMGTGKTSLALRF   30 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l   30 (198)
                      .-|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999988

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.24  E-value=0.0002  Score=48.96  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.23  E-value=0.00017  Score=52.03  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|+.|||||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.21  E-value=0.00021  Score=50.94  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.21  E-value=0.00029  Score=50.49  Aligned_cols=20  Identities=25%  Similarity=0.612  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999988874

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.20  E-value=0.0002  Score=52.15  Aligned_cols=22  Identities=32%  Similarity=0.320  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++++|+.|||||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.20  E-value=0.00022  Score=50.69  Aligned_cols=22  Identities=45%  Similarity=0.596  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +.|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988875

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.20  E-value=0.00022  Score=50.84  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.18  E-value=0.00024  Score=51.81  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 048059           11 AKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~   31 (198)
                      -.|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999988

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.00026  Score=49.86  Aligned_cols=22  Identities=41%  Similarity=0.730  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.17  E-value=0.00025  Score=48.88  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-|++.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.17  E-value=0.00031  Score=48.75  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|++.|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.16  E-value=0.00022  Score=51.04  Aligned_cols=22  Identities=27%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999988864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.16  E-value=0.00023  Score=52.49  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      =.++|+|++|||||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999998876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.16  E-value=0.00024  Score=50.10  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|+|++||||||+++.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.15  E-value=0.00022  Score=53.06  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|+|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999888743

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.15  E-value=0.00026  Score=49.20  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.15  E-value=0.00022  Score=52.65  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|+.|||||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999988874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.15  E-value=0.00027  Score=49.19  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ...+|+|+|++||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999888753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.15  E-value=0.00022  Score=51.85  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.15  E-value=0.00023  Score=54.88  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|++|||||||++.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999999754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.14  E-value=0.00028  Score=49.76  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999998876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.13  E-value=0.00034  Score=49.28  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|+|.|.+||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.13  E-value=0.00023  Score=49.23  Aligned_cols=24  Identities=38%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988763

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.13  E-value=0.00024  Score=52.33  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|+|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999888743

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.11  E-value=0.00024  Score=52.56  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|+|++|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999888743

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.11  E-value=0.0003  Score=49.35  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999988763

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.11  E-value=0.00026  Score=51.66  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.11  E-value=0.00027  Score=51.14  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.10  E-value=0.00029  Score=49.64  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..-|+|+|++||||||+++.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999888753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.10  E-value=0.001  Score=44.25  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|++.|++|+|||++++.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCC
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            4699999999999999977654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.10  E-value=0.00027  Score=52.25  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|+.|||||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999988864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.10  E-value=0.00026  Score=51.78  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|++|||||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988774

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.09  E-value=0.00037  Score=48.59  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.09  E-value=0.00027  Score=51.45  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|+.|||||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.09  E-value=0.00028  Score=51.94  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|+.|||||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.09  E-value=0.00039  Score=48.38  Aligned_cols=21  Identities=19%  Similarity=0.290  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|.|++||||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.08  E-value=0.00032  Score=52.87  Aligned_cols=22  Identities=32%  Similarity=0.455  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      =.++|+|++|+|||||++.|.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3689999999999999998876

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.08  E-value=0.00031  Score=51.53  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.08  E-value=0.00038  Score=49.19  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +.|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.08  E-value=0.00036  Score=50.04  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|+|++||||||+++.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.08  E-value=0.00036  Score=49.17  Aligned_cols=26  Identities=27%  Similarity=0.511  Sum_probs=22.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ......|+|.|++||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.08  E-value=0.00029  Score=51.61  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999888743

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.07  E-value=0.00036  Score=49.05  Aligned_cols=21  Identities=29%  Similarity=0.708  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.07  E-value=0.00035  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.07  E-value=0.00038  Score=48.27  Aligned_cols=22  Identities=41%  Similarity=0.676  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.06  E-value=0.00022  Score=50.80  Aligned_cols=22  Identities=36%  Similarity=0.378  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998874

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.06  E-value=0.00033  Score=51.85  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.06  E-value=0.0003  Score=51.87  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999988864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.05  E-value=0.00041  Score=49.03  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|+|.|++||||||+++.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.05  E-value=0.00033  Score=53.05  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=22.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ....-|+|+|++|||||||++.|.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            44578999999999999999988763

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.05  E-value=0.00038  Score=48.13  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-++|+|++|||||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35789999999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.04  E-value=0.0004  Score=48.35  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|+|.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.04  E-value=0.00033  Score=52.23  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999888743

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.04  E-value=0.00032  Score=52.04  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988874

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.03  E-value=0.00037  Score=49.94  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999873

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.02  E-value=0.00034  Score=51.36  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|+.|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999888743

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.01  E-value=0.00045  Score=50.34  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...+|+|.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.01  E-value=0.00036  Score=47.99  Aligned_cols=21  Identities=43%  Similarity=0.748  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            599999999999999988864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.01  E-value=0.00022  Score=51.45  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=15.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH-hC
Q 048059           11 AKLVLLGDMGTGKTSLALRFI-KG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~-~~   33 (198)
                      --++|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999988 53

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.01  E-value=0.00042  Score=49.55  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999988864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.00  E-value=0.00036  Score=51.63  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|+.|||||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.99  E-value=0.00056  Score=48.42  Aligned_cols=24  Identities=17%  Similarity=0.182  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ....|+|.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999998864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.99  E-value=0.00078  Score=46.79  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.97  E-value=0.00048  Score=51.91  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -.++++|++|||||||++.|.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            357899999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.95  E-value=0.00044  Score=47.75  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|++.|++||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45799999999999999998874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.94  E-value=0.00057  Score=46.52  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988865

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.94  E-value=0.0007  Score=47.03  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=21.6

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +....|++.|.+||||||+++.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4457899999999999999998865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.94  E-value=0.00059  Score=48.28  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ...|+|+|++||||||+++.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999988763

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.94  E-value=0.002  Score=45.41  Aligned_cols=20  Identities=40%  Similarity=0.649  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      +++.|++|+|||++++.+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.94  E-value=0.00051  Score=50.73  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.94  E-value=0.00047  Score=53.20  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|+|++|||||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999998876

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.93  E-value=0.00026  Score=48.81  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+.|+|++|||||||++.|.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999988763

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.93  E-value=0.00047  Score=51.60  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...-|+|.|++||||||+++.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.93  E-value=0.00051  Score=50.39  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.93  E-value=0.00049  Score=51.11  Aligned_cols=21  Identities=38%  Similarity=0.464  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999873

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.93  E-value=0.00058  Score=49.76  Aligned_cols=23  Identities=13%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..-|+|+|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999998876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.93  E-value=0.00054  Score=49.24  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|.|++||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.91  E-value=0.00054  Score=48.96  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999988864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.91  E-value=0.00047  Score=53.35  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-+++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.89  E-value=0.00054  Score=52.82  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|+|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999888743

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.89  E-value=0.00062  Score=48.90  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.89  E-value=0.00061  Score=49.24  Aligned_cols=23  Identities=39%  Similarity=0.559  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..+|+|.|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.87  E-value=0.00074  Score=47.38  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ...|+|.|++||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            467999999999999999988764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.86  E-value=0.00055  Score=51.29  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|+.|||||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.86  E-value=0.00038  Score=46.82  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -.++++|++|+|||+|++.+.+..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999888643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.86  E-value=0.00069  Score=47.64  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ...|+|.|++||||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999988763

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.86  E-value=0.00064  Score=49.67  Aligned_cols=21  Identities=38%  Similarity=0.518  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999998863

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.84  E-value=0.00063  Score=52.41  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999988743

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.84  E-value=0.00089  Score=50.16  Aligned_cols=25  Identities=16%  Similarity=0.290  Sum_probs=21.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ....-|+|+|++|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999987764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.84  E-value=0.00039  Score=52.46  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .++|+|++|||||||++.+.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHc
Confidence            589999999999999988876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.84  E-value=0.00068  Score=48.03  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|+|.|.+||||||+++.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998874

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.83  E-value=0.00043  Score=47.83  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=16.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.82  E-value=0.00069  Score=52.34  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|+|++|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            36899999999999999888743

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.82  E-value=0.00067  Score=52.34  Aligned_cols=22  Identities=36%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++++|++|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            3689999999999999988874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.82  E-value=0.00084  Score=46.27  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.81  E-value=0.00076  Score=47.58  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..-|+|+|++|||||||++.|.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.81  E-value=0.0007  Score=52.30  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999988743

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.81  E-value=0.00084  Score=46.84  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|.|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.81  E-value=0.00074  Score=48.34  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.80  E-value=0.00067  Score=52.46  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -.++|+|++|||||||++.|.+-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47899999999999999999864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.80  E-value=0.00072  Score=52.54  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999888743

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.80  E-value=0.00075  Score=52.38  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.++|+|++||||||+++.+.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.79  E-value=0.00089  Score=46.81  Aligned_cols=23  Identities=17%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|+|.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.79  E-value=0.00074  Score=50.94  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .--|+|+|++||||||+++.|.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45789999999999999998874

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.79  E-value=0.00087  Score=46.04  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -+.|+|.+|||||||+.+|..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.78  E-value=0.00088  Score=46.61  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.78  E-value=0.00064  Score=51.92  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|++|||||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.77  E-value=0.00078  Score=52.25  Aligned_cols=22  Identities=41%  Similarity=0.377  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++++|++|||||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3689999999999999988874

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.77  E-value=0.00087  Score=45.78  Aligned_cols=21  Identities=19%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.77  E-value=0.00099  Score=50.32  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...-|+|+|++|||||||++.|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998876

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.77  E-value=0.00076  Score=52.31  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            36899999999999999988743

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.77  E-value=0.00053  Score=50.25  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .....|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.77  E-value=0.00081  Score=50.70  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .--++++|++||||||+++.|.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999998875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.77  E-value=0.0011  Score=46.48  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .....+.|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A            8 HHHHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHH
Confidence            445678999999999999999988865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.77  E-value=0.00076  Score=53.16  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|++||||||+++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.76  E-value=0.001  Score=50.50  Aligned_cols=25  Identities=12%  Similarity=0.198  Sum_probs=21.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...+-|+|+|++|||||||++.|.+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457799999999999999988764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.75  E-value=0.00084  Score=49.40  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999998875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.75  E-value=0.0009  Score=46.32  Aligned_cols=21  Identities=43%  Similarity=0.675  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999988764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.75  E-value=0.0011  Score=45.27  Aligned_cols=22  Identities=50%  Similarity=0.655  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.74  E-value=0.00034  Score=49.63  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.74  E-value=0.0011  Score=45.68  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|++.|.+||||||+++.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999988875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.73  E-value=0.001  Score=48.77  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 048059           10 QAKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~   31 (198)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999887

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.71  E-value=0.00095  Score=49.52  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999998863

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.71  E-value=0.00087  Score=54.20  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -.++|+|++||||||+++.+++-.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            359999999999999999998743

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.71  E-value=0.00091  Score=51.08  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.68  E-value=0.00063  Score=52.28  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999888743

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.67  E-value=0.0011  Score=47.52  Aligned_cols=21  Identities=48%  Similarity=0.748  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -++|+|++|+|||||+..+.+
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998875

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.67  E-value=0.0013  Score=49.62  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..-|+|+|++|||||+|...|..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            34588999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.67  E-value=0.0011  Score=45.70  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999998864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.65  E-value=0.0013  Score=48.13  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.65  E-value=0.0011  Score=51.83  Aligned_cols=22  Identities=36%  Similarity=0.667  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999988863

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.63  E-value=0.0013  Score=47.62  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..+.|+|.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.61  E-value=0.0015  Score=46.51  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.60  E-value=0.0014  Score=47.94  Aligned_cols=23  Identities=35%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..+++.|++|+|||+|++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999988763

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.60  E-value=0.0013  Score=50.89  Aligned_cols=24  Identities=25%  Similarity=0.373  Sum_probs=21.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHH
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~   31 (198)
                      ...+||+|+|.+|||||||++++.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            446899999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.60  E-value=0.0015  Score=48.69  Aligned_cols=23  Identities=39%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHH
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~   31 (198)
                      ..+.|+|.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999998886

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.59  E-value=0.0012  Score=49.34  Aligned_cols=22  Identities=14%  Similarity=0.244  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.59  E-value=0.001  Score=45.71  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.++|.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999888753

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.58  E-value=0.0046  Score=49.03  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=19.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHH
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~   31 (198)
                      .+-.=|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            345667799999999999999654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.57  E-value=0.0015  Score=46.86  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-.++|.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.57  E-value=0.0016  Score=45.77  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999888753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.56  E-value=0.0013  Score=50.67  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .--|+++|++||||||+++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            35689999999999999998875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.55  E-value=0.00063  Score=52.41  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999888743

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.54  E-value=0.0015  Score=46.38  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|++.|.+||||||+++.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999988764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.54  E-value=0.0013  Score=48.25  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.52  E-value=0.0016  Score=46.26  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -++|+|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999987

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.52  E-value=0.0017  Score=46.79  Aligned_cols=27  Identities=30%  Similarity=0.393  Sum_probs=20.3

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .....+++.|+|+|||||||+...|..
T Consensus         4 ~~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            4 HHHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -----CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccccceeeECCCCCCHHHHHHHHHH
Confidence            345578999999999999999988764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.51  E-value=0.0014  Score=47.28  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=22.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ....-|+|.|+.||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999888763

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.50  E-value=0.0016  Score=46.93  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999999873

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0015  Score=52.15  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -.++|+|+.|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999988763

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.49  E-value=0.0075  Score=45.81  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..|++.|++|+|||+|++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45899999999999999998653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.49  E-value=0.0016  Score=52.29  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .--|+|+|++|||||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999998875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.48  E-value=0.0016  Score=48.75  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.47  E-value=0.0022  Score=46.24  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ...-|+|.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3567999999999999999988753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.47  E-value=0.0019  Score=43.33  Aligned_cols=19  Identities=32%  Similarity=0.585  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 048059           13 LVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~   31 (198)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.47  E-value=0.0018  Score=49.71  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      =++.|+|++|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999998854

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.40  E-value=0.0019  Score=50.17  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998885

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.39  E-value=0.0014  Score=49.75  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|.|+.|||||||++.|.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            46789999999999999999753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.38  E-value=0.0023  Score=42.58  Aligned_cols=24  Identities=25%  Similarity=0.227  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ...|++.|++|+|||++++.+...
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            356999999999999999988753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.33  E-value=0.0019  Score=45.76  Aligned_cols=21  Identities=38%  Similarity=0.624  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.32  E-value=0.0025  Score=47.28  Aligned_cols=24  Identities=38%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999998753

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.0039  Score=44.77  Aligned_cols=24  Identities=8%  Similarity=-0.096  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ++=|++.|+++.|||+|++++.+.
T Consensus        29 kilvl~~~~~~~~~~~~~~~lf~~   52 (233)
T 3uc9_A           29 KILVLSDHPHNFLKTQFLQDLFHC   52 (233)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred             ceEEEecCcccccHHHHHHHHhcc
Confidence            344455599999999999999975

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.31  E-value=0.0034  Score=47.62  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.31  E-value=0.0024  Score=47.88  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..-+++.|+||+|||+|++.+...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456888899999999999988753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.31  E-value=0.0025  Score=47.58  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-.+++.|++|+|||++++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.30  E-value=0.0028  Score=46.29  Aligned_cols=23  Identities=39%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...+++.|++|+|||++++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.29  E-value=0.0029  Score=47.46  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=20.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ....+++.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999986654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.28  E-value=0.0026  Score=45.47  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.28  E-value=0.0024  Score=51.14  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -++|+|++|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999998875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.27  E-value=0.0033  Score=48.01  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.26  E-value=0.0028  Score=50.30  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999998753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.25  E-value=0.0025  Score=47.83  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.|++.|++|+|||+|++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346999999999999999998863

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.25  E-value=0.0026  Score=47.15  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.23  E-value=0.0037  Score=50.89  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++++|+.|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988743

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.20  E-value=0.0031  Score=45.55  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ....|+|+|++||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988774

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.20  E-value=0.0027  Score=52.21  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999988763

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.18  E-value=0.0036  Score=44.00  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.17  E-value=0.0035  Score=51.04  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++++|+.|||||||++.|.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999988743

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.16  E-value=0.003  Score=47.84  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.+++.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999998875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.16  E-value=0.0031  Score=48.83  Aligned_cols=19  Identities=37%  Similarity=0.405  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 048059           13 LVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~   31 (198)
                      .+|+|+.|||||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4589999999999999876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.15  E-value=0.0031  Score=44.44  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ...|+|+|++|+|||+|...|....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999999999987643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.15  E-value=0.0041  Score=46.61  Aligned_cols=24  Identities=33%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            357999999999999999988753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0039  Score=51.46  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|+|+.|+|||||++.|.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999988743

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.14  E-value=0.0045  Score=45.64  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ....+++.|++|+|||+|++.+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999988763

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.10  E-value=0.0042  Score=48.94  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..-|+++|++||||||+.++|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.10  E-value=0.0043  Score=51.04  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999988764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.10  E-value=0.0035  Score=47.05  Aligned_cols=86  Identities=12%  Similarity=0.043  Sum_probs=47.6

Q ss_pred             EEEEEEEeCCCchhhcc--cc--hhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHS--LA--PMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~--~~--~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      ...+.|+||+|......  +.  ...+.  ..+.+++|+|.+..  .+.+..+...+..   - ...-+|.||.|.... 
T Consensus       182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l-~~~giVltk~D~~~~-  254 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---V-PVNQYIFTKIDETTS-  254 (296)
T ss_dssp             GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---S-CCCEEEEECTTTCSC-
T ss_pred             CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---C-CCCEEEEeCCCcccc-
Confidence            34688999999754321  11  11222  36778899987643  2334433333221   1 123466699996432 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEc
Q 048059          132 EVPTEEGEQFSQENGMFYIETS  153 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~S  153 (198)
                         ...+...+...++++..++
T Consensus       255 ---~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 ---LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             ---CHHHHHHHHTCSCCCSEEC
T ss_pred             ---hhHHHHHHHHHCcCEEEEE
Confidence               2355666777788766554

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.09  E-value=0.0039  Score=43.18  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      ++|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998854

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.06  E-value=0.0038  Score=45.01  Aligned_cols=21  Identities=38%  Similarity=0.588  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.03  E-value=0.0042  Score=47.40  Aligned_cols=22  Identities=41%  Similarity=0.682  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -|+|+|++|||||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988853

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.02  E-value=0.0041  Score=46.50  Aligned_cols=23  Identities=35%  Similarity=0.680  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.0039  Score=49.18  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.|++.||||+|||+|++++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999863

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.01  E-value=0.0039  Score=47.95  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998876

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.01  E-value=0.0046  Score=51.10  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999888743

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.0045  Score=48.93  Aligned_cols=24  Identities=33%  Similarity=0.350  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.|++.||||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999863

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.98  E-value=0.0045  Score=46.98  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.|++.|++|+|||+|++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999998863

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.97  E-value=0.0052  Score=50.77  Aligned_cols=23  Identities=22%  Similarity=0.331  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|+.|+|||||++.|.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.97  E-value=0.0034  Score=48.02  Aligned_cols=20  Identities=35%  Similarity=0.675  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.97  E-value=0.0049  Score=50.18  Aligned_cols=23  Identities=30%  Similarity=0.419  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|+.|||||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988743

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.97  E-value=0.0045  Score=46.69  Aligned_cols=86  Identities=15%  Similarity=0.046  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCchhhcccc-------hhh-----hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059           59 VKFDIWDTAGQERYHSLA-------PMY-----YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSD  126 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  126 (198)
                      ..+.++||||........       ...     -...+.+++|.|.....  +.+.. ...+....  . ...+|.||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence            457899999863211100       111     12478899999986332  22221 12233221  1 3446679999


Q ss_pred             CCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059          127 LDSQREVPTEEGEQFSQENGMFYIETSA  154 (198)
Q Consensus       127 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa  154 (198)
                      ....-    -.+.......+.|+.+++.
T Consensus       261 ~~~~g----G~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTAKG----GITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCSCT----THHHHHHHHHCCCEEEEEC
T ss_pred             Cccch----HHHHHHHHHHCCCEEEEeC
Confidence            63222    2366777778888877754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.96  E-value=0.0055  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.585  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..+|+++|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999987654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.95  E-value=0.0057  Score=46.21  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-|+|+|++|||||+|...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35889999999999999998753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.95  E-value=0.0048  Score=46.79  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ...|++.|++|+|||+|++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.95  E-value=0.005  Score=46.47  Aligned_cols=23  Identities=43%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-.+++.|++|+|||+|+.++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988775

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.94  E-value=0.0061  Score=49.63  Aligned_cols=23  Identities=22%  Similarity=0.331  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .++|+|+.|||||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.0046  Score=48.90  Aligned_cols=24  Identities=38%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.|++.||||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999863

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.92  E-value=0.0045  Score=47.22  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      +++.|++|+||||+++.+.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.91  E-value=0.0042  Score=44.13  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+.|+|.|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.91  E-value=0.0047  Score=47.49  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      --+.|+|++|+|||||+..+...
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999998864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.90  E-value=0.0052  Score=47.43  Aligned_cols=22  Identities=36%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.88  E-value=0.0031  Score=52.03  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++++|++|||||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999888763

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.86  E-value=0.0064  Score=43.67  Aligned_cols=27  Identities=19%  Similarity=0.128  Sum_probs=21.5

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ......-|++.|.+||||||+++.|..
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            444567899999999999999988764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.0048  Score=50.95  Aligned_cols=22  Identities=41%  Similarity=0.620  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ++|+|+.|||||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999998754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.84  E-value=0.0057  Score=43.18  Aligned_cols=19  Identities=32%  Similarity=0.585  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 048059           13 LVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~   31 (198)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4688999999999999864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.0052  Score=48.01  Aligned_cols=24  Identities=38%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.|++.||||+|||.|++++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            356999999999999999999863

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.84  E-value=0.0027  Score=52.19  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .++++|++|||||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            678999999999999987765

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.80  E-value=0.0035  Score=46.06  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ....|+|.|..||||||+++.|..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999987764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.79  E-value=0.0061  Score=46.83  Aligned_cols=23  Identities=30%  Similarity=0.603  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.76  E-value=0.0036  Score=51.54  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .++++|++|||||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999987775

