Citrus Sinensis ID: 048098

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MAEKKKAPGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHEEEEEcccEEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEccccEEEEEccccEEEEEEccEEEEEEEccccEEEccEEEEEEEEEEEEEccccccccHHHHHHccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccEEcccccccccEEEEEEEEEEEEEcccccEEEEccccEEEEEEcccEEEEEEcccccccccccEEEEEEEEEEccHHcccccHHHHHHcccEEEEEEEEEcEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEcccEEcc
Coil and Loop (DISEMBL)
maekkkapgadhdrlssggddeniMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFrvknpkirlnnwTITKLElvngtipkpgvniSLIADmsvknpnvasfkygdtiitglyhrgdlvgeargppglVRAWRTLRMNLTVDLitdramsspnlsadiesgilvldsytrvggRANILNLFKRHVVVKFncssqlnttSLQIYQFNCKRKVQF
Flexible Loop (DISEMBL)
maekkkapgadhdrlssggddeniMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVfrvknpkirlnnWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYhrgdlvgeargPPGLVRAWRTLRMNLTVDLitdramsspnlsadiesGILVLDSYTRVGGRANILNLFKRHVVVKFNCssqlnttslqiyqfnckrkvqf
Low Complexity Region (SEG)
MAEKKKAPGADHDRLSSGGDDENIMaswaakarrrrsikiccciaallvilaiviliiliFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF
Disordered region (IsUnstruct)
*************************ASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCK*****
Disordered Region (DISOPRED)
**************************************KICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSS*NLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKR*VQF
Disordered Region (DISEMBL)
***************SSGGDDENIMASW********SIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF
Disordered Region (DISPRO)
*******************************ARRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEKKKAPGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
255541728	218	conserved hypothetical protein [Ricinus	0.936	0.954	0.541	4e-57
224064075	217	predicted protein [Populus trichocarpa]	0.959	0.981	0.548	9e-54
225454320	220	PREDICTED: uncharacterized protein LOC10	0.968	0.977	0.519	2e-53
350534998	226	plant cell wall protein SlTFR88 [Solanum	0.950	0.933	0.466	2e-47
356560687	219	PREDICTED: uncharacterized protein LOC10	0.909	0.922	0.5	2e-47
255639066	219	unknown [Glycine max]	0.923	0.936	0.5	2e-47
449495333	219	PREDICTED: uncharacterized protein LOC10	0.972	0.986	0.448	7e-41
297824675	221	hypothetical protein ARALYDRAFT_483760 [	0.846	0.850	0.476	2e-40
15225931	221	late embryogenesis abundant hydroxyproli	0.846	0.850	0.471	4e-40
224072044	219	predicted protein [Populus trichocarpa]	0.941	0.954	0.436	2e-35

>gi|255541728|ref|XP_002511928.1| conserved hypothetical protein [Ricinus communis] gi|223549108|gb|EEF50597.1| conserved hypothetical protein [Ricinus communis]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 117/216 (54%), Positives = 152/216 (70%), Gaps = 8/216 (3%)

Query: 7   APGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFRV 66
           AP AD  R SS  ++  I      K RRRR IK C CI A L++ AIVI +ILIFTVFRV
Sbjct: 11  APSAD--RTSSDDEEATI---HLKKTRRRRCIKCCGCITASLLVPAIVI-VILIFTVFRV 64

Query: 67  KNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGD 126
           K+P I+LNN  IT +EL+N TIPKPG NISL+AD+SVKNPN+ SFKY +T  + LY+ G 
Sbjct: 65  KDPTIKLNNVIITHMELINNTIPKPGTNISLVADLSVKNPNIVSFKYDNT-TSALYYHGV 123

Query: 127 LVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANI 186
           LVGEARGPPG  +A RT+R+N T+DL+ D+ +S+PNL+ D  +G+L +DSYT++ G+  I
Sbjct: 124 LVGEARGPPGHSKARRTMRLNATIDLVADKLISNPNLNTDAATGLLTVDSYTKLPGKVKI 183

Query: 187 LNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF 222
           L + K+HV +K NCS  +N +S  I    CK KV  
Sbjct: 184 L-IIKKHVTIKMNCSLTVNISSQAIQSQKCKNKVDL 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064075|ref|XP_002301379.1| predicted protein [Populus trichocarpa] gi|222843105|gb|EEE80652.1| predicted protein [Populus trichocarpa]

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 124/226 (54%), Positives = 158/226 (69%), Gaps = 13/226 (5%)

Query: 1   MAEKKK----APGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVIL 56
           MA++++    AP A+        D+E   AS   K R R+ +K C  + A+ VIL +  +
Sbjct: 1   MAKREQVRPLAPAAER----RCSDEEG--ASKHHKKRSRKCVKCCVFVTAIFVIL-VTAI 53

Query: 57  IILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDT 116
           I+L FTVFRVK+P I +N++TITKLEL NGT PKPGVNI+LIAD+SVKNPNVASFKY +T
Sbjct: 54  IVLRFTVFRVKDPVITMNSFTITKLELSNGTTPKPGVNITLIADVSVKNPNVASFKYSNT 113

Query: 117 IITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDS 176
             T LY+   +VGEAR  PG  RA RT+RMN+TVD+I DR MS+PNL+AD+ SGIL + +
Sbjct: 114 TTT-LYYDRQIVGEARNGPGHARARRTMRMNVTVDIIPDRIMSNPNLNADMSSGILSMTT 172

Query: 177 YTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF 222
           YTRV GR  I+ + KR++VVK  CS  LN TS QI    CKRKV F
Sbjct: 173 YTRVPGRMKIV-IVKRNIVVKMTCSITLNITSQQIQTQQCKRKVDF 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454320|ref|XP_002277286.1| PREDICTED: uncharacterized protein LOC100258567 [Vitis vinifera] gi|147832282|emb|CAN73280.1| hypothetical protein VITISV_040609 [Vitis vinifera] gi|297745338|emb|CBI40418.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/227 (51%), Positives = 160/227 (70%), Gaps = 12/227 (5%)

Query: 1   MAEKKK----APGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVIL 56
           M E+++    AP A H RLSS  D    + +  ++ RRRR IK   CIAA ++I A V+ 
Sbjct: 1   MVEREQVRPLAP-ASH-RLSSEDDK---VTNHLSRLRRRRCIKCWGCIAATILIQAAVV- 54

Query: 57  IILIFTVFRVKNPKIRLNNWTITKLELVNGTI-PKPGVNISLIADMSVKNPNVASFKYGD 115
           IIL+FTVFRVK+P I+LN +T+ KLEL+NGT  P PGVN+SL AD+SVKNPN ASF+Y +
Sbjct: 55  IILVFTVFRVKDPVIKLNGFTVDKLELINGTTTPGPGVNMSLTADVSVKNPNFASFRYKN 114

