Citrus Sinensis ID: 048078

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
SNFFSLHSGLVEDEKTKEMNSSLMIRRFFCFKGPATSSTTPSAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWNGLRGQKLKVL
ccccccccccccccHHHHccccHHHccEEEcccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHccccEEEEEEccccccHHHHcccccccEEEccccccccccHHHHHHHHHccccHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEccccccccccccEEEEEEEEEEccccccccccEEEEEcccEEEEcccccEEEEEEEcccccccccHHHHHccccccccccc
ccccEcccccHHHHHcccccHHHHHHHHEEEcccccccccccccccccccEEEEEccHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccEccccHHHHHHHHcccccccEcccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHcccccEEEEEcccccccEcccHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcccHcHHHHHHHHHccHHHHcccccccHHHHHHHHHccccccEEEEEEcccEEEEEEEEcccEEEEEEEEcccccccccEEEEEccccEEEEEccccEEEEEEccccccccccHHHHHHcccccccccc
snffslhsglvedektkEMNSSLMIRRFFcfkgpatssttpsafsvsrkkplvflgspqvsVNVLDALfnassspdsIFEVAAIvtqppsrrdrgrkvlpspvaqyaldrgfpadliftperageDAFLSNLRALQPELCITAaygnilpskflnippmgtvnihpsllplyrgaapvqralqggakeTGVSLAFTVRAldagpviarekmevddqikAPELLVLLFSEGSELLIRELpsildgsarvkaqpqddskatlapkitteeswlsFDEEAVVLHNKVRafagwpgtrakmavvddrngqqsIVELKIIttrvcpniqtnevdgitfkkdalvvpcgectaLEVLEVQLPGKKAVSAAAFWNGLRGQKLKVL
snffslhsglvedektkEMNSSLMIRRFFCFKGPATSSTTPSAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIvtqppsrrdrgrkvlpspvaqyaldrgfPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILdgsarvkaqpqddskatlapkitteeswLSFDEEAVVLHNKVRafagwpgtrAKMAVVDDRNGQQSIVElkiittrvcpniqtnevdgitFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAfwnglrgqklkvl
SNFFSLHSGLVEDEKTKEMNSSLMIRRFFCFKGpatssttpsaFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWNGLRGQKLKVL
**********************LMIRRFFCFKG****************KPLVFLGSPQVSVNVLDALFNAS****SIFEVAAIV****************PVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSIL**********************TTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWNGLR*******
**FFSLHSGLV***********LMIRRFFCFK********************VFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIIT***************TFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWNGLRGQKLKVL
SNFFSLHSGLVEDEKTKEMNSSLMIRRFFCFKGP************SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSA*************LAPKITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWNGLRGQKLKVL
******HSGLVEDEKT*EMNSSLMIRRFFCFKGP************SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKK**S****************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SNFFSLHSGLVEDEKTKEMNSSLMIRRFFCFKGPATSSTTPSAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWNGLRGQKLKVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
Q65JS5316 Methionyl-tRNA formyltran yes no 0.785 0.939 0.369 2e-48
C5CG19311 Methionyl-tRNA formyltran yes no 0.783 0.951 0.344 7e-45
B9DPM5310 Methionyl-tRNA formyltran yes no 0.801 0.977 0.331 9e-45
B5YF45312 Methionyl-tRNA formyltran yes no 0.785 0.951 0.338 8e-44
B8E0X6314 Methionyl-tRNA formyltran yes no 0.785 0.945 0.344 1e-43
Q2RK24311 Methionyl-tRNA formyltran yes no 0.783 0.951 0.366 2e-43
Q0AXL4314 Methionyl-tRNA formyltran yes no 0.777 0.936 0.348 3e-43
B2V969311 Methionyl-tRNA formyltran yes no 0.788 0.958 0.336 5e-43
Q5FJH5314 Methionyl-tRNA formyltran yes no 0.798 0.961 0.342 6e-43
A1ALC4319 Methionyl-tRNA formyltran yes no 0.769 0.912 0.340 1e-42
>sp|Q65JS5|FMT_BACLD Methionyl-tRNA formyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=fmt PE=3 SV=1 Back     alignment and function desciption
 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 175/319 (54%), Gaps = 22/319 (6%)

Query: 52  LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG 111
           +VF+G+P  SV VL  L       D  +EV  +VTQP   + R + + P PV + AL RG
Sbjct: 4   IVFMGTPDFSVPVLGTLI------DDGYEVVGVVTQPDRPKGRKKVMTPPPVKEEALRRG 57

Query: 112 FPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPL 171
            P   +  PE+  E+A    + AL+P+L +TAA+G ILP K L+ P  G +N+H SLLP 
Sbjct: 58  IP---VLQPEKVREEAETDKILALEPDLIVTAAFGQILPKKLLDYPKYGCINVHASLLPE 114

Query: 172 YRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGS 231
            RG AP+  A+  G ++TGV++ + V  LDAG ++A+ ++++++      L   L   G+
Sbjct: 115 LRGGAPIHYAILEGKEKTGVTIMYMVEKLDAGDMLAKVEVDIEETDNVGTLHDKLSKAGA 174

Query: 232 ELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWP 291
            LL   +P I+DGS  V  + QD+ KAT AP I  E+  + + +   VL+N+VR    WP
Sbjct: 175 ALLSETVPRIIDGS--VTPEKQDEQKATYAPNIKREQELIDWSKPGEVLYNQVRGLNPWP 232

Query: 292 GTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGI-TFKKDALVVPCGECTALEV 350
                +      NGQ     LK+   + C  ++  E   I T +KD +VV  G  TAL++
Sbjct: 233 VAYTVL------NGQT----LKVWAAKKCQALKQAEPGEIVTVEKDGIVVATGNDTALKL 282

Query: 351 LEVQLPGKKAVSAAAFWNG 369
            EVQ  GKK + A  F  G
Sbjct: 283 TEVQPAGKKRMKAEDFVRG 301
Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by: (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP.
Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 9
>sp|C5CG19|FMT_KOSOT Methionyl-tRNA formyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|B9DPM5|FMT_STACT Methionyl-tRNA formyltransferase OS=Staphylococcus carnosus (strain TM300) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|B5YF45|FMT_DICT6 Methionyl-tRNA formyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|B8E0X6|FMT_DICTD Methionyl-tRNA formyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|Q2RK24|FMT_MOOTA Methionyl-tRNA formyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|Q0AXL4|FMT_SYNWW Methionyl-tRNA formyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|B2V969|FMT_SULSY Methionyl-tRNA formyltransferase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|Q5FJH5|FMT_LACAC Methionyl-tRNA formyltransferase OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|A1ALC4|FMT_PELPD Methionyl-tRNA formyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=fmt PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
255574306362 methionyl-tRNA formyltransferase, putati 0.947 0.988 0.797 1e-162
296087189392 unnamed protein product [Vitis vinifera] 0.968 0.933 0.767 1e-159
224069492356 methionyl-trna formyltransferase [Populu 0.936 0.994 0.787 1e-159
225453106365 PREDICTED: methionyl-tRNA formyltransfer 0.952 0.986 0.777 1e-158
297838169355 hypothetical protein ARALYDRAFT_894179 [ 0.931 0.991 0.752 1e-152
15219681355 methionyl-tRNA formyltransferase [Arabid 0.931 0.991 0.740 1e-151
29824361355 putative formyl transferase [Arabidopsis 0.931 0.991 0.738 1e-150
7657875354 Fmt protein [Brassica napus var. napus] 0.928 0.991 0.745 1e-150
449485460368 PREDICTED: methionyl-tRNA formyltransfer 0.933 0.959 0.736 1e-147
449445959368 PREDICTED: methionyl-tRNA formyltransfer 0.933 0.959 0.727 1e-146
>gi|255574306|ref|XP_002528067.1| methionyl-tRNA formyltransferase, putative [Ricinus communis] gi|223532528|gb|EEF34317.1| methionyl-tRNA formyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/361 (79%), Positives = 316/361 (87%), Gaps = 3/361 (0%)