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.74  E-value=0.006  Score=46.50  Aligned_cols=21  Identities=43%  Similarity=0.616  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.74  E-value=0.0025  Score=46.86  Aligned_cols=21  Identities=43%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.71  E-value=0.008  Score=42.82  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=20.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +...-|++-|++||||||+++.|..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4456799999999999999988764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.70  E-value=0.0041  Score=50.72  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ....|+|+|++|||||||++.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            3467999999999999999988764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.70  E-value=0.0087  Score=41.14  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..-|++.|++|+||||+.-.|...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            356899999999999999988863

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.68  E-value=0.0057  Score=48.92  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-+++++|+||+|||++++.+...
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999987753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.68  E-value=0.0054  Score=47.22  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-.++|.|++|+|||++++.+..
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.68  E-value=0.0065  Score=46.76  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -.|++.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999988763

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.68  E-value=0.017  Score=40.33  Aligned_cols=85  Identities=12%  Similarity=0.023  Sum_probs=54.7

Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCCCCCCCCHH
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG--NQIVVMALAANKSDLDSQREVPTE  136 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~  136 (198)
                      +.+.++|+|+..  .......+..+|.+|++...+.. + ..+..+++.+....  .+..++.+|.|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            578899999864  33445566779999999987543 4 66666666665532  345677899999995321   223


Q ss_pred             HHHHHHHHcCCeEE
Q 048059          137 EGEQFSQENGMFYI  150 (198)
Q Consensus       137 ~~~~~~~~~~~~~~  150 (198)
                      +..++.+.++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            44555555555443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.67  E-value=0.0063  Score=49.02  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .|+++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998863

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.66  E-value=0.0084  Score=43.36  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-|++.|..||||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999998875

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.64  E-value=0.0064  Score=49.57  Aligned_cols=22  Identities=50%  Similarity=0.563  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.++++|++|+|||||++.+.+
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.62  E-value=0.0079  Score=46.32  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|++.|++|+|||+|++.+..
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.62  E-value=0.0071  Score=48.43  Aligned_cols=21  Identities=43%  Similarity=0.539  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+++|++|+|||+|++.+.+
T Consensus        51 gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-49
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-49
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-48
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-47
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	8e-47
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-46
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-45
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-43
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-43
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-43
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-42
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-42
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-41
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-41
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	6e-39
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-38
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-38
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-36
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-36
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	4e-36
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-35
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-34
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	8e-34
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-33
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-33
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-33
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	6e-33
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-33
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-32
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-32
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-31
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	7e-31
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-30
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-29
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-29
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	6e-29
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-28
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-27
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-27
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-26
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-25
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-24
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-23
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-23
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-22
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-22
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-22
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-21
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-20
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	9e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-17
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	6e-14
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	6e-13
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-10
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-07
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	8e-07
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	1e-06
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	3e-06
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-05
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	2e-05
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	9e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.001
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.001

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  156 bits (396), Expect = 1e-49
 Identities = 56/160 (35%), Positives = 92/160 (57%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+GD G GKT +  RF +  F      TIG  F  + + L    +K  IWDTAGQER
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA   ++VYDI+N  +F+     ++ ++   +  V   +  NK D++ +R
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  E GE+ + + G+ ++ETSAK   N+   F+ +A+ +
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  156 bits (394), Expect = 2e-49
 Identities = 60/160 (37%), Positives = 97/160 (60%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++L+GD G GK+ L +RF++ +F      TIG  F  + + ++   VK  IWDTAGQER
Sbjct: 4   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGA   ++VYDI++  TF    +  + +    N    + L  NKSD++  R
Sbjct: 64  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TR 122

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V  ++GE  ++E G+ +IE+SAK   N+NE+F+ +AK +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 4e-48
 Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 1/163 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPT-IGAAFFTQILSLSEATVKFDIWDTAGQE 70
           K++L+GD G GKT L +RF  G F      + +G  F  ++L +    VK  +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           R+ S+   YYR A A +++YD++N  +F+     + E+       V + L  NK D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V  E+GE+ ++E G+ ++ETSAKT  N++  F  IAK L R
Sbjct: 128 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  151 bits (383), Expect = 2e-47
 Identities = 63/186 (33%), Positives = 102/186 (54%), Gaps = 2/186 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+L+G+ G GK+ L LRF    + +    TIG  F  + + L   TVK  IWDTAGQER
Sbjct: 8   KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRG+   ++VYD+++ ++FN     +QE+ R     V+  L  NK DL  +R
Sbjct: 68  FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPER 191
            V  +  ++F+  N M ++ETSA  + N+ + F  +A+++      +   +N   +  E 
Sbjct: 128 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN--LNETTQKKED 185

Query: 192 KGFCCL 197
           KG   L
Sbjct: 186 KGNVNL 191

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 8e-47
 Identities = 65/160 (40%), Positives = 99/160 (61%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+G+ G GKT L  RF +G F   Q  TIG  F  + + ++   VK  IWDTAGQER
Sbjct: 7   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYR A A ++ YDI+  ++F    + ++E+++  +  V+  L  NK DL  +R
Sbjct: 67  FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 126

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV  +  E+FS+   M+Y+ETSAK + N+ +LF ++A RL
Sbjct: 127 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (375), Expect = 1e-46
 Identities = 67/160 (41%), Positives = 105/160 (65%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GDMG GK+ L  +F + +F      TIG  F T+I+ +S   +K  IWDTAGQER
Sbjct: 6   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + ++   YYRGAA A++VYDI+   T+N  +  + + +   N   V+ L  NK+DL++QR
Sbjct: 66  FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 125

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EE +QF++ENG+ ++E SAKT +N+ + F E AK++
Sbjct: 126 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 2e-45
 Identities = 56/160 (35%), Positives = 91/160 (56%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G+ G GK+SL LRF    F  +   TIG  F  + +S+     K  IWDTAGQER
Sbjct: 9   KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + +L P YYRGA   ++VYD++  DTF + +  + EL+    +  ++ +          R
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 128

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV   EG +F++++ M +IE SAKT   +   F E+ +++
Sbjct: 129 EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 3e-43
 Identities = 100/167 (59%), Positives = 132/167 (79%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNKI Q KLVLLG+   GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
           DTAGQERYHSLAPMYYRGA AA+VVYDI+N ++F RA   V+ELQRQ +  +V+AL+ NK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +DL ++R V  +E + ++ +N + ++ETSAKT+ N+NE+F  IAK+L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  140 bits (353), Expect = 3e-43
 Identities = 49/160 (30%), Positives = 83/160 (51%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G+   GKTS   R+    F      T+G  F  + +  ++  +K  IWDTAGQER
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y ++   YYRGA   +++YDI+N ++FN       +++        + L  NK D++ +R
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V +E G Q +   G  + E SAK   N+ + F  +   +
Sbjct: 127 VVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (352), Expect = 6e-43
 Identities = 66/163 (40%), Positives = 100/163 (61%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VL+GD G GK++L  RF + +F  + + TIG  F T+ + +   T+K  IWDTAGQER
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y  +   YYRGA  A++VYDI+   T+    + ++EL+   +  +V+ L  NKSDL   R
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV 174
            VPT+E   F+++N + +IETSA  + N+ E F  I   + R+
Sbjct: 126 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 3e-42
 Identities = 68/162 (41%), Positives = 106/162 (65%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++GD G GK+ L L+F   +F    + TIG  F  +++++    +K  IWDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGAA A++VYDI+  +TFN     +++ ++  +  +V+ L  NKSDL+S+R
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           +V  EEGE F++E+G+ ++ETSAKTA N+ E F   AK + R
Sbjct: 125 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 5e-42
 Identities = 68/160 (42%), Positives = 104/160 (65%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV LG+   GKTSL  RF+   F +  + TIG  F ++ + L + T++  +WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + SL P Y R +AAAVVVYDI+N+++F +  K + +++ +    V++ L  NK+DL  +R
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +V  EEGE+ ++E  + +IETSAK   N+ +LF  +A  L
Sbjct: 122 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 1e-41
 Identities = 66/160 (41%), Positives = 105/160 (65%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K +++G+ GTGK+ L  +FI+ +F D    TIG  F ++I+++    VK  IWDTAGQER
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + S+   YYRGAA A++VYDI++ +T+N     + + +   +Q +V+ L  NK DLD+ R
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV   E  +F+QEN + ++ETSA T +N+ E F + A+++
Sbjct: 127 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 2e-41
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 11/173 (6%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
           KL+ LGD G GKT+   R+   +F  +   T+G  F  + +          S     V  
Sbjct: 7   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66

Query: 62  DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMAL 120
            +WDTAGQER+ SL   ++R A   ++++D+++  +F      + +LQ     +   + L
Sbjct: 67  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
             NK+DL  QREV   +  + + + G+ Y ETSA T QN+ +    +   + +
Sbjct: 127 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 6e-39
 Identities = 65/160 (40%), Positives = 103/160 (64%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+VLLG+   GKTSL LR+ + +F D+   T+GA+F T+ L++    V   IWDTAGQER
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           +H+L P+YYR +  A++VYDI++ D+F +    V+EL++     + + +  NK DL+ +R
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            V  +E E +++  G  +  TSAK  + I ELF ++ KR+
Sbjct: 125 HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (323), Expect = 1e-38
 Identities = 81/163 (49%), Positives = 119/163 (73%), Gaps = 3/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLVLLG+   GK+S+ LRF+   F + +EPTIGAAF TQ ++++E TVKF+IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL---D 128
           + SLAPMYYR A AA+VVYD++   +F +A   V+EL  Q ++ +++AL  NK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            +R+V  EEGE+ ++E G+ + ETSAKT +N+N++F  I +++
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 3e-38
 Identities = 52/161 (32%), Positives = 96/161 (59%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V+LG  G GK++L ++F+ G F ++ +PTI   F+ + + +  +    +I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           + S+  +Y +     ++VY + N  +F +      Q ++ +  + V + L  NK DL+S+
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           REV + EG   ++E G  ++ETSAK+   ++ELF EI +++
Sbjct: 124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 1e-36
 Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 26/199 (13%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +   +F  +  PT+   +   ++   E      ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQED 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y  L P+ Y      +V + + +  +F    +                L   + DL    
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 132 EV------------PTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
                           E  E+ +++   + Y+E SA T + +  +F E            
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA------- 176

Query: 179 RSGINLNPETPERKGFCCL 197
                L P  P++   C L
Sbjct: 177 -----LEPPEPKKSRRCVL 190

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 4e-36
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLGD G GK+SL  R++  +F  Q   TIG  F  + L +    V   IWDTAGQER
Sbjct: 8   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI----VVMALAANKSDL 127
           + SL   +YRG+   ++ + + +  +F   +   +E     +          +  NK D+
Sbjct: 68  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127

Query: 128 DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRL 171
             +R+V TEE + + ++NG   Y ETSAK A N+   F E  +R+
Sbjct: 128 S-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (306), Expect = 4e-36
 Identities = 75/160 (46%), Positives = 106/160 (66%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ LLGD G GK+S+  RF++  F     PTIGA+F T+ +       KF IWDTAG ER
Sbjct: 6   KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           + +LAPMYYRG+AAA++VYDI+  +TF+     V+EL++ G   +V+A+A NK DL   R
Sbjct: 66  FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 125

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           EV   + + ++      ++ETSAK A NINELF EI++R+
Sbjct: 126 EVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (298), Expect = 5e-35
 Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++GD   GKT L  RF  G+F D+ E TIG  F  + + +    +K  +WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63

Query: 72  YHSL-APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDS 129
           +       YYR   A V VYD++NM +F+     ++E ++      +   L  NK DL S
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQ---NINELFYEIA 168
             +VPT+  ++F+  + M   ETSAK      ++  +F  +A
Sbjct: 124 AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  118 bits (296), Expect = 1e-34
 Identities = 49/161 (30%), Positives = 95/161 (59%), Gaps = 2/161 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++++G  G GK++L L+F+  +F +  EPT   ++  +++      V+ DI DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQED 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           Y ++   Y+R     + V+ I+ M++F       +++ R   ++ V   L  NKSDL+ +
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R+V  EE +  + +  + Y+ETSAKT  N++++F+++ + +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  116 bits (291), Expect = 8e-34
 Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 8/183 (4%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+++LGD G GKTSL  +++  +F +Q + TIGA F T+ + + +  V   IWDTAGQER
Sbjct: 4   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFN----RANKLVQELQRQGNQIVVMALAANKSDL 127
           + SL   +YRGA   V+V+D++  +TF       ++ + +   +  +     +  NK DL
Sbjct: 64  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123

Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPE 187
           ++++            +N + Y ETSAK A N+ + F  IA+   +    + + + L  E
Sbjct: 124 ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK----QETEVELYNE 179

Query: 188 TPE 190
            PE
Sbjct: 180 FPE 182

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 15/175 (8%)

Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           ++ K+V++GD   GKT+L   F K  F +   PT+    +T    +    ++  +WDT+G
Sbjct: 1   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSG 59

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
              Y ++ P+ Y  + A ++ +DIS  +T +   K  +   ++      M L   KSDL 
Sbjct: 60  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 119

Query: 129 S------------QREVPTEEGEQFSQENG-MFYIETSAKTAQN-INELFYEIAK 169
           +            Q  V  ++G   +++ G   YIE SA  ++N + ++F+    
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 174

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 17/184 (9%)

Query: 1   MA-RPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATV 59
           MA  PG  ++  K V++GD   GKT L + +    F ++  PT+    +   +++     
Sbjct: 1   MAHGPGALML--KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQY 57

Query: 60  KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMA 119
              ++DTAGQE Y  L P+ Y      ++ + + N  +F    +      ++    V   
Sbjct: 58  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL 117

Query: 120 LAANKSDLDSQRE------------VPTEEGEQFSQENG-MFYIETSAKTAQNINELFYE 166
           L   + DL    +            +  E+G++ ++E G   Y+E SA T + +  +F E
Sbjct: 118 LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 177

Query: 167 IAKR 170
               
Sbjct: 178 AIIA 181

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  114 bits (286), Expect = 3e-33
 Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +++++G    GKT++  +   G+       T        + ++    + F +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ----IVVMALAANKSDL 127
              L   Y++     + V D ++ +  N A + +  +  +       ++V A   +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            +  E+  + G    +    +   T A +   + E    ++ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 6e-33
 Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 14/174 (8%)

Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           I+ KLV++GD   GKT L +   K QF +   PT+    +   + +    V+  +WDTAG
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAG 59

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
            E Y  L P+ Y      ++ + I + D+     +      +     V + L  NK DL 
Sbjct: 60  LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 119

Query: 129 SQREV------------PTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAK 169
           +                  EEG   +   G F Y+E SAKT   + E+F    +
Sbjct: 120 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 173

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 8e-33
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++ I+  F D+ +PTI  ++  Q++   E T   DI DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           Y ++   Y R     + V+ I+N  +F   ++  ++++R   +  V M L  NK D  + 
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LAA 122

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           R V + + +  ++  G+ YIETSAKT Q + + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 52/164 (31%), Positives = 97/164 (59%), Gaps = 3/164 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV+LG  G GK++L ++F++G F ++ +PTI  ++  Q+    +     +I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQ-QCMLEILDTAGTEQ 63

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           + ++  +Y +      +VY I+   TFN    L +++ R    + V M L  NK DL+ +
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 131 REVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R V  E+G+  +++     ++E+SAK+  N+NE+FY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (279), Expect = 6e-32
 Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 16/179 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K V++GD   GKT L + +    F  +  PT+    ++  + +    V   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
           Y  L P+ Y     +++ + + +  +F           R       + L   K DL   +
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125

Query: 132 EVPTE------------EGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRLARVSPP 177
           +   +            +G   ++E G + Y+E SA T + +  +F E  + +  + PP
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV--LCPP 182

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 1e-31
 Identities = 50/163 (30%), Positives = 94/163 (57%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           +LV++G  G GK++L ++FI+  F    +PTI    +T+   + +   + DI DTAGQE 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQE-LQRQGNQIVVMALAANKSDLDSQ 130
           + ++   Y R     ++V+ +++  +F    K  ++ L+ +      M L  NK+DLD Q
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQ 125

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R+V  EEG+Q +++  + Y+E SAK   N+++ F+E+ + + +
Sbjct: 126 RQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 3e-31
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++G  G GK++L ++FI+  F            +T+I S+     + DI DTAGQE 
Sbjct: 8   KLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 66

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQ 130
           + ++   Y R     ++V+ I++  +FN   KL  ++ R        + L  NK+DL+SQ
Sbjct: 67  FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 126

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R+VP  E   F   + + Y E SAK   N++E F ++ + + +
Sbjct: 127 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 169

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 7e-31
 Identities = 46/163 (28%), Positives = 87/163 (53%), Gaps = 1/163 (0%)

Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           +  K+V++G+   GK+S+  R+ KG F    + TIG  F  + + +++  V+  +WDTAG
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
           QE + ++   YYRGA A V+V+  ++ ++F   +   +++  +   I       NK DL 
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTAL-VQNKIDLL 119

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
               +  EE E  ++   + +  TS K   N++E+F  +A++ 
Sbjct: 120 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (269), Expect = 1e-30
 Identities = 47/162 (29%), Positives = 90/162 (55%), Gaps = 3/162 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KLV++GD G GK++L ++F +  F    +PTI  ++       ++     D+ DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQ-WAILDVLDTAGQEE 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
           + ++   Y R     ++VY +++  +F   ++  Q + R +  +   M L ANK DL   
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 124

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAKRL 171
           R+V  ++G++ + +  + YIETSAK    N+++ F+++ + +
Sbjct: 125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (263), Expect = 1e-29
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATV-KFDIWDTAGQE 70
           K+++LGD G GKTSL  R++  ++  Q + TIGA F T+ +++    V    +WDTAGQE
Sbjct: 4   KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63

Query: 71  RYHSLAPMYYRGAAAAVVVYDISNMDTFN----RANKLVQELQRQGNQIVVMALAANKSD 126
           R+ SL   +YRGA   V+VYD++N  +F       ++ +        +     +  NK D
Sbjct: 64  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 127 LDSQREVPTEEGEQFSQE--NGMFYIETSAKTAQNINELFYEIAKRL 171
            +  +++ +E+  Q   +    +    TSAK A N++  F EIA+  
Sbjct: 124 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-29
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++ + G  G GK+SL LRF+KG F +   PT+   +   I           I DT G  +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS-ICTLQITDTTGSHQ 62

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI--VVMALAANKSDLDS 129
           + ++  +      A ++VY I++  +      + +++      +  + + L  NK D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
            REV + E E  ++     ++ETSAK   N+ ELF E+     R
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 166

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 6e-29
 Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 9   IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
           +Q KLVL+GD GTGKT+   R + G+F  +   T+G      +   +   +KF++WDTAG
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
           QE++  L   YY  A  A++++D+++  T+       ++L R    I ++    NK D+ 
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVL-CGNKVDIK 120

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
            ++         F ++  + Y + SAK+  N  + F  +A++L
Sbjct: 121 DRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 4/164 (2%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL + G  G GK++L +RF+  +F  + +PT+ + +  Q     E  V  +I DTAGQE 
Sbjct: 4   KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE-VVSMEILDTAGQED 62

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI-VVMALAANKSDLDSQ 130
                  + R     V+VYDI++  +F     L   L        V + L  NK+DLD  
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAKRLAR 173
           R+V TEEGE+ + E    + E SA T + NI E+FYE+ + + R
Sbjct: 122 RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 11/171 (6%)

Query: 5   GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           GNK  + ++++LG    GKT++  +   GQ      PT+G    T         VKF++W
Sbjct: 9   GNK--EMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYK----NVKFNVW 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANK-LVQELQRQGNQIVVMALAAN 123
           D  GQ++   L   YY G    + V D ++ D  + A + L + +  +  +  ++ + AN
Sbjct: 62  DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121

Query: 124 KSDL---DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           K DL       E+  + G    ++   +   + A +   + E    +    
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + ++++LG  G GKT++  R   G+    + PTIG    T    LS   +K ++WD  GQ
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVET----LSYKNLKLNVWDLGGQ 71

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR----QGNQIVVMALAANKS 125
                    YY   AA + V D ++ D  + A+K +  + +    Q   ++V A   ++ 
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 131

Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
              S  EV  E      ++     + +SA   + I E    +   +
Sbjct: 132 GALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.4 bits (246), Expect = 3e-27
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ +LG    GK+SL ++F++GQF D  +PTI   F   I    +      + DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQ-EYHLQLVDTAGQDE 64

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNR-ANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
           Y      Y       ++VY ++++ +F        + L   G   + + L  NK DL  +
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           R +  EEG+  ++     ++E+SAK  Q   ++F  I     +
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 1e-26
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 9/166 (5%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + K++++G    GKT++  +F   +              + +  +     +F +WD  GQ
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQ 69

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQE-LQRQGNQIVVMALAANKSDLD 128
           E   S    YY      +VV D ++ +  +   + + + L  +  +   + + ANK D+ 
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 129 ---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
              +  E+         +++        A T + + +    +  RL
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (236), Expect = 1e-25
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLG  G GK++LA  F   +     E       + + + +        ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL-AANKSDLDSQ 130
              L         A V+VY +++  +F +A++L  +L+R      V  +   NKSDL   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 120

Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           REV  +EG   +      +IETSA    N+  LF  + +++
Sbjct: 121 REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 6e-24
 Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +L +LGD  +GK+SL  RF+ G +  Q      +  + + + +   T    I + AG 
Sbjct: 5   ELRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGA 62

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSD--L 127
                    +         + D ++    +R +  +  L+ +G   + +AL   +     
Sbjct: 63  PDAKF--SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 120

Query: 128 DSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRL 171
            S R V          +     Y ET A    N++ +F E+A+++
Sbjct: 121 SSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 89.4 bits (220), Expect = 2e-23
 Identities = 24/162 (14%), Positives = 51/162 (31%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +L L+G   +GKT+       GQF +   PT+G              +         +
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129
             +                        + N  + L+ + Q QG  ++V+    +      
Sbjct: 62  SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 121

Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++E+  +      Q+  +     S K   NI+     + +  
Sbjct: 122 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 88.6 bits (218), Expect = 4e-23
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 9/168 (5%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +L++LG    GKT++  +F           TI       I +L     K +IWD  GQ
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR----QGNQIVVMALAANKS 125
           +   S    Y+      + V D ++        + +Q L       G  +++ A   +  
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
              S   +         + +       SA T +++      +   ++ 
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (216), Expect = 1e-22
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEATVKFDIWDTA-GQ 69
           ++VL+G+ G GK++LA  F       D     +G   + + L +   +    + D    +
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLD 128
                L     +   A ++VY I++  +F   +   +Q  + +  + + + L  NKSDL 
Sbjct: 65  GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 124

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
             REV   EG   +      +IETSA    N+ ELF  I +++
Sbjct: 125 RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 87.7 bits (216), Expect = 1e-22
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 9/166 (5%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + +++LLG    GKT+L  +           PT G    +          K ++WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASED-ISHITPTQGFNIKSVQ----SQGFKLNVWDIGGQ 70

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLD 128
            +       Y+      + V D ++   F     +L + L+ +    V + + ANK DL 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 129 SQR---EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           +     E+         ++        SA T + + +    + K +
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 9/166 (5%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + ++++LG  G GKT++  R   G+       T        + +++   +KF +WD  G 
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGL 59

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLD 128
                    YY    A + V D  + D    +   +  +  +   +  ++ + ANK D++
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 129 ---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
              +  E+    G    ++      +TSA     ++E    + + L
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.0 bits (209), Expect = 3e-21
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 43/201 (21%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + KL+LLG   +GK++   +           PT G   +         +V F + D  GQ
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQ 55

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANK-----------LVQELQRQGNQIVVM 118
                     +    + + +  +S  D     +                +     Q   +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGM--------------------------FYIET 152
            L  NK DL  ++ + +   + F + +G                           +   T
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 153 SAKTAQNINELFYEIAKRLAR 173
            A   +NI  +F  +   + +
Sbjct: 176 CATDTENIRFVFAAVKDTILQ 196

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 16/169 (9%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           KL+ LG    GKT+L       +       T+   +      L+   +KF  +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ----GNQIVVMALAANKSDL 127
              L   Y+      V + D ++ + F+ A   +  L           V++    +  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 128 DSQREV-------PTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
            S+ E+        T   ++   +  +     S        E F  +++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.3 bits (184), Expect = 9e-18
 Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 45/191 (23%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K++LLG   +GK++   +    +    Q+PT G   +          V F + D  GQ  
Sbjct: 4   KILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQRS 56

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANK-----------LVQELQRQGNQIVVMAL 120
                   +    + + +   S  D     ++               +  +    V + L
Sbjct: 57  ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 116

Query: 121 AANKSDLDSQREVPTEEGEQFSQENGM---------------------------FYIETS 153
             NK+DL  ++       + F +  G                            ++  T+
Sbjct: 117 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTT 176

Query: 154 AKTAQNINELF 164
           A   +NI  +F
Sbjct: 177 AINTENIRLVF 187

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 27/178 (15%), Positives = 47/178 (26%), Gaps = 21/178 (11%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
             KLV LG    GKT+L       +                   L+ A + F  +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-----LHPTSEELTIAGMTFTTFDLGGH 67

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISN-MDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
            +   +   Y       V + D ++         +L   +  +    V + +  NK D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 129 SQREV---------------PTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
                                     +      +     S    Q   E F  +A+ +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.2 bits (181), Expect = 3e-17
 Identities = 26/192 (13%), Positives = 52/192 (27%), Gaps = 46/192 (23%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           + KL+LLG   +GK+++  +              G          +   + F ++D  GQ
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHE-----AGTG----IVETHFTFKDLHFKMFDVGGQ 52

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRA-----------NKLVQELQRQGNQIVVM 118
                     + G  A +    +S+ D                         +      +
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGM--------------------------FYIET 152
            L  NK DL  ++   +     + +  G                           +   T
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 153 SAKTAQNINELF 164
            A   +N+  +F
Sbjct: 173 CATDTKNVQFVF 184

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.5 bits (159), Expect = 6e-14
 Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 27/192 (14%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
             +L+LLG   +GK+++  +            T G              V F ++D  GQ
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK----FQVDKVNFHMFDVGGQ 57

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLV-----------QELQRQGNQIVVM 118
                     +    A + V   S+ +   R +                   +  + + +
Sbjct: 58  RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117

Query: 119 ALAANKSDLDSQREVPTEEG-EQFSQENGMFYIETSAKTAQNINELFYEIAK-------R 170
            L  NK DL +++ +  +   E +  E   +     A      +               R
Sbjct: 118 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLR 177

Query: 171 LARVSPPKRSGI 182
           ++  S   R   
Sbjct: 178 ISTASGDGRHYC 189

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.7 bits (151), Expect = 6e-13
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 7/155 (4%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
            ++ +G   +GKT L +R + GQ+    + +I  +     ++ +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANK--LVQELQ--RQGNQIVVMALAANKSDL 127
              L   +   A A V V D +      +     L Q L           + +A NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE 162
              +    +  +Q  ++       T +     ++ 
Sbjct: 121 AMAK--SAKLIQQQLEKELNTLRVTRSAAPSTLDS 153

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 1/160 (0%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+V+ G    GK+SL      G+         G         +    +   I DTAG   
Sbjct: 3   KVVIAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 72  YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
                       A   +      +   +       +      + +    A     +   +
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
              T E    S+ NG   I  SA+T + ++ L   + + +
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 25/174 (14%), Positives = 52/174 (29%), Gaps = 7/174 (4%)

Query: 11  AKLVLLGDMGTGKTSL------ALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
           A + L+G    GK+SL      A   I    +    P +G    ++    + A +   I 
Sbjct: 2   ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 65  DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
             +  +        +       + V D ++           +        +   +L    
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV-AL 120

Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
           + +D   E   +         G+  +  SA T   +  L   +   +    PP+
Sbjct: 121 NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPE 174

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 8e-07
 Identities = 22/176 (12%), Positives = 48/176 (27%), Gaps = 21/176 (11%)

Query: 10  QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           Q  +++ G   +GKTSL              PT+ +           + V    +    +
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVK 58

Query: 70  ER---YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI----VVMALAA 122
            R      L            +V    +        + + ++           + + +A 
Sbjct: 59  LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 118

Query: 123 NKSDLDSQREVPTEEGEQFSQE---------NGMFYIETSAKTAQNINELFYEIAK 169
           NKS+L + R  P++  +    E           +  +E               +  
Sbjct: 119 NKSELFTARP-PSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 4/164 (2%)

Query: 11  AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
           A ++++G    GK++L  + +  +     E   G        ++      F + DT G  
Sbjct: 1   ATVLIVGRPNVGKSTLFNKLV-KKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVF 59

Query: 71  RYHSLAPMYYRGAAAAVVVYD---ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
                            ++ +   +  +    R      E      +   +      +  
Sbjct: 60  DNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKA 119

Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
           ++ RE   E   +         I  SA+   N++ +   I K+L
Sbjct: 120 ENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.2 bits (100), Expect = 3e-06
 Identities = 23/163 (14%), Positives = 46/163 (28%), Gaps = 7/163 (4%)

Query: 14  VLLGDMGTGKTSLALRFIKGQF-----YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
            ++G    GK++L    +  +        Q          T+            +     
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68

Query: 69  QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
                    +Y   A    VV+ +         ++LV    +     V + L  NK D  
Sbjct: 69  ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128

Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
              E   +   +   E     +  SA   + + EL  ++   +
Sbjct: 129 KYPEEAMKAYHELLPEAEPRML--SALDERQVAELKADLLALM 169

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 14/174 (8%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           K+ ++G    GK++L    I  +      P  G         +     K+   DTAG  R
Sbjct: 10  KVAIVGRPNVGKSTL-FNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 72  YHSLAPMYYRG-----------AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
              + P                 A  VV+   +      +  ++   ++R+G   VV+  
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128

Query: 121 AANKSDLDSQREVPTEE--GEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
             +      +R     +   E+    +    I TSA    NI+ +   +    A
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 182

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 27/181 (14%), Positives = 51/181 (28%), Gaps = 20/181 (11%)

Query: 11  AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP------------------TIGAAFFTQIL 52
           A ++  G    GK++L  R    +    + P                    G  F   + 
Sbjct: 1   ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60

Query: 53  SLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG 112
              +  +K +I         +    +      AA  +            +    +  R+ 
Sbjct: 61  KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120

Query: 113 N--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170
           +   IV +       ++        E+ E    E    +I  SAK   NI  L   I + 
Sbjct: 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 180

Query: 171 L 171
           +
Sbjct: 181 I 181

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.4 bits (90), Expect = 9e-05
 Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 9/171 (5%)

Query: 12  KLVLLGDMGTGKTSL--ALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
           ++ L G    GK+S   +L   K       +P         I++     V    +  A  
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL----AANKS 125
            +    A                + +   +  +    +  +    +    +     A K+
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 126 DLDSQREVPT---EEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
           D   + +         +  + +     I  S++T +  +E +  I K + R
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR 195

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 10/171 (5%)

Query: 12  KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
           ++   G    GK+S        +   +   T G      +  +++     D+      E 
Sbjct: 18  EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEV 77

Query: 72  YHSL---------APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAA 122
              +           +  R +   +VV         +   ++++        ++V+   A
Sbjct: 78  PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA 137

Query: 123 NKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
           +K    +++       E     NG       S+   Q +++L  ++    +
Sbjct: 138 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 188

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 26/190 (13%), Positives = 47/190 (24%), Gaps = 21/190 (11%)

Query: 12  KLVLLGDMGTGKTSL--ALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
            + + G+ G+GK+S    LR I  +     +  +      +             WD  G 
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117

Query: 70  ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRAN--KLVQELQRQGNQIVVMALAANKSDL 127
              +     Y          + I    T  + N   + + +     +         K D 
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFY---FVRTKVDS 174

Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPE 187
           D   E            +G        K  Q+I                 +     L+ +
Sbjct: 175 DITNE-----------ADGEPQTFDKEKVLQDIRL---NCVNTFRENGIAEPPIFLLSNK 220

Query: 188 TPERKGFCCL 197
                 F  L
Sbjct: 221 NVCHYDFPVL 230

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 22/164 (13%), Positives = 55/164 (33%), Gaps = 13/164 (7%)

Query: 12  KLVLLGDMGTGKTSL--AL----RFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
           ++V++G    GK++L   L    R I           I      + +            +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 66  TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125
           T        +         A +V++ +      +  ++ + E  +    +VV+    NK 
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI----NKV 117

Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169
           D+  +      + +  +  +    ++ SA   + + +L   I +
Sbjct: 118 DVVEKINEEEIKNKLGTDRH---MVKISALKGEGLEKLEESIYR 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.88
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.76
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.7
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.67
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.66
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.66
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.63
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.57
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.47
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.38
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.26
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.23
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.21
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.16
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.06
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.96
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.9
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.75
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.5
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.46
d1okkd2	207	GTPase domain of the signal recognition particle r	98.37
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.33
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.24
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.24
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.21
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.19
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.11
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.1
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.03
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.96
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.94
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.8
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.78
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.74
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.71
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.7
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.68
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.68
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.66
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.63
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.61
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.61
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.6
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.58
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.54
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.53
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.47
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.47
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.46
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.45
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.43
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.43
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.41
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.4
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.38
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.35
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.35
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.34
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.33
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.32
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.32
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.3
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.29
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.28
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.26
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.24
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.23
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.22
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.21
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.21
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.21
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.21
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.2
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.18
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.18
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.17
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.16
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.15
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.14
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.14
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.12
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.08
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.07
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.07
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.05
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.04
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.02
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.02
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.01
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.99
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.97
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.96
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.96
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.95
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.91
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.89
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.88
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.87
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.83
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.83
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.82
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.8
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.77
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.69
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.69
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.67
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.65
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.63
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.6
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.53
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.5
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.5
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.49
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.48
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.42
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.41
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.27
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.27
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.24
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.23
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.22
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.05
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.02
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.97
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.97
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.89
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.82
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.81
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.75
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.74
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.69
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.69
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.67
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.67
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.67
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.63
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.62
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.59
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.57
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.55
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.51
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.48
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.46
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.45
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.44
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.36
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.33
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.33
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.26
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.15
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.13
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.11
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.01
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.98
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.91
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.8
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.78
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.66
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.53
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.5
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.43
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.31
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.28
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.26
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.22
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.1
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.0
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.77
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.41
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.1
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.71
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.89
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.87
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.84
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.65
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.24
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.01
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.99
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.9
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.61
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.19
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.73
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.71
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.21
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.2
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	87.68
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.23
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.53
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.51
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.33
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	86.29
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.77
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.65
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.06
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.51
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	82.5
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	82.04
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	82.0
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	80.5
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.45

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-39  Score=224.84  Aligned_cols=165  Identities=39%  Similarity=0.709  Sum_probs=149.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+|+|.+|||||||+++|.++.+...+.++.+.+........++..+.+.+||++|++.+..+++.+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            46899999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||+++++||+.+..|+..+........|+++++||+|+...+.++.++++.+++.+++++++|||++|.||+++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999988877667789999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 048059          169 KRLAR  173 (198)
Q Consensus       169 ~~~~~  173 (198)
                      +++.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.7e-39  Score=223.59  Aligned_cols=167  Identities=29%  Similarity=0.548  Sum_probs=156.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ++-+||+|+|++|||||||+++|.++.+...+.++.+.+.....+......+.+.+|||||++.+..+++.+++++|++|
T Consensus         3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i   82 (169)
T d3raba_           3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   82 (169)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred             CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35699999999999999999999999988888999998888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||+++++++..+..|+..+........|+++++||+|+...+.+..++++.+++.++++++++||++|.|++++|++|
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_          83 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHH
Confidence            99999999999999999988888777889999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 048059          168 AKRLARV  174 (198)
Q Consensus       168 ~~~~~~~  174 (198)
                      ++.+.++
T Consensus       163 ~~~i~ek  169 (169)
T d3raba_         163 VDVICEK  169 (169)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhhC
Confidence            9988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-39  Score=223.34  Aligned_cols=163  Identities=29%  Similarity=0.517  Sum_probs=153.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||+++|+++.+...+.+|.+.+.........+..+.+.+||++|++.+..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999889999999988888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      ||++++++++.+..|++.+.... ++.|+++|+||+|+.+.+.+..++++.+++.++++++++||++|.||+++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999988764 56899999999999888889999999999999999999999999999999999999


Q ss_pred             HHHh
Q 048059          170 RLAR  173 (198)
Q Consensus       170 ~~~~  173 (198)
                      ++++
T Consensus       161 ~~lq  164 (164)
T d1z2aa1         161 KHLQ  164 (164)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-39  Score=222.96  Aligned_cols=167  Identities=39%  Similarity=0.675  Sum_probs=156.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+.+..+.+.+|||+|++.+..+++.+++++++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            35699999999999999999999999998888899999988899999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++.+++.+..|+..+.+......|+++|+||+|+...+.+..++++.+++.+++++++|||++|.||+++|.+|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHH
Confidence            99999999999999999999888777789999999999998888888999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 048059          168 AKRLARV  174 (198)
Q Consensus       168 ~~~~~~~  174 (198)
                      ++++.+.
T Consensus       163 ~~~l~~~  169 (171)
T d2ew1a1         163 ACRLISE  169 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-38  Score=222.39  Aligned_cols=170  Identities=32%  Similarity=0.542  Sum_probs=153.9

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ++...+||+|+|++|||||||+++|+++.+...+.++.. +.....+.+++..+.+.+||++|++++...+..+++++|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            445679999999999999999999999998888777754 4456778889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +|+|||++++.+++.+..|+..+.+. ...+.|++||+||+|+...+.+..+++..+++.++++|++|||++|.||+++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999988764 44678999999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCC
Q 048059          165 YEIAKRLARVSP  176 (198)
Q Consensus       165 ~~l~~~~~~~~~  176 (198)
                      ++|++.+.+.+.
T Consensus       161 ~~l~~~i~k~~~  172 (173)
T d2fn4a1         161 EQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999887654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-38  Score=223.83  Aligned_cols=166  Identities=22%  Similarity=0.355  Sum_probs=145.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+++|++|||||||+++|..+.+...+.+|.+... .......+..+.+.+||++|++++..++..++.++|+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            3579999999999999999999999999888889888554 555667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC------------CCCCCCHHHHHHHHHHcC-CeEEEEcc
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD------------SQREVPTEEGEQFSQENG-MFYIETSA  154 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa  154 (198)
                      +|||+++++||+.+..|+.........+.|+++|+||+|+.            ..+.+..++++++++.++ ++|++|||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            99999999999999765555544445779999999999984            345688999999999865 79999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q 048059          155 KTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ++|.||+++|+.+++.+.+.
T Consensus       160 k~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999887654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.5e-38  Score=218.14  Aligned_cols=164  Identities=46%  Similarity=0.783  Sum_probs=155.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ++.+||+|+|.+|||||||+++|..+.+...+.++.+................+.+||++|++.+..++..++.+++++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            57899999999999999999999999999999999999988888888889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++++++.+..|+..+........|+++|+||+|+...+.+..++++.+++.++++|+++||++|.||+++|.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999988888877889999999999998888999999999999999999999999999999999999


Q ss_pred             HHHH
Q 048059          168 AKRL  171 (198)
Q Consensus       168 ~~~~  171 (198)
                      ++++
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9876

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-38  Score=222.94  Aligned_cols=172  Identities=34%  Similarity=0.607  Sum_probs=161.1

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      -+.-+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+.+..+.+.+|||+|++++..+|..++++++++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            45679999999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      |+|||+++++++..+..|+..+........|+++++||+|+.....+..++...++...+++++++||++|.||+++|++
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~  162 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  162 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHH
Confidence            99999999999999999999888777788999999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC
Q 048059          167 IAKRLARVSPPK  178 (198)
Q Consensus       167 l~~~~~~~~~~~  178 (198)
                      |++.+.+.....
T Consensus       163 l~~~i~~~~~~~  174 (194)
T d2bcgy1         163 MARQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHHHCCHH
T ss_pred             HHHHHHHHhhhc
Confidence            999998877654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.2e-38  Score=217.39  Aligned_cols=166  Identities=28%  Similarity=0.516  Sum_probs=151.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      .+.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+..+++.+++++|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            3579999999999999999999999998888888877554 556678889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC-CHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFY  165 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~  165 (198)
                      +|||++++++|+.+..|+..+.+. .....|+++++||+|+...+.+..+++.+++++++++|+++||+++. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            999999999999999999998765 34678999999999999888999999999999999999999999986 9999999


Q ss_pred             HHHHHHHhh
Q 048059          166 EIAKRLARV  174 (198)
Q Consensus       166 ~l~~~~~~~  174 (198)
                      .|++.+.++
T Consensus       161 ~l~~~i~~~  169 (169)
T d1x1ra1         161 DLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999988763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-38  Score=217.71  Aligned_cols=163  Identities=41%  Similarity=0.724  Sum_probs=154.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      .-+||+|+|++|||||||+++|+++.+...+.++.+.++......+++..+.+.+||++|++.+..++..+++++|++|+
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            46899999999999999999999999998888888888888889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||+++.++++.+..|+..+........|+++++||+|+...+.+..+++..+++.+++++++|||++|.||+++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988888888999999999999999999999999999999999


Q ss_pred             HHH
Q 048059          169 KRL  171 (198)
Q Consensus       169 ~~~  171 (198)
                      +++
T Consensus       163 ~~i  165 (166)
T d1z0fa1         163 KKI  165 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-38  Score=218.15  Aligned_cols=162  Identities=42%  Similarity=0.727  Sum_probs=153.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+|+|.+|||||||+++|+++.+...+.++.+..........++..+.+.+||++|++.+...+..++.+++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999998888888888899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR  170 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  170 (198)
                      |.+++.+++.+..|+..+........|+++|+||+|+.+.+.+..+++..+++.++++|++|||++|.||+++|.+|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888767789999999999998888888999999999999999999999999999999999987


Q ss_pred             HH
Q 048059          171 LA  172 (198)
Q Consensus       171 ~~  172 (198)
                      +.
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            64

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-38  Score=218.74  Aligned_cols=164  Identities=27%  Similarity=0.493  Sum_probs=151.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      .+.+||+|+|++|||||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+||++|.+.+..++..++.++|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4568999999999999999999999998888889988775 566788999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      +|||++++++++.+..|+..+.+. ...+.|+++|+||+|+...+.++.++++.++++++++|++|||++|.||+++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999999988775 3467899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048059          167 IAKRLA  172 (198)
Q Consensus       167 l~~~~~  172 (198)
                      |+..+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998775

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=4.4e-38  Score=218.84  Aligned_cols=165  Identities=30%  Similarity=0.576  Sum_probs=148.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      +-+||+|+|++|||||||+++|+.+.+...+.+|.+.++ ...+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            458999999999999999999999999888999988776 4566788999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |||++++++++.+..|+..+.+. ...+.|+++|+||+|+...+.+..++++.+++.++++++++||++|.||+++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999988775 34678999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 048059          168 AKRLARV  174 (198)
Q Consensus       168 ~~~~~~~  174 (198)
                      ++++..+
T Consensus       162 ~~~i~~r  168 (168)
T d1u8za_         162 MREIRAR  168 (168)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHCc
Confidence            9988653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-38  Score=218.91  Aligned_cols=163  Identities=26%  Similarity=0.350  Sum_probs=133.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+|+|++|||||||+++|.+..+. ...++.+.. ....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEE-EEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeee-ecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            79999999999999999999987643 333444433 4566778899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      |++++++++.+..|+..+.... ....|+++|+||+|+...+++...+++.+++.++++|+++||++|.|++++|.+|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999999999987754 466899999999999888889999999999999999999999999999999999999


Q ss_pred             HHHhhC
Q 048059          170 RLARVS  175 (198)
Q Consensus       170 ~~~~~~  175 (198)
                      .+..+.
T Consensus       160 ~i~~~~  165 (168)
T d2gjsa1         160 QIRLRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-38  Score=217.70  Aligned_cols=167  Identities=59%  Similarity=0.942  Sum_probs=156.9