Query: 116 TIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLD 175
           T  T L++ G ++GEARGPPG  +A RT++MN+T+++I D  MS+P+L  DI SGIL ++
Sbjct: 115 TTTT-LFYSGTVIGEARGPPGQAKARRTMKMNVTIEIILDSLMSNPSLLTDISSGILPMN 173

Query: 176 SYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF 222
           +Y+RV GR  +L + K+HVVVK NCS  +N TS  I +  CKR V  
Sbjct: 174 TYSRVPGRVKMLKIIKKHVVVKMNCSVTVNITSRSIQEQKCKRDVNL 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534998|ref|NP_001233914.1| plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|94549041|gb|ABF39005.1| plant cell wall protein SlTFR88 [Solanum lycopersicum]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 151/221 (68%), Gaps = 10/221 (4%)

Query: 7   APGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFRV 66
           AP +D    S   DD++   +   +  +RR  K C C++  + ++AI+I+I++ FTVF++
Sbjct: 11  APASDRPHSS---DDDDTTLNIKKRFHQRRCFKYCACVSTFVFLVAIIIIILI-FTVFKI 66

Query: 67  KNPKIRLNNWTITKLELVN--GT---IPKPGVNISLIADMSVKNPNVASFKYGDTIITGL 121
           K+P I +N  TI KL+LVN  GT   IPKPG N+++ AD+SVKNPN +SFKY +T  T +
Sbjct: 67  KDPIITMNGVTIEKLDLVNTSGTLLPIPKPGSNMTIKADVSVKNPNYSSFKYSNTTTT-I 125

Query: 122 YHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVG 181
            +R  ++GEARGPPG  +A +T+RMN+T+D++TD+ MS P L  DI SG+L ++SYT VG
Sbjct: 126 SYRDAVIGEARGPPGKSKARKTMRMNVTIDIMTDKIMSHPGLQDDISSGLLTMNSYTSVG 185

Query: 182 GRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF 222
           GR  +LN+ K++VVVK NCS  +N TS  I    C +KV+ 
Sbjct: 186 GRVKLLNMIKKYVVVKMNCSITVNITSQSIQDQKCTKKVKL 226

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560687|ref|XP_003548621.1| PREDICTED: uncharacterized protein LOC100799820 [Glycine max]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/204 (50%), Positives = 143/204 (70%), Gaps = 2/204 (0%)

Query: 19  GDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNWTI 78
             DE+           ++ IK C C   + ++L  +++I+LIFTVFRVK+P I +N+  I
Sbjct: 18  SSDEDNTTPHPQTQGHKKLIKRCAC-PLISLLLIAIVIIVLIFTVFRVKDPVITMNSIKI 76

Query: 79  TKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLV 138
           TKL+LVN    +PG N+SL+AD+SVKNPNVASF+Y +T  T LY+ G +VGEARGPPG  
Sbjct: 77  TKLQLVNTMSQQPGANMSLVADVSVKNPNVASFRYSNTT-TSLYYHGVIVGEARGPPGRA 135

Query: 139 RAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKF 198
           +A RTLRMN+T+D+IT R +SSP+   D+ SG+L + S++RV G+  ILNL KRHVVVK 
Sbjct: 136 KARRTLRMNVTIDVITARVISSPDFVTDLGSGLLTMSSFSRVPGQVKILNLIKRHVVVKM 195

Query: 199 NCSSQLNTTSLQIYQFNCKRKVQF 222
           NC++  N ++  I + +CKRKV+ 
Sbjct: 196 NCTTTFNISTQAIKEQSCKRKVKL 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639066|gb|ACU19833.1| unknown [Glycine max]

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/210 (50%), Positives = 147/210 (70%), Gaps = 5/210 (2%)

Query: 13  DRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIR 72
           +R SS   DE+  A        ++ IK C C   + ++L  +++I+LIFTVFRVK+P I 
Sbjct: 15  ERQSS---DEDNTAPHPQTQGHKKLIKRCAC-PLISLLLIAIVIIVLIFTVFRVKDPVIT 70

Query: 73  LNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEAR 132
           +N+  ITKL+LVN    +PG N+SL+AD+SVKNPNVASF+Y +T  T LY+ G +VGEAR
Sbjct: 71  MNSIKITKLQLVNTMSQQPGANMSLVADVSVKNPNVASFRYSNTT-TSLYYHGVIVGEAR 129

Query: 133 GPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTRVGGRANILNLFKR 192
           GPPG  +A RTLRMN+T+D+I  R +SSP+   D+ SG+L + S++RV G+  ILNL KR
Sbjct: 130 GPPGRAKARRTLRMNVTIDVIAARVISSPDFVTDLGSGLLTMSSFSRVPGQVKILNLIKR 189

Query: 193 HVVVKFNCSSQLNTTSLQIYQFNCKRKVQF 222
           HVVVK NC++  N ++  I + +CKRKV+ 
Sbjct: 190 HVVVKMNCTTTFNISTQAIKEQSCKRKVKL 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495333|ref|XP_004159802.1| PREDICTED: uncharacterized protein LOC101226205 [Cucumis sativus]

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 149/225 (66%), Gaps = 9/225 (4%)

Query: 1   MAEKKKAPG---ADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILI 57
           M +K +A     A  +RLSS   +  +      + +R+R IK C  I ALL+I  IVI+I
Sbjct: 1   MVDKDQAQPLTPATLNRLSSDNGETRL---HLKRIQRKRFIKCCSFIVALLMIPTIVIII 57

Query: 58  ILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTI 117
           IL+FT+F++K+P I++N  +ITKLEL+N  IPKPG N+SL AD+SVKNPN+ASFKY +T 
Sbjct: 58  ILMFTLFQIKDPIIQMNRVSITKLELINNVIPKPGSNVSLTADVSVKNPNMASFKYSNT- 116

Query: 118 ITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSY 177
            T L+    ++GE RGP G  +A +T+RMN+T+D++ DR +S  NL+ D+  G + L S+
Sbjct: 117 TTTLFINETVIGEVRGPSGKAKARQTVRMNVTIDIVADRVLS--NLNNDVSLGKVRLRSF 174

Query: 178 TRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF 222
           +R+ G+  +L+   R+VVVK NC+  +N  S  I    CKRK++ 
Sbjct: 175 SRIPGKVKLLHFIGRNVVVKMNCTFVINIFSKSIEDQKCKRKMKM 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824675|ref|XP_002880220.1| hypothetical protein ARALYDRAFT_483760 [Arabidopsis lyrata subsp. lyrata] gi|297326059|gb|EFH56479.1| hypothetical protein ARALYDRAFT_483760 [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 127/193 (65%), Gaps = 5/193 (2%)