Query: 20  NSSLMIRRFFCFKGPATSSTTPSAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIF 79
           +SSLM+RRF CF   A+ +  P A S S+KKPLVFLGSPQVS  VLDALFNASSSP+SIF
Sbjct: 3   SSSLMLRRFRCFNS-ASVAAVPCASSTSKKKPLVFLGSPQVSTTVLDALFNASSSPNSIF 61

Query: 80  EVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPEL 139
           EVAAIVTQPP+R+ RGRK++PSP AQYALDRGFP DLIFTPERAGED+FL +L+ LQPEL
Sbjct: 62  EVAAIVTQPPARKGRGRKLMPSPAAQYALDRGFPPDLIFTPERAGEDSFLCSLKELQPEL 121

Query: 140 CITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRA 199
           CITAAYGNILP+KFLNIP MG VNIHPSLLPLYRGAAPVQRALQ G KETGVSLAFTVRA
Sbjct: 122 CITAAYGNILPTKFLNIPSMGIVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRA 181

Query: 200 LDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKAT 259
           LDAGPVIA E+++VDDQIKAP+LL LLFSEGS LLI ELPSI DGSAR KA  QDDSKAT
Sbjct: 182 LDAGPVIAHERLDVDDQIKAPDLLALLFSEGSRLLIHELPSIFDGSAREKALLQDDSKAT 241

Query: 260 LAPKITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRV 319
           LAPKIT EESWLSFDEEA VLHNKVRAFAGWPGTRAK+A+VD ++G + I+ELK+ITTRV
Sbjct: 242 LAPKITPEESWLSFDEEASVLHNKVRAFAGWPGTRAKVALVDGKDGNEDIIELKVITTRV 301

Query: 320 CPN--IQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWNGLRGQKLKV 377
           C +   Q NEVD ITF K +LV PCG+ TALEVLEVQLPGKKAVSAAAFWNGLRGQKLK 
Sbjct: 302 CHHGIPQGNEVDDITFLKGSLVFPCGKSTALEVLEVQLPGKKAVSAAAFWNGLRGQKLKK 361

Query: 378 L 378
           L
Sbjct: 362 L 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087189|emb|CBI33563.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224069492|ref|XP_002302984.1| methionyl-trna formyltransferase [Populus trichocarpa] gi|222844710|gb|EEE82257.1| methionyl-trna formyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453106|ref|XP_002270626.1| PREDICTED: methionyl-tRNA formyltransferase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297838169|ref|XP_002886966.1| hypothetical protein ARALYDRAFT_894179 [Arabidopsis lyrata subsp. lyrata] gi|297332807|gb|EFH63225.1| hypothetical protein ARALYDRAFT_894179 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15219681|ref|NP_176825.1| methionyl-tRNA formyltransferase [Arabidopsis thaliana] gi|12322271|gb|AAG51166.1|AC074025_16 formyl transferase, putative [Arabidopsis thaliana] gi|332196399|gb|AEE34520.1| methionyl-tRNA formyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|29824361|gb|AAP04141.1| putative formyl transferase [Arabidopsis thaliana] gi|110738871|dbj|BAF01358.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7657875|emb|CAB89181.1| Fmt protein [Brassica napus var. napus] Back     alignment and taxonomy information
>gi|449485460|ref|XP_004157175.1| PREDICTED: methionyl-tRNA formyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445959|ref|XP_004140739.1| PREDICTED: methionyl-tRNA formyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
TAIR|locus:2029012355 pde194 "pigment defective 194" 0.933 0.994 0.729 2.5e-136
TIGR_CMR|CHY_1483308 CHY_1483 "methionyl-tRNA formy 0.777 0.954 0.343 2e-40
TIGR_CMR|SO_0031318 SO_0031 "methionyl-tRNA formyl 0.798 0.949 0.315 1.5e-35
TIGR_CMR|DET_1642312 DET_1642 "methionyl-tRNA formy 0.785 0.951 0.336 1.1e-34
TIGR_CMR|CBU_1997314 CBU_1997 "methionyl-tRNA formy 0.798 0.961 0.336 1.3e-34
TIGR_CMR|BA_4004314 BA_4004 "methionyl-tRNA formyl 0.798 0.961 0.299 5.8e-34
TIGR_CMR|GSU_0130317 GSU_0130 "methionyl-tRNA formy 0.783 0.933 0.311 7.4e-34
UNIPROTKB|P23882315 fmt "10-formyltetrahydrofolate 0.801 0.961 0.307 2.9e-32
UNIPROTKB|Q9KVU4315 fmt "Methionyl-tRNA formyltran 0.780 0.936 0.303 6e-32
TIGR_CMR|VC_0045315 VC_0045 "methionyl-tRNA formyl 0.780 0.936 0.303 6e-32
TAIR|locus:2029012 pde194 "pigment defective 194" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1335 (475.0 bits), Expect = 2.5e-136, P = 2.5e-136
 Identities = 261/358 (72%), Positives = 304/358 (84%)

Query:    23 LMIRRFFCFKGXXXXXXXXXXFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVA 82
             +++RRF C+                +KKPL+FLGSPQVSV+VL+ALFNAS++P+S FEVA
Sbjct:     1 MILRRFICYNASSTVSSIAPS---PKKKPLIFLGSPQVSVSVLEALFNASNAPNSSFEVA 57

Query:    83 AIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCIT 142
              IVTQPPSRRDRG+KVLPSPVAQYALD+G P+DLIF+PE+AG++AFLS LR LQPELCIT
Sbjct:    58 GIVTQPPSRRDRGKKVLPSPVAQYALDKGLPSDLIFSPEKAGDEAFLSALRELQPELCIT 117

Query:   143 AAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDA 202
             AAYGNILP+KFL IP  GTVNIHPSLLPLYRGAAPVQRALQ G  ETGVSLAFTVR LDA
Sbjct:   118 AAYGNILPTKFLKIPVHGTVNIHPSLLPLYRGAAPVQRALQDGVPETGVSLAFTVRKLDA 177

Query:   203 GPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAP 262
             GPVIA ++ +VDD IKAPELL  LFSEGS LLIRELPSI DGSA+ KA PQDDSKATLAP
Sbjct:   178 GPVIASKRFQVDDLIKAPELLSFLFSEGSNLLIRELPSIFDGSAKSKAAPQDDSKATLAP 237

Query:   263 KITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPN 322
             KI  +E+WLSFD+EA VLHNKVRAFAGWPGTRAK+ V+D+++GQQ+++ELKI++TRVC +
Sbjct:   238 KIAPDEAWLSFDQEAFVLHNKVRAFAGWPGTRAKVVVLDEKSGQQNVLELKIMSTRVCKD 297