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ....+||+|+|.+|||||||+++|+++.+...+.++.+..............+.+.+||++|++.+..+++.++++++++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   82 (170)
T d1r2qa_           3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             ceeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceE
Confidence            34579999999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      +++||.++.++++.+..|+..+.+...++.|+++|+||+|+...+.++.++++.+++.++++++++||++|.||+++|.+
T Consensus        83 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~  162 (170)
T d1r2qa_          83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999999998877788999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 048059          167 IAKRLAR  173 (198)
Q Consensus       167 l~~~~~~  173 (198)
                      |++.+.+
T Consensus       163 l~~~i~~  169 (170)
T d1r2qa_         163 IAKKLPK  169 (170)
T ss_dssp             HHHTSCC
T ss_pred             HHHHHhh
Confidence            9886643

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=218.94  Aligned_cols=170  Identities=24%  Similarity=0.387  Sum_probs=147.7

Q ss_pred             CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhh
Q 048059            1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYY   80 (198)
Q Consensus         1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   80 (198)
                      |+.. +....+||+|+|.+|||||||+++|+.+.+...+.+|.+.. ....+...+..+.+.+||++|++.+..++..++
T Consensus         1 m~~~-~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~-~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~   78 (185)
T d2atxa1           1 MAHG-PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY   78 (185)
T ss_dssp             CSSC-CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred             CCCC-CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee-eeEEEeeCCceEEeecccccccchhhhhhhhcc
Confidence            5555 56778999999999999999999999999888888888754 456667888899999999999999999999999


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-C
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENG-M  147 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~  147 (198)
                      .++|++++|||++++++|+.+..|+....+....+.|+++|+||+|+.+            .+.++.+++.++++.++ +
T Consensus        79 ~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~  158 (185)
T d2atxa1          79 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  158 (185)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             cccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCC
Confidence            9999999999999999999876544444443356889999999999853            46788999999999887 6


Q ss_pred             eEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          148 FYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       148 ~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      +|++|||++|.||+++|+.++++++
T Consensus       159 ~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         159 CYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999999998874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-37  Score=215.32  Aligned_cols=170  Identities=39%  Similarity=0.663  Sum_probs=154.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ++-+||+|+|++|||||||+++|+++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++.+++++|
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            35689999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||.+++++++.+..|+..+......+.|+++|+||+|+.+.+....+....+...++++++++||++|.|++++|++|
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999998887889999999999998877788888899999999999999999999999999999


Q ss_pred             HHHHHhhCCC
Q 048059          168 AKRLARVSPP  177 (198)
Q Consensus       168 ~~~~~~~~~~  177 (198)
                      +..+.+...+
T Consensus       162 ~~~i~~~~~~  171 (175)
T d2f9la1         162 LTEIYRIVSQ  171 (175)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9998765543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-37  Score=214.67  Aligned_cols=167  Identities=41%  Similarity=0.711  Sum_probs=151.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      +-+||+|+|++|||||||+++++++.+...+.++.+..............+.+.+||++|++.+..+++.++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            35899999999999999999999999888888888888888888888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA  168 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  168 (198)
                      |||++++++++.+..|+..+......+.|++||+||+|+...+....+++..+++.++++++++||++|.||+++|.+|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988888889999999999999999999999999999999999


Q ss_pred             HHHHhhC
Q 048059          169 KRLARVS  175 (198)
Q Consensus       169 ~~~~~~~  175 (198)
                      +.+.++.
T Consensus       162 ~~i~~~~  168 (173)
T d2a5ja1         162 KEIYRKI  168 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-37  Score=215.88  Aligned_cols=168  Identities=39%  Similarity=0.666  Sum_probs=157.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+|+|.+|||||||+++|..+.+...+.++.+.......+..+.....+.+||++|++++..+++.++.+++++|
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            45699999999999999999999999998889999988888888888899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||.+++++++.+..|+..+......+.|+++++||+|+....+...+.+..+++.++++++++||++|.|++++|.+|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l  162 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            99999999999999999999988877889999999999998888888899999999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 048059          168 AKRLARVS  175 (198)
Q Consensus       168 ~~~~~~~~  175 (198)
                      ++.+.++.
T Consensus       163 ~~~i~~~~  170 (174)
T d2bmea1         163 ARKILNKI  170 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988664

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-38  Score=218.64  Aligned_cols=161  Identities=27%  Similarity=0.468  Sum_probs=145.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+|+|.+|||||||+++|+++.+...+.+|.+..+ ......++..+.+.+||++|.+.+...+..++.++|++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            58999999999999999999999998888889988665 44567888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQG--NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      ||++++++++.+..|+..+....  ....|+++|+||+|+...+++..++++.+++.++++++++||++|.||+++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999998886642  3678999999999998888899999999999999999999999999999999999


Q ss_pred             HHHH
Q 048059          168 AKRL  171 (198)
Q Consensus       168 ~~~~  171 (198)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-37  Score=213.85  Aligned_cols=166  Identities=30%  Similarity=0.550  Sum_probs=146.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+|+|.+|||||||++++.++.+...+.++.+. .....+.+++..+.+.+||++|.+.+...++.++.++|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE-EEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccc-ceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            3589999999999999999999999988888888764 446667788999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      |||.+++++++.+..|+..+... .....|++||+||+|+...+.+..+++.++++.++++|++|||++|.||+++|.+|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999877664 34678999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHhhC
Q 048059          168 AKRLARVS  175 (198)
Q Consensus       168 ~~~~~~~~  175 (198)
                      ++.+.+.+
T Consensus       163 ~~~i~k~~  170 (171)
T d2erya1         163 VRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99886554

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-37  Score=216.50  Aligned_cols=167  Identities=34%  Similarity=0.627  Sum_probs=127.3

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +.-+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+..+++.+++++|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            45689999999999999999999998888888888888888889999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++.+++.+..|+..+........|+++|+||.|+...+....+++..++...++++++|||++|.||+++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l  163 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  163 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988777889999999999998888888888999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 048059          168 AKRLARV  174 (198)
Q Consensus       168 ~~~~~~~  174 (198)
                      ++.+.++
T Consensus       164 ~~~i~~k  170 (173)
T d2fu5c1         164 ARDIKAK  170 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=213.44  Aligned_cols=163  Identities=29%  Similarity=0.434  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      +.||+|+|++|||||||+++|..+.+...+.+|.+.. ........+..+.+.+||++|++.+...++.+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-ccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            5899999999999999999999999988888887744 456667888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIETSAKT  156 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (198)
                      ||+++++||+.+..|+..+.....++.|++|++||+|+..            .+.+..++++.+++.++. +|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999987665555554457799999999999853            356788999999999885 899999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 048059          157 AQNINELFYEIAKRLAR  173 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~  173 (198)
                      |.||+++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-37  Score=214.17  Aligned_cols=164  Identities=31%  Similarity=0.583  Sum_probs=149.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ++.+||+++|++|||||||+++|+++.+...+.++.+.. ......+++..+.+.+||++|++.+...+..+++++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeee-eeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            357999999999999999999999999888888887744 4666778889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      +|||++++++++.+..|+..+.... ..+.|++||+||+|+...+.+..+++..+++.++++++++||++|.|++++|.+
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            9999999999999999998887743 467899999999999888888899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048059          167 IAKRLA  172 (198)
Q Consensus       167 l~~~~~  172 (198)
                      |++++.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-37  Score=212.83  Aligned_cols=164  Identities=30%  Similarity=0.602  Sum_probs=149.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+...++.+++++|++|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            3579999999999999999999999999988888888665 455678889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      +|||++++++++.+..|+..+.+. ..+..|+++|+||+|+...+....+++..++++ .+++++++||++|.||+++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999999999999999999988764 446789999999999988888889999999987 478999999999999999999


Q ss_pred             HHHHHHH
Q 048059          166 EIAKRLA  172 (198)
Q Consensus       166 ~l~~~~~  172 (198)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-38  Score=218.12  Aligned_cols=163  Identities=29%  Similarity=0.537  Sum_probs=144.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +.++||+++|++|||||||+++|+.+.+...+.+|.+.++....+..++..+.+.+||++|++.+..+++.+++++++++
T Consensus         1 ~~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   80 (170)
T d1i2ma_           1 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   80 (170)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchh
Confidence            35799999999999999999999999988888899999988888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI  167 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  167 (198)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+...+..  ++...++...+++|+++||++|.|++++|.+|
T Consensus        81 lv~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  157 (170)
T d1i2ma_          81 IMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  157 (170)
T ss_dssp             EEEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHH
T ss_pred             hccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887764 57899999999999765543  34567888899999999999999999999999


Q ss_pred             HHHHHh
Q 048059          168 AKRLAR  173 (198)
Q Consensus       168 ~~~~~~  173 (198)
                      ++.+..
T Consensus       158 ~~~l~~  163 (170)
T d1i2ma_         158 ARKLIG  163 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHcc
Confidence            999974

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=209.79  Aligned_cols=165  Identities=38%  Similarity=0.634  Sum_probs=144.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      +..+||+|+|+++||||||+++++++.+... ..++.+.+.....+...+..+.+.+|||+|++.+..++..+++++|++
T Consensus         4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~   83 (170)
T d2g6ba1           4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   83 (170)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence            4579999999999999999999999887544 456678888888888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      ++|||++++++++.+..|+..+........|+++++||.|+.....+..+++..+++.++++++++||++|.||+++|.+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  163 (170)
T d2g6ba1          84 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  163 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999988888877778899999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048059          167 IAKRLA  172 (198)
Q Consensus       167 l~~~~~  172 (198)
                      |++.+.
T Consensus       164 l~~~i~  169 (170)
T d2g6ba1         164 IAKELK  169 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHcC
Confidence            999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-36  Score=211.63  Aligned_cols=163  Identities=50%  Similarity=0.868  Sum_probs=151.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+||++|++.+..+++.++.++|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC---CCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD---SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      |||++++.+++.+..|+..+........|+++++||+|+.   ..+.+..++++++++.++++|+++||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            9999999999999999988888777888999999999984   3478889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048059          166 EIAKRL  171 (198)
Q Consensus       166 ~l~~~~  171 (198)
                      .|++++
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            988654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-37  Score=212.53  Aligned_cols=163  Identities=34%  Similarity=0.539  Sum_probs=144.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||+++|.++.+...+.||.+.++... +..++..+.+.+||++|++.+. ....++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            58999999999999999999999999889999998876444 4567888999999999998764 556788999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC-CHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEI  167 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l  167 (198)
                      ||++++++++.+..|+...... ...+.|+++|+||+|+...+.++.++++.++++++++|+++||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            9999999999999887665543 34678999999999998888999999999999999999999999998 599999999


Q ss_pred             HHHHHhh
Q 048059          168 AKRLARV  174 (198)
Q Consensus       168 ~~~~~~~  174 (198)
                      ++.+.++
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-36  Score=208.65  Aligned_cols=164  Identities=37%  Similarity=0.686  Sum_probs=146.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      -+||+++|.+|||||||+++|+++.+...+.++.+.++....+.+.+..+.+.+|||||++.+..+++.++++++++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK  169 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  169 (198)
                      ||.+++.+++.+..|+..+........|++++++|.|+. .+....+++..+++.+++++++|||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            999999999999999998888877888999999999975 4556688999999999999999999999999999999999


Q ss_pred             HHHhh
Q 048059          170 RLARV  174 (198)
Q Consensus       170 ~~~~~  174 (198)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=207.87  Aligned_cols=164  Identities=32%  Similarity=0.577  Sum_probs=148.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ++.+||+|+|++|||||||+++|+++.+...+.++.+..+.. .+...+..+.+.+||++|.+.+...++.++.++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            357999999999999999999999999988888888877644 4567788899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      +|||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+. .+.+..++++.+++.++++++++||++|.||+++|.+
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999999988753 4678999999999985 5567789999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 048059          167 IAKRLAR  173 (198)
Q Consensus       167 l~~~~~~  173 (198)
                      |++++.+
T Consensus       159 i~~~i~~  165 (166)
T d1ctqa_         159 LVREIRQ  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-37  Score=216.10  Aligned_cols=168  Identities=29%  Similarity=0.490  Sum_probs=149.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC----------cEEEEEEEeCCCchhhcccch
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE----------ATVKFDIWDTAGQERYHSLAP   77 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~D~~g~~~~~~~~~   77 (198)
                      +..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+.+          ..+.+.+||++|++.+..++.
T Consensus         3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~   82 (186)
T d2f7sa1           3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT   82 (186)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence            4569999999999999999999999988888878877776666655443          346789999999999999999


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT  156 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  156 (198)
                      .+++++|++|+|||++++.+++.+..|+..+... .....|+++|+||+|+...+.+..+++.++++.++++++++||++
T Consensus        83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~  162 (186)
T d2f7sa1          83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  162 (186)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCC
Confidence            9999999999999999999999999998877654 336688999999999998889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhC
Q 048059          157 AQNINELFYEIAKRLARVS  175 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~~  175 (198)
                      |.||+++|++|++.+.++.
T Consensus       163 ~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         163 GQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=207.81  Aligned_cols=166  Identities=23%  Similarity=0.380  Sum_probs=143.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      +..+||+|+|.+|||||||+++|+.+.+...+.+|.+.. ....+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec-eeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            567999999999999999999999999998888988755 4556678889999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEEcc
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENG-MFYIETSA  154 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa  154 (198)
                      +|||++++++|+.+..|+.........+.|++||+||+|+..            .......++..+++.++ ++|++|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999997644444443346789999999999743            34567788899998887 79999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhh
Q 048059          155 KTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       155 ~~~~~i~~~~~~l~~~~~~~  174 (198)
                      ++|.||+++|++|++.++..
T Consensus       162 k~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCcCHHHHHHHHHHHHcCC
Confidence            99999999999999988643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-35  Score=205.16  Aligned_cols=166  Identities=37%  Similarity=0.670  Sum_probs=152.6

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      .+.+||+|+|.+|||||||+++|.++.+...+.++.+.......+.+++..+.+.+|||+|++++..+++.++.++|++|
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999999888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE  166 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  166 (198)
                      +|||++++.+++.+..|+..+.... ....|+++++||.|.. .+.+..++++.+++.++++++++||++|.|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999887653 3568999999999964 5678889999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 048059          167 IAKRLARV  174 (198)
Q Consensus       167 l~~~~~~~  174 (198)
                      |++.+.+.
T Consensus       164 l~~~l~~~  171 (177)
T d1x3sa1         164 LVEKIIQT  171 (177)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHccC
Confidence            99998865

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=206.36  Aligned_cols=164  Identities=26%  Similarity=0.366  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCC---chhhcccchhhhcCCCe
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAG---QERYHSLAPMYYRGAAA   85 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g---~~~~~~~~~~~~~~~d~   85 (198)
                      -+||+++|++|||||||+++|.+..+.. ...++.+.+...+.+.+++..+.+.+||+++   ++++  ++..+++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            5899999999999999999999876543 3446667777788888899999999999764   4544  56778999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      +|+|||++++++++.+..|+..+... ...+.|+++|+||+|+...+++..+++++++..++++|+++||++|.|++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            99999999999999999999888764 34679999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhC
Q 048059          165 YEIAKRLARVS  175 (198)
Q Consensus       165 ~~l~~~~~~~~  175 (198)
                      .+|++.+..+.
T Consensus       161 ~~l~~~i~~rr  171 (172)
T d2g3ya1         161 EGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHcc
Confidence            99999987664

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=201.18  Aligned_cols=166  Identities=34%  Similarity=0.562  Sum_probs=146.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA   86 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   86 (198)
                      ..+-+||+|+|++|||||||+++|+++.+...+.++.+...........+..+.+.+||++|...+...+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            35568999999999999999999999999988999999888888888899999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHH
Q 048059           87 VVVYDISNMDTFNRANKLVQELQRQG----NQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAKTAQNIN  161 (198)
Q Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  161 (198)
                      +++||.+++.+++.+..|+..+....    ....|+++|+||+|+. ++.+..+++++++++. +++|+++||++|.||+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHH
Confidence            99999999999999999998876632    3568999999999985 4678889999999886 5799999999999999


Q ss_pred             HHHHHHHHHHHh
Q 048059          162 ELFYEIAKRLAR  173 (198)
Q Consensus       162 ~~~~~l~~~~~~  173 (198)
                      ++|++|++.++.
T Consensus       162 e~f~~l~~~il~  173 (174)
T d1wmsa_         162 AAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.9e-35  Score=201.15  Aligned_cols=158  Identities=35%  Similarity=0.624  Sum_probs=144.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-cchhhhcCCCeEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-LAPMYYRGAAAAVV   88 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~   88 (198)
                      -+||+++|++|||||||+++|+.+.+...+.++.+.........+......+.+||++|...+.. .++.++.++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            48999999999999999999999999999999999888888888999999999999999876654 57788999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC---CCCHHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT---AQNINELF  164 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~  164 (198)
                      |||++++++++.+..|+..+.... ..+.|++||+||+|+...+.++.++++.+++.+++++++|||++   ++||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999999999999987753 46789999999999988888999999999999999999999997   56999999


Q ss_pred             HHH
Q 048059          165 YEI  167 (198)
Q Consensus       165 ~~l  167 (198)
                      .+|
T Consensus       162 ~~l  164 (165)
T d1z06a1         162 MTL  164 (165)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            987

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-35  Score=204.71  Aligned_cols=163  Identities=26%  Similarity=0.435  Sum_probs=142.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      ++||+++|.+|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++.+...++.+++++|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-cccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            58999999999999999999999999888888876544 45567788999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC------------CCCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059           90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD------------SQREVPTEEGEQFSQENGM-FYIETSAKT  156 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  156 (198)
                      ||+++++||+.+..|+.........+.|+++||||+|+.            ..+.++.+++..+++..+. +|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999998766555444445689999999999985            2467889999999998874 899999999


Q ss_pred             CC-CHHHHHHHHHHHHHh
Q 048059          157 AQ-NINELFYEIAKRLAR  173 (198)
Q Consensus       157 ~~-~i~~~~~~l~~~~~~  173 (198)
                      |. +++++|+.++..++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 499999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-35  Score=204.69  Aligned_cols=166  Identities=33%  Similarity=0.579  Sum_probs=132.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      -+||+++|++|||||||+++|+++.+...+.++.+........... .....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            3899999999999999999999999888888887776666555444 445678999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCCCC-CCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQRQ----GNQIVVMALAANKSDLDSQ-REVPTEEGEQFSQENG-MFYIETSAKTAQNINE  162 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  162 (198)
                      |||.+++.+++.+..|+..+...    .....|+++++||+|+.+. +.+..++++++++.++ ++++++||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            99999999999999999988763    2357899999999999754 4477888999999885 7999999999999999


Q ss_pred             HHHHHHHHHHhhC
Q 048059          163 LFYEIAKRLARVS  175 (198)
Q Consensus       163 ~~~~l~~~~~~~~  175 (198)
                      +|++|++.+.+++
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999888764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-34  Score=204.04  Aligned_cols=165  Identities=36%  Similarity=0.614  Sum_probs=148.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+|+|.+|||||||+++|+++.+...+.+|.+.+.........+..+.+.+||++|...+...+..++..+++++++|
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCHHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQG----NQIVVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFY  165 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~  165 (198)
                      |.+++.+++.+..|+..+....    ....|+++|+||+|+.. +.+..++...++.. .++++++|||++|.||+++|+
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            9999999999999998887642    24679999999999865 45667777777654 578999999999999999999


Q ss_pred             HHHHHHHhhCC
Q 048059          166 EIAKRLARVSP  176 (198)
Q Consensus       166 ~l~~~~~~~~~  176 (198)
                      +|++.+.++..
T Consensus       162 ~l~~~i~~~~~  172 (184)
T d1vg8a_         162 TIARNALKQET  172 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhccc
Confidence            99998877543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-32  Score=189.40  Aligned_cols=162  Identities=23%  Similarity=0.372  Sum_probs=135.5

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      .+.+||+++|++|||||||++++.++.+.. ..++.+..+ ...+.+++..+.+.+||++|+..+     .+++.+|++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            357999999999999999999999988753 445555444 566788999999999999998754     4788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCC--CCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ---GNQIVVMALAANKSDLD--SQREVPTEEGEQFSQE-NGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||+++++||+.+..|+..+...   .....|+++|+||.|+.  ..+.+..++++.++.. .+++|++|||++|.|++
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            999999999999999998888654   23567999999998874  4567788888888765 57899999999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 048059          162 ELFYEIAKRLARVSP  176 (198)
Q Consensus       162 ~~~~~l~~~~~~~~~  176 (198)
                      ++|..+++.+....+
T Consensus       156 ~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         156 RVFQEVAQKVVTLRK  170 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999998877653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=193.91  Aligned_cols=155  Identities=24%  Similarity=0.360  Sum_probs=127.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||+++|.++.+...+.+|.+.++..  +..  ..+.+.+||+||++.+...+..++.+++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eee--eeEEEEEeeccccccccccccccccccchhhcc
Confidence            6899999999999999999999999888888888866533  333  457789999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEccCCCCCHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQF-----SQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      ||+++.++++....|+..+... ..++.|++|++||.|+.....  ..+..+.     +...+++++++||++|.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            9999999999998887777554 346789999999999864332  2222222     2234668999999999999999


Q ss_pred             HHHHHHH
Q 048059          164 FYEIAKR  170 (198)
Q Consensus       164 ~~~l~~~  170 (198)
                      |+||++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=6.2e-32  Score=186.94  Aligned_cols=157  Identities=20%  Similarity=0.270  Sum_probs=124.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|++|||||||+++|.+..+ ....+|.+....  .  +....+.+.+||++|++.++..+..++..+++++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~--~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK--T--LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEE--E--EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeee--e--ccccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            58999999999999999999988764 456677665432  2  334457889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHH
Q 048059           90 YDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        90 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      ||.++..++.....++..+.. ....+.|++||+||+|+......  ++.....     ...++++++|||++|+|++++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            999999999888666555443 33467899999999998654443  2322221     123567999999999999999