Query: 33  RRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNWTITKLELVNG--TIPK 90
           RR+  IK   C+ A  +IL I I++ L+FTVFRVK+P I++N   +  L+ V G   +  
Sbjct: 31  RRKNRIKCLICVIATSIIL-ITIVLTLVFTVFRVKDPIIKMNGVMVNGLDSVTGINQVQL 89

Query: 91  PGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTV 150
            G NIS+I D+SVKNPN+ASFKY +T  T +Y++G LVGEA G PG  R  RT RMNLTV
Sbjct: 90  LGTNISMIVDVSVKNPNMASFKYSNTT-TDIYYKGTLVGEAHGLPGKARPHRTSRMNLTV 148

Query: 151 DLITDRAMSSPNLSADI-ESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSL 209
           D++ DR +S P L  ++  SG++ + SYTRVGG+  IL + K+HV VK NC+  +N T  
Sbjct: 149 DIMIDRILSDPGLGRELTRSGLVNMWSYTRVGGKVKILGIVKKHVTVKMNCTMAVNITGQ 208

Query: 210 QIYQFNCKRKVQF 222
            I   +CK+K+  
Sbjct: 209 AIQDVDCKKKIDL 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225931|ref|NP_182138.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|3702334|gb|AAC62891.1| hypothetical protein [Arabidopsis thaliana] gi|21805750|gb|AAM76770.1| hypothetical protein [Arabidopsis thaliana] gi|50058829|gb|AAT69159.1| hypothetical protein At2g46150 [Arabidopsis thaliana] gi|330255555|gb|AEC10649.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 125/193 (64%), Gaps = 5/193 (2%)

Query: 33  RRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNWTITKLELVNGT--IPK 90
           R R  IK   C+ A  +IL  ++L  L+FTVFRVK+P I++N   +  L+ V GT  +  
Sbjct: 31  RSRNRIKCSICVTATSLILTTIVLT-LVFTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQL 89

Query: 91  PGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTV 150
            G NIS+I D+SVKNPN ASFKY +T  T +Y++G LVGEA G PG  R  RT RMN+TV
Sbjct: 90  LGTNISMIVDVSVKNPNTASFKYSNT-TTDIYYKGTLVGEAHGLPGKARPHRTSRMNVTV 148

Query: 151 DLITDRAMSSPNLSADIE-SGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSL 209
           D++ DR +S P L  +I  SG++ + SYTRVGG+  I+ + K+HV VK NC+  +N T  
Sbjct: 149 DIMLDRILSDPGLGREISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQ 208

Query: 210 QIYQFNCKRKVQF 222
            I   +CK+K+  
Sbjct: 209 AIQDVDCKKKIDL 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072044|ref|XP_002303614.1| predicted protein [Populus trichocarpa] gi|222841046|gb|EEE78593.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/222 (43%), Positives = 142/222 (63%), Gaps = 13/222 (5%)

Query: 1   MAEKKK----APGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVIL 56
           MAE ++    AP A   R     D+E  M     K RRR  IK C CI A+L+I+A+ I+
Sbjct: 1   MAETEQVKPLAPAAFQIR----SDEEETMPVQL-KTRRRNCIKCCGCITAMLLIVAVTIV 55

Query: 57  IILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDT 116
           ++++ TVF VK+P I++N   + +LEL NGT+ +  VN++L+AD+SVKNPN ASFK+ + 
Sbjct: 56  VLVL-TVFHVKDPVIKMNRVFVQRLELANGTL-RTDVNVTLLADVSVKNPNAASFKF-EK 112

Query: 117 IITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIES-GILVLD 175
             T +Y+ G +VGEA  PPG+ +A RTL MN+TVDLI  + ++ P   +DI S G L + 
Sbjct: 113 GTTTIYYGGAVVGEANTPPGMAKARRTLHMNVTVDLIPAKLLAVPRSFSDIRSAGELNMT 172

Query: 176 SYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCK 217
           S T + G+  IL+ FK+++VV  NC+   N  S +I+  NCK
Sbjct: 173 SSTIISGKVRILHTFKKYIVVGVNCTVTYNLASREIHGGNCK 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2062917	221	AT2G46150 "AT2G46150" [Arabido	0.716	0.719	0.496	3.9e-37
TAIR|locus:2080320	235	AT3G54200 "AT3G54200" [Arabido	0.702	0.663	0.310	3.5e-20
TAIR|locus:1006230721	214	AT1G64065 "AT1G64065" [Arabido	0.693	0.719	0.278	3.9e-12
TAIR|locus:2128464	228	AT4G23610 "AT4G23610" [Arabido	0.684	0.666	0.270	5e-12
TAIR|locus:2138136	187	AT4G23930 "AT4G23930" [Arabido	0.671	0.796	0.276	2e-10
TAIR|locus:504955821	189	AT3G05975 "AT3G05975" [Arabido	0.707	0.830	0.248	3.6e-09
TAIR|locus:2051774	209	AT2G44000 "AT2G44000" [Arabido	0.545	0.578	0.296	2.7e-07
TAIR|locus:2014250	342	AT1G64450 [Arabidopsis thalian	0.490	0.318	0.324	5.6e-07
TAIR|locus:2018154	227	AT1G52330 "AT1G52330" [Arabido	0.657	0.643	0.237	0.00034
TAIR|locus:2142040	215	AT4G13270 "AT4G13270" [Arabido	0.666	0.688	0.215	0.00095

TAIR|locus:2062917 AT2G46150 "AT2G46150" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 81/163 (49%), Positives = 110/163 (67%)

Query:    61 FTVFRVKNPKIRLNNWTITKLELVNGT--IPKPGVNISLIADMSVKNPNVASFKYGDTII 118
             FTVFRVK+P I++N   +  L+ V GT  +   G NIS+I D+SVKNPN ASFKY +T  
Sbjct:    58 FTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTT- 116

Query:   119 TGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIE-SGILVLDSY 177
             T +Y++G LVGEA G PG  R  RT RMN+TVD++ DR +S P L  +I  SG++ + SY
Sbjct:   117 TDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWSY 176

Query:   178 TRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKV 220
             TRVGG+  I+ + K+HV VK NC+  +N T   I   +CK+K+
Sbjct:   177 TRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCKKKI 219

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2080320 AT3G54200 "AT3G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 49/158 (31%), Positives = 93/158 (58%)