Query:   323 --IQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWNGLRGQKLKVL 378
               IQ +E D +TFKK +L+ PC   TALEVLEVQLPGKKA++AAAFWNGLRGQKLK L
Sbjct:   298 LEIQDSEQDYVTFKKGSLIFPCRGGTALEVLEVQLPGKKAINAAAFWNGLRGQKLKKL 355
GO:0003824 "catalytic activity" evidence=IEA
GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS
GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS
TIGR_CMR|CHY_1483 CHY_1483 "methionyl-tRNA formyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0031 SO_0031 "methionyl-tRNA formyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1642 DET_1642 "methionyl-tRNA formyltransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1997 CBU_1997 "methionyl-tRNA formyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4004 BA_4004 "methionyl-tRNA formyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0130 GSU_0130 "methionyl-tRNA formyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P23882 fmt "10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVU4 fmt "Methionyl-tRNA formyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0045 VC_0045 "methionyl-tRNA formyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4XL81FMT_CALS82, ., 1, ., 2, ., 90.31720.80420.9774yesno
A8FD38FMT_BACP22, ., 1, ., 2, ., 90.33830.80950.9652yesno
B8G4D0FMT_CHLAD2, ., 1, ., 2, ., 90.32620.80420.9838yesno
A5V070FMT_ROSS12, ., 1, ., 2, ., 90.33940.80420.9353yesno
A3DCX5FMT_CLOTH2, ., 1, ., 2, ., 90.32520.80680.9807yesno
B9LFJ4FMT_CHLSY2, ., 1, ., 2, ., 90.32920.80420.9806yesno
B9DPM5FMT_STACT2, ., 1, ., 2, ., 90.33130.80150.9774yesno
C0QUK8FMT_PERMH2, ., 1, ., 2, ., 90.36280.80420.9774yesno
A7Z4J3FMT_BACA22, ., 1, ., 2, ., 90.31800.81210.9684yesno
A9WAR0FMT_CHLAA2, ., 1, ., 2, ., 90.32920.80420.9806yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.20.766
4th Layer2.1.2.90.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00002342
methionyl-trna formyltransferase (EC-2.1.2.9) (356 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.X.2264.1
hypothetical protein (594 aa)
     •• 0.977
SHMT6
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
     •• 0.933
SHMT1
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
     •• 0.933
SHMT8
serine hydroxymethyltransferase 8 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (530 aa)
     •• 0.932
SHMT3
precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa)
     •• 0.930
SHMT2
precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa)
     •• 0.930
SHMT7
precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa)
     •• 0.930
gw1.88.24.1
methionyl-tRNA synthetase (EC-6.1.1.10) (801 aa)
     •• 0.924
estExt_fgenesh4_pg.C_LG_I2429
methionyl-tRNA synthetase (EC-6.1.1.10) (805 aa)
     •• 0.922
SHMT5
serine hydroxymethyltransferase 5 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (552 aa)
     •• 0.921

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
PLN02285334 PLN02285, PLN02285, methionyl-tRNA formyltransfera 0.0
PRK00005309 PRK00005, fmt, methionyl-tRNA formyltransferase; R 3e-94
COG0223307 COG0223, Fmt, Methionyl-tRNA formyltransferase [Tr 4e-87
cd08646204 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA f 6e-84
TIGR00460313 TIGR00460, fmt, methionyl-tRNA formyltransferase 2e-63
pfam00551181 pfam00551, Formyl_trans_N, Formyl transferase 7e-34
PRK08125 660 PRK08125, PRK08125, bifunctional UDP-glucuronic ac 3e-33
cd08644203 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formylt 5e-33
cd08369173 cd08369, FMT_core, Formyltransferase, catalytic co 6e-31
PRK06988312 PRK06988, PRK06988, putative formyltransferase; Pr 1e-22
pfam02911100 pfam02911, Formyl_trans_C, Formyl transferase, C-t 8e-21
cd08645183 cd08645, FMT_core_GART, Phosphoribosylglycinamide 1e-19
COG0299200 COG0299, PurN, Folate-dependent phosphoribosylglyc 1e-18
cd0870487 cd08704, Met_tRNA_FMT_C, C-terminal domain of Form 6e-17
PRK05647200 PRK05647, purN, phosphoribosylglycinamide formyltr 8e-17
TIGR00639190 TIGR00639, PurN, phosphoribosylglycinamide formylt 1e-16
cd08653152 cd08653, FMT_core_like_3, Formyl transferase catal 1e-16
cd08651180 cd08651, FMT_core_like_4, Formyl transferase catal 4e-15
cd08823177 cd08823, FMT_core_like_5, Formyl transferase catal 7e-12
TIGR00655280 TIGR00655, PurU, formyltetrahydrofolate deformylas 2e-11
cd08648196 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formylte 3e-10
COG0788287 COG0788, PurU, Formyltetrahydrofolate hydrolase [N 1e-08
cd08822192 cd08822, FMT_core_like_2, Formyl transferase catal 1e-08
PLN02828268 PLN02828, PLN02828, formyltetrahydrofolate deformy 4e-08
cd08647203 cd08647, FMT_core_FDH_N, 10-formyltetrahydrofolate 2e-07
PRK13010289 PRK13010, purU, formyltetrahydrofolate deformylase 8e-07
cd08820173 cd08820, FMT_core_like_6, Formyl transferase catal 1e-06
PLN02331207 PLN02331, PLN02331, phosphoribosylglycinamide form 3e-06
PRK13011286 PRK13011, PRK13011, formyltetrahydrofolate deformy 7e-06
cd08649166 cd08649, FMT_core_NRPS_like, N-terminal formyl tra 1e-05
PRK06027286 PRK06027, purU, formyltetrahydrofolate deformylase 7e-05
PRK07579245 PRK07579, PRK07579, hypothetical protein; Provisio 0.001
>gnl|CDD|215159 PLN02285, PLN02285, methionyl-tRNA formyltransferase Back     alignment and domain information 
 Score =  571 bits (1474), Expect = 0.0
 Identities = 247/331 (74%), Positives = 282/331 (85%), Gaps = 2/331 (0%)

Query: 47  SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQY 106
            RKK LVFLG+P+V+  VLDAL +AS +PDS FEVAA+VTQPP+RR RGRK++PSPVAQ 
Sbjct: 4   GRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQL 63

Query: 107 ALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHP 166
           ALDRGFP DLIFTPE+AGE+ FLS LR LQP+LCITAAYGNILP KFL+IP +GTVNIHP
Sbjct: 64  ALDRGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHP 123

Query: 167 SLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLL 226
           SLLPLYRGAAPVQRALQ G  ETGVS+AFTVRALDAGPVIA+E++EVD+ IKAPELL LL
Sbjct: 124 SLLPLYRGAAPVQRALQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPELLPLL 183

Query: 227 FSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRA 286
           F  G++LL+RELPS+LDGSA+ KA PQDDSKAT APKI+ EESWLSFDEEA VLHNKVRA
Sbjct: 184 FELGTKLLLRELPSVLDGSAKDKATPQDDSKATHAPKISPEESWLSFDEEARVLHNKVRA 243