Q ss_pred             HHHHHHHHHh
Q 048059          164 FYEIAKRLAR  173 (198)
Q Consensus       164 ~~~l~~~~~~  173 (198)
                      |+||++++..
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=4.1e-32  Score=189.69  Aligned_cols=159  Identities=20%  Similarity=0.269  Sum_probs=123.7

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAA   84 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   84 (198)
                      .+.+..+||+++|++|||||||+++|.++.+.. ..++.+.+.  ..+..  ..+.+.+||++|++.+...+..++..+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~--~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNI--KSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEE--EEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeeeE--EEecc--CCeeEeEeeccccccchhHHHHHhhccc
Confidence            345667999999999999999999999877642 234444432  33333  3477899999999999999999999999


Q ss_pred             eEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEccCCCC
Q 048059           85 AAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQF-----SQENGMFYIETSAKTAQ  158 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~  158 (198)
                      ++|+|||+++..+++.+..|+..+... ...+.|++|++||+|+.....  .....+.     +...++++++|||++|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            999999999999999998777666543 335789999999999965433  2222222     22345689999999999


Q ss_pred             CHHHHHHHHHHH
Q 048059          159 NINELFYEIAKR  170 (198)
Q Consensus       159 ~i~~~~~~l~~~  170 (198)
                      |++++|+||++.
T Consensus       164 gv~e~~~~l~~~  175 (176)
T d1fzqa_         164 GVQDGMNWVCKN  175 (176)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CHHHHHHHHHhc
Confidence            999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=9.7e-33  Score=193.99  Aligned_cols=163  Identities=23%  Similarity=0.315  Sum_probs=124.1

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA   85 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   85 (198)
                      ...+.+||+++|++|||||||+++|.++.+. ...+|.+......    ....+.+.+||++|++.+...+..++.++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETL----SYKNLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEE----EETTEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEE----eeCCEEEEEEecccccccchhHHhhhcccee
Confidence            3456899999999999999999999877653 3446666553322    2345778999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEccCCCCC
Q 048059           86 AVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQ-----FSQENGMFYIETSAKTAQN  159 (198)
Q Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~  159 (198)
                      +++|||++++.++.....|+..+.. ....+.|++|++||+|+....  ..+++..     .+...++++++|||++|+|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            9999999999999988877766544 344678999999999985432  2333322     2233467899999999999


Q ss_pred             HHHHHHHHHHHHHhhC
Q 048059          160 INELFYEIAKRLARVS  175 (198)
Q Consensus       160 i~~~~~~l~~~~~~~~  175 (198)
                      ++++|+||++.+.+++
T Consensus       166 v~e~~~~l~~~i~~~~  181 (182)
T d1moza_         166 ITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999987753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=186.19  Aligned_cols=157  Identities=21%  Similarity=0.371  Sum_probs=121.9

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      ...+||+++|++|||||||+++|..+.+.. ..+|.+...    .......+.+.+||+||++.+...+..++.+++++|
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            346999999999999999999998766432 334444432    222334578899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCCCHHHHHH-----HHHHcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQ-----FSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      +|||+++.+++..+..|+..+.. ......|+++++||+|+.....  ..++..     .+...++.+++|||++|+||+
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc--HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            99999999999999877766554 3446789999999999865332  222222     222346679999999999999


Q ss_pred             HHHHHHHHHH
Q 048059          162 ELFYEIAKRL  171 (198)
Q Consensus       162 ~~~~~l~~~~  171 (198)
                      ++|+||...+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=3.1e-29  Score=172.01  Aligned_cols=154  Identities=18%  Similarity=0.296  Sum_probs=121.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   90 (198)
                      +||+|+|++|||||||+++|.++.+..........     ........+.+.+||++|...+...+..++.++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988765444333221     1233455678899999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHH-----HHHHHcCCeEEEEccCCCCCHHHHH
Q 048059           91 DISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGE-----QFSQENGMFYIETSAKTAQNINELF  164 (198)
Q Consensus        91 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~  164 (198)
                      |.+++.++..+..|+..+... .....|+++++||.|+.....  ..+..     .+++..++++++|||++|+|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc--HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            999999999988777776553 346689999999999865432  22222     2334457789999999999999999


Q ss_pred             HHHHHHH
Q 048059          165 YEIAKRL  171 (198)
Q Consensus       165 ~~l~~~~  171 (198)
                      +||.+++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=4.6e-27  Score=163.81  Aligned_cols=157  Identities=21%  Similarity=0.293  Sum_probs=116.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      .+.+||+|+|.+|||||||+++|.++.+.. ..++.+......    ......+.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEI----VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCEEE----EETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeEEEE----eecceEEEEeccccccccccchhhhhccceeee
Confidence            456999999999999999999999877643 233333332221    123467889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 048059           88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNIN  161 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  161 (198)
                      +++|.++..+++....+....... .....|+++|+||+|+.....  .++.....     ...+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999999998876655544432 336789999999999865433  23333322     2345689999999999999


Q ss_pred             HHHHHHHHHH
Q 048059          162 ELFYEIAKRL  171 (198)
Q Consensus       162 ~~~~~l~~~~  171 (198)
                      ++|+||.+++
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=2e-26  Score=159.01  Aligned_cols=160  Identities=21%  Similarity=0.338  Sum_probs=122.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      +.+||+++|++|||||||+++|+++.+.. ..++.+...    .......+.+.+||.++.+.+...+...+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV----ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE----EEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceee----eeeccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            45899999999999999999999987653 334444332    2223345678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHH-HhCCCCceEEEEEeCCCCCCCCCCCHHHHH----HHHHHcCCeEEEEccCCCCCHHHH
Q 048059           89 VYDISNMDTFNRANKLVQELQ-RQGNQIVVMALAANKSDLDSQREVPTEEGE----QFSQENGMFYIETSAKTAQNINEL  163 (198)
Q Consensus        89 v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~~i~~~  163 (198)
                      ++|+.+..++.....++.... .......|+++++||.|+...... .+...    .++...+++++++||++|.||+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            999998888877765544433 334467899999999998654332 12222    234445778999999999999999


Q ss_pred             HHHHHHHHHhh
Q 048059          164 FYEIAKRLARV  174 (198)
Q Consensus       164 ~~~l~~~~~~~  174 (198)
                      |++|++.+.++
T Consensus       158 ~~~l~~~l~~k  168 (169)
T d1upta_         158 MEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999988654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.2e-26  Score=162.56  Aligned_cols=158  Identities=18%  Similarity=0.196  Sum_probs=117.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      +.+||+++|..|||||||+++|....++     +.+.    ....+......+++||++|++.+...|..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSE----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC-----CccE----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            3689999999999999999999876543     3332    223344556788999999999999999999999999999


Q ss_pred             EEECCChhhH-----------HHHHHHHHHHHHhCCCCceEEEEEeCCCCCC---------------CCCCCHHHHHHHH
Q 048059           89 VYDISNMDTF-----------NRANKLVQELQRQGNQIVVMALAANKSDLDS---------------QREVPTEEGEQFS  142 (198)
Q Consensus        89 v~d~~~~~s~-----------~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---------------~~~~~~~~~~~~~  142 (198)
                      |||.++..++           +....|...+........|+++++||.|+..               .......+...+.
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999887765           3334555555555567789999999999621               0111222222211


Q ss_pred             H-----H------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          143 Q-----E------NGMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       143 ~-----~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      .     .      ..+.++++||+++.||+++|+.+.+.+.+++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~n  195 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  195 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhcC
Confidence            1     1      2456789999999999999999998887653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.9e-27  Score=167.73  Aligned_cols=161  Identities=18%  Similarity=0.194  Sum_probs=126.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      +.+||+++|..|||||||+++|..+.+  .+.||+|.++..    +....+.+++||++|++.+...|..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeE
Confidence            368999999999999999999988775  367898876433    33455778899999999999999999999999999


Q ss_pred             EEECCChh-----------hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC----------------CCCCHHHHHHH
Q 048059           89 VYDISNMD-----------TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ----------------REVPTEEGEQF  141 (198)
Q Consensus        89 v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------------~~~~~~~~~~~  141 (198)
                      +||.++..           .++....|...+......+.|+++++||.|+.+.                ...+......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998764           3466677888887777788999999999997311                12233333333


Q ss_pred             HHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          142 SQE----------NGMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       142 ~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      ...          ..+.++++||++|.|++++|+.+.+.+.+.+
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            221          2345789999999999999999999888764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.7e-25  Score=149.95  Aligned_cols=151  Identities=20%  Similarity=0.198  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD   91 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   91 (198)
                      ||+++|++|||||||+++|+++.+. ...++.+....  .  .........+||++|...+...++.++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--E--LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--E--ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE--E--eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            8999999999999999999998754 45566664432  2  23334567799999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH------------HHcCCeEEEEccCCCC
Q 048059           92 ISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS------------QENGMFYIETSAKTAQ  158 (198)
Q Consensus        92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~  158 (198)
                      .++..++.....|+...... ...+.|++++++|.|+....  ...+..+..            ...++.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            99999988887766666553 34678999999999985432  233332222            1224579999999999


Q ss_pred             CHHHHHHHHHH
Q 048059          159 NINELFYEIAK  169 (198)
Q Consensus       159 ~i~~~~~~l~~  169 (198)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.3e-25  Score=156.68  Aligned_cols=157  Identities=17%  Similarity=0.124  Sum_probs=105.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh--------cccchhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY--------HSLAPMY   79 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~   79 (198)
                      +.-.|+|+|.+|||||||+++|++...... ..+............  .....+.+|||||....        ......+
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceee--eeeeeeeecccccccccccccchhcccccccc
Confidence            345799999999999999999998754321 112111122222222  23356889999997432        2223345


Q ss_pred             hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCCC
Q 048059           80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQ  158 (198)
Q Consensus        80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  158 (198)
                      +.++|++|+|+|++++..... ..|.+.++.. ..+.|+++|+||+|+....   .+....+....+ ..++++||++|.
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCC
Confidence            688999999999987644322 3444444443 3568999999999985432   233445555554 478999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 048059          159 NINELFYEIAKRLA  172 (198)
Q Consensus       159 ~i~~~~~~l~~~~~  172 (198)
                      |+++++++|++.+.
T Consensus       157 gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         157 QVAELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999999987654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.3e-25  Score=154.18  Aligned_cols=152  Identities=19%  Similarity=0.179  Sum_probs=108.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc--------ccchhhh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH--------SLAPMYY   80 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~   80 (198)
                      .+||+++|++|||||||+++|++..... ...+...........  ......+.++|++|.....        .....++
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHI--HIDGMPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEE--EETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeee--eccCceeeeccccccccccccchhHHHHHHHHHH
Confidence            3799999999999999999999866432 222222222222223  3334567899999963222        2234557


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      ..+|++++++|..+..+++....|...+... ....|+++|+||+|+.......       .+..+.+++++||++|.|+
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTH
T ss_pred             Hhccccceeeccccccchhhhhhhhhhhhhc-ccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCH
Confidence            8999999999999888777777666665554 3568999999999985433221       1224568999999999999


Q ss_pred             HHHHHHHHHHH
Q 048059          161 NELFYEIAKRL  171 (198)
Q Consensus       161 ~~~~~~l~~~~  171 (198)
                      ++++++|.+.+
T Consensus       151 ~~L~~~l~~~l  161 (161)
T d2gj8a1         151 DVLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            99999998753

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=7.1e-24  Score=148.19  Aligned_cols=157  Identities=18%  Similarity=0.198  Sum_probs=111.8

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV   87 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   87 (198)
                      .+..||+++|++|||||||+++|+++.+.. ..++.+.+...  +...+  ..+.+||+.+...+...+..+....++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEE--LTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE--EEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeE--EEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            456899999999999999999999877643 33554444322  33333  45779999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeE
Q 048059           88 VVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-----------------NGMFY  149 (198)
Q Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~  149 (198)
                      +++|.++...+.....++..... ....+.|+++++||.|+...  ............                 .++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888777654444433 34467899999999997543  233444433321                 23468


Q ss_pred             EEEccCCCCCHHHHHHHHHHHH
Q 048059          150 IETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       150 ~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      ++|||++|+|++++|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.2e-24  Score=152.89  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=111.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV   89 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   89 (198)
                      .+||+++|.+|||||||+++|.   +...+.||+|....    .+..+...+.+||++|++.+...|..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~----~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE----EEEETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE----EEeeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            4899999999999999999994   44567789886533    2334567789999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHHHHHHHHH-HhCCCCceEEEEEeCCCCCCC----------------CCCCHHHHHHHH
Q 048059           90 YDISNMDT----------FNRANKLVQELQ-RQGNQIVVMALAANKSDLDSQ----------------REVPTEEGEQFS  142 (198)
Q Consensus        90 ~d~~~~~s----------~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~----------------~~~~~~~~~~~~  142 (198)
                      |+.++..+          ++....++..+. .....+.|+++++||.|+.+.                ...+.+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99987543          333334444433 334578899999999997310                112334444443


Q ss_pred             HH-----------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          143 QE-----------NGMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       143 ~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                      ..           ..+.++++||+++.||+++|+.+.+.+.+.+
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            32           1355778999999999999999988877653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=4.5e-24  Score=149.03  Aligned_cols=159  Identities=16%  Similarity=0.065  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh----cc---cchhhhcCCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY----HS---LAPMYYRGAA   84 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~---~~~~~~~~~d   84 (198)
                      +|+++|.+|||||||+++|++........+..+... ............+++|||||....    ..   .....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCC-EEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceee-eeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            489999999999999999997654333222222222 222233334456789999995321    11   1223467899


Q ss_pred             eEEEEEECCCh--hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059           85 AAVVVYDISNM--DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        85 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      ++++++|....  .+++....|+...... ....|+++|+||+|+.....  .+...+.....+.+++++||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccc-cchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998543  2233333333332211 13468999999999865332  2344455556788999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 048059          163 LFYEIAKRLARV  174 (198)
Q Consensus       163 ~~~~l~~~~~~~  174 (198)
                      +++.|.+.+...
T Consensus       159 L~~~i~~~l~~~  170 (180)
T d1udxa2         159 LKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhc
Confidence            999988877543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=8e-24  Score=147.64  Aligned_cols=163  Identities=17%  Similarity=0.127  Sum_probs=106.2

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-----ceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcC
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTI-----GAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG   82 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   82 (198)
                      .+.++|+++|++|+|||||+++|++.........+.     +.+.......+......+.++|++|+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            467899999999999999999999643222111111     111111111222234568899999999988888888999


Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHH----cCCeEEEEccCC
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQE----NGMFYIETSAKT  156 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~----~~~~~~~~Sa~~  156 (198)
                      +|++++++|+++....+. ...+..+..   .+.|+++++||+|+......  ..+....+.+.    .+.+++++||++
T Consensus        83 ~d~~ilv~d~~~g~~~~~-~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQT-GEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             CCEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             ccccccccccccccchhh-hhhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            999999999987543322 222222322   35689999999998643211  11112222221    245899999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 048059          157 AQNINELFYEIAKRLARV  174 (198)
Q Consensus       157 ~~~i~~~~~~l~~~~~~~  174 (198)
                      |.|++++++.|...+.+.
T Consensus       159 g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             CTTHHHHHHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHhcCCcc
Confidence            999999999999887654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.2e-23  Score=145.76  Aligned_cols=158  Identities=20%  Similarity=0.126  Sum_probs=100.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch---------hhcccchhhhcC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE---------RYHSLAPMYYRG   82 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~~~   82 (198)
                      .|+|+|++|||||||+++|++..... .....+.+.......+......+.++|++|..         .+...+..++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcce-ecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            68999999999999999999755321 11122222222222334445668899999842         122233445678


Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE  162 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      +|+++++.+.+.....+ ...++..+...   +.|+++|+||+|+..+.  ..+...++.+.....++++||++|.|+++
T Consensus        81 ad~i~~~~~~~~~~~~~-~~~~~~~l~~~---~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKE-DESLADFLRKS---TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             CSEEEEEEETTTCCCHH-HHHHHHHHHHH---TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             CcEEEEeeccccccccc-ccccccccccc---cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence            99999999987654332 24455555443   35899999999985321  12222333333345789999999999999


Q ss_pred             HHHHHHHHHHhhCC
Q 048059          163 LFYEIAKRLARVSP  176 (198)
Q Consensus       163 ~~~~l~~~~~~~~~  176 (198)
                      ++++|++.+.+...
T Consensus       155 L~~~i~~~l~e~~~  168 (171)
T d1mkya1         155 MLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCCC
Confidence            99999999887654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.1e-23  Score=144.21  Aligned_cols=149  Identities=18%  Similarity=0.182  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc---------ccchhhh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH---------SLAPMYY   80 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~   80 (198)
                      +||+++|.+|||||||+++|++..... ...+..........+...  ...+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeC--CeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            699999999999999999999865332 112222222222223333  4567899999952111         1122235


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI  160 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  160 (198)
                      .++|++++|+|.+++...+....+.. +     ...++++++||.|+.....  .++... ....+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~~-~-----~~~~~i~~~~k~d~~~~~~--~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILER-I-----KNKRYLVVINKVDVVEKIN--EEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHHH-H-----TTSSEEEEEEECSSCCCCC--HHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhhh-c-----ccccceeeeeeccccchhh--hHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            78999999999998776554432221 1     3457899999999865432  333222 2234578999999999999


Q ss_pred             HHHHHHHHHH
Q 048059          161 NELFYEIAKR  170 (198)
Q Consensus       161 ~~~~~~l~~~  170 (198)
                      ++++++|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=4.6e-22  Score=139.01  Aligned_cols=151  Identities=19%  Similarity=0.180  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch---------------hhcccc
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE---------------RYHSLA   76 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------------~~~~~~   76 (198)
                      .|+++|++|||||||+|+|++........+  |.+.....+...    .+.++||||..               .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~--g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCC--CEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998765433333  222222333222    25689999952               111223


Q ss_pred             hhhhcCCCeEEEEEECCChhhHHHH----------HHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Q 048059           77 PMYYRGAAAAVVVYDISNMDTFNRA----------NKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG  146 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~----------~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  146 (198)
                      ...++.+|++++|+|.+........          ..+++.+..   .+.|+++|+||+|+.+..+   +....+.....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ---EVINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH---HHHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH---HHHHHHHHHhc
Confidence            3445789999999998754322111          112222322   3579999999999754321   22222233322


Q ss_pred             -------CeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059          147 -------MFYIETSAKTAQNINELFYEIAKRLARV  174 (198)
Q Consensus       147 -------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  174 (198)
                             ..++++||++|.|+++++++|.+.+.++
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence                   2488999999999999999999988764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.5e-21  Score=137.84  Aligned_cols=118  Identities=21%  Similarity=0.292  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-ccchhhhcCCCeEEEEE
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-SLAPMYYRGAAAAVVVY   90 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~   90 (198)
                      +|+|+|++|||||||+++|+++.+... .++.+.+.....+ .....+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999999876543 4666665543332 24456789999999998775 57788889999999999


Q ss_pred             ECCChhhH-HHHHHHH-HHHHH--hCCCCceEEEEEeCCCCCCCC
Q 048059           91 DISNMDTF-NRANKLV-QELQR--QGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        91 d~~~~~s~-~~~~~~~-~~~~~--~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      |+++..++ .....++ ..+..  ......|++|++||+|+....
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            99987764 4443333 33332  234568999999999997544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=4.8e-23  Score=148.21  Aligned_cols=159  Identities=18%  Similarity=0.228  Sum_probs=115.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV   88 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   88 (198)
                      ..+||+++|+.|||||||+++|..+.    ..||.|...  ..+.+  +.+.+.+||++|++.++..|..++++++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~--~~~~~--~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFE--TKFQV--DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEE--EEEEE--TTEEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEE--EEEEE--CcEEEEEEecCccceeccchhhhcccccceEE
Confidence            46899999999999999999997654    457888553  33333  35778899999999999999999999999999


Q ss_pred             EEECCChhh----------H-HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--------------------------
Q 048059           89 VYDISNMDT----------F-NRANKLVQELQRQGNQIVVMALAANKSDLDSQR--------------------------  131 (198)
Q Consensus        89 v~d~~~~~s----------~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------------------------  131 (198)
                      ++|.++...          + +....|...+......+.|++|++||+|+.+++                          
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            999886432          2 333344444444445779999999999973110                          


Q ss_pred             ----CCCHHHHHHHHHH-------------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059          132 ----EVPTEEGEQFSQE-------------NGMFYIETSAKTAQNINELFYEIAKRLARVS  175 (198)
Q Consensus       132 ----~~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  175 (198)
                          .....++..+...             ..+.++++||.++.+++.+|+.+.+.+++.+
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                0012233333211             1244678999999999999999887777653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.3e-21  Score=137.05  Aligned_cols=158  Identities=21%  Similarity=0.166  Sum_probs=100.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc------------cc
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS------------LA   76 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------~~   76 (198)
                      .+||+|+|.+|||||||+++|++..... ...+..........+...+  ..+.++|++|......            ..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHHH
Confidence            5999999999999999999999765321 1112111111122233333  4577999998643222            23


Q ss_pred             hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEE
Q 048059           77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-----NGMFYIE  151 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~  151 (198)
                      ...+..+|++++|+|++.+.. ++...+...+..   .+.|+++++||+|+.........+..+....     ..+++++
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  161 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHhcCCEEEEeecccccch-hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEE
Confidence            334578999999999976543 222334333333   3569999999999865544434443333332     2457999


Q ss_pred             EccCCCCCHHHHHHHHHHHHHh
Q 048059          152 TSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      +||++|.|+++++++|.+.+..
T Consensus       162 vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         162 TSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999776654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=6.8e-21  Score=134.34  Aligned_cols=163  Identities=17%  Similarity=0.137  Sum_probs=107.4

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----CCCcceeEEEEEEE-------------------eCCcEEEEE
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-----EPTIGAAFFTQILS-------------------LSEATVKFD   62 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~-----~~~~~~~~~~~~~~-------------------~~~~~~~~~   62 (198)
                      +++.+||+++|+.++|||||+++|++.......     ..+....+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            467799999999999999999999874322111     11111111111111                   111245689