Query:    61 FTVFRVKNPKIRLNNWTITKLEL-VNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIIT 119
             FT+F+ K P   +++ T+ +L+  VN  + K  +N++L  D+S+KNPN   F Y D+   
Sbjct:    74 FTLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSY-DSSSA 132

Query:   120 GLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYTR 179
              L +RG ++GEA  P   + A +T+ +N+T+ L+ DR +S   L +D+ +G++ L+++ +
Sbjct:   133 LLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVK 192

Query:   180 VGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCK 217
             V G+  +L +FK  V    +C   ++ +   +   +CK
Sbjct:   193 VTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCK 230

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:1006230721 AT1G64065 "AT1G64065" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 44/158 (27%), Positives = 80/158 (50%)

Query:    62 TVF-RVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITG 120
             ++F R+  P+I   + +   L    G    P  N +L++D+S++N N  +F++ D+ +  
Sbjct:    59 SIFLRISKPEIETRSISTRDLRS-GGNSTNPYFNATLVSDISIRNSNFGAFEFEDSTLRV 117

Query:   121 LYHRGDLVGEARGPPGLVRAWRTLRMN-LTVDLITDRAMSSPNLSADIESGILVLDSYTR 179
             +Y    +VGE +     V A +T+R+  + V++ + R + + +L  D+  G L L S   
Sbjct:   118 VYADHGVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDLRLGFLELRSVAE 177

Query:   180 VGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCK 217
             V GR  +L   KR  V   +C+ +LN T   I    C+
Sbjct:   178 VRGRIKVLGR-KRWKVSVMSCTMRLNLTGRFIQNLLCE 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2128464 AT4G23610 "AT4G23610" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 43/159 (27%), Positives = 84/159 (52%)

Query:    62 TVFRVKNPKIRLNNWTIT-KLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITG 120
             TVF + +P + +++ +   + + VNG +     N ++  ++S+ NPN A F   +  ++ 
Sbjct:    72 TVFHLHSPNLTVDSISFNQRFDFVNGKV-NTNQNTTVSVEISLHNPNPALFIVKNVNVS- 129

Query:   121 LYHRGDLV--GEARGPPGLVRAWRTLRMNLTVDLITDRAMSS-PNLSADIESGILVLDSY 177
              YH G+LV  GE+      + A RT++MNLT +++  + ++S P L  D+    + L S 
Sbjct:   130 FYH-GELVVVGESIRRSETIPAKRTVKMNLTAEIVKTKLLASLPGLMEDLNGRGVDLKSS 188

Query:   178 TRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNC 216
               V GR   + +F++ V ++ +C  ++ T +     F C
Sbjct:   189 VEVRGRVKKMKIFRKTVHLQTDCFMKMTTNNFLTPTFQC 227

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138136 AT4G23930 "AT4G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 45/163 (27%), Positives = 80/163 (49%)

Query:    62 TVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGL 121
             TVFR ++P+I     ++T +++ + ++    V+ +     +V+NPN A+F + + +I  L
Sbjct:    31 TVFRPRDPEI-----SVTSVKVPSFSVANSSVSFTFSQFSAVRNPNRAAFSHYNNVIQ-L 84

Query:   122 YHRGDLVGEARGPPGLVRAWRTLRMNLT--VDLITDRAMSSPNLSA-----DIESGILV- 173
             ++ G+ +G    P G + + RT RM  T  V      A SS  +SA        SG  V 
Sbjct:    85 FYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASSSQISAAQFQNSDRSGSTVE 144

Query:   174 LDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNC 216
             ++S   + GR  +L LF   +  K NC   ++++   I    C
Sbjct:   145 IESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSIVAVRC 187

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955821 AT3G05975 "AT3G05975" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 40/161 (24%), Positives = 85/161 (52%)

Query:    63 VFRVKNPKIRLNNWTITKLELVNGTIP-KPGVNISLIADMSVKNPNVASFKYGDTIITGL 121
             VF+ K+P ++  + T+  +   N ++P +  +N +L  +M +KNPNVA F+Y  T+   +
Sbjct:    30 VFKPKHPILQTVSSTVDGIS-TNISLPYEVQLNFTLTLEMLLKNPNVADFEY-KTVENLV 87

Query:   122 YHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSS-PNLSADIESGILVLDSYTRV 180
             Y+R  LVG    P   + A  ++ +   + L  D+ +++  ++  D+  G +V+++  ++
Sbjct:    88 YYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGKIVMETRAKM 147

Query:   181 GGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQ 221
              G+  +L +FK  +    +C+  L   S+ +    C  K +
Sbjct:   148 PGKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLKTK 188

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051774 AT2G44000 "AT2G44000" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 37/125 (29%), Positives = 68/125 (54%)

Query:    94 NISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLI 153
             N +L  ++ ++NPN+  F++  +    LY+ GD+VGE R     V ++  LR  ++ ++ 
Sbjct:    88 NATLAMEIRIENPNLGFFEFPTSRGEILYN-GDVVGEMRINGQRVASFGDLRTEVSAEVA 146

Query:   154 TDRAMSSPN-LSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIY 212
                   SP  L  DIE  +++L++  ++ G  ++ +L KR V +K  C  QLN +   I+
Sbjct:   147 YRGNQKSPVWLKNDIERRLIILETRAKLRGEVHLKDLNKRTVNLK--CLMQLNLSDDVIH 204

Query:   213 QFNCK 217
             +  CK
Sbjct:   205 RLWCK 209

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014250 AT1G64450 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
 Identities = 38/117 (32%), Positives = 56/117 (47%)

Query:    61 FTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITG 120
             FTVF+ K+PKI +N   +    + N T      N S    ++V+NPN A F + D+ I  
Sbjct:    38 FTVFKPKDPKISVNAVQLPSFAVSNNT-----ANFSFSQYVAVRNPNRAVFSHYDSSIQL 92

Query:   121 LYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSA-DIESGILVLDS 176
             LY  G+ VG    P G + + R   M  T   +    +S P+ SA    S  ++ DS
Sbjct:    93 LYS-GNQVGFMFIPAGKIDSGRIQYMAATFT-VHSFPISPPSSSAISTVSAAVIPDS 147

GO:0005576 "extracellular region" evidence=ISM

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2018154 AT1G52330 "AT1G52330" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 0.00034, P = 0.00034
 Identities = 37/156 (23%), Positives = 75/156 (48%)

Query:    63 VFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLY 122
             +F   +P+I++    I+ + +     P P ++++L+  + V N +V SF + D  +T + 
Sbjct:    61 IFWPSDPRIKIIRVKISHVHVHRR--PVPSIDMTLLVTLKVSNADVYSFDFTDLDVT-ID 117

Query:   123 HRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPN---LSADIESGILVLDSYTR 179
             +RG  +G      G V A+ +  ++   +L  D  M  P+   L  D+  G +  D+ T 
Sbjct:   118 YRGKTLGHVSSDGGHVTAFGSSYLDAEAEL--DGVMVFPDVIHLIHDLAKGSVEFDTVTE 175

Query:   180 VGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFN 215
               G+  +L  F+  + V+ N S       +++Y F+
Sbjct:   176 TNGKLGVL-FFRFPLKVR-NLSFYSIIWFIKLYTFS 209

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2142040 AT4G13270 "AT4G13270" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00095, P = 0.00095
 Identities = 33/153 (21%), Positives = 73/153 (47%)

Query:    68 NPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDL 127
             +P I ++   +  + +V+    K  +++S    + V+N +  S  Y D+++  + +RG  
Sbjct:    67 DPDITVSRINLNHISVVDSH--KIALDLSFSLTIKVRNRDFFSLDY-DSLVVSIGYRGRE 123

Query:   128 VGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSP-NLSADIESGILVLDSYTRVGGRANI 186
             +G  +   G ++A  +  ++ T++L     +     L  D+  G++  D+  +V G   +
Sbjct:   124 LGLVKSKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIAQVQGDLGV 183

Query:   187 LNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRK 219
             L LF   +  K +C   +N  + +I   +C RK
Sbjct:   184 L-LFNIPIQGKVSCEVYVNVNNQKISHQDCHRK 215


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       187   0.00085  110 3  11 22  0.44    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.15u 0.11s 15.26t   Elapsed:  00:00:00
  Total cpu time:  15.15u 0.11s 15.26t   Elapsed:  00:00:00
  Start:  Fri May 10 09:11:26 2013   End:  Fri May 10 09:11:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021536 hypothetical protein (217 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
PLN03160	219	PLN03160, PLN03160, uncharacterized protein; Provi	3e-88
pfam03168	98	pfam03168, LEA_2, Late embryogenesis abundant prot	1e-06

>gnl|CDD|215609 PLN03160, PLN03160, uncharacterized protein; Provisional

 Score =  259 bits (663), Expect = 3e-88
 Identities = 121/226 (53%), Positives = 154/226 (68%), Gaps = 11/226 (4%)

Query: 1   MAEKKK----APGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVIL 56
           MAE ++    AP A   RL S   DE    +   K RRR  IK C CI A L+ILA  IL
Sbjct: 1   MAETEQVRPLAPAAF--RLRS---DEEEATNHLKKTRRRNCIKCCGCITATLLILATTIL 55

Query: 57  IILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDT 116
           + L+FTVFRVK+P I++N  T+TKLEL+N T  +PG NI+LIAD+SVKNPNVASFKY +T
Sbjct: 56  V-LVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNT 114

Query: 117 IITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDS 176
             T +Y+ G +VGEAR PPG  +A RT+RMN+TVD+I D+ +S P L  DI SG+L ++S
Sbjct: 115 T-TTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSVPGLLTDISSGLLNMNS 173

Query: 177 YTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF 222
           YTR+GG+  IL + K+HVVVK NC+  +N TS  I    CKR V  
Sbjct: 174 YTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRHVDL 219

Length = 219

>gnl|CDD|217400 pfam03168, LEA_2, Late embryogenesis abundant protein

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 7/103 (6%)

Query: 100 DMSVKNPNVASFKYGDTIITGLYHRGDLVGEA-RGPPGLVRAWRTLRMNLTVDLITDRAM 158
            + V+NPN     Y       L + G  +       PG V A  T  + + V +  D   
Sbjct: 1   TLRVRNPNSFPLPYDGLSYD-LSYNGQELASGTSPQPGTVPAGGTTTLEVPVTVSLDDLA 59

Query: 159 SSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCS 201
               L   +  G   L+    + GR  +    K    V  +  
Sbjct: 60  R--LLKDLLAVG---LELPYTLRGRLKVGGPVKGSRTVPLSKE 97

Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.43
smart00769	100	WHy Water Stress and Hypersensitive response.	98.77
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	98.39
COG5608	161	LEA14-like dessication related protein [Defense me	97.61
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	97.49
PLN03160	219	uncharacterized protein; Provisional	94.4
PF06072	60	Herpes_US9: Alphaherpesvirus tegument protein US9;	91.4

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=9.2e-53  Score=353.42  Aligned_cols=215  Identities=56%  Similarity=0.891  Sum_probs=198.1

Q ss_pred             CCccC----CCCCCCcCCCCCCCCchhhcccchhhhcccCceeEeehHHHHHHHHHHHHHHheeeEEeeecCCeEEEEeE
Q 048098            1 MAEKK----KAPGADHDRLSSGGDDENIMASWAAKARRRRSIKICCCIAALLVILAIVILIILIFTVFRVKNPKIRLNNW   76 (222)
Q Consensus         1 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~lv~l~~i~~lil~~lv~rPk~P~~~v~s~   76 (222)
                      |||++    |||++.  +.||  |||+.+ +.+.++|+++|.+||+|+++++++|++++ ++++|++||||.|+|+|+++
T Consensus         1 ~~~~~~~~p~a~~~~--~~~~--d~~~~~-~~~~~~~r~~~~~c~~~~~a~~l~l~~v~-~~l~~~vfrPk~P~~~v~~v   74 (219)
T PLN03160          1 MAETEQVRPLAPAAF--RLRS--DEEEAT-NHLKKTRRRNCIKCCGCITATLLILATTI-LVLVFTVFRVKDPVIKMNGV   74 (219)
T ss_pred             CCccccCCCCCCCcc--cccC--chhhcC-cchhccccccceEEHHHHHHHHHHHHHHH-HheeeEEEEccCCeEEEEEE
Confidence            99999    999999  9999  777766 77766778888999999888888888888 88889999999999999999


Q ss_pred             EEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcCCceeecCceEEEEEEEEEeeec
Q 048098           77 TITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPGLVRAWRTLRMNLTVDLITDR  156 (222)
Q Consensus        77 ~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~v~~~~~~  156 (222)
                      ++++|++++++.+...+|+++.++++++|||+++|+|++++ +.++|+|+.+|++.+|+|+|++++++++++++.+.+.+
T Consensus        75 ~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~-~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~  153 (219)
T PLN03160         75 TVTKLELINNTTLRPGTNITLIADVSVKNPNVASFKYSNTT-TTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDK  153 (219)
T ss_pred             EEeeeeeccCCCCceeEEEEEEEEEEEECCCceeEEEcCeE-EEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEece
Confidence            99999997533456789999999999999999999999999 99999999999999999999999999999999988887