Query: 287 FAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCP--NIQTNEVDGITFKKDALVVPCGE 344
           FAGWPGTRAK  +VDD +G++ ++ELKIITTRVC     QT   D +TFKKD+L+VPCG 
Sbjct: 244 FAGWPGTRAKFQLVDDGDGEREVLELKIITTRVCEAGGEQTGSADAVTFKKDSLLVPCGG 303

Query: 345 CTALEVLEVQLPGKKAVSAAAFWNGLRGQKL 375
            T LEVLEVQ PGKK + A  FWNGLRGQ L
Sbjct: 304 GTWLEVLEVQPPGKKVMKAKDFWNGLRGQTL 334

Length = 334
>gnl|CDD|234567 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|223301 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|187715 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA formyltransferase, N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|232983 TIGR00460, fmt, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase Back     alignment and domain information
>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>gnl|CDD|187713 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formyltransferase domain Back     alignment and domain information
>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain Back     alignment and domain information
>gnl|CDD|235902 PRK06988, PRK06988, putative formyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|217282 pfam02911, Formyl_trans_C, Formyl transferase, C-terminal domain Back     alignment and domain information
>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART) Back     alignment and domain information
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|187732 cd08704, Met_tRNA_FMT_C, C-terminal domain of Formyltransferase and other enzymes Back     alignment and domain information
>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>gnl|CDD|187721 cd08653, FMT_core_like_3, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187720 cd08651, FMT_core_like_4, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187725 cd08823, FMT_core_like_5, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase Back     alignment and domain information
>gnl|CDD|187717 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|187724 cd08822, FMT_core_like_2, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase Back     alignment and domain information
>gnl|CDD|187716 cd08647, FMT_core_FDH_N, 10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|187722 cd08820, FMT_core_like_6, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>gnl|CDD|237266 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|187718 cd08649, FMT_core_NRPS_like, N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin Back     alignment and domain information
>gnl|CDD|235676 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|236058 PRK07579, PRK07579, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
COG0223307 Fmt Methionyl-tRNA formyltransferase [Translation, 100.0
PLN02285334 methionyl-tRNA formyltransferase 100.0
TIGR00460313 fmt methionyl-tRNA formyltransferase. The top-scor 100.0
PRK00005309 fmt methionyl-tRNA formyltransferase; Reviewed 100.0
PRK06988312 putative formyltransferase; Provisional 100.0
PRK08125 660 bifunctional UDP-glucuronic acid decarboxylase/UDP 100.0
PRK07579245 hypothetical protein; Provisional 100.0
PLN02828268 formyltetrahydrofolate deformylase 100.0
KOG3082338 consensus Methionyl-tRNA formyltransferase [Transl 100.0
TIGR00655280 PurU formyltetrahydrofolate deformylase. This mode 100.0
PRK06027286 purU formyltetrahydrofolate deformylase; Reviewed 100.0
PRK13011286 formyltetrahydrofolate deformylase; Reviewed 100.0
PRK13010289 purU formyltetrahydrofolate deformylase; Reviewed 100.0
TIGR00639190 PurN phosphoribosylglycinamide formyltransferase, 100.0
PRK05647200 purN phosphoribosylglycinamide formyltransferase; 100.0
PLN02331207 phosphoribosylglycinamide formyltransferase 100.0
PF00551181 Formyl_trans_N: Formyl transferase; InterPro: IPR0 100.0
COG0299200 PurN Folate-dependent phosphoribosylglycinamide fo 100.0
KOG2452 881 consensus Formyltetrahydrofolate dehydrogenase [Nu 100.0
KOG3076206 consensus 5'-phosphoribosylglycinamide formyltrans 100.0
COG0788287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 99.97
PF02911100 Formyl_trans_C: Formyl transferase, C-terminal dom 99.89
PF01408120 GFO_IDH_MocA: Oxidoreductase family, NAD-binding R 95.57
PRK08300302 acetaldehyde dehydrogenase; Validated 91.87
TIGR01761343 thiaz-red thiazolinyl imide reductase. This reduct 91.72
TIGR01921324 DAP-DH diaminopimelate dehydrogenase. This model r 91.2
TIGR03215285 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati 90.06
KOG2741351 consensus Dimeric dihydrodiol dehydrogenase [Carbo 87.81
PF0380796 F420_oxidored: NADP oxidoreductase coenzyme F420-d 86.9
PF00185158 OTCace: Aspartate/ornithine carbamoyltransferase, 85.45
TIGR01861513 ANFD nitrogenase iron-iron protein, alpha chain. T 85.42
COG0673342 MviM Predicted dehydrogenases and related proteins 84.63
PLN02342348 ornithine carbamoyltransferase 83.48
PLN02696454 1-deoxy-D-xylulose-5-phosphate reductoisomerase 81.6
COG0569225 TrkA K+ transport systems, NAD-binding component [ 81.54
CHL00073457 chlN photochlorophyllide reductase subunit N 80.87
cd01965428 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_l 80.78
PF00289110 CPSase_L_chain: Carbamoyl-phosphate synthase L cha 80.4
PRK13304265 L-aspartate dehydrogenase; Reviewed 80.38
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 80.22
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=8.8e-81  Score=596.58  Aligned_cols=302  Identities=42%  Similarity=0.722  Sum_probs=289.6

Q ss_pred             CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078           49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF  128 (378)
Q Consensus        49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~  128 (378)
                      +|||+||||++||.++|++|+++      +|+|++|||+||++.|||+++.++||++.|.++|||   |++|++++++++
T Consensus         1 ~mkivF~GTp~fa~~~L~~L~~~------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ip---v~qP~~l~~~e~   71 (307)
T COG0223           1 MMRIVFFGTPEFAVPSLEALIEA------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIP---VFQPEKLNDPEF   71 (307)
T ss_pred             CcEEEEEcCchhhHHHHHHHHhC------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCc---eeccccCCcHHH
Confidence            58999999999999999999985      599999999999999999999999999999999999   999999999999