Q ss_pred             EEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHH
Q 048059           63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQ  140 (198)
Q Consensus        63 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~  140 (198)
                      ++|+||+..|.......+..+|++++|+|+.+.....+....+..+...  ...+++++.||.|+.+....  ..+...+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~--~~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh--cCccceeeeecccchhhHHHHHHHHHHHH
Confidence            9999999999888888889999999999998754333333334334333  23468889999998643211  1222333


Q ss_pred             HHHHc---CCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          141 FSQEN---GMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       141 ~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      +....   +++++++||++|+|++++++.+.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            33332   36899999999999999998887654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=1.9e-21  Score=140.28  Aligned_cols=160  Identities=20%  Similarity=0.130  Sum_probs=102.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEE--------------EEeCCcEEEEEEEeCCCchhhcccc
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQI--------------LSLSEATVKFDIWDTAGQERYHSLA   76 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~--------------~~~~~~~~~~~l~D~~g~~~~~~~~   76 (198)
                      |+|+|++++|||||+++|++.........  +.........              ..+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999987432211111  1000110110              1123344578899999999998888


Q ss_pred             hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC-------------H-------H
Q 048059           77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP-------------T-------E  136 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-------------~-------~  136 (198)
                      ...+..+|++|+|+|+.+.-..+. ...+..+..   .+.|++|++||+|+.......             .       +
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888899999999999976533322 233333333   456999999999985432211             0       0


Q ss_pred             HHHHHHHH------------------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059          137 EGEQFSQE------------------NGMFYIETSAKTAQNINELFYEIAKRLARVSP  176 (198)
Q Consensus       137 ~~~~~~~~------------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  176 (198)
                      ...+....                  ..++++++||++|.|++++++.|.....+...
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            00000110                  01468999999999999999998886655443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=6.8e-22  Score=138.38  Aligned_cols=157  Identities=18%  Similarity=0.125  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----cch---hhhcCCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----LAP---MYYRGAA   84 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~~---~~~~~~d   84 (198)
                      +|+|+|++|||||||+|+|++........+..+.........+.+ ...+.+|||||......    ...   ..+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            689999999999999999987654322222222221122222222 23577999999633222    111   2245688


Q ss_pred             eEEEEEECCChhhHHHHH--HHHHHHHH---hCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEccCCC
Q 048059           85 AAVVVYDISNMDTFNRAN--KLVQELQR---QGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN--GMFYIETSAKTA  157 (198)
Q Consensus        85 ~~i~v~d~~~~~s~~~~~--~~~~~~~~---~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~  157 (198)
                      .++++++...........  .+......   ....+.|+++|+||+|+....    +....+...+  +.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCC
Confidence            888888765443322221  11111111   222457999999999986422    2334444433  678999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 048059          158 QNINELFYEIAKRLAR  173 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~  173 (198)
                      .|++++++.|.+.+.+
T Consensus       158 ~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         158 EGLRELLFEVANQLEN  173 (185)
T ss_dssp             STTHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999988743

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=2.8e-20  Score=131.08  Aligned_cols=153  Identities=16%  Similarity=0.151  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----------h---cccch
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----------Y---HSLAP   77 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~---~~~~~   77 (198)
                      .+|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|+++...          .   ...+.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            4899999999999999999998654333333323222222222232   233566655311          1   11222


Q ss_pred             hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCeEEEEc
Q 048059           78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE----NGMFYIETS  153 (198)
Q Consensus        78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~S  153 (198)
                      ..+..++++++++|++.+.. .....+++.+..   ...|+++|+||+|+....+. .+....+.+.    .+.+++.+|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPS-NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhcccccc-cccccccccccc---ccCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEEEe
Confidence            33456899999999876533 222344444444   34689999999997543322 2222333332    345799999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 048059          154 AKTAQNINELFYEIAKRL  171 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~  171 (198)
                      |++|.|+++++++|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998875

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=4.5e-20  Score=131.03  Aligned_cols=163  Identities=17%  Similarity=0.140  Sum_probs=102.7

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----CCcceeEEEEEEEe------------------------CCcE
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQE-----PTIGAAFFTQILSL------------------------SEAT   58 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~------------------------~~~~   58 (198)
                      .+.++|+++|+.++|||||+++|++........     .+............                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            456899999999999999999998632211100     00000000000000                        1123


Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC--HH
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP--TE  136 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~  136 (198)
                      ..+.++|+||+..|.......+..+|++|+|+|+.+.-.-.+....+..+...  ...|++|+.||+|+.......  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHHHH
Confidence            46889999999999888788888999999999998753222333333333332  234889999999986432211  11


Q ss_pred             HHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          137 EGEQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       137 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      ....+....   +++++++||++|.|++++++.|...+.
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            122222222   468999999999999999998877643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.82  E-value=1.2e-20  Score=132.72  Aligned_cols=159  Identities=16%  Similarity=0.133  Sum_probs=106.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhC-----CCC---------CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKG-----QFY---------DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS   74 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   74 (198)
                      +.+||+++|+.++|||||+++|++.     ...         .......|.+.......+......+.++||||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            4689999999999999999999751     000         00111223444444455555667789999999999988


Q ss_pred             cchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-----
Q 048059           75 LAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV---PTEEGEQFSQENG-----  146 (198)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----  146 (198)
                      .....+..+|++++|+|+.+... ++..+.+..+...  ...|++|+.||.|+....+.   ...+...+....+     
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            88888899999999999987543 3334444444343  33578999999998543221   1123334444333     


Q ss_pred             CeEEEEccCCC----------CCHHHHHHHHHHH
Q 048059          147 MFYIETSAKTA----------QNINELFYEIAKR  170 (198)
Q Consensus       147 ~~~~~~Sa~~~----------~~i~~~~~~l~~~  170 (198)
                      ++++++||++|          .++.++++.|.+.
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            57999999988          4788887776554

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.1e-19  Score=122.34  Aligned_cols=158  Identities=14%  Similarity=0.120  Sum_probs=97.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEEEeCCcEEEEEEEeCCCchh---------hcccchh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQE-PTIGAAFFTQILSLSEATVKFDIWDTAGQER---------YHSLAPM   78 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~   78 (198)
                      +.-.|+|+|.+|||||||+|+|++........ +...............  ..+..+|++|...         .......
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhcccc
Confidence            44569999999999999999999865432222 2211121122222222  3355678776421         1222333


Q ss_pred             hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCC
Q 048059           79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTA  157 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  157 (198)
                      ....+++++++.|..+...  ....+...+..   ...|.++++||.|..............+..+++ .+++++||++|
T Consensus        82 ~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g  156 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  156 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             chhhcceeEEEEecCccch--hHHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence            3456788888888765332  22222223322   445788899999976544333344455555555 48999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 048059          158 QNINELFYEIAKRLAR  173 (198)
Q Consensus       158 ~~i~~~~~~l~~~~~~  173 (198)
                      .|+++++++|.+.+.+
T Consensus       157 ~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         157 LNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             TTHHHHHHHHHTTCCB
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            9999999998876643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.76  E-value=6.6e-18  Score=120.70  Aligned_cols=155  Identities=21%  Similarity=0.223  Sum_probs=98.4

Q ss_pred             CCCceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCC-----------------------------CCCcceeEEEEEE
Q 048059            4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKG--QFYDQQ-----------------------------EPTIGAAFFTQIL   52 (198)
Q Consensus         4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~   52 (198)
                      .+++...+||+++|..++|||||+.+|+..  ......                             ....+.+......
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            355667899999999999999999999741  111000                             0000111111222


Q ss_pred             EeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059           53 SLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus        53 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      .+......+.++|+||+..|..........+|++++|+|+.+...-+ ....+..+...  .-..++++.||.|+.+..+
T Consensus        83 ~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~~--gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          83 YFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL--GIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             EEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT--TCCEEEEEEECTTTTTSCH
T ss_pred             EEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHHHHc--CCCEEEEEEEccccccccc
Confidence            23334457889999999999888888889999999999997654333 22233333332  2245889999999875442


Q ss_pred             CCH----HHHHHHHHHcC-----CeEEEEccCCCCCHH
Q 048059          133 VPT----EEGEQFSQENG-----MFYIETSAKTAQNIN  161 (198)
Q Consensus       133 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  161 (198)
                      ...    ++...+..+.+     ++++++||.+|+|+.
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            211    23344444443     367899999999883

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=2e-18  Score=122.17  Aligned_cols=143  Identities=15%  Similarity=0.104  Sum_probs=91.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCC----CCC--CC----CC-----CcceeEEEEEEEeCCcEEEEEEEeCCCchhhc
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQ----FYD--QQ----EP-----TIGAAFFTQILSLSEATVKFDIWDTAGQERYH   73 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~----~~~--~~----~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   73 (198)
                      +.+||+++|++++|||||+++|+...    ...  ..    ..     ..|.+.......+.....++.|+||||+..|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            46899999999999999999997410    000  00    00     00233333444455556678899999999998


Q ss_pred             ccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCc-eEEEEEeCCCCCCCCCC---CHHHHHHHHHHcC---
Q 048059           74 SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV-VMALAANKSDLDSQREV---PTEEGEQFSQENG---  146 (198)
Q Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~---  146 (198)
                      ......+..+|++|+|+|+.+....+..+ .+..+...   +. +++|++||.|+....+.   ..+++..+....+   
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            88888889999999999998765544433 33333332   33 47788999998542211   1122333333332   


Q ss_pred             --CeEEEEccC
Q 048059          147 --MFYIETSAK  155 (198)
Q Consensus       147 --~~~~~~Sa~  155 (198)
                        ++++..|+.
T Consensus       158 ~~i~~i~~sa~  168 (204)
T d2c78a3         158 DEVPVIRGSAL  168 (204)
T ss_dssp             TTSCEEECCHH
T ss_pred             ccceeeeeech
Confidence              467888875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=7e-18  Score=119.69  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=81.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhh----cCCCe
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYY----RGAAA   85 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~----~~~d~   85 (198)
                      +.+|+|+|++|||||||+|+|+++.+.    ++.+.+.  ....+......+.+||+||++.+...+..++    ..++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQE--PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSS--CEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecc--eEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            458999999999999999999987653    2222222  2223444455678999999987766655554    45688


Q ss_pred             EEEEEECC-ChhhHHHHHHHH----HHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           86 AVVVYDIS-NMDTFNRANKLV----QELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        86 ~i~v~d~~-~~~s~~~~~~~~----~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      +++++|.. +..+++....|+    ..+......+.|+++++||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            88888875 455555555544    33344556789999999999986543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.3e-17  Score=114.81  Aligned_cols=161  Identities=11%  Similarity=0.064  Sum_probs=81.7

Q ss_pred             CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-------cccchh
Q 048059            6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-------HSLAPM   78 (198)
Q Consensus         6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~   78 (198)
                      +.+..++|+++|.+|||||||+|+|++...........+................+...+.++....       ......
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence            4556799999999999999999999886644332222222222222222223332223333222111       111111


Q ss_pred             h---hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC--HHHHHHHHHHc--CCeEEE
Q 048059           79 Y---YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP--TEEGEQFSQEN--GMFYIE  151 (198)
Q Consensus        79 ~---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~  151 (198)
                      .   ....+.++.+.+...... .....++..+..   ...++++++||.|+.......  .+...+.....  ..+++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  167 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  167 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             hhhhhhheeEEEEeecccccch-hHHHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence            1   123444555555544332 222334444433   345788999999975432211  11112222222  347899


Q ss_pred             EccCCCCCHHHHHHHHHHH
Q 048059          152 TSAKTAQNINELFYEIAKR  170 (198)
Q Consensus       152 ~Sa~~~~~i~~~~~~l~~~  170 (198)
                      +||++|.|++++++.|.+.
T Consensus       168 vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         168 FSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             CBTTTTBSHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHH
Confidence            9999999999999988664

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.67  E-value=1.6e-16  Score=115.14  Aligned_cols=156  Identities=17%  Similarity=0.159  Sum_probs=83.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCC---------------------------CCCCCcceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKG--QFYD---------------------------QQEPTIGAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   57 (198)
                      ....++|+++|+.++|||||+.+|+..  ....                           ......+.........+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            345789999999999999999999531  0000                           00000111111112222334


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhH------HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF------NRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      ...+.++|+||+..|..........+|++++|+|+.+..--      .+....+..+...  ...++++++||.|+....
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEEcCCCCccc
Confidence            45789999999999988888888999999999999764211      1222333333332  223588999999986422


Q ss_pred             CC--CH----HHHHHHHHHc-------CCeEEEEccCCCCCHHHHH
Q 048059          132 EV--PT----EEGEQFSQEN-------GMFYIETSAKTAQNINELF  164 (198)
Q Consensus       132 ~~--~~----~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~  164 (198)
                      ..  ..    ++...+..+.       .++++++||++|+||.+++
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            11  11    1222222222       3579999999999997654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=7.7e-16  Score=112.67  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--CCCCC----C----------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG--QFYDQ----Q----------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS   74 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~--~~~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   74 (198)
                      .||.++|+.++|||||+.+|+..  .....    .          ...-+.+.......+..+..++.|+||||+..|..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            48999999999999999998741  11100    0          00001122222344455667899999999999999


Q ss_pred             cchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059           75 LAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD  128 (198)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  128 (198)
                      .....+.-+|++|+|+|+.+.-......-|. ...   ..+.|.++++||.|..
T Consensus        87 e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~-~a~---~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          87 EVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAE---KYKVPRIAFANKMDKT  136 (276)
T ss_dssp             THHHHHHHCCEEEEEEETTTSSCHHHHHHHH-HHH---TTTCCEEEEEECTTST
T ss_pred             HHHHHHHhhhheEEeccccCCcchhHHHHHH-HHH---HcCCCEEEEEeccccc
Confidence            9999999999999999998775544444443 332   3568999999999973

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.4e-16  Score=114.95  Aligned_cols=154  Identities=15%  Similarity=0.165  Sum_probs=97.2

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHh--CCCCC---------------CC------------CCCcceeEEEEEEEeCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIK--GQFYD---------------QQ------------EPTIGAAFFTQILSLSEA   57 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~--~~~~~---------------~~------------~~~~~~~~~~~~~~~~~~   57 (198)
                      +...+||+++|+.++|||||+.+|+.  +....               ..            ....|.+.......+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            34569999999999999999999963  11000               00            000122222222333344


Q ss_pred             EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhH------HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF------NRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      ..++.|+|+||+..|..........+|++|+|+|+....--      .+....+......  .-.++++++||.|+....
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~--gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEEECGGGGTTC
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc--CCCeEEEEEECCCCCCCC
Confidence            57899999999999998888889999999999998754210      1222222222222  223688899999986543


Q ss_pred             CCC----HHHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 048059          132 EVP----TEEGEQFSQENG-----MFYIETSAKTAQNINE  162 (198)
Q Consensus       132 ~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  162 (198)
                      ...    .++...+....+     ++++.+|+..|.|+-+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            211    133344444443     5689999999988643

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=7.2e-17  Score=115.74  Aligned_cols=152  Identities=16%  Similarity=0.230  Sum_probs=93.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCC--CCC---------------------------CCCCCcceeEEEEEEEeCCcEE
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQ--FYD---------------------------QQEPTIGAAFFTQILSLSEATV   59 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   59 (198)
                      +.+||+++|+.++|||||+.+|+...  ...                           ......|.+.......+....+
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            46899999999999999999986310  000                           0001112222233334445557


Q ss_pred             EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhH------HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC
Q 048059           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF------NRANKLVQELQRQGNQIVVMALAANKSDLDSQREV  133 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  133 (198)
                      .+.|+||||+..|.......++-+|++|+|+|+.+...-      .+..+.+......  ...++++++||.|+......
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTC
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCcccc
Confidence            789999999999999888999999999999999875321      1222222222222  33468888999998542211


Q ss_pred             ------CHHHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 048059          134 ------PTEEGEQFSQEN-----GMFYIETSAKTAQNINE  162 (198)
Q Consensus       134 ------~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  162 (198)
                            ...+...+...+     .++++++||..|.|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence                  112233333333     35689999999998753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.63  E-value=1.1e-15  Score=111.62  Aligned_cols=113  Identities=17%  Similarity=0.116  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC--CCCC----CCCC----------cceeEEEEEEEeCCcEEEEEEEeCCCchhhcc
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ--FYDQ----QEPT----------IGAAFFTQILSLSEATVKFDIWDTAGQERYHS   74 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~--~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   74 (198)
                      .||+|+|+.++|||||+.+|+...  ....    ...+          -+.+.......+..+..++.++||||+..|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            479999999999999999996321  1100    0000          01122233334444566789999999999999


Q ss_pred             cchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059           75 LAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL  127 (198)
Q Consensus        75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  127 (198)
                      .....++-+|++|+|+|+.+.-.......|. ....   .+.|.++++||.|.
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~---~~~p~~i~iNk~D~  131 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER---LGLPRMVVVTKLDK  131 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECGGG
T ss_pred             hhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh---cccccccccccccc
Confidence            8889999999999999998765544444443 3333   45689999999995

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=9.4e-15  Score=112.90  Aligned_cols=159  Identities=13%  Similarity=0.109  Sum_probs=90.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---cceeEEEEEEEeCCcEEEEEEEeCCCchhhcccch-----hhh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT---IGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAP-----MYY   80 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-----~~~   80 (198)
                      ..++|+|+|.+|||||||+|+|++..........   .+++.....+... ..-.+.||||||.........     ..+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4699999999999999999999985543222211   1122222222222 222467999999754332222     234


Q ss_pred             cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC-------CCCCCCHHHH----HHH----HHHc
Q 048059           81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD-------SQREVPTEEG----EQF----SQEN  145 (198)
Q Consensus        81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-------~~~~~~~~~~----~~~----~~~~  145 (198)
                      ..+|.+|++.|..-.+.  + ..++..+..   .+.|+++|.||+|..       .......+..    ++.    ....
T Consensus       134 ~~~d~~l~~~~~~~~~~--d-~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN--D-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHH--H-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHH--H-HHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            67898888877432221  1 233333433   356999999999952       1111222221    111    1222


Q ss_pred             CC---eEEEEccCC--CCCHHHHHHHHHHHHHhh
Q 048059          146 GM---FYIETSAKT--AQNINELFYEIAKRLARV  174 (198)
Q Consensus       146 ~~---~~~~~Sa~~--~~~i~~~~~~l~~~~~~~  174 (198)
                      ++   ++|.+|..+  ..++.++.+.+.+.+.+.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            33   578888765  458999988887766543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.57  E-value=1.3e-14  Score=105.89  Aligned_cols=125  Identities=13%  Similarity=0.117  Sum_probs=72.6

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccch-------h-
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQE-PTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAP-------M-   78 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~-   78 (198)
                      ...++|+++|.+|||||||+|.|++........ +..............  ...+.++||||.........       . 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~--g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEec--cEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            457999999999999999999999876442221 111112222223333  35688999999632211111       1 


Q ss_pred             -hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCCCCCCCC
Q 048059           79 -YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ--IVVMALAANKSDLDSQREVP  134 (198)
Q Consensus        79 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~  134 (198)
                       .....++++||++.+...--+.....+..+....+.  -.+++||.||+|........
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence             124578899999886532112222223333332221  24789999999986544433

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1e-13  Score=104.24  Aligned_cols=113  Identities=18%  Similarity=0.213  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC--CCC--------------CC--CCCCcceeEEEEEEE------------eCCcEEE
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG--QFY--------------DQ--QEPTIGAAFFTQILS------------LSEATVK   60 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~--~~~--------------~~--~~~~~~~~~~~~~~~------------~~~~~~~   60 (198)
                      .||+|+|+.++|||||+.+|+..  ...              .+  ..-++........+.            ..++.+.
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   97 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL   97 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceE
Confidence            46999999999999999999731  100              00  011111111111111            1345788


Q ss_pred             EEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059           61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL  127 (198)
Q Consensus        61 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  127 (198)
                      +.|+||||+..|.......++-+|++|+|+|+.++-..+...-|.... .   .+.|+++++||.|.
T Consensus        98 inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~---~~~p~i~viNKiDr  160 (341)
T d1n0ua2          98 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDR  160 (341)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHH
T ss_pred             EEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-H---cCCCeEEEEECccc
Confidence            999999999999999999999999999999998776555544444433 2   45799999999996

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.38  E-value=1.6e-13  Score=98.90  Aligned_cols=111  Identities=16%  Similarity=0.035  Sum_probs=65.2

Q ss_pred             EEEEEEeCCCchhhcccchhh-----hcCCCeEEEEEECC---ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHSLAPMY-----YRGAAAAVVVYDIS---NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ  130 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (198)
                      ..+.++|+||+..+.......     ....+.+++++|+.   ++..+.............  ...|.++++||.|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccH
Confidence            347899999997654332222     12456888999874   333332222221112221  34689999999998642


Q ss_pred             CCCCH-----------------------HHHHHH---HH--HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059          131 REVPT-----------------------EEGEQF---SQ--ENGMFYIETSAKTAQNINELFYEIAKRL  171 (198)
Q Consensus       131 ~~~~~-----------------------~~~~~~---~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  171 (198)
                      .....                       +.....   ..  ...++++++||++|+|+++++..|.++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            21100                       000000   01  1356899999999999999999987753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.26  E-value=4.5e-12  Score=94.81  Aligned_cols=104  Identities=11%  Similarity=0.089  Sum_probs=61.8

Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHH
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEG  138 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  138 (198)
                      +.+.|+.|.|.-....   ....-+|.+++|......+..+...   ..+.+.     .=++|+||+|+...........
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k---~gilE~-----aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK---KGIFEL-----ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC---TTHHHH-----CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhh---hhHhhh-----hheeeEeccccccchHHHHHHH
Confidence            4667888887533222   2334599999999987665443322   112121     2367789999765433222222


Q ss_pred             HHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059          139 EQFSQE----------NGMFYIETSAKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       139 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  173 (198)
                      ..+...          +..+++.+||++|.|+++++++|.+....
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            222221          34579999999999999999999776543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.4e-12  Score=94.95  Aligned_cols=102  Identities=18%  Similarity=0.100  Sum_probs=56.2