Q ss_pred             ccCCccccccccCCeEEEEEEEEEEEEEEEeEEEeEeeEEEEEeEEEEeCCCCeEEeceeeccccC
Q 048098          157 AMSSPNLSADIESGILVLDSYTRVGGRANILNLFKRHVVVKFNCSSQLNTTSLQIYQFNCKRKVQF  222 (222)
Q Consensus       157 l~~~~~l~~d~~~G~v~l~~~~~v~~rv~vlg~~~~~~~~~v~C~~~v~~~~~~v~~~~C~~k~k~  222 (222)
                      +..+++|.+|+++|.++|+++++++||++++++++++++++++|++.|+..+.++++++|+.++++
T Consensus       154 ~~~~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~~~~  219 (219)
T PLN03160        154 ILSVPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRHVDL  219 (219)
T ss_pred             eccchhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEecccccC
Confidence            776788999999999999999999999999999999999999999999999999999999999985

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.43  E-value=2.1e-13  Score=100.01  Aligned_cols=98  Identities=23%  Similarity=0.326  Sum_probs=73.7

Q ss_pred             EEEEeCCCeEEEEECCCeEEEEEECCeEEe-eeEcCCceeecCceEEEEEEEEEeeecccCCccccccccCCeEEEEEEE
Q 048098          100 DMSVKNPNVASFKYGDTIITGLYHRGDLVG-EARGPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGILVLDSYT  178 (222)
Q Consensus       100 ~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg-~~~vp~f~q~~~~~~~v~~~v~~~~~~l~~~~~l~~d~~~G~v~l~~~~  178 (222)
                      +++++|||.++++|++.+ ++++|+|..+| ....++|+|++++++.+.+++.++...+.  ..+.++. +|..++++..
T Consensus         1 ~l~v~NPN~~~i~~~~~~-~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~--~~l~~~~-~~~~~~~v~~   76 (101)
T PF03168_consen    1 TLSVRNPNSFGIRYDSIE-YDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLP--RLLKDLL-AGRVPFDVTY   76 (101)
T ss_dssp             EEEEEESSSS-EEEEEEE-EEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHH--HHHHHHH-HTTSCEEEEE
T ss_pred             CEEEECCCceeEEEeCEE-EEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHH--HHHHhhh-ccccceEEEE
Confidence            578999999999999999 99999999999 77889999999999999998888775542  3444455 6677888888


Q ss_pred             EEEEEEEEe-EEEeEeeEEEEEeE
Q 048098          179 RVGGRANIL-NLFKRHVVVKFNCS  201 (222)
Q Consensus       179 ~v~~rv~vl-g~~~~~~~~~v~C~  201 (222)
                      +++++++++ .....+....++|+
T Consensus        77 ~~~g~~~v~~~~~~~~~~v~~~~~  100 (101)
T PF03168_consen   77 RIRGTFKVLGTPIFGSVRVPVSCE  100 (101)
T ss_dssp             EEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred             EEEEEEEEcccceeeeEEEeEEeE
Confidence            999999963 33233444455553

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=98.77  E-value=8.9e-08  Score=70.89  Aligned_cols=83  Identities=19%  Similarity=0.252  Sum_probs=66.6

Q ss_pred             ceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcC-CceeecCceEEEEEEEEEeeecccCCccccccccC
Q 048098           91 PGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGP-PGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIES  169 (222)
Q Consensus        91 ~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~v~~~~~~l~~~~~l~~d~~~  169 (222)
                      ..++.++.+.++++|||-+.+.|.+.+ ..++|+|..+|++..+ ++.+++++++.+.+++.+.. ..  ...+..++.+
T Consensus        11 ~~~~~~~~l~l~v~NPN~~~l~~~~~~-y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~-~~--~~~~~~~l~~   86 (100)
T smart00769       11 SGLEIEIVLKVKVQNPNPFPIPVNGLS-YDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNL-FL--AEALIWHIAN   86 (100)
T ss_pred             cceEEEEEEEEEEECCCCCccccccEE-EEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeeh-hH--hHHHHHhhcc
Confidence            367889999999999999999999999 9999999999999996 79999999999999988732 22  1455566655


Q ss_pred             Ce-EEEEEE
Q 048098          170 GI-LVLDSY  177 (222)
Q Consensus       170 G~-v~l~~~  177 (222)
                      |. ++.+++
T Consensus        87 ~~~~~y~l~   95 (100)
T smart00769       87 GEEIPYRLD   95 (100)
T ss_pred             CCCccEEEE
Confidence            53 444433

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=98.39  E-value=1.4e-05  Score=67.65  Aligned_cols=90  Identities=12%  Similarity=0.217  Sum_probs=66.1

Q ss_pred             HheeeEEeeecCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcCCc
Q 048098           57 IILIFTVFRVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPPG  136 (222)
Q Consensus        57 lil~~lv~rPk~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~f  136 (222)
                      |++|||  -||.-.++-.++......++..   ...+..++.-.+.+.|||++.+...+.. +.+.|....+|.+.....
T Consensus        91 L~iFFL--fPRsV~v~~~gv~s~~V~f~~~---~~~v~l~itn~lNIsN~NFy~V~Vt~~s-~qv~~~~~VVG~~~~~~~  164 (238)
T PF07092_consen   91 LVIFFL--FPRSVTVSPVGVKSVTVSFNPD---KSTVQLNITNTLNISNPNFYPVTVTNLS-IQVLYMKTVVGKGKNSNI  164 (238)
T ss_pred             heEEEE--eCcEEEEecCcEEEEEEEEeCC---CCEEEEEEEEEEEccCCCEEEEEEEeEE-EEEEEEEeEEeeeEecce
Confidence            555554  4887666555544444445421   2356777788999999999999999999 999999999999987654


Q ss_pred             -eeecCceEEEEEEEEE
Q 048098          137 -LVRAWRTLRMNLTVDL  152 (222)
Q Consensus       137 -~q~~~~~~~v~~~v~~  152 (222)
                       .+++++.+.+..++..
T Consensus       165 ~~I~Prs~~q~~~tV~t  181 (238)
T PF07092_consen  165 TVIGPRSSKQVNYTVKT  181 (238)
T ss_pred             EEecccCCceEEEEeeE
Confidence             6788888777766543

The function of this family is unknown.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=97.61  E-value=0.0064  Score=48.14  Aligned_cols=91  Identities=14%  Similarity=0.187  Sum_probs=66.9