Q ss_pred             HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEE
Q 048078          129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAR  208 (378)
Q Consensus       129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q  208 (378)
                      .+.+++++||++|+++|++|||+++|+.+++||||+||||||+|||++||||||+|||++||+|+|+|++++|+|||++|
T Consensus        72 ~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPIq~aI~~Gd~~TGvTim~M~~~lDaG~Il~q  151 (307)
T COG0223          72 LEELAALDPDLIVVVAYGQILPKEILDLPPYGCINLHPSLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDAGDILAQ  151 (307)
T ss_pred             HHHHhccCCCEEEEEehhhhCCHHHHhcCcCCeEEecCccCccccCccHHHHHHHcCCcccceEEEEccccCCCcceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchhHHHHHHHHhcCC
Q 048078          209 EKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFA  288 (378)
Q Consensus       209 ~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~  288 (378)
                      +.++|.++||..+|++|+++.++++|.++|..+.+|++  ...||+++++||++|++++|++|||+++|.+|+|+|||++
T Consensus       152 ~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~g~~--~~~~Q~e~~~tya~ki~ked~~Idw~~~a~~i~n~IRa~~  229 (307)
T COG0223         152 REVPIEPDDTAGSLHDKLAELGAELLLETLPQLEAGTL--TPIPQDEEEATYAPKITKEDGRIDWSKPAAQILNKIRAFN  229 (307)
T ss_pred             EEeccCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCcccCccccCCCHHHcccCCccCHHHHHHHHhccC
Confidence            99999999999999999999999999999999999986  7899999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeeeecCCCCcceeEEEEEEeeecCCCCCCCCcEE-EEeCCeEEEEeCCCCeEEEEEEecCCCCccCHHHHH
Q 048078          289 GWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGI-TFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFW  367 (378)
Q Consensus       289 p~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~~~~~~pG~i-~~~~~~l~V~c~dg~~l~I~~lq~~gkk~~~a~~f~  367 (378)
                      ||||||+.+.      |+    +++|++++..+......||+| ..++++++|+|++| .|+|.++|++|||.|++.+|+
T Consensus       230 P~Pga~~~~~------~~----~iki~~a~~~~~~~~~~pG~i~~~~~~~l~Va~~~g-~l~l~~lQ~~gkk~~~~~~~l  298 (307)
T COG0223         230 PWPGAWTELG------GK----RIKIWEARVLEGASNGKPGEILAADKKGLLVACGDG-ALRLTELQPAGKKAMSAADFL  298 (307)
T ss_pred             CCCceEEEEC------Ce----EEEEEEEEEccccccCCCcceEEecCCcEEEEeCCc-eEEEEeeccCCCCCCCHHHHh
Confidence            9999999986      54    899999998876433789999 66778999999999 699999999999999999999


Q ss_pred             cccCC
Q 048078          368 NGLRG  372 (378)
Q Consensus       368 ~g~~~  372 (378)
                      ||.+.
T Consensus       299 ~g~~~  303 (307)
T COG0223         299 NGRRL  303 (307)
T ss_pred             ccccc
Confidence            99873

>PLN02285 methionyl-tRNA formyltransferase Back     alignment and domain information
>TIGR00460 fmt methionyl-tRNA formyltransferase Back     alignment and domain information
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>PRK06988 putative formyltransferase; Provisional Back     alignment and domain information
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>PRK07579 hypothetical protein; Provisional Back     alignment and domain information
>PLN02828 formyltetrahydrofolate deformylase Back     alignment and domain information
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>PLN02331 phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group Back     alignment and domain information
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2 Back     alignment and domain information
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot Back     alignment and domain information
>PRK08300 acetaldehyde dehydrogenase; Validated Back     alignment and domain information
>TIGR01761 thiaz-red thiazolinyl imide reductase Back     alignment and domain information
>TIGR01921 DAP-DH diaminopimelate dehydrogenase Back     alignment and domain information
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) Back     alignment and domain information
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain Back     alignment and domain information
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 Back     alignment and domain information
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain Back     alignment and domain information
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] Back     alignment and domain information
>PLN02342 ornithine carbamoyltransferase Back     alignment and domain information
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase Back     alignment and domain information
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>CHL00073 chlN photochlorophyllide reductase subunit N Back     alignment and domain information
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like Back     alignment and domain information
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PRK13304 L-aspartate dehydrogenase; Reviewed Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
4iqf_A317 Crystal Structure Of Methyionyl-trna Formyltransfer 1e-34
3tqq_A314 Structure Of The Methionyl-Trna Formyltransferase ( 1e-32
1fmt_A314 Methionyl-Trnafmet Formyltransferase From Escherich 7e-32
3q0i_A318 Methionyl-Trna Formyltransferase From Vibrio Choler 1e-31
3r8x_A318 Crystal Structure Of Methionyl-Trna Formyltransfera 6e-29
1z7e_A 660 Crystal Structure Of Full Length Arna Length = 660 8e-25
2bln_A305 N-Terminal Formyltransferase Domain Of Arna In Comp 1e-24
1yrw_A302 Crystal Structure Of E.Coli Arna Transformylase Dom 1e-24
1s3i_A310 Crystal Structure Of The N Terminal Hydrolase Domai 6e-12
4ds3_A209 Crystal Structure Of Phosphoribosylglycinamide Form 9e-12
2bw0_A329 Crystal Structure Of The Hydrolase Domain Of Human 3e-11
3p9x_A211 Crystal Structure Of Phosphoribosylglycinamide Form 3e-10
3tqr_A215 Structure Of The Phosphoribosylglycinamide Formyltr 5e-10
2gar_A212 A Ph-dependent Stablization Of An Active Site Loop 8e-10
3kcq_A215 Crystal Structure Of Phosphoribosylglycinamide Form 2e-09
1grc_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 3e-09
1cdd_A212 Structures Of Apo And Complexed Escherichia Coli Gl 3e-09
1c3e_A209 New Insights Into Inhibitor Design From The Crystal 4e-09
2ywr_A216 Crystal Structure Of Gar Transformylase From Aquife 1e-08
3n0v_A286 Crystal Structure Of A Formyltetrahydrofolate Defor 2e-08
3av3_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 5e-08
3nrb_A287 Crystal Structure Of A Formyltetrahydrofolate Defor 1e-07
3o1l_A302 Crystal Structure Of A Formyltetrahydrofolate Defor 1e-07
3da8_A215 Crystal Structure Of Purn From Mycobacterium Tuberc 4e-07
3auf_A229 Crystal Structure Of Glycinamide Ribonucleotide Tra 1e-06
1zlx_A203 The Apo Structure Of Human Glycinamide Ribonucleoti 2e-06
3lou_A292 Crystal Structure Of Formyltetrahydrofolate Deformy 2e-06
1zly_A203 The Structure Of Human Glycinamide Ribonucleotide T 3e-06
1meo_A209 Human Glycinamide Ribonucleotide Transformylase At 3e-06
3obi_A288 Crystal Structure Of A Formyltetrahydrofolate Defor 3e-06
1mej_B223 Human Glycinamide Ribonucleotide Transformylase Dom 4e-06
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase From Bacillus Anthracis Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 162/324 (50%), Gaps = 25/324 (7%)
Query: 52  LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG 111
           +VF G+P  SV VL  L          ++V  +VTQP     R + + P+PV   A   G
Sbjct: 7   VVFXGTPDFSVPVLRRLIEDG------YDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHG 60
Query: 112 FPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPL 171
            P   +  P R  E      + AL+P+L +TAA+G I+P++ L  P  G +N+H SLLP 
Sbjct: 61  IP---VLQPLRIREKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCINVHASLLPE 117
Query: 172 YRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGS 231
            RG AP+  A+  G ++TG+++ + V  LDAG ++ + ++E++++     L   L   G+
Sbjct: 118 LRGGAPIHYAIXEGKEKTGITIXYXVEKLDAGDILTQVEVEIEERETTGSLFDKLSEAGA 177
Query: 232 ELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWP 291
            LL + +P ++ G  +++   Q++ + T A  I  E+  + + +    ++N +R    WP
Sbjct: 178 HLLSKTVPLLIQG--KLEPIKQNEEEVTFAYNIKREQEKIDWTKTGEEVYNHIRGLNPWP 235
Query: 292 GTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGIT-FKKDALVVPCGECTALEV 350
                +A      GQ     +K+      P  ++ E   I   ++D  VV  G  T +++
Sbjct: 236 VAYTTLA------GQV----VKVWWGEKVPVTKSAEAGTIVAIEEDGFVVATGNETGVKI 285
Query: 351 LEVQLPGKKAVSAAAFWNGLRGQK 374
            E+Q  GKK  S + F   LRG K
Sbjct: 286 TELQPSGKKRXSCSQF---LRGTK 306
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt) From Coxiella Burnetii Length = 314 Back     alignment and structure
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli Length = 314 Back     alignment and structure
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae Length = 318 Back     alignment and structure
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From Yersinia Pestis Complexed With L-Methionine Length = 318 Back     alignment and structure
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 Back     alignment and structure
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex With N-5-Formyltetrahydrofolate And Ump Length = 305 Back     alignment and structure
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain Length = 302 Back     alignment and structure
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of 10- Formyltetrahydrofolate Dehydrogenase Length = 310 Back     alignment and structure
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Brucella Melitensis Length = 209 Back     alignment and structure
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10- Formyltetrahydrofolate 2 Dehydrogenase Length = 329 Back     alignment and structure
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Bacillus Halodurans Length = 211 Back     alignment and structure
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide Formyltransferase (Purn) In Complex With Ches From Coxiella Burnetii Length = 215 Back     alignment and structure
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop Observed From Low And High Ph Crystal Structures Of Mutant Monomeric Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Anaplasma Phagocytophilum Length = 215 Back     alignment and structure
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase From Escherichia Coli At 3.0 Angstroms Resolution: A Target Enzyme For Chemotherapy Length = 212 Back     alignment and structure
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal Structure And Nmr Studies Of E. Coli Gar Transformylate In Complex With Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid. Length = 209 Back     alignment and structure
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex Aeolicus Length = 216 Back     alignment and structure
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286 Back     alignment and structure
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Geobacillus Kaustophilus Length = 212 Back     alignment and structure
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287 Back     alignment and structure
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302 Back     alignment and structure
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Symbiobacterium Toebii Length = 229 Back     alignment and structure
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide Transformylase Length = 203 Back     alignment and structure
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292 Back     alignment and structure
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide Transformylase In Complex With Alpha,beta-n- (hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8, Dideazafolate Length = 203 Back     alignment and structure
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2 Length = 209 Back     alignment and structure
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288 Back     alignment and structure
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At Ph 8.5 Length = 223 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
1fmt_A314 Methionyl-tRNA FMet formyltransferase; initiator t 8e-96
3rfo_A317 Methionyl-tRNA formyltransferase; structural genom 1e-95
3tqq_A314 Methionyl-tRNA formyltransferase; protein synthesi 2e-95
3q0i_A318 Methionyl-tRNA formyltransferase; structural genom 2e-93
2bln_A305 Protein YFBG; transferase, formyltransferase, L-AR 3e-93
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 6e-90
2bw0_A329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 9e-84
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 2e-53
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 2e-19
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 2e-19
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 2e-19
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 3e-19
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 3e-19
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 3e-19
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 9e-19
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 2e-18
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 6e-18
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 1e-17
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 1e-11
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 2e-11
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 2e-11
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 2e-11
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Length = 314 Back     alignment and structure
 Score =  287 bits (737), Expect = 8e-96
 Identities = 103/331 (31%), Positives = 159/331 (48%), Gaps = 30/331 (9%)