Q ss_pred             EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC--HHH
Q 048059           60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP--TEE  137 (198)
Q Consensus        60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~  137 (198)
                      .+.|++|.|.....   ......+|.+++|.+....+..+...   ..+.+.     +=++|+||+|+.......  ..+
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k---~gi~e~-----aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIK---KGLMEV-----ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCC---HHHHHH-----CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhc---hhhhcc-----ccEEEEEeecccchHHHHHHHHH
Confidence            35566666542211   12445689999998765544333322   223332     225777999976422111  111


Q ss_pred             HHHHHH-------HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059          138 GEQFSQ-------ENGMFYIETSAKTAQNINELFYEIAKRLA  172 (198)
Q Consensus       138 ~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  172 (198)
                      ......       .+..+++.+||.+|+|++++++.|.+...
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            111111       12347999999999999999999977543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=1.2e-10  Score=85.39  Aligned_cols=81  Identities=19%  Similarity=0.154  Sum_probs=50.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEEEeCCc---------------EEEEEEEeCCCc---
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT--IGAAFFTQILSLSEA---------------TVKFDIWDTAGQ---   69 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~---   69 (198)
                      .+||.++|.|+||||||+++++.........|.  +..+...  +.+.+.               ...+.++|.||-   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv--v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV--VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE--EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE--EecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            379999999999999999999987654333222  1211111  222221               125789999985   


Q ss_pred             -hhhcccch---hhhcCCCeEEEEEEC
Q 048059           70 -ERYHSLAP---MYYRGAAAAVVVYDI   92 (198)
Q Consensus        70 -~~~~~~~~---~~~~~~d~~i~v~d~   92 (198)
                       ..-..+..   ..++++|+++.|+|+
T Consensus        80 a~~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          80 ASKGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cccCCCccHHHHHHHHhccceEEEeec
Confidence             22233333   345789999999986

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.16  E-value=6.3e-10  Score=82.27  Aligned_cols=83  Identities=18%  Similarity=0.178  Sum_probs=53.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCC--CcceeEEEEEEEeCCc---------------EEEEEEEeCCCchh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEP--TIGAAFFTQILSLSEA---------------TVKFDIWDTAGQER   71 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~   71 (198)
                      .++|.++|.|+||||||+++|++... .....|  |+..+...  +.+.+.               ...++++|.||...
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~--v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK--VAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE--EEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEE--EeccccchhhhhhcccCCceecccceeeecccccc
Confidence            48999999999999999999997643 222222  22222222  222221               24688999998532


Q ss_pred             ----hccc---chhhhcCCCeEEEEEECCC
Q 048059           72 ----YHSL---APMYYRGAAAAVVVYDISN   94 (198)
Q Consensus        72 ----~~~~---~~~~~~~~d~~i~v~d~~~   94 (198)
                          -..+   .-..++++|++|+|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence                1222   2234589999999998754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=1.1e-09  Score=81.07  Aligned_cols=120  Identities=15%  Similarity=0.166  Sum_probs=71.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEEe----------------------------------
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSL----------------------------------   54 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------------------------------   54 (198)
                      ..+|+|+|..++|||||+|+|++..+ +....++...........-                                  
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            35799999999999999999999775 4434343322111111000                                  


Q ss_pred             ---------------CCcEEEEEEEeCCCchhh-------------cccchhhhcCCCe-EEEEEECCChhhHHHHHHHH
Q 048059           55 ---------------SEATVKFDIWDTAGQERY-------------HSLAPMYYRGAAA-AVVVYDISNMDTFNRANKLV  105 (198)
Q Consensus        55 ---------------~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~~  105 (198)
                                     ......+.|+|+||....             ..+...|+.+.+. +++|.+.+...+......+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                           000123779999996321             2334556666664 55666665554444444554


Q ss_pred             HHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059          106 QELQRQGNQIVVMALAANKSDLDSQRE  132 (198)
Q Consensus       106 ~~~~~~~~~~~p~iiv~nK~Dl~~~~~  132 (198)
                      ..+   .....++++|.||+|......
T Consensus       186 ~~~---~~~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         186 KEV---DPQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHH---CTTCSSEEEEEECGGGSCTTC
T ss_pred             HHh---CcCCCceeeEEeccccccchh
Confidence            443   233457899999999865433

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=8.4e-10  Score=82.41  Aligned_cols=83  Identities=18%  Similarity=0.127  Sum_probs=45.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CcceeEEEEEEE----------------eCCcEEEEEEEeCCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP------TIGAAFFTQILS----------------LSEATVKFDIWDTAG   68 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~------~~~~~~~~~~~~----------------~~~~~~~~~l~D~~g   68 (198)
                      ++|.++|.|+||||||+|+|++........|      ..|.........                .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4899999999999999999998765443333      122221111100                112336789999999


Q ss_pred             chhh----ccc---chhhhcCCCeEEEEEECC
Q 048059           69 QERY----HSL---APMYYRGAAAAVVVYDIS   93 (198)
Q Consensus        69 ~~~~----~~~---~~~~~~~~d~~i~v~d~~   93 (198)
                      --..    ..+   .-..++++|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            5221    112   223357899999999975

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.90  E-value=2.8e-09  Score=79.00  Aligned_cols=68  Identities=16%  Similarity=0.135  Sum_probs=40.7

Q ss_pred             EEEEEeCCCchh-------------hcccchhhhcCCCeEEEEE-ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 048059           60 KFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVY-DISNMDTFNRANKLVQELQRQGNQIVVMALAANKS  125 (198)
Q Consensus        60 ~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  125 (198)
                      .+.++|+||...             ...++..|+.+++.+|+++ +............+...+   .....++++|.||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            467999999532             2235667788899877665 433322222223333333   23445799999999


Q ss_pred             CCCCC
Q 048059          126 DLDSQ  130 (198)
Q Consensus       126 Dl~~~  130 (198)
                      |....
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=6.3e-09  Score=75.89  Aligned_cols=59  Identities=20%  Similarity=0.308  Sum_probs=36.8

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ   69 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   69 (198)
                      ....++|+|+|.||||||||+|+|.+... ....+.+|.+.....+..+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~-~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccce-EEECCcccccccceEEECCC---CeEEecCCCc
Confidence            44579999999999999999999998653 23445555554444444433   3679999996

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=3.1e-08  Score=69.49  Aligned_cols=59  Identities=20%  Similarity=0.156  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQ------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERY   72 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   72 (198)
                      -..+++|++|||||||+|+|.+.......      .....++.....+.+.+..+   ++||||...+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~---iiDTPG~r~~  160 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGY---VVDTPGFANL  160 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCE---EESSCSSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcE---EEeCCccccc
Confidence            35689999999999999999864322111      11111222233344544443   9999997544

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.46  E-value=8e-07  Score=59.89  Aligned_cols=23  Identities=30%  Similarity=0.670  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      +||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999998863

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.37  E-value=4.1e-07  Score=63.11  Aligned_cols=90  Identities=11%  Similarity=0.033  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCchhhccc----chhhh--------cCCCeEEEEEECCC-hhhHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 048059           59 VKFDIWDTAGQERYHSL----APMYY--------RGAAAAVVVYDISN-MDTFNRANKLVQELQRQGNQIVVMALAANKS  125 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~----~~~~~--------~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  125 (198)
                      ..+.|+||+|...+...    ...+.        ...+-+++|.|++. .+...++...+..+    +   +--++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----~---~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV----G---LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH----C---CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc----C---CceEEEecc
Confidence            46789999996433221    11111        24577899999864 34445555444433    1   224677999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059          126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus       126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      |......    .+...+...++|+..++.  |++.+
T Consensus       162 Det~~~G----~~l~~~~~~~~Pi~~i~~--Gq~p~  191 (207)
T d1okkd2         162 DGTAKGG----VLIPIVRTLKVPIKFVGV--GEGPD  191 (207)
T ss_dssp             TSSCCCT----THHHHHHHHCCCEEEEEC--SSSTT
T ss_pred             CCCCCcc----HHHHHHHHHCCCEEEEeC--CCChH
Confidence            9643322    245566778888877773  44443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=6.3e-07  Score=62.74  Aligned_cols=84  Identities=17%  Similarity=0.154  Sum_probs=58.7

Q ss_pred             hhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH--cCCeEEEEccC
Q 048059           79 YYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE--NGMFYIETSAK  155 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~  155 (198)
                      ...|.|.+++|+++.+|. +...+++++-....   .+.+.+||+||+|+....+  .+....+...  .+.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEeccc
Confidence            457899999999987764 45666666654433   4568889999999864221  2223333332  34688999999


Q ss_pred             CCCCHHHHHHHH
Q 048059          156 TAQNINELFYEI  167 (198)
Q Consensus       156 ~~~~i~~~~~~l  167 (198)
                      ++.|++++..++
T Consensus        82 ~~~g~~~L~~~l   93 (225)
T d1u0la2          82 TGMGIEELKEYL   93 (225)
T ss_dssp             TCTTHHHHHHHH
T ss_pred             cchhHhhHHHHh
Confidence            999999998764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.24  E-value=3.6e-07  Score=63.53  Aligned_cols=91  Identities=20%  Similarity=0.147  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCchhhcc------cchhh--hcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059           59 VKFDIWDTAGQERYHS------LAPMY--YRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDS  129 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  129 (198)
                      ..+.|+||+|...+..      ....+  ..+.+-+++|.|++... ..+.+...+..    .  + +--++.||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~----~--~-~~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA----S--K-IGTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH----C--T-TEEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc----c--C-cceEEEecccCCC
Confidence            4678999999643321      11111  12467788999986443 33333333222    1  1 2236679999532


Q ss_pred             CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059          130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINE  162 (198)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (198)
                          ..=.+...+...++|+..++  +|+++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                23455667777899988877  4665543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=2.1e-06  Score=59.49  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=51.6

Q ss_pred             EEEEEEeCCCchhhcc----cchh---hhc-----CCCeEEEEEECCC-hhhHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 048059           59 VKFDIWDTAGQERYHS----LAPM---YYR-----GAAAAVVVYDISN-MDTFNRANKLVQELQRQGNQIVVMALAANKS  125 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~----~~~~---~~~-----~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  125 (198)
                      +.+.|+||+|......    ....   ...     ..+-+++|.|++. .+...++...+..+    +   +--++.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----~---~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV----G---LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS----C---CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc----C---CceEEEeec
Confidence            4578999999532221    1111   122     2467889999854 33444444443332    1   334677999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059          126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN  161 (198)
Q Consensus       126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  161 (198)
                      |....-    =.+...+...++|+..++  +|++++
T Consensus       165 De~~~~----G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTAKG----GVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCTTT----THHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCCCc----cHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            963322    234666777889988777  555553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=1.5e-07  Score=66.11  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ..+++|++|||||||+|+|.+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4679999999999999999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=2.9e-06  Score=58.92  Aligned_cols=91  Identities=14%  Similarity=0.103  Sum_probs=50.9

Q ss_pred             EEEEEEeCCCchhhccc----chhhh---c-----CCCeEEEEEECCCh-hhHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 048059           59 VKFDIWDTAGQERYHSL----APMYY---R-----GAAAAVVVYDISNM-DTFNRANKLVQELQRQGNQIVVMALAANKS  125 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~----~~~~~---~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  125 (198)
                      +.+.|+||+|...+...    ...+.   .     ..+-.++|.|++.. +.+.++...+..   ..    +--++.||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~---~~----~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEA---VN----VTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHH---SC----CCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccc---cC----CceEEEecc
Confidence            45789999995322211    11111   1     14668999998643 233443333322   11    334677999


Q ss_pred             CCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059          126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE  162 (198)
Q Consensus       126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  162 (198)
                      |....-    =.+...+...+.|+..++  +|+++++
T Consensus       167 De~~~~----G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTAKG----GITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCSCT----THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCCcc----cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            953222    235666777889888777  4555543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.11  E-value=1.5e-06  Score=60.17  Aligned_cols=84  Identities=17%  Similarity=0.133  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCchhhccc----chhh--hcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059           59 VKFDIWDTAGQERYHSL----APMY--YRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR  131 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (198)
                      ..+.|+||+|.......    +..+  ..+.+-+++|.|.+..+ ..+.+..+++.+    +   +--+++||.|.... 
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~---~~~~I~TKlDe~~~-  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G---VTGLVLTKLDGDAR-  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C---CCEEEEECGGGCSS-
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C---CCeeEEeecCcccc-
Confidence            46789999996433221    1112  23568889999986543 334333333322    1   22367799995321 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEc
Q 048059          132 EVPTEEGEQFSQENGMFYIETS  153 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~S  153 (198)
                         .=.+..++...+.|+..++
T Consensus       165 ---~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         165 ---GGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             ---CHHHHHHHHHHCCCEEEEC
T ss_pred             ---chHHHHHHHHHCCCEEEEe
Confidence               2445666777888887765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=2.1e-06  Score=62.22  Aligned_cols=88  Identities=10%  Similarity=0.057  Sum_probs=60.4

Q ss_pred             chhhhcCCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 048059           76 APMYYRGAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETS  153 (198)
Q Consensus        76 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  153 (198)
                      ....+..+|++|+|.|+.+|.+..  .++.++        .+.|.++|+||+|+.....  .+...++....+...+.+|
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~--------~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCHHHHHHH--------cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceee
Confidence            445788999999999999887653  222222        3569999999999864221  1222333334467899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHh
Q 048059          154 AKTAQNINELFYEIAKRLAR  173 (198)
Q Consensus       154 a~~~~~i~~~~~~l~~~~~~  173 (198)
                      +.++.+...+...+.+.+.+
T Consensus        79 a~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCccccchhhhhhhhh
Confidence            99999988777776655443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.03  E-value=7.6e-07  Score=62.51  Aligned_cols=85  Identities=12%  Similarity=0.122  Sum_probs=58.6

Q ss_pred             hhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH---HHHHHcCCeEEEEcc
Q 048059           79 YYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE---QFSQENGMFYIETSA  154 (198)
Q Consensus        79 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~Sa  154 (198)
                      ...|.|.+++|+++.+|. ++..+++++-....   .+.+.+||+||+|+....+. .+...   +.....+.+++.+|+
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~-~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDT-EDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHH-HHHHHHHHHHHhhccccceeeec
Confidence            457899999999987764 45666666544332   45688899999998643221 12222   233456899999999


Q ss_pred             CCCCCHHHHHHHH
Q 048059          155 KTAQNINELFYEI  167 (198)
Q Consensus       155 ~~~~~i~~~~~~l  167 (198)
                      +++.|++++..+|
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999888776543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=0.00013  Score=50.85  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      ++|-|--|||||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            678899999999999999875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.94  E-value=2.4e-06  Score=57.16  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.0

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .++.++|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            45678999999999999999998875

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.88  E-value=3.1e-06  Score=57.07  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -+|+|.|++|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999986

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.80  E-value=5.6e-06  Score=56.38  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +.++|+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999988874

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.78  E-value=4.7e-06  Score=55.49  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.+|+|.|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=8.3e-06  Score=54.95  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.71  E-value=9.6e-06  Score=52.93  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |++.|+|||||||++++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=9.9e-06  Score=53.73  Aligned_cols=20  Identities=40%  Similarity=0.509  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|+|.+|||||||+++|..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            88999999999999999985

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=1.2e-05  Score=54.27  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.68  E-value=1.2e-05  Score=54.39  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ++|+|+|+|||||||+++.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.66  E-value=1.4e-05  Score=54.40  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.1

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..-++|+|+|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3458999999999999999998875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.5e-05  Score=53.66  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.61  E-value=2e-05  Score=53.66  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..-|+|+|+|||||||+++.|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.61  E-value=1.6e-05  Score=52.76  Aligned_cols=20  Identities=25%  Similarity=0.531  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|.|++||||||++++|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=1.8e-05  Score=53.42  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.58  E-value=1.4e-05  Score=54.25  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .++|+|+|+|||||||+++.|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999988764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=1.9e-05  Score=51.83  Aligned_cols=21  Identities=29%  Similarity=0.714  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      +|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.53  E-value=2.9e-05  Score=51.76  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...+-|.+.|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3458899999999999999988764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.47  E-value=3e-05  Score=53.28  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=3.1e-05  Score=51.90  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...=|+++|.|||||||+++++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.9e-05  Score=52.14  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +.|+|+|+|||||||....|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999988864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.45  E-value=3.6e-05  Score=50.99  Aligned_cols=20  Identities=25%  Similarity=0.454  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999998875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=7.8e-05  Score=53.72  Aligned_cols=61  Identities=18%  Similarity=0.104  Sum_probs=38.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQ-----QEPTIGAAFFTQILSLSEATVKFDIWDTAGQER   71 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   71 (198)
                      -.=|.|+|+.++|||+|+|.|++....-.     ...|.|.-.....+ ..+....+.++||.|...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            45688999999999999999997553211     12344432222211 133455688999999643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.43  E-value=3.4e-05  Score=51.06  Aligned_cols=21  Identities=43%  Similarity=0.748  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=2.4e-05  Score=52.77  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|+||+||||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999853

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=3.4e-05  Score=51.14  Aligned_cols=22  Identities=41%  Similarity=0.649  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .||+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999887764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4.7e-05  Score=50.88  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=0.00026  Score=46.35  Aligned_cols=25  Identities=36%  Similarity=0.619  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ..-|++-|+-|||||||++.+...-
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            4568899999999999999988643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5.4e-05  Score=50.10  Aligned_cols=20  Identities=35%  Similarity=0.591  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      ++|.|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66799999999999999875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=5.6e-05  Score=51.19  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|+||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.34  E-value=6.2e-05  Score=49.98  Aligned_cols=20  Identities=35%  Similarity=0.617  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|.|++||||||+.+.|..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999988865

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=5.7e-05  Score=51.43  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|+|+|||||||++..|..
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.32  E-value=5.9e-05  Score=50.49  Aligned_cols=20  Identities=25%  Similarity=0.338  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=6e-05  Score=53.19  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      =+|+|+|++|||||||++.+.+-
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999888763

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.30  E-value=5.4e-05  Score=55.81  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      .+|+|.|++|||||||+++|+...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            579999999999999999998643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=7e-05  Score=50.41  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|+||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            688999999999999998753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.28  E-value=7.2e-05  Score=50.87  Aligned_cols=21  Identities=19%  Similarity=0.499  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998875

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.26  E-value=7.9e-05  Score=49.39  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999988763

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.24  E-value=8.2e-05  Score=51.55  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..+.|+|-|||||||||+...|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=9.1e-05  Score=50.30  Aligned_cols=20  Identities=35%  Similarity=0.659  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|+||+|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999998865

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.22  E-value=9.3e-05  Score=49.21  Aligned_cols=20  Identities=20%  Similarity=0.531  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+++|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999988864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.21  E-value=9.4e-05  Score=52.20  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      =.++|+|++|||||||++.+.+
T Consensus        29 e~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988876

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.21  E-value=0.0001  Score=50.48  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++++|+.|||||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            36899999999999999988743

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=5.8e-05  Score=51.04  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...-|++.|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999998864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.21  E-value=9.4e-05  Score=52.56  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .++|+|++|||||||++.|.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999988876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=9.8e-05  Score=51.66  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++++|++|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988763

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.18  E-value=0.00012  Score=52.13  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-|++.|+||+|||||++++.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999998764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0001  Score=52.25  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .++|+|++|||||||++.+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999988876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.17  E-value=9.7e-05  Score=51.63  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -++++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999877663

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.16  E-value=0.00011  Score=49.55  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+=|+|-|++|||||||+++|..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56689999999999999998864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.15  E-value=0.00012  Score=51.39  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ++++|++|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999888743

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00013  Score=52.68  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .++|+|++|||||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999988874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00012  Score=50.31  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|+||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            688999999999999999863

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.12  E-value=0.00013  Score=51.16  Aligned_cols=23  Identities=39%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -+.++|++|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999888743

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00018  Score=48.82  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +-+++++|+||+|||+++..|..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            45899999999999999988775

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.07  E-value=0.00015  Score=50.91  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -+.++|++|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999888643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00014  Score=51.11  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4689999999999999888763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.00016  Score=50.65  Aligned_cols=23  Identities=39%  Similarity=0.544  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -.+++.||||+||||+++.+...
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.04  E-value=0.00011  Score=51.35  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ++++|++|||||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7899999999999999988743

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.02  E-value=0.00016  Score=50.88  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36899999999999999998743

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.02  E-value=0.00019  Score=48.10  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=17.4

Q ss_pred             EEE-EEcCCCCCHHHHHHHHHh
Q 048059           12 KLV-LLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~-v~G~~~sGKssli~~l~~   32 (198)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            565 569999999999988864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.00019  Score=50.27  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+++.||||+||||+++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            5899999999999999988753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00013  Score=51.10  Aligned_cols=20  Identities=40%  Similarity=0.625  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      +.++|+.|+|||||++.+.+
T Consensus        28 ~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            78999999999999999987

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.97  E-value=0.00026  Score=49.70  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36799999999999999988744

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00025  Score=50.70  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-+++++|+||+|||+++..|..
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHH
Confidence            45899999999999999998775

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.96  E-value=0.00032  Score=49.54  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...|++.|+||+|||++++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            46799999999999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.95  E-value=0.00011  Score=52.12  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      =+++|+|++|||||||++.+.+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            3689999999999999977665

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.91  E-value=0.00024  Score=50.56  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -+.|+|++|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999988763

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.89  E-value=0.00027  Score=51.71  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.++++||||+|||.|++++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            357899999999999999998863

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.88  E-value=0.00025  Score=50.34  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhCC
Q 048059           13 LVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~~   34 (198)
                      +.++|+.|||||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6899999999999999998743

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00035  Score=48.01  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36689999999999999998864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.83  E-value=0.00031  Score=47.58  Aligned_cols=28  Identities=25%  Similarity=0.431  Sum_probs=23.5

Q ss_pred             CCceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            5 GNKIIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         5 ~~~~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ......+-|+|-|..||||||+++.|..
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            3455668899999999999999988764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.83  E-value=0.00015  Score=50.99  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999988874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00034  Score=48.13  Aligned_cols=21  Identities=24%  Similarity=0.408  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      =|+|.|||||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367779999999999988764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.80  E-value=0.00036  Score=48.50  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+++.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.00042  Score=48.72  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -.+++.||||+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998863

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.00039  Score=53.33  Aligned_cols=22  Identities=36%  Similarity=0.714  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      =||+++||+|||||-|+++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999875

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.69  E-value=0.00052  Score=48.47  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.++|.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.67  E-value=0.00037  Score=49.60  Aligned_cols=21  Identities=38%  Similarity=0.466  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999988753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.00055  Score=48.34  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.|++.|+||+|||+|++++..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3589999999999999999986

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.63  E-value=0.00063  Score=46.69  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +...-|.+.|.||||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999998864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.60  E-value=0.00057  Score=48.37  Aligned_cols=21  Identities=33%  Similarity=0.275  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999998874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.53  E-value=0.0011  Score=44.61  Aligned_cols=23  Identities=22%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ++=|+|.|.+||||||+++.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999988764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.00084  Score=47.62  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .-.|++.||||+|||++++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            346999999999999999998863

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00076  Score=46.83  Aligned_cols=22  Identities=41%  Similarity=0.597  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3899999999999999888753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00087  Score=47.51  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.+++.||||+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4599999999999999999885

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.0008  Score=46.49  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999988764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00071  Score=47.45  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+++.|++|+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999988764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.0009  Score=46.24  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .+++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999988763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.27  E-value=0.0013  Score=44.72  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999987764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0017  Score=47.18  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ....+=|+|.|++|||||||.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            34568899999999999999887753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.00086  Score=50.42  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +-+++++|+||||||+++..|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            45689999999999999976654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0011  Score=47.20  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      -.|++.|++|+|||+|++++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            46999999999999999999863

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0025  Score=45.73  Aligned_cols=25  Identities=16%  Similarity=0.290  Sum_probs=20.5

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHH
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~   31 (198)
                      +...+=|+|.|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            4456789999999999999987653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.02  E-value=0.0016  Score=48.53  Aligned_cols=24  Identities=33%  Similarity=0.617  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +.-+++++||+|||||-|+++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            456799999999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0021  Score=43.53  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      =+.|.|+||+|||+|+..+....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999998887543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0022  Score=43.74  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.89  E-value=0.0031  Score=41.82  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ..-|++.|++|+||||++-.|....
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3568999999999999998888644

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0032  Score=42.90  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      +=|+|.|.+||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45889999999999999877643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.81  E-value=0.0034  Score=41.66  Aligned_cols=25  Identities=32%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ..-|++.|++|+||||++-.|....
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            3568999999999999998887543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0035  Score=45.66  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +.-.++++||+|+|||.|++.|..
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHh
Confidence            334689999999999999998875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.74  E-value=0.0029  Score=47.07  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      --+++.||||+|||+|+..+..
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.69  E-value=0.0031  Score=43.88  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -=++|.|+||+|||+|.-.++...
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            347899999999999998887533

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.69  E-value=0.0014  Score=48.13  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|++.|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.67  E-value=0.0041  Score=42.21  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +=|+|.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5588999999999999987753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0034  Score=42.88  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998877654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.01  Score=40.86  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhCC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      -++|.|+||+|||+|+..+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999998887543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.00055  Score=46.13  Aligned_cols=18  Identities=33%  Similarity=0.606  Sum_probs=16.0

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 048059           14 VLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        14 ~v~G~~~sGKssli~~l~   31 (198)
                      +|+|+.|||||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999999875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.57  E-value=0.0038  Score=42.78  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      +.+.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.55  E-value=0.0038  Score=44.56  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-|+|.|..|+|||||+..+..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999998765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.51  E-value=0.0053  Score=40.42  Aligned_cols=25  Identities=36%  Similarity=0.577  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKGQ   34 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~~   34 (198)
                      ..-|++.|++|+||||+.-.|....
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            4579999999999999998887654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.48  E-value=0.004  Score=46.97  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      =|+|.|++||||||.+..++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            4899999999999999998874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0023  Score=44.38  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999987765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.45  E-value=0.0044  Score=42.93  Aligned_cols=24  Identities=38%  Similarity=0.631  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      .--++|.|+||+|||+|+.++...
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            345789999999999999888754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.44  E-value=0.23  Score=34.43  Aligned_cols=113  Identities=17%  Similarity=0.183  Sum_probs=63.8

Q ss_pred             EEEEEEeCCCchhhcc-cchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC-CCce-EEEEEeCCCCCCCCCCCH
Q 048059           59 VKFDIWDTAGQERYHS-LAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVV-MALAANKSDLDSQREVPT  135 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-~iiv~nK~Dl~~~~~~~~  135 (198)
                      +.+.++|+|+.-.... .......-+|.++++.+. +..++..+......+..... .+.+ .-++.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            4577899986432222 122222457888877765 56677766666666655332 2223 3477899885432    3


Q ss_pred             HHHHHHHHHcCCeEEEEc---------cCCC---------CCHHHHHHHHHHHHHhhCC
Q 048059          136 EEGEQFSQENGMFYIETS---------AKTA---------QNINELFYEIAKRLARVSP  176 (198)
Q Consensus       136 ~~~~~~~~~~~~~~~~~S---------a~~~---------~~i~~~~~~l~~~~~~~~~  176 (198)
                      +..+++++..+.+++.+=         ...|         ......|..|.+.+.+...
T Consensus       191 ~~~~~~~~~~~~~~~~~IP~d~~i~~a~~~g~~v~~~~p~s~~a~~~~~La~~i~~~~~  249 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDPTCEQAEEYRELARKVDANEL  249 (269)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCC
T ss_pred             chhhhhHhhcCCeEEEEEecCHHHHHHHHCCCCeEEECcCCHHHHHHHHHHHHHHcCCC
Confidence            556777777777654321         1112         2344566777777776543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.36  E-value=0.0047  Score=45.25  Aligned_cols=27  Identities=33%  Similarity=0.453  Sum_probs=23.6

Q ss_pred             ceeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059            7 KIIQAKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus         7 ~~~~~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      ++..++|.|=|+-||||||+++.|...
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999998763

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.33  E-value=0.0019  Score=46.39  Aligned_cols=20  Identities=20%  Similarity=0.483  Sum_probs=15.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|.|.+||||||+.++|..
T Consensus         7 IgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEESCC---CCTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999987653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.33  E-value=0.0054  Score=44.66  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      +++.|+||+|||.|++.|.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999998863

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.26  E-value=0.0029  Score=45.54  Aligned_cols=18  Identities=22%  Similarity=0.464  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 048059           14 VLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        14 ~v~G~~~sGKssli~~l~   31 (198)
                      +++|+.|||||+++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            688999999999999874

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.15  E-value=0.0061  Score=42.06  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHhC
Q 048059           12 KLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~~   33 (198)
                      =++|.|+||+|||+|+..+...
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.0068  Score=41.24  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999997765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0065  Score=42.04  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999998875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.01  E-value=0.0059  Score=45.73  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=17.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHH
Q 048059           10 QAKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~   31 (198)
                      .++ +|+|+.|||||+++.++.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            354 477999999999999874

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0075  Score=41.80  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      --++|.|+||+|||+|...+...
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999988753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.91  E-value=0.0081  Score=41.72  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      .+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999987764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.80  E-value=0.014  Score=42.73  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..-++|.|=|+-||||||+++.|..
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CceEEEEEECCccCCHHHHHHHHHH
Confidence            3458999999999999999998875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.78  E-value=0.0089  Score=40.87  Aligned_cols=21  Identities=33%  Similarity=0.657  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 048059           11 AKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~   31 (198)
                      --+.|.|+||+|||+|+..++
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            457889999999999987665

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.66  E-value=0.0098  Score=42.06  Aligned_cols=20  Identities=15%  Similarity=0.313  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999887764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.53  E-value=0.0083  Score=40.49  Aligned_cols=23  Identities=35%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +--+++.|++++|||.|+..|..
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            35689999999999999998875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.50  E-value=0.012  Score=40.21  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      |+|-|.-||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999987764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.43  E-value=0.013  Score=40.55  Aligned_cols=21  Identities=24%  Similarity=0.229  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999988854

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.31  E-value=0.014  Score=42.35  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -.++++|++|+|||.+++.|..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHH
Confidence            3578889999999999988764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.28  E-value=0.01  Score=42.81  Aligned_cols=15  Identities=33%  Similarity=0.713  Sum_probs=13.4

Q ss_pred             EEEEcCCCCCHHHHH
Q 048059           13 LVLLGDMGTGKTSLA   27 (198)
Q Consensus        13 i~v~G~~~sGKssli   27 (198)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.26  E-value=0.015  Score=42.48  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      .-++|.|=|+-||||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            347899999999999999988863

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.22  E-value=0.0084  Score=42.87  Aligned_cols=15  Identities=33%  Similarity=0.605  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 048059           13 LVLLGDMGTGKTSLA   27 (198)
Q Consensus        13 i~v~G~~~sGKssli   27 (198)
                      ++|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.015  Score=40.88  Aligned_cols=19  Identities=37%  Similarity=0.490  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 048059           13 LVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~   31 (198)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999987765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.016  Score=43.72  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..++|+|.+|||||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4589999999999999887764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.022  Score=40.67  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      =|++|+|++|+|||+|+..+..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            4899999999999999988775

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.41  E-value=0.029  Score=34.43  Aligned_cols=25  Identities=12%  Similarity=0.223  Sum_probs=22.0

Q ss_pred             eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            8 IIQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         8 ~~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ...+.|++-|.+|+|||+|.++|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4468999999999999999998864

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.10  E-value=0.03  Score=39.53  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHHh
Q 048059           10 QAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      +--+.+.|++++|||+|++.+..
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHH
Confidence            45678889999999999998875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.035  Score=40.99  Aligned_cols=19  Identities=37%  Similarity=0.517  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 048059           12 KLVLLGDMGTGKTSLALRF   30 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l   30 (198)
                      -.+|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4788999999999987553

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.89  E-value=0.05  Score=37.87  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ..|+|.|++|+||+.+++.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4589999999999999987754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.87  E-value=0.42  Score=31.12  Aligned_cols=102  Identities=8%  Similarity=0.046  Sum_probs=56.2

Q ss_pred             ceeeeEEEEEcC-CCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-------------
Q 048059            7 KIIQAKLVLLGD-MGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-------------   72 (198)
Q Consensus         7 ~~~~~~i~v~G~-~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------------   72 (198)
                      ....+||.|+|. .++|- +|+..|..+......                 ..+.+.+.|.+.....             
T Consensus        21 ~k~~~kV~I~GA~G~Ig~-~l~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~   82 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISN-HLLFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLY   82 (175)
T ss_dssp             CCCCEEEEEETTTSHHHH-HHHHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTC
T ss_pred             cCCCcEEEEECCCcHHHH-HHHHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhccccc
Confidence            345689999997 45564 555567665432111                 1234556665542100             


Q ss_pred             --------cccchhhhcCCCeEEEEEECCChh--hH--------HHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059           73 --------HSLAPMYYRGAAAAVVVYDISNMD--TF--------NRANKLVQELQRQGNQIVVMALAANKSD  126 (198)
Q Consensus        73 --------~~~~~~~~~~~d~~i~v~d~~~~~--s~--------~~~~~~~~~~~~~~~~~~p~iiv~nK~D  126 (198)
                              .......+.++|++|++.......  +-        .-+..+.+.+..++.++.-+++++|-.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          83 PLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             ccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                    111233467899999987553221  11        1223455556666666677778877666

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.84  E-value=0.04  Score=36.41  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhC
Q 048059           13 LVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~~   33 (198)
                      |+|+|...||||.++.++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998743

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.65  E-value=0.066  Score=37.86  Aligned_cols=23  Identities=39%  Similarity=0.677  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      =|++++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            47999999999999998888653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.068  Score=37.56  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHh
Q 048059           12 KLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        12 ~i~v~G~~~sGKssli~~l~~   32 (198)
                      =+.|.|++++|||+|+-.+..
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            367899999999999877664

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.01  E-value=0.069  Score=33.63  Aligned_cols=17  Identities=41%  Similarity=0.555  Sum_probs=13.4

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 048059           14 VLLGDMGTGKTS-LALRF   30 (198)
Q Consensus        14 ~v~G~~~sGKss-li~~l   30 (198)
                      +++||-.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            568999999999 55544

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.99  E-value=1.2  Score=29.65  Aligned_cols=76  Identities=16%  Similarity=0.192  Sum_probs=48.5

Q ss_pred             EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCCCCCCCCHHH
Q 048059           59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMA-LAANKSDLDSQREVPTEE  137 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~  137 (198)
                      +.+.++|+++...  ......+..+|.++++... +..++..+......+.+.   +.|++ +|.|+.+... .....+.
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEccccccc--ccchhhhhhhhcccccccc-cceecchhhHHHHHHhhh---hhhhhhhhhccccccc-chhhhHH
Confidence            5688999987532  2344456679999999875 456677776666666543   34543 7889998643 3344444


Q ss_pred             HHHH
Q 048059          138 GEQF  141 (198)
Q Consensus       138 ~~~~  141 (198)
                      .+++
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4443

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.90  E-value=0.08  Score=32.79  Aligned_cols=22  Identities=18%  Similarity=0.135  Sum_probs=16.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      -..+|.+++|+|||.++-.+..
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH
Confidence            3457799999999998865543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.61  E-value=0.072  Score=38.23  Aligned_cols=14  Identities=57%  Similarity=0.871  Sum_probs=12.8

Q ss_pred             EEEcCCCCCHHHHH
Q 048059           14 VLLGDMGTGKTSLA   27 (198)
Q Consensus        14 ~v~G~~~sGKssli   27 (198)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999975

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.19  E-value=0.081  Score=38.09  Aligned_cols=15  Identities=53%  Similarity=0.787  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q 048059           13 LVLLGDMGTGKTSLA   27 (198)
Q Consensus        13 i~v~G~~~sGKssli   27 (198)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999974

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.73  E-value=0.092  Score=37.82  Aligned_cols=14  Identities=57%  Similarity=0.871  Sum_probs=13.0

Q ss_pred             EEEcCCCCCHHHHH
Q 048059           14 VLLGDMGTGKTSLA   27 (198)
Q Consensus        14 ~v~G~~~sGKssli   27 (198)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999986

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.21  E-value=0.11  Score=36.81  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHh
Q 048059           11 AKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~   32 (198)
                      =|++++|.+|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            4789999999999999877664

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.20  E-value=0.16  Score=34.88  Aligned_cols=19  Identities=21%  Similarity=0.284  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 048059           13 LVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~   31 (198)
                      ++|-|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6889999999999998764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.68  E-value=0.18  Score=34.41  Aligned_cols=19  Identities=16%  Similarity=0.279  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHH
Q 048059           13 LVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~   31 (198)
                      ++|-|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            7899999999999998754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.23  E-value=0.19  Score=35.19  Aligned_cols=40  Identities=20%  Similarity=0.138  Sum_probs=24.3

Q ss_pred             CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059           84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSD  126 (198)
Q Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  126 (198)
                      ..+++|-.. ++.++.+..+.++.+....-+  ...+|+|+.-
T Consensus       199 t~~~lVt~p-e~~~~~~~~r~~~~l~~~gi~--~~~vVvN~v~  238 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEVARTHLELAAIGLK--NQYLVINGVL  238 (296)
T ss_dssp             EEEEEEEES-CHHHHHHHHHHHHHHHHHTCC--CEEEEEEEEC
T ss_pred             ceeeEecCc-chhHHHHHHHHHHHHHhcCCC--ceEEEEcCCc
Confidence            345666544 456677777777777765321  2356679864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.53  E-value=0.22  Score=33.14  Aligned_cols=24  Identities=8%  Similarity=0.095  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059            9 IQAKLVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus         9 ~~~~i~v~G~~~sGKssli~~l~~   32 (198)
                      ....+++-|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988775

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.51  E-value=0.23  Score=34.80  Aligned_cols=20  Identities=35%  Similarity=0.503  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      +.+.|++++|||+|+-.+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            56899999999999877664

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.33  E-value=0.19  Score=35.48  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHhC
Q 048059           11 AKLVLLGDMGTGKTSLALRFIKG   33 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~~~   33 (198)
                      =|++|+|.+|+|||+|+..+...
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            46889999999999998765543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.29  E-value=0.27  Score=32.66  Aligned_cols=64  Identities=13%  Similarity=0.052  Sum_probs=35.5

Q ss_pred             CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 048059           83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIE  151 (198)
Q Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ...+++|.+.... ...........+...  .....-+|.|+.|...  ....+..+.+.+.++++++-
T Consensus       138 ~~~v~~V~~~~~~-~~~~~~~~~~~~~~~--~~~~~gvv~N~~~~~~--~~~~~~~~~l~~~~gi~vlG  201 (224)
T d1byia_         138 QLPVILVVGVKLG-CINHAMLTAQVIQHA--GLTLAGWVANDVTPPG--KRHAEYMTTLTRMIPAPLLG  201 (224)
T ss_dssp             TCCEEEEEECSTT-HHHHHHHHHHHHHHT--TCCEEEEEEECCSSCC--TTHHHHHHHHHHHSSSCEEE
T ss_pred             cceeeEEEeeccc-hhHHHHHHHHHHhcc--CCccEEEEEeCcCCCc--hHHHHHHHHHHHHhCCCEEE
Confidence            3455566665443 333333344444443  3345678889988432  33345566667777888764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.77  E-value=0.26  Score=34.54  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q 048059           13 LVLLGDMGTGKTSLALRFIK   32 (198)
Q Consensus        13 i~v~G~~~sGKssli~~l~~   32 (198)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999866653

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.65  E-value=0.25  Score=32.50  Aligned_cols=16  Identities=31%  Similarity=0.432  Sum_probs=13.4

Q ss_pred             EEEEEcCCCCCHHHHH
Q 048059           12 KLVLLGDMGTGKTSLA   27 (198)
Q Consensus        12 ~i~v~G~~~sGKssli   27 (198)
                      ++++++++|+|||.+.
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5789999999999643

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.3  Score=33.98  Aligned_cols=20  Identities=40%  Similarity=0.674  Sum_probs=14.4

Q ss_pred             eEEE-EEcCCCCCHHHHHHHH
Q 048059           11 AKLV-LLGDMGTGKTSLALRF   30 (198)
Q Consensus        11 ~~i~-v~G~~~sGKssli~~l   30 (198)
                      .+|+ +.|.-|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            4444 4599999999985444

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.51  E-value=0.42  Score=33.47  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=62.0

Q ss_pred             EEEEEEeCCCchhhcccchhh-hcCCCeEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceE-EEEEeCCCCCCCCCCCH
Q 048059           59 VKFDIWDTAGQERYHSLAPMY-YRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVM-ALAANKSDLDSQREVPT  135 (198)
Q Consensus        59 ~~~~l~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~-iiv~nK~Dl~~~~~~~~  135 (198)
                      +.+.++|+|+........... ...++.++++.. .+..++..+......+... .....++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            456788887653222222222 134666666644 4555666665555555442 2233443 47789877422    23


Q ss_pred             HHHHHHHHHcCCeEEEEcc---------CC---------CCCHHHHHHHHHHHHHhhCCC
Q 048059          136 EEGEQFSQENGMFYIETSA---------KT---------AQNINELFYEIAKRLARVSPP  177 (198)
Q Consensus       136 ~~~~~~~~~~~~~~~~~Sa---------~~---------~~~i~~~~~~l~~~~~~~~~~  177 (198)
                      +....+++.++.+++.+=.         ..         +....+.|..|.+.+.++...
T Consensus       194 ~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~~  253 (289)
T d2afhe1         194 ELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLL  253 (289)
T ss_dssp             HHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCCC
Confidence            4456677777776554211         11         123456688888888876654

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=0.48  Score=29.27  Aligned_cols=18  Identities=39%  Similarity=0.610  Sum_probs=14.5

Q ss_pred             EEEcCCCCCHHHHHHHHH
Q 048059           14 VLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        14 ~v~G~~~sGKssli~~l~   31 (198)
                      +++|+-.|||||-+-+..
T Consensus         6 li~GpMfsGKTt~Li~~~   23 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRV   23 (133)
T ss_dssp             EEECCTTSCHHHHHHHHH
T ss_pred             EEEecccCHHHHHHHHHH
Confidence            568999999999766544

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=82.04  E-value=0.17  Score=30.93  Aligned_cols=17  Identities=35%  Similarity=0.206  Sum_probs=13.5

Q ss_pred             eeEEEEEcCCCCCHHHH
Q 048059           10 QAKLVLLGDMGTGKTSL   26 (198)
Q Consensus        10 ~~~i~v~G~~~sGKssl   26 (198)
                      .-++++.+++|+|||..
T Consensus         7 ~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TCEEEECCCTTSSTTTT
T ss_pred             CCcEEEEcCCCCChhHH
Confidence            34678889999999944

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.00  E-value=2.6  Score=26.36  Aligned_cols=50  Identities=12%  Similarity=0.074  Sum_probs=29.8

Q ss_pred             hhhhcCCCeEEEEEECCChhh----------HHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059           77 PMYYRGAAAAVVVYDISNMDT----------FNRANKLVQELQRQGNQIVVMALAANKSD  126 (198)
Q Consensus        77 ~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  126 (198)
                      ...+.++|++|+.......+.          ..-+..+...+..+++++.-++++.|-+|
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            345788999999876542211          12233455555556555566667776666

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.50  E-value=0.61  Score=29.12  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=15.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q 048059           11 AKLVLLGDMGTGKTSLALRFI   31 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli~~l~   31 (198)
                      +.+ ++|+-.|||||-+-+..
T Consensus         9 l~l-I~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           9 VEV-IVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             EEE-EECSTTSSHHHHHHHHH
T ss_pred             EEE-EEeccccHHHHHHHHHH
Confidence            444 58999999999765544

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.45  E-value=0.17  Score=33.58  Aligned_cols=17  Identities=41%  Similarity=0.430  Sum_probs=14.3

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 048059           11 AKLVLLGDMGTGKTSLA   27 (198)
Q Consensus        11 ~~i~v~G~~~sGKssli   27 (198)
                      -++++.+++|+|||...
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            36899999999999763