Q ss_pred             EEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEc-CCceeecCceEEEEEEEEEeeecccCCccccccccCCeE
Q 048098           94 NISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARG-PPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESGIL  172 (222)
Q Consensus        94 n~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~~~~v~~~v~~~~~~l~~~~~l~~d~~~G~v  172 (222)
                      ...+-.++.++|||-+.+-..... ..++-+|..+|++.. .++..++++..++.+++.++..++-  ..+...+.+|+=
T Consensus        49 ~~EiV~t~KiyNPN~fPipVtgl~-y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~k--e~w~~hi~ngEr  125 (161)
T COG5608          49 ETEIVGTLKIYNPNPFPIPVTGLQ-YAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIK--EWWVTHIENGER  125 (161)
T ss_pred             ceEEEEEEEecCCCCcceeeeceE-EEEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHH--HHHHHHhhccCc
Confidence            456678899999999999888898 999999999999976 5688999999999999887765442  234446666653


Q ss_pred             -EEEEEEEEEEEEEEeEE
Q 048098          173 -VLDSYTRVGGRANILNL  189 (222)
Q Consensus       173 -~l~~~~~v~~rv~vlg~  189 (222)
                       ++.  .++.+.+++++.
T Consensus       126 s~Ir--~~i~~~v~vg~~  141 (161)
T COG5608         126 STIR--VRIKGVVKVGGM  141 (161)
T ss_pred             ccEE--EEEEEEEEEccE
Confidence             333  334455555543

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=97.49  E-value=0.00066  Score=61.12  Aligned_cols=56  Identities=14%  Similarity=0.194  Sum_probs=37.9

Q ss_pred             ecCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEe
Q 048098           66 VKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVG  129 (222)
Q Consensus        66 Pk~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg  129 (222)
                      -.+|--.|+=+.+++.-.+       .--+-|+++|.+.|||++.|..++.+ ++++-+-.-+|
T Consensus       326 ttKpL~~v~v~~I~NVlaS-------~qELmfdl~V~A~NPn~~~V~I~d~d-ldIFAKS~yvg  381 (387)
T PF12751_consen  326 TTKPLTDVQVVSIQNVLAS-------EQELMFDLTVEAFNPNWFTVTIDDMD-LDIFAKSRYVG  381 (387)
T ss_pred             cCcccccceEEEeeeeeec-------cceEEEeeEEEEECCCeEEEEeccce-eeeEecCCccC
Confidence            3444444444444444333       33566778999999999999999999 99987655444

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>PLN03160 uncharacterized protein; Provisional

Probab=94.40  E-value=1  Score=37.94  Aligned_cols=47  Identities=9%  Similarity=0.138  Sum_probs=21.6

Q ss_pred             hhcccCceeEeehHHHHHHHHHHHHHHheeeEEeeec--CCeEEEEeEEE
Q 048098           31 KARRRRSIKICCCIAALLVILAIVILIILIFTVFRVK--NPKIRLNNWTI   78 (222)
Q Consensus        31 ~~~~~~~~~c~~~~~~~lv~l~~i~~lil~~lv~rPk--~P~~~v~s~~v   78 (222)
                      +||+++|+.|++.++++++++++++ +.+.|-.=.|+  --.++++++.+
T Consensus        33 r~~~~~c~~~~~a~~l~l~~v~~~l-~~~vfrPk~P~~~v~~v~l~~~~~   81 (219)
T PLN03160         33 RRNCIKCCGCITATLLILATTILVL-VFTVFRVKDPVIKMNGVTVTKLEL   81 (219)
T ss_pred             cccceEEHHHHHHHHHHHHHHHHhe-eeEEEEccCCeEEEEEEEEeeeee
Confidence            4555555666655544444444444 32223344554  23444444443

>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses

Probab=91.40  E-value=0.056  Score=35.93  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=12.3

Q ss_pred             hcccCceeEeehHHHH--HHHHHHHHHHheee
Q 048098           32 ARRRRSIKICCCIAAL--LVILAIVILIILIF   61 (222)
Q Consensus        32 ~~~~~~~~c~~~~~~~--lv~l~~i~~lil~~   61 (222)
                      ||+|+|..|.++++++  +.++++++|.+++|
T Consensus        27 ~RrRrc~~~v~~v~~~~~~c~~S~~lG~~~~~   58 (60)
T PF06072_consen   27 RRRRRCRLAVAIVFAVVALCVLSGGLGALVAW   58 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4455444344433332  22333443344444

The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.71
1xo8_A	151	AT1G01470; structural genomics, protein structure	98.4
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	98.0

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.71  E-value=6.3e-08  Score=77.65  Aligned_cols=102  Identities=16%  Similarity=0.118  Sum_probs=80.2

Q ss_pred             cCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcCC-ceeecCceEE
Q 048098           67 KNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGPP-GLVRAWRTLR  145 (222)
Q Consensus        67 k~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~~~~  145 (222)
                      ++|++++.++++.+++..         ..++.+.++++|||-+.+.+...+ ..+.-+|..++++..+. +.+++++++.
T Consensus        43 ~~PeV~v~~v~~~~~~l~---------~~~~~l~LrV~NPN~~pLpi~gi~-Y~L~vnG~~lasG~s~~~~tIpa~g~~~  112 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTRD---------GVDYHAKVSVKNPYSQSIPICQIS-YILKSATRTIASGTIPDPGSLVGSGTTV  112 (174)
T ss_dssp             CCCEEEEEEEEEEEECSS---------SEEEEEEEEEEECSSSCCBCCSEE-EEEEESSSCEEEEEESCCCBCCSSEEEE
T ss_pred             CCCEEEEEEeEEeccccc---------eEEEEEEEEEECCCCCCccccceE-EEEEECCEEEEEEecCCCceECCCCcEE
Confidence            789999999999877654         366778899999999999999999 89999999999999875 8999999999


Q ss_pred             EEEEEEEeeecccCCcccccccc-CCeEEEEEEEEEE
Q 048098          146 MNLTVDLITDRAMSSPNLSADIE-SGILVLDSYTRVG  181 (222)
Q Consensus       146 v~~~v~~~~~~l~~~~~l~~d~~-~G~v~l~~~~~v~  181 (222)
                      +.+++.+....+.   .+.+++. .+.++.++++++.
T Consensus       113 v~Vpv~v~~~~l~---~~~~~l~~~~~i~Y~L~g~L~  146 (174)
T 1yyc_A          113 LDVPVKVAYSIAV---SLMKDMCTDWDIDYQLDIGLT  146 (174)
T ss_dssp             EEEEEEESHHHHH---HTCCCCCSSEEECEEEEEEEE
T ss_pred             EEEEEEEEHHHHH---HHHHhcCCCCccceEEEEEEE
Confidence            9999988764332   3334443 3466666554443