Query: 52  LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG 111
           ++F G+P  +   LDAL ++         V  + TQP     RG+K++PSPV   A ++G
Sbjct: 6   IIFAGTPDFAARHLDALLSSG------HNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG 59

Query: 112 FPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPL 171
            P   +F P           +  LQ ++ +  AYG ILP   L +P +G +N+H SLLP 
Sbjct: 60  LP---VFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPR 116

Query: 172 YRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGS 231
           +RGAAP+QR+L  G  ETGV++      LD G ++ +    +  +  +  L   L   G 
Sbjct: 117 WRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGP 176

Query: 232 ELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWP 291
           + LI  L  + DG+A  K + QD++  T A K++ EE+ + +   A  L   +RAF  WP
Sbjct: 177 QGLITTLKQLADGTA--KPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWP 234

Query: 292 GTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDG--ITFKKDALVVPCGECTALE 349
            +  ++       GQ     +K+    V     TN   G  +   K  + V  G+   L 
Sbjct: 235 MSWLEI------EGQP----VKVWKASVIDT-ATNAAPGTILEANKQGIQVATGD-GILN 282

Query: 350 VLEVQLPGKKAVSAAAFWNGLR-----GQKL 375
           +L +Q  GKKA+SA    N  R     G +L
Sbjct: 283 LLSLQPAGKKAMSAQDLLNSRREWFVPGNRL 313
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Length = 314 Back     alignment and structure
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Length = 318 Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Length = 305 Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Length = 329 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Length = 260 Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229 Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209 Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212 Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215 Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215 Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287 Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302 Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288 Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Length = 292 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
3tqq_A314 Methionyl-tRNA formyltransferase; protein synthesi 100.0
3rfo_A317 Methionyl-tRNA formyltransferase; structural genom 100.0
3q0i_A318 Methionyl-tRNA formyltransferase; structural genom 100.0
1fmt_A314 Methionyl-tRNA FMet formyltransferase; initiator t 100.0
2bln_A305 Protein YFBG; transferase, formyltransferase, L-AR 100.0
2bw0_A329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 100.0
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 100.0
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 100.0
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 100.0
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 100.0
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 100.0
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 100.0
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 100.0
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 100.0
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 100.0
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 100.0
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 100.0
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 100.0
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 100.0
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 100.0
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 100.0
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 100.0
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 100.0
3rc1_A350 Sugar 3-ketoreductase; sugar biosynthesis, TDP bin 95.51
3ec7_A357 Putative dehydrogenase; alpha-beta, structural gen 95.34
4had_A350 Probable oxidoreductase protein; structural genomi 93.44
3db2_A354 Putative NADPH-dependent oxidoreductase; two domai 93.14
3q2i_A354 Dehydrogenase; rossmann fold, UDP-sugar binding, N 93.14
1h6d_A433 Precursor form of glucose-fructose oxidoreductase; 93.05
3e9m_A330 Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, 93.0
4gmf_A372 Yersiniabactin biosynthetic protein YBTU; rossmann 92.97
4fb5_A393 Probable oxidoreductase protein; PSI-biology, nysg 92.86
3moi_A387 Probable dehydrogenase; structural genomics, PSI2, 92.72
3v5n_A417 Oxidoreductase; structural genomics, PSI-biology, 92.64
3dty_A398 Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram 92.53
3euw_A344 MYO-inositol dehydrogenase; protein structure init 92.47
3evn_A329 Oxidoreductase, GFO/IDH/MOCA family; structural ge 91.74
4hkt_A331 Inositol 2-dehydrogenase; structural genomics, nys 91.69
3mz0_A344 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; 91.51
3btv_A 438 Galactose/lactose metabolism regulatory protein GA 91.48
4gqa_A412 NAD binding oxidoreductase; structural genomics, P 91.46
3e18_A359 Oxidoreductase; dehydrogenase, NAD-binding, struct 91.38
1ydw_A362 AX110P-like protein; structural genomics, protein 91.37
3u3x_A361 Oxidoreductase; structural genomics, PSI-biology, 91.3
3a06_A376 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M 91.09
3cea_A346 MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore 90.98
3fwz_A140 Inner membrane protein YBAL; TRKA-N domain, E.coli 90.88
3ohs_X334 Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d 90.86
3ezy_A344 Dehydrogenase; structural genomics, unknown functi 90.71
2nvw_A 479 Galactose/lactose metabolism regulatory protein GA 90.67
3nkl_A141 UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo 90.6
3uuw_A308 Putative oxidoreductase with NAD(P)-binding rossm 90.4
1zh8_A340 Oxidoreductase; TM0312, structural genomics, JO ce 89.92
1tlt_A319 Putative oxidoreductase (virulence factor MVIM HO; 89.62
2p2s_A336 Putative oxidoreductase; YP_050235.1, structural g 89.22
4egs_A180 Ribose 5-phosphate isomerase RPIB; tyrosine phosph 88.88
3l4b_C218 TRKA K+ channel protien TM1088B; potassium channel 88.71
1lss_A140 TRK system potassium uptake protein TRKA homolog; 88.62
4h3v_A390 Oxidoreductase domain protein; structural genomics 88.53
3ip3_A337 Oxidoreductase, putative; structural genomics, PSI 88.11
1nvm_B312 Acetaldehyde dehydrogenase (acylating), 4-hydroxy- 87.36
2ixa_A 444 Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver 87.26
3m2t_A359 Probable dehydrogenase; PSI, SGXNY, structural gen 86.72
4ew6_A330 D-galactose-1-dehydrogenase protein; nysgrc, PSI-b 86.5
2ho3_A325 Oxidoreductase, GFO/IDH/MOCA family; streptococcus 86.46
3ic5_A118 Putative saccharopine dehydrogenase; structural ge 85.0
3llv_A141 Exopolyphosphatase-related protein; NAD(P)-binding 84.41
3i6i_A346 Putative leucoanthocyanidin reductase 1; rossmann 83.35
2glx_A332 1,5-anhydro-D-fructose reductase; NADP(H) dependen 83.24
3i23_A349 Oxidoreductase, GFO/IDH/MOCA family; structural ge 83.12
3l9w_A 413 Glutathione-regulated potassium-efflux system Pro 82.83
1xea_A323 Oxidoreductase, GFO/IDH/MOCA family; structural ge 81.87
4g65_A 461 TRK system potassium uptake protein TRKA; structur 81.65
3c1a_A315 Putative oxidoreductase; ZP_00056571.1, oxidoreduc 81.18
3pdi_A483 Nitrogenase MOFE cofactor biosynthesis protein NI; 81.02
1r0k_A388 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N 80.42
3bio_A304 Oxidoreductase, GFO/IDH/MOCA family; structural ge 80.2
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Back     alignment and structure
Probab=100.00  E-value=7.6e-78  Score=584.71  Aligned_cols=302  Identities=34%  Similarity=0.512  Sum_probs=278.4

Q ss_pred             CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078           48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA  127 (378)
Q Consensus        48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~  127 (378)
                      ++|||+||||++|++++|++|+++      +++|++|||+||++.|||+++.+++|+++|+++|||   ++++.+.++++
T Consensus         1 ~~mrivf~Gtp~fa~~~L~~L~~~------~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIp---v~~~~~~~~~~   71 (314)
T 3tqq_A            1 MSLKIVFAGTPQFAVPTLRALIDS------SHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIP---IIQPFSLRDEV   71 (314)
T ss_dssp             CCCEEEEEECSGGGHHHHHHHHHS------SSEEEEEECCCC----------CCHHHHHHHHTTCC---EECCSCSSSHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCC---EECcccCCCHH
Confidence            479999999999999999999985      589999999999999999999999999999999999   88899998899


Q ss_pred             HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeE
Q 048078          128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIA  207 (378)
Q Consensus       128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~  207 (378)
                      +++.|+++++|++|+++|++|||+++|+.+++|+||+||||||+|||++|++|||++|+++||||+|+|++++|+||||+
T Consensus        72 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~~D~G~Ii~  151 (314)
T 3tqq_A           72 EQEKLIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNEGLDTGDVLA  151 (314)
T ss_dssp             HHHHHHTTCCSEEEEESCCSCCCHHHHTSSTTCEEEEESSCTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEEE
T ss_pred             HHHHHHhcCCCEEEEcCcccccCHHHHhhCcCCEEEecCccccCCCCccHHHHHHHcCCCeeEEEEEeeecCCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchhHHHHHHHHhcC
Q 048078          208 REKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAF  287 (378)
Q Consensus       208 Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~  287 (378)
                      |+.++|.++||..+|++|+.+++++++.++|+.+.+|..  .+.||+++.+||+||++++|++|||+++|++|+|+|||+
T Consensus       152 q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~--~~~~Q~~~~~tya~ki~~~d~~Idw~~~a~~I~~~iRa~  229 (314)
T 3tqq_A          152 KSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDI--KLEKQDEASATYASKIQKQEALIDWRKSAVEIARQVRAF  229 (314)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCBCCCGGGCCBCCCCCGGGGBCCTTSBHHHHHHHHHHT
T ss_pred             EEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CcCcCCCccccCCCCCCHHHheecccCCHHHHHHHHhcc
Confidence            999999999999999999999999999999999999986  789999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeeeecCCCCcceeEEEEEEeeecCCCCCCCCcEE-EEeCCeEEEEeCCCCeEEEEEEecCCCCccCHHHH
Q 048078          288 AGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGI-TFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAF  366 (378)
Q Consensus       288 ~p~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~~~~~~pG~i-~~~~~~l~V~c~dg~~l~I~~lq~~gkk~~~a~~f  366 (378)
                      +||||||++++      |+    ++++++++..+......||+| ..++++++|+|+|| +|+|.++|++|||.|+|++|
T Consensus       230 ~P~Pga~~~~~------g~----~~ki~~a~~~~~~~~~~pG~v~~~~~~~l~V~~~dg-~l~i~~lq~~gkk~m~~~~f  298 (314)
T 3tqq_A          230 NPTPIAFTYFE------GQ----PMRIWRATVVDEKTDFEPGVLVDADKKGISIAAGSG-ILRLHQLQLPGKRVCSAGDF  298 (314)
T ss_dssp             TTTTCCEEEET------TE----EEEEEEEEEECCCCSSCTTCEEEEETTEEEEECSBS-EEEEEEEECTTSCCEEHHHH
T ss_pred             CCCCceEEEEC------CE----EEEEEEEEEecCCCCCCCcEEEEecCCEEEEEECCC-EEEEeEEEcCCCCccCHHHH
Confidence            99999999985      54    899999987765445689999 56788999999999 79999999999999999999