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=98.40  E-value=4.3e-08  Score=76.93  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=76.8

Q ss_pred             cCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcC-CceeecCceEE
Q 048098           67 KNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGP-PGLVRAWRTLR  145 (222)
Q Consensus        67 k~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~  145 (222)
                      ++|++++.++++.+++..         ..++.+.++++|||-+.+.+...+ ..+.-+|..++++..+ ++..++++++.
T Consensus        20 ~~P~v~v~~v~~~~~~~~---------~~~~~~~l~V~NPN~~~lpi~gi~-y~l~vng~~lasG~~~~~~~ipa~g~~~   89 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNRD---------SVEYLAKVSVTNPYSHSIPICEIS-FTFHSAGREIGKGKIPDPGSLKAKDMTA   89 (151)
T ss_dssp             CSCCCBCSEEEECCCTTT---------EECEEEEEEEECSSSSCCCCEEEE-EEEESSSSCEEEEEEEECCCCSSSSEEE
T ss_pred             CCCEEEEEEeEEeccCcc---------eeEEEEEEEEECCCCCCcccccEE-EEEEECCEEEEEEecCCCcEECCCCcEE
Confidence            679988888887655433         457788999999999888888888 7887899999999986 58899999999


Q ss_pred             EEEEEEEeeecccCCccccccc-cCCeEEEEEEEEEE
Q 048098          146 MNLTVDLITDRAMSSPNLSADI-ESGILVLDSYTRVG  181 (222)
Q Consensus       146 v~~~v~~~~~~l~~~~~l~~d~-~~G~v~l~~~~~v~  181 (222)
                      +.+++.+....+   ..+.+++ ..+.++.++++++.
T Consensus        90 v~vpv~v~~~~l---~~~~~~l~~~~~i~Y~l~g~l~  123 (151)
T 1xo8_A           90 LDIPVVVPYSIL---FNLARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             EEECCCEEHHHH---HHHHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEEEEEHHHH---HHHHHhcccCCcccEEEEEEEE
Confidence            999888775433   2334444 34577766544443

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=98.00  E-value=5.5e-05  Score=58.11  Aligned_cols=90  Identities=13%  Similarity=0.120  Sum_probs=66.0

Q ss_pred             EEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeE-cCCceeecCceEEEEEEEEEeeecccCCccccccccCC-e
Q 048098           94 NISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEAR-GPPGLVRAWRTLRMNLTVDLITDRAMSSPNLSADIESG-I  171 (222)
Q Consensus        94 n~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~-vp~f~q~~~~~~~v~~~v~~~~~~l~~~~~l~~d~~~G-~  171 (222)
                      ...|.+.++++|||-+.+.+.... ..++.+|..+|++. ...+.+++.+++.+.+++.++..++..  .+.+.+.+| .
T Consensus        17 ~t~~~~~l~V~NPN~~~l~i~gl~-y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~--~~~~hi~nge~   93 (136)
T 3but_A           17 QTEIVALAKVRNEDVVPIVVSGYH-YTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE--WWVTHIANGEK   93 (136)
T ss_dssp             EEEEEEEEEEECCSSSCEEEEEEE-EEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT--HHHHHHHTTSE
T ss_pred             EEEEEEEEEEeCCCCcceeeeceE-EEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH--HHHHHhhcCCc
Confidence            566788899999999999998888 99999999999998 467899999999999998888665542  344444445 2


Q ss_pred             EEEEEEEEEEEEEEEeE
Q 048098          172 LVLDSYTRVGGRANILN  188 (222)
Q Consensus       172 v~l~~~~~v~~rv~vlg  188 (222)
                      -+++  .++..++.++|
T Consensus        94 s~l~--i~~~~~l~v~g  108 (136)
T 3but_A           94 TKIR--VAIKPTIEIGG  108 (136)
T ss_dssp             EEEE--EEEEEEEECC-
T ss_pred             eEEE--EEEEEEEEeCC
Confidence            2333  33444555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	98.55

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.55  E-value=4.8e-09  Score=80.55  Aligned_cols=104  Identities=16%  Similarity=0.223  Sum_probs=78.3

Q ss_pred             eecCCeEEEEeEEEeeEEeecCCCCCceEEEEEEEEEEEeCCCeEEEEECCCeEEEEEECCeEEeeeEcC-CceeecCce
Q 048098           65 RVKNPKIRLNNWTITKLELVNGTIPKPGVNISLIADMSVKNPNVASFKYGDTIITGLYHRGDLVGEARGP-PGLVRAWRT  143 (222)
Q Consensus        65 rPk~P~~~v~s~~v~~f~~~~~~~~~~~ln~~l~~~v~v~NPN~~~i~Y~~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~  143 (222)
                      +-+.|++++.++++.++...         ..++.+.++++|||-+++.....+ -+++.+|..++++..+ ++..+++++
T Consensus        18 ~~~kPev~l~~v~i~~v~~~---------~~~l~~~l~V~NPN~~~l~i~~l~-y~l~~~g~~ia~G~~~~~~~ipa~~~   87 (151)
T d1xo8a_          18 AIPKPEGSVTDVDLKDVNRD---------SVEYLAKVSVTNPYSHSIPICEIS-FTFHSAGREIGKGKIPDPGSLKAKDM   87 (151)
T ss_dssp             CCCSCCCBCSEEEECCCTTT---------EECEEEEEEEECSSSSCCCCEEEE-EEEESSSSCEEEEEEEECCCCSSSSE
T ss_pred             CCCCCeEEEEEEEeeecccc---------eEEEEEEEEEECCCCCceeeeeEE-EEEEECCEEEEeEecCCCcEEcCCCc
Confidence            45789999999988766554         556788899999999888888888 8899999999999876 578999999


Q ss_pred             EEEEEEEEEeeecccCCcccccccc-CCeEEEEEEEEEE
Q 048098          144 LRMNLTVDLITDRAMSSPNLSADIE-SGILVLDSYTRVG  181 (222)
Q Consensus       144 ~~v~~~v~~~~~~l~~~~~l~~d~~-~G~v~l~~~~~v~  181 (222)
                      +.+.+++.+....+   ..+.+|+. .+.++.++++.+.
T Consensus        88 ~~v~vpv~v~~~~l---~~~~~~i~~~~~i~Y~l~g~l~  123 (151)
T d1xo8a_          88 TALDIPVVVPYSIL---FNLARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             EEEEECCCEEHHHH---HHHHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEEEEEEEHHHH---HHHHHhhccCCCccEEEEEEEE
Confidence            99999887765333   23444543 4566655443333