Q ss_pred             HcccC
Q 048078          367 WNGLR  371 (378)
Q Consensus       367 ~~g~~  371 (378)
                      +||++
T Consensus       299 ~~g~~  303 (314)
T 3tqq_A          299 INAHG  303 (314)
T ss_dssp             HHHHG
T ss_pred             hccCc
Confidence            99987
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0 Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* Back     alignment and structure
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Back     alignment and structure
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} Back     alignment and structure
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Back     alignment and structure
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Back     alignment and structure
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Back     alignment and structure
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Back     alignment and structure
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* Back     alignment and structure
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} Back     alignment and structure
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Back     alignment and structure
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Back     alignment and structure
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Back     alignment and structure
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A Back     alignment and structure
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} Back     alignment and structure
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} Back     alignment and structure
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Back     alignment and structure
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} Back     alignment and structure
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* Back     alignment and structure
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} Back     alignment and structure
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X Back     alignment and structure
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Back     alignment and structure
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Back     alignment and structure
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} Back     alignment and structure
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Back     alignment and structure
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Back     alignment and structure
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} Back     alignment and structure
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Back     alignment and structure
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} Back     alignment and structure
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Back     alignment and structure
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Back     alignment and structure
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Back     alignment and structure
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} Back     alignment and structure
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Back     alignment and structure
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Back     alignment and structure
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Back     alignment and structure
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Back     alignment and structure
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Back     alignment and structure
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Back     alignment and structure
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} Back     alignment and structure
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Back     alignment and structure
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii} Back     alignment and structure
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* Back     alignment and structure
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 378
d1fmta2206 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransf 7e-34
d2blna2203 c.65.1.1 (A:1-203) Polymyxin resistance protein Ar 6e-25
d2bw0a2203 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehyd 6e-22
d1zgha2164 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransf 1e-16
d1fmta1108 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltran 1e-14
d2bw0a1104 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate deh 3e-14
d1meoa_205 c.65.1.1 (A:) Glycinamide ribonucleotide transform 7e-14
d2blna1101 b.46.1.1 (A:204-304) Polymyxin resistance protein 1e-12
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (307), Expect = 7e-34
 Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 11/212 (5%)

Query: 52  LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG 111
           ++F G+P  +   LDAL ++         V  + TQP     RG+K++PSPV   A ++G
Sbjct: 6   IIFAGTPDFAARHLDALLSSG------HNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG 59

Query: 112 FPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPL 171
            P     +         ++ L   Q ++ +  AYG ILP   L +P +G +N+H SLLP 
Sbjct: 60  LPVFQPVSLRPQENQQLVAEL---QADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPR 116

Query: 172 YRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGS 231
           +RGAAP+QR+L  G  ETGV++      LD G ++ +    +  +  +  L   L   G 
Sbjct: 117 WRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGP 176

Query: 232 ELLIRELPSILDGSARVKAQPQDDSKATLAPK 263
           + LI  L  + DG    K + QD++  T A K
Sbjct: 177 QGLITTLKQLADG--TAKPEVQDETLVTYAEK 206
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 203 Back     information, alignment and structure
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Length = 164 Back     information, alignment and structure
>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 108 Back     information, alignment and structure
>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate dehydrogenase domain 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205 Back     information, alignment and structure
>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA, domain 2 {Escherichia coli [TaxId: 562]} Length = 101 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d1fmta2206 Methionyl-tRNAfmet formyltransferase {Escherichia 100.0
d2blna2203 Polymyxin resistance protein ArnA, N-terminal doma 100.0
d2bw0a2203 10-formyltetrahydrofolate dehydrogenase domain 1 { 100.0
d1jkxa_209 Glycinamide ribonucleotide transformylase, GART {E 100.0
d1meoa_205 Glycinamide ribonucleotide transformylase, GART {H 100.0
d1zgha2164 Methionyl-tRNAfmet formyltransferase {Clostridium 99.96
d1fmta1108 Methionyl-tRNAfmet formyltransferase, C-terminal d 99.9
d2blna1101 Polymyxin resistance protein ArnA, domain 2 {Esche 99.86
d2bw0a1104 10-formyltetrahydrofolate dehydrogenase domain 2 { 99.84
d1nvmb1157 Acetaldehyde dehydrogenase (acylating) {Pseudomona 95.89
d1ydwa1184 Probable oxidoreductase At4g09670 {Thale cress (Ar 95.82
d1zgha162 Methionyl-tRNAfmet formyltransferase, C-terminal d 95.79
d1h6da1221 Glucose-fructose oxidoreductase, N-terminal domain 95.59
d2nvwa1237 Galactose/lactose metabolism regulatory protein GA 95.41
d1lssa_132 Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax 94.49
d1tlta1164 Virulence factor MviM {Escherichia coli [TaxId: 56 94.28
d1zh8a1181 Hypothetical protein TM0312 {Thermotoga maritima [ 93.89
d2ahra2152 Pyrroline-5-carboxylate reductase ProC {Streptococ 91.66
d1r0ka2150 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z 89.29
d1f06a1170 Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb 88.4
d1yqga2152 Pyrroline-5-carboxylate reductase ProC {Neisseria 87.65
d1kjqa2111 Glycinamide ribonucleotide transformylase PurT, N- 87.46
d1udca_338 Uridine diphosphogalactose-4-epimerase (UDP-galact 85.8
d1xeaa1167 Putative oxidoreductase VCA1048 {Vibrio cholerae [ 82.75
d1hdoa_205 Biliverdin IX beta reductase {Human (Homo sapiens) 82.41
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 81.02
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 80.76
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-49  Score=359.19  Aligned_cols=206  Identities=35%  Similarity=0.571  Sum_probs=191.3

Q ss_pred             CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078           47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED  126 (378)
Q Consensus        47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~  126 (378)
                      +.+|||+|||++.|+..+|+.|++.      +++|++|||.+++..+++.......+..+|.++++|   +......+++
T Consensus         1 ~~~mKI~f~G~~~~~~~~L~~L~~~------~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~   71 (206)
T d1fmta2           1 SESLRIIFAGTPDFAARHLDALLSS------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLP---VFQPVSLRPQ   71 (206)
T ss_dssp             CCCCEEEEEECSHHHHHHHHHHHHT------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCC---EECCSCSCSH
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhC------CCCEEEEEeCCCcccccCccccccchhhhhhccCcc---ccccccccch
Confidence            4689999999999999999999985      689999999998888888777888999999999999   7777788888


Q ss_pred             HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCee
Q 048078          127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVI  206 (378)
Q Consensus       127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii  206 (378)
                      .+.+.++..++|++|+++|++|||+++|+.++.|+||+|||+||+|||++|++|||+||++++|+|+|+|++++|+|+||
T Consensus        72 ~~~~~~~~~~~d~~v~~~~~~ii~~~il~~~k~g~iN~Hps~LP~yRG~~pi~wai~nge~~~GvT~h~i~~~iD~G~Ii  151 (206)
T d1fmta2          72 ENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDML  151 (206)
T ss_dssp             HHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCEE
T ss_pred             hhHHHHhhhcceEEEeeccccccchhhHhcCCCCeeecCchhhHhhhhhhhhhhHHHcCCceeceeEEEeccccChHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCC
Q 048078          207 AREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPK  263 (378)
Q Consensus       207 ~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k  263 (378)
                      .|+.++|.++||+.+|++|+..++.+++.++|..+.+|+.  .+.+|++..+|||+|
T Consensus       152 ~q~~~~i~~~dt~~~l~~k~~~~~~~l~~~~i~~i~~~~~--~~~~Q~~~~atY~~K  206 (206)
T d1fmta2         152 YKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLADGTA--KPEVQDETLVTYAEK  206 (206)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCBCCCGGGCCBCCC
T ss_pred             hhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCC--ceecCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999986  789999999999987
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate dehydrogenase domain 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zgha1 b.46.1.1 (A:165-226) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Back     information, alignment and structure
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Back     information, alignment and structure
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure