Citrus Sinensis ID: 048165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTSY
Secondary Structure (PSIPRED)
ccccccccEEcccccccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcccccccccccccHHHHccHcccccccEEEEEEEEEcccHHHcccccccEEEEEEcccccHHHcccccccEEEcccccccccHHHHHcccccEEEcccccccccccHHccccc
Coil and Loop (DISEMBL)
LANLRYLQVLDlsanynitsgsltrlglanltnlkkldldgcgiTTIQGLAKLknlealdlssnyylhgsleglanltnlqvldlsgnqnlttlglanlpnlktldlrdcgittIQGIQQFTSY
Flexible Loop (DISEMBL)
LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTSY
Low Complexity Region (SEG)
LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTSY
Disordered region (IsUnstruct)
***LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQ*****
Disordered Region (DISOPRED)
LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT**
Disordered Region (DISEMBL)
LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTSY
Disordered Region (DISPRO)
*ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q8YA32	1778	Internalin-I OS=Listeria	yes	no	0.935	0.065	0.403	1e-08
Q5UP09	751	Putative F-box/LRR-repeat	N/A	no	0.75	0.123	0.357	2e-08
P23799	630	Putative adenylate cyclas	N/A	no	0.911	0.179	0.370	4e-08
P26337	630	Putative adenylate cyclas	N/A	no	0.959	0.188	0.357	1e-07
Q723X5	1775	Internalin-I OS=Listeria	yes	no	0.935	0.065	0.379	1e-06
Q0P5X1	1673	Leucine-rich repeat and I	yes	no	0.733	0.054	0.351	2e-06
Q6NUW5	250	Acidic leucine-rich nucle	yes	no	0.725	0.36	0.410	3e-06
Q9Y2I1	1504	Nischarin OS=Homo sapiens	yes	no	0.895	0.073	0.364	6e-06
Q6DIQ3	346	Protein phosphatase 1 reg	yes	no	0.943	0.338	0.367	8e-06
Q6YSF3	476	Acidic leucine-rich nucle	yes	no	0.709	0.184	0.354	8e-06

>sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlI PE=4 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 8/124 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L NL  LQ L LS N N+T+ +     + +L  LK L LDGCGIT+I  L  L  LE LD
Sbjct: 385 LNNLPKLQTLVLSDNENLTNIT----AITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLD 440

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQ 119
           L  N     S+  + +L  L  LD+S N NLTT+G L  LP L+ L++    ++ +  + 
Sbjct: 441 LKENQIT--SISEITDLPRLSYLDVSVN-NLTTIGDLKKLPLLEWLNVSSNRLSDVSTLT 497

Query: 120 QFTS 123
            F S
Sbjct: 498 NFPS 501

Unknown. A role in virulence could not be demonstrated.
Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q5UP09|YR753_MIMIV Putative F-box/LRR-repeat protein R753 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R753 PE=4 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
           GL    N++KLDL  C   T + L+ L N+E ++L S Y +  +  GL  L+N++ ++LS
Sbjct: 53  GLNMFANVRKLDLQECRCITNESLSALTNIETINLRSCYRITDN--GLEYLSNIKEINLS 110

Query: 87  GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQF 121
           G   +T  GL NL     +D+ +C   T++GI +F
Sbjct: 111 GCYEITDSGLRNLNKAVFVDISNCPQITVKGIVKF 145

Acanthamoeba polyphaga (taxid: 5757)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 11/124 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC---GITTIQGLAKLKNLE 57
           +  +R L+ L LS  +N+T G      L   +NL++LD+ GC   G   +  L  L NL+
Sbjct: 273 IGGVRSLEKLSLSGCWNVTKGLEE---LCKFSNLRELDISGCLVLGSAVV--LKNLINLK 327

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDC-GITTI 115
            L +S N      L GL  L NL+ L+LSG   +++LG +ANL NLK LD+  C  +   
Sbjct: 328 VLSVS-NCKNFKDLNGLERLVNLEKLNLSGCHGVSSLGFVANLSNLKELDISGCESLVCF 386

Query: 116 QGIQ 119
            G+Q
Sbjct: 387 DGLQ 390

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 7/126 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TIQGLAKLKNLEAL 59
           +  +R L+ L LS  +N+T G      L   +NL++LD+ GC +  +   L  L NL+ L
Sbjct: 273 IGGMRSLEKLSLSGCWNVTKGLEE---LCKFSNLRELDISGCLVLGSAVVLKNLINLKVL 329

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDC-GITTIQG 117
            +S N      L GL  L NL  L+LSG   +++LG +ANL NLK LD+  C  +    G
Sbjct: 330 SVS-NCKNFKDLNGLERLVNLDKLNLSGCHGVSSLGFVANLSNLKELDISGCESLVCFDG 388

Query: 118 IQQFTS 123
           +Q   +
Sbjct: 389 LQDLNN 394

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L NL  LQ L LS N ++T+ +     + ++  LK L LDGCGIT+I  L  L  LE LD
Sbjct: 382 LNNLPKLQTLILSDNKDLTNIN----AITDMPQLKTLALDGCGITSIGTLDNLPKLEKLD 437

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQ 119
           L  N     S+  + +L  L  LD+S N  LTT+G L  LP L+ L++    ++ +  + 
Sbjct: 438 LKENQLT--SISEINDLPRLSYLDVSVNY-LTTIGELKKLPLLEWLNVSSNRLSDVSTLT 494

Query: 120 QFTS 123
            F S
Sbjct: 495 NFPS 498

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|Q0P5X1|LRIQ1_MOUSE Leucine-rich repeat and IQ domain-containing protein 1 OS=Mus musculus GN=Lrriq1 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
           LA  +NL+ L L  CG+T++QGL+    L+ +D   N+    S E   NL NL V+ L+ 
Sbjct: 827 LAECSNLQILSLRRCGLTSLQGLSHCTRLKYIDAQENHIEAISCE---NLENLSVVLLNN 883

Query: 88  NQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQF 121
           N   +  G     NL++L+L    IT I G++  
Sbjct: 884 NLLTSIHGFDGCTNLQSLELSHNKITRISGLESL 917

Mus musculus (taxid: 10090)

>sp|Q6NUW5|AN32E_DANRE Acidic leucine-rich nuclear phosphoprotein 32 family member E OS=Danio rerio GN=anp32e PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 30  NLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLAN-LTNLQVLDLSGN 88
           +   L+ L +   G+T++  L  L  L  L+LS N  + G+LE LA    NL  L+LSGN
Sbjct: 40  DFKELEFLSMVNVGLTSLAKLPSLPKLRKLELSDNN-ISGTLETLAEKCANLTYLNLSGN 98

Query: 89  Q--NLTTL-GLANLPNLKTLDLRDCGITTIQGIQQ 120
           +   L+TL  L NL NLK+LDL +C ITT++  ++
Sbjct: 99  KIKELSTLEALQNLKNLKSLDLFNCEITTLEDYRE 133

Inhibits activity of protein phosphatase 2A (PP2A). Does not inhibit protein phosphatase 1. May play a role in cerebellar development and synaptogenesis process by modulating PP2A activity.

Danio rerio (taxid: 7955)

>sp|Q9Y2I1|NISCH_HUMAN Nischarin OS=Homo sapiens GN=NISCH PE=1 SV=3

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYY 66
           L  LDLS N    S S     +  +  ++ LDL   G+  +  L  L NL  LDLS N  
Sbjct: 289 LTTLDLSHN----SVSEIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKL 344

Query: 67  LHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
              SLEGL   L N++ L+L+GN   +  GL  L +L  LDLRD  I  ++ ++   S
Sbjct: 345 --SSLEGLHTKLGNIKTLNLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGS 400

Acts either as the functional imidazoline-1 receptor (I1R) candidate or as a membrane-associated mediator of the I1R signaling. Binds numerous imidazoline ligands that induces initiation of cell-signaling cascades triggering to cell survival, growth and migration. Its activation by the agonist rilmenidine induces an increase in phosphorylation of mitogen-activated protein kinases MAPK1 and MAPK3 in rostral ventrolateral medulla (RVLM) neurons that exhibited rilmenidine-evoked hypotension (By similarity). Blocking its activation with efaroxan abolished rilmenidine-induced mitogen-activated protein kinase phosphorylation in RVLM neurons (By similarity). Acts as a modulator of Rac-regulated signal transduction pathways (By similarity). Suppresses Rac1-stimulated cell migration by interacting with PAK1 and inhibiting its kinase activity (By similarity). Also blocks Pak-independent Rac signaling by interacting with RAC1 and inhibiting Rac1-stimulated NF-kB response element and cyclin D1 promoter activation (By similarity). Inhibits also LIMK1 kinase activity by reducing LIMK1 'Tyr-508' phosphorylation (By similarity). Inhibits Rac-induced cell migration and invasion in breast and colon epithelial cells (By similarity). Inhibits lamellipodia formation, when overexpressed (By similarity). Plays a role in protection against apoptosis. Involved in association with IRS4 in the enhancement of insulin activation of MAPK1 and MAPK3. When overexpressed, induces a redistribution of cell surface ITGA5 integrin to intracellular endosomal structures.

Homo sapiens (taxid: 9606)

>sp|Q6DIQ3|PP1R7_XENTR Protein phosphatase 1 regulatory subunit 7 OS=Xenopus tropicalis GN=ppp1r7 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 65/136 (47%), Gaps = 19/136 (13%)

Query: 1   LANLRYLQVLDLSAN--YNITS----GSLTRLGLAN-----------LTNLKKLDLDGCG 43
           L  LR LQ+LDLS N    I        L RL L N           LT L+ L+L    
Sbjct: 124 LETLRDLQILDLSFNLLRRIEGLESLSHLQRLYLVNNKISRIENFGTLTQLRLLELGSNR 183

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
           +  I+ L  L+ L++L L  N      L+ L  LTNL VL +  N+     GL NL NL+
Sbjct: 184 LRVIENLDSLRELDSLFLGKNKI--TKLQNLETLTNLTVLSVQSNRLTKIEGLQNLVNLR 241

Query: 104 TLDLRDCGITTIQGIQ 119
            L L D GI  I+G++
Sbjct: 242 ELYLSDNGIQVIEGLE 257

Regulatory subunit of protein phosphatase 1.

Xenopus tropicalis (taxid: 8364)

>sp|Q6YSF3|AN321_ORYSJ Acidic leucine-rich nuclear phosphoprotein 32-related protein 1 OS=Oryza sativa subsp. japonica GN=Os07g0607800 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGL--ANLTNLQVLDL 85
           L    +L+ L + G G+ ++ G  +L+NL  L LS N  + G L+ L  A L +L+ LDL
Sbjct: 46  LERYQSLEHLSIAGVGVASLAGFPRLRNLTRLTLSDN-RIAGGLDHLVAAGLASLRDLDL 104

Query: 86  SGNQNLTTLGLANLPNLK--TLDLRDCGITTIQ 116
           S N+      L+ L NL+  +LDL +C +T ++
Sbjct: 105 SNNRIQDVGDLSPLANLRLVSLDLYECPVTRVK 137

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.975	0.082	0.419	5e-08
296082109	682	unnamed protein product [Vitis vinifera]	0.975	0.177	0.419	7e-08
386828223	1098	Leucine Rich Repeat (LRR)-containing pro	0.733	0.082	0.451	7e-08
124004058	1165	Rab family protein [Microscilla marina A	0.903	0.096	0.403	9e-08
296082108	975	unnamed protein product [Vitis vinifera]	0.975	0.124	0.412	9e-08
343417958	389	leucine-rich repeat region [Trypanosoma	0.951	0.303	0.380	1e-07
358336464	572	acidic leucine-rich nuclear phosphoprote	0.75	0.162	0.397	1e-07
343414367	1699	leucine-rich repeat protein, putative [T	0.951	0.069	0.380	1e-07
290892518	1775	cell wall surface anchor family protein	0.935	0.065	0.411	2e-07
404406789	1775	internalin I [Listeria monocytogenes SLC	0.935	0.065	0.411	2e-07

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 10/131 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGI----TTIQGLAKLKNL 56
           L NLR L+VLDLS+  NI+S  L  + +  +T+LK L L   GI    T +QGL KLKNL
Sbjct: 688 LNNLRNLEVLDLSST-NISSSILQIVEV--MTSLKALSLRSNGINGSQTALQGLCKLKNL 744

Query: 57  EALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGIT 113
           + LDLS N +       L NLT+L+ LDLS N+   NL +   A L  L+ L L      
Sbjct: 745 QELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQ 804

Query: 114 TIQGIQQFTSY 124
           T   I  F  +
Sbjct: 805 TFPPISSFAKH 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082109|emb|CBI21114.3| unnamed protein product [Vitis vinifera]

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 10/131 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGI----TTIQGLAKLKNL 56
           L NLR L+VLDLS+  NI+S  L  + +  +T+LK L L   GI    T +QGL KLKNL
Sbjct: 244 LNNLRNLEVLDLSST-NISSSILQIVEV--MTSLKALSLRSNGINGSQTALQGLCKLKNL 300

Query: 57  EALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGIT 113
           + LDLS N +       L NLT+L+ LDLS N+   NL +   A L  L+ L L      
Sbjct: 301 QELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQ 360

Query: 114 TIQGIQQFTSY 124
           T   I  F  +
Sbjct: 361 TFPPISSFAKH 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386828223|ref|ZP_10115330.1| Leucine Rich Repeat (LRR)-containing protein [Beggiatoa alba B18LD] gi|386429107|gb|EIJ42935.1| Leucine Rich Repeat (LRR)-containing protein [Beggiatoa alba B18LD]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
           GL  L NL  LDL    ++ + GL  L NL +LDLS N   H S  GL  L NL  LDLS
Sbjct: 282 GLEMLVNLSALDLRNNQLSHVSGLEMLVNLSSLDLSDNQLSHIS--GLETLQNLSSLDLS 339

Query: 87  GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQ 119
           GNQ     GL  L NL +LDLR+  ++++ G++
Sbjct: 340 GNQLSRVSGLETLVNLSSLDLRENQLSSVSGLE 372

Source: Beggiatoa alba B18LD

Species: Beggiatoa alba

Genus: Beggiatoa

Family: Thiotrichaceae

Order: Thiotrichales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|124004058|ref|ZP_01688905.1| Rab family protein [Microscilla marina ATCC 23134] gi|123990637|gb|EAY30117.1| Rab family protein [Microscilla marina ATCC 23134]

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 7/119 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L NL  L+ +DLS N       LT   L NL+NL+ +DL    +  +  L  L NLE++D
Sbjct: 352 LQNLPNLESIDLSDN---QISDLT--PLQNLSNLQSIDLSNNQVNHLASLQYLPNLESID 406

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQ 119
           LS N      L  L NL +LQ +DLS NQ      L NLPNL+++DL D  I+ +  +Q
Sbjct: 407 LSDNQI--NDLAPLQNLGDLQSIDLSNNQIHDLTPLQNLPNLESIDLSDNQISDLTPLQ 463

Source: Microscilla marina ATCC 23134

Species: Microscilla marina

Genus: Microscilla

Family: Cytophagaceae

Order: Cytophagales

Class: Cytophagia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|296082108|emb|CBI21113.3| unnamed protein product [Vitis vinifera]

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 71/131 (54%), Gaps = 10/131 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGI----TTIQGLAKLKNL 56
           L NLR L+VLDLS+  NI+S  L  + +  +T+LK L L   GI    T +QGL KL+NL
Sbjct: 238 LNNLRNLEVLDLSST-NISSSILQIVEV--MTSLKALSLRSNGINGSQTALQGLCKLRNL 294

Query: 57  EALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGIT 113
           + LDLS N +       L NLT+L+ LDLS N+   NL +   A L  L+ L L      
Sbjct: 295 QELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQ 354

Query: 114 TIQGIQQFTSY 124
           T   I  F  +
Sbjct: 355 TFPPISSFAKH 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343417958|emb|CCD19884.1| leucine-rich repeat region [Trypanosoma vivax Y486]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 8/126 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC-GITTIQGLAKLKNLEAL 59
           L+ L  L++LDLS    IT  S     L+ L++L+ LDL  C GIT +  L+KL +L  L
Sbjct: 39  LSVLSSLRMLDLSHCTGITDVS----PLSELSSLRTLDLSHCTGITDVSPLSKLSSLRTL 94

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDC-GITTIQG 117
           DLS    +   +  L+ L++L++LDLS    +T +  L+ L +L+TLDL  C GIT +  
Sbjct: 95  DLSHCTAI-TDVSPLSKLSSLRMLDLSHCTGITDVSPLSKLSSLRTLDLSHCTGITDVSP 153

Query: 118 IQQFTS 123
           + + +S
Sbjct: 154 LSELSS 159

Source: Trypanosoma vivax Y486

Species: Trypanosoma vivax

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|358336464|dbj|GAA54963.1| acidic leucine-rich nuclear phosphoprotein 32-related protein [Clonorchis sinensis]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 27  GLAN-LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL 85
           GL++  TNL+ L+L   G+  + GL KL +L+ LDLS+N  + G LE L N  NL+ L+L
Sbjct: 37  GLSDEFTNLEVLNLVSVGLEDLSGLPKLPSLKILDLSNN-AISGGLEALLNCPNLETLNL 95

Query: 86  SGNQNLTT---LGLANLPNLKTLDLRDCGITTIQGIQQ 120
           S N+  T    L LA L  L ++DL +C +T ++  ++
Sbjct: 96  SANKVATIDALLPLAKLSCLSSIDLFNCEVTGLENYRK 133

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|343414367|emb|CCD21012.1| leucine-rich repeat protein, putative [Trypanosoma vivax Y486]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 8/126 (6%)

Query: 1    LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC-GITTIQGLAKLKNLEAL 59
            L+ L  L+ LDLS    IT  S     L+ L++L+ LDL  C GIT +  L+KL +L  L
Sbjct: 1021 LSELSSLRTLDLSHCTGITDVS----PLSELSSLRTLDLSHCTGITDVSPLSKLSSLRTL 1076

Query: 60   DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDC-GITTIQG 117
            DLS    +   +  L+ L++L+ LDLS    +T +  L+ L +L+TLDL  C GIT +  
Sbjct: 1077 DLSHCTGI-TDVSPLSELSSLRTLDLSHCTGITDVSPLSELSSLRTLDLSHCTGITDVSP 1135

Query: 118  IQQFTS 123
            + + +S
Sbjct: 1136 LSELSS 1141

Source: Trypanosoma vivax Y486

Species: Trypanosoma vivax

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|290892518|ref|ZP_06555511.1| cell wall surface anchor family protein [Listeria monocytogenes FSL J2-071] gi|290557827|gb|EFD91348.1| cell wall surface anchor family protein [Listeria monocytogenes FSL J2-071]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 68/124 (54%), Gaps = 8/124 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L NL  LQ L LS N N+T+ +     + +L  LK L LDGCGIT+I  L  L  LE LD
Sbjct: 382 LNNLPKLQTLVLSDNENLTNIT----AITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLD 437

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQ 119
           L  N     S+  + +L  L  LD+S N NLTT+G L  LP L+ L++    +T +  + 
Sbjct: 438 LKENKIT--SISEITDLPRLSYLDVSVN-NLTTIGDLKKLPLLEWLNVSSNRLTDVSTLT 494

Query: 120 QFTS 123
            F S
Sbjct: 495 NFPS 498

Source: Listeria monocytogenes FSL J2-071

Species: Listeria monocytogenes

Genus: Listeria

Family: Listeriaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|404406789|ref|YP_006689504.1| internalin I [Listeria monocytogenes SLCC2376] gi|404240938|emb|CBY62338.1| internalin I (LPXTG motif) [Listeria monocytogenes SLCC2376]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 68/124 (54%), Gaps = 8/124 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L NL  LQ L LS N N+T+ +     + +L  LK L LDGCGIT+I  L  L  LE LD
Sbjct: 382 LNNLPKLQTLVLSDNENLTNIT----AITDLPQLKTLTLDGCGITSIGTLDNLPKLEKLD 437

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQ 119
           L  N     S+  + +L  L  LD+S N NLTT+G L  LP L+ L++    +T +  + 
Sbjct: 438 LKENKIT--SISEITDLPRLSYLDVSVN-NLTTIGDLKKLPLLEWLNVSSNRLTDVSTLT 494

Query: 120 QFTS 123
            F S
Sbjct: 495 NFPS 498

Source: Listeria monocytogenes SLCC2376

Species: Listeria monocytogenes

Genus: Listeria

Family: Listeriaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
ZFIN|ZDB-GENE-040426-2448	250	anp32e "acidic (leucine-rich)	0.951	0.472	0.368	6.6e-10
UNIPROTKB|Q723V1	589	LMOf2365_0374 "Internalin" [Li	0.967	0.203	0.357	6.1e-09
MGI|MGI:108447	247	Anp32a "acidic (leucine-rich)	0.75	0.376	0.393	1.2e-08
RGD|2116	247	Anp32a "acidic (leucine-rich)	0.75	0.376	0.393	1.2e-08
UNIPROTKB|Q5ZMN0	262	ANP32B "Acidic leucine-rich nu	0.822	0.389	0.387	1.4e-08
UNIPROTKB|Q723K6	800	inlA "Internalin-A" [Listeria	0.741	0.115	0.416	1.5e-08
UNIPROTKB|Q92688	251	ANP32B "Acidic leucine-rich nu	0.911	0.450	0.373	1.6e-08
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.846	0.112	0.388	1.9e-08
UNIPROTKB|Q15435	360	PPP1R7 "Protein phosphatase 1	0.927	0.319	0.377	2.5e-08
UNIPROTKB|Q3SZC6	261	ANP32B "Acidic leucine-rich nu	0.911	0.432	0.373	3.1e-08

ZFIN|ZDB-GENE-040426-2448 anp32e "acidic (leucine-rich) nuclear phosphoprotein 32 family, member E" [Danio rerio (taxid:7955)]

 Score = 144 (55.7 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 46/125 (36%), Positives = 68/125 (54%)

Query:     1 LANLRYLQVLDLSA-NYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
             L N    +V +L   N   + G +  L   +   L+ L +   G+T++  L  L  L  L
Sbjct:    11 LRNRTPAEVAELVVDNCRSSDGEIEGL-TDDFKELEFLSMVNVGLTSLAKLPSLPKLRKL 69

Query:    60 DLSSNYYLHGSLEGLAN-LTNLQVLDLSGNQ--NLTTL-GLANLPNLKTLDLRDCGITTI 115
             +LS N  + G+LE LA    NL  L+LSGN+   L+TL  L NL NLK+LDL +C ITT+
Sbjct:    70 ELSDNN-ISGTLETLAEKCANLTYLNLSGNKIKELSTLEALQNLKNLKSLDLFNCEITTL 128

Query:   116 QGIQQ 120
             +  ++
Sbjct:   129 EDYRE 133

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q723V1 LMOf2365_0374 "Internalin" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 143 (55.4 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 44/123 (35%), Positives = 64/123 (52%)

Query:     1 LANLRYLQVLDLSANYNITSGSLTRLG-LANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
             L NL  +  L    + N+++  LT L  L  L+NL  L  +   I  +QGL+ L NL  L
Sbjct:   171 LENLSGVNSLHQLRSLNVSNNKLTNLDELQALSNLSVLYANENQINNLQGLSNLNNLFLL 230

Query:    60 DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQ 119
             DLS+N  +  +   LA LT +Q L +S NQ     GL++L NL  LD+    I+ I+ + 
Sbjct:   231 DLSANQIVDTT--PLAGLTKVQTLYVSNNQISDVTGLSSLINLDWLDISQNKISNIRPLN 288

Query:   120 QFT 122
               T
Sbjct:   289 SLT 291

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=ISS

GO:0030260 "entry into host cell" evidence=ISS

MGI|MGI:108447 Anp32a "acidic (leucine-rich) nuclear phosphoprotein 32 family, member A" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 39/99 (39%), Positives = 58/99 (58%)

Query:    27 GLAN-LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLAN-LTNLQVLD 84
             GL +    L+ L     G+T+I  L KL  L+ L+LS N  + G LE LA    NL+ L+
Sbjct:    36 GLTDEFEELEFLSTINVGLTSISNLPKLNKLKKLELSENR-ISGDLEVLAEKCPNLKHLN 94

Query:    85 LSGNQ--NLTTLG-LANLPNLKTLDLRDCGITTIQGIQQ 120
             LSGN+  +L+T+  L  L NLK+LDL +C +T +   ++
Sbjct:    95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRE 133

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016363 "nuclear matrix" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050839 "cell adhesion molecule binding" evidence=ISO

RGD|2116 Anp32a "acidic (leucine-rich) nuclear phosphoprotein 32 family, member A" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 39/99 (39%), Positives = 58/99 (58%)

Query:    27 GLAN-LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLAN-LTNLQVLD 84
             GL +    L+ L     G+T+I  L KL  L+ L+LS N  + G LE LA    NL+ L+
Sbjct:    36 GLTDEFEELEFLSTINVGLTSISNLPKLNKLKKLELSENR-ISGDLEVLAEKCPNLKHLN 94

Query:    85 LSGNQ--NLTTLG-LANLPNLKTLDLRDCGITTIQGIQQ 120
             LSGN+  +L+T+  L  L NLK+LDL +C +T +   ++
Sbjct:    95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRE 133

GO:0005634 "nucleus" evidence=ISO;ISS;TAS

GO:0005737 "cytoplasm" evidence=ISO;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=ISO;ISS;TAS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0008092 "cytoskeletal protein binding" evidence=TAS

GO:0016363 "nuclear matrix" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

GO:0050839 "cell adhesion molecule binding" evidence=IPI

UNIPROTKB|Q5ZMN0 ANP32B "Acidic leucine-rich nuclear phosphoprotein 32 family member B" [Gallus gallus (taxid:9031)]

 Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 43/111 (38%), Positives = 60/111 (54%)

Query:     9 VLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLH 68
             VLD   N     G +  L  ++  NL+ L +    + +I  L KL  L  L+LS N  + 
Sbjct:    23 VLD---NCRSDDGKIVGLS-SDFENLEFLSMINVNLLSISNLPKLNKLRKLELSDNR-IS 77

Query:    69 GSLEGLANLT-NLQVLDLSGNQ--NLTTLG-LANLPNLKTLDLRDCGITTI 115
             G LE LA  T NL  L+LSGN+  ++ TL  L  LPNL +LDL +C +T +
Sbjct:    78 GGLEVLAERTPNLTHLNLSGNKIKDINTLEPLKKLPNLHSLDLFNCEVTML 128

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q723K6 inlA "Internalin-A" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 141 (54.7 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 40/96 (41%), Positives = 56/96 (58%)

Query:    28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
             LANLT L++LD+    ++ I  LAKL NLE+L  ++N      +  L  LTNL  L L+G
Sbjct:   203 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 260

Query:    88 NQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
             NQ L  +G LA+L NL  LDL +  I+ +  +   T
Sbjct:   261 NQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 295

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=ISS

GO:0030260 "entry into host cell" evidence=ISS

UNIPROTKB|Q92688 ANP32B "Acidic leucine-rich nuclear phosphoprotein 32 family member B" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 46/123 (37%), Positives = 67/123 (54%)

Query:     2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDL 61
             A +R L VLD   N     G +  L  A   NL+ L L   G+ ++  L KL  L+ L+L
Sbjct:    17 AAVREL-VLD---NCKSNDGKIEGL-TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLEL 71

Query:    62 SSNYYLHGSLEGLAN-LTNLQVLDLSGNQ--NLTTLG-LANLPNLKTLDLRDCGITTIQG 117
             S N  + G L+ LA  L NL  L+LSGN+  +++TL  L  L  LK+LDL +C +T +  
Sbjct:    72 SENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 130

Query:   118 IQQ 120
              ++
Sbjct:   131 YRE 133

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 42/108 (38%), Positives = 62/108 (57%)

Query:     1 LANLRYLQVLDLSANYNITSGSLTRLGLA-NLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
             L+ LR L+++DLS NY     +   L  A +LT L     +  G   I+GL  L NLE L
Sbjct:   120 LSGLRNLKIMDLSTNY-FNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLELL 178

Query:    60 DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
             DL +N  L+GS++ L +L  L+ LDLS N+  +++ L  L NL  L++
Sbjct:   179 DLRANK-LNGSMQELIHLKKLKALDLSSNKFSSSMELQELQNLINLEV 225

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q15435 PPP1R7 "Protein phosphatase 1 regulatory subunit 7" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 46/122 (37%), Positives = 59/122 (48%)

Query:     1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
             L+NL  LQ+L+L +N  I +       +  LTNL+ L L    IT +Q L  L NL  L 
Sbjct:   182 LSNLHQLQMLELGSN-RIRAIE----NIDTLTNLESLFLGKNKITKLQNLDALTNLTVLS 236

Query:    61 LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
             + SN      +EGL NL NL+ L LS N      GL N   L  LD+    I  I+ I  
Sbjct:   237 MQSNRLT--KIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISH 294

Query:   121 FT 122
              T
Sbjct:   295 LT 296

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=TAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

UNIPROTKB|Q3SZC6 ANP32B "Acidic leucine-rich nuclear phosphoprotein 32 family member B" [Bos taurus (taxid:9913)]

 Score = 130 (50.8 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 46/123 (37%), Positives = 67/123 (54%)

Query:     2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDL 61
             A +R L VLD   N     G +  L  A   NL+ L L   G+ ++  L KL  L+ L+L
Sbjct:    17 AAVREL-VLD---NCKSNDGKIEGL-TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLEL 71

Query:    62 SSNYYLHGSLEGLAN-LTNLQVLDLSGNQ--NLTTLG-LANLPNLKTLDLRDCGITTIQG 117
             S N  + G L+ LA  L NL  L+LSGN+  +++TL  L  L  LK+LDL +C +T +  
Sbjct:    72 SDNR-ICGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 130

Query:   118 IQQ 120
              ++
Sbjct:   131 YRE 133

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032748001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (883 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	124
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 33 NLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
          NLK LDL    +T I       L NL+ LDLS N     S E  + L +L+ LDLSGN 
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 26/115 (22%)

Query: 3   NLRYLQVLDLSANYN---ITSGSLTRLGLANLTNLKKLDLDGCGIT--TIQGLA--KLKN 55
           N   LQ ++L  + N   IT  SL+ LG  N T L+ +   GC +T   +  LA    K+
Sbjct: 102 NCPKLQTINLGRHRNGHLITDVSLSALG-KNCTFLQTVGFAGCDVTDKGVWELASGCSKS 160

Query: 56  LEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDC 110
           LE L          SL    NLT+  +  +        L     PNL  L+ R C
Sbjct: 161 LERL----------SLNNCRNLTDQSIPAI--------LASNYFPNLSVLEFRGC 197

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 7/125 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKN-LEAL 59
           L NL  L+ LDLS N       L    L+NL+NL  LDL G  I+ +    +L + LE L
Sbjct: 159 LRNLPNLKNLDLSFNDLSDLPKL----LSNLSNLNNLDLSGNKISDLPPEIELLSALEEL 214

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQ-NLTTLGLANLPNLKTLDLRDCGITTIQGI 118
           DLS+N  +   L  L+NL NL  L+LS N+       + NL NL+TLDL +  I++I  +
Sbjct: 215 DLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSL 273

Query: 119 QQFTS 123
              T+
Sbjct: 274 GSLTN 278

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.4 bits (80), Expect = 8e-04
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 32 TNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNY 65
          TNL+ LDL    IT +  L+ L NLE LDLS N 
Sbjct: 1  TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNK 34

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.4 bits (80), Expect = 0.001
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 78  TNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRDCGITTIQGIQ 119
           TNL+ LDLS NQ +T L  L+NLPNL+TLDL    IT +  + 
Sbjct: 1   TNLETLDLSNNQ-ITDLPPLSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.1 bits (79), Expect = 0.002
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 55  NLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCG 111
           NL++LDLS+N            L NL+VLDLSGN NLT++     + LP+L++LDL    
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 112 I 112
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 29/137 (21%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGITTIQG--------- 49
           L     LQ +DLS N    S     LG  +++ T+L  L L+  G+  I G         
Sbjct: 88  LLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH 146

Query: 50  LAKLKN------LEALDLSSNYYLHGSLEGLANL----TNLQVLDL-------SGNQNLT 92
           LA  K       LE +    N   +GS E  A L     NL+ + +        G   L 
Sbjct: 147 LAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLA 206

Query: 93  TLGLANLPNLKTLDLRD 109
            LGL    +L+ LDL+D
Sbjct: 207 FLGLFYSHSLEVLDLQD 223

Length = 388

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 37  LDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLE-GLANLTNLQVLDLSGNQ--NL 91
           L LD  G+       ++KL++L++++LS N  + G++   L ++T+L+VLDLS N     
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 92  TTLGLANLPNLKTLDLRD 109
               L  L +L+ L+L  
Sbjct: 482 IPESLGQLTSLRILNLNG 499

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.52
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.47
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.43
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.42
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.31
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.3
PLN03150	623	hypothetical protein; Provisional	99.17
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.12
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.11
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.1
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.03
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.99
PLN03150	623	hypothetical protein; Provisional	98.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.83
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.72
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.66
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.66
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.6
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.53
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.48
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.48
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.44
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.42
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.41
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.36
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.27
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.26
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	98.03
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.99
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.79
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.76
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.69
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.32
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.7
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.59
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.57
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.46
PRK15386	426	type III secretion protein GogB; Provisional	96.42
PRK15386	426	type III secretion protein GogB; Provisional	96.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.18
KOG4341	483	consensus F-box protein containing LRR [General fu	96.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.95
smart00370	26	LRR Leucine-rich repeats, outliers.	94.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.88
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.76
KOG4341	483	consensus F-box protein containing LRR [General fu	94.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.24
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	93.91
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.66
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.28
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.03
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.94
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.66
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	82.45
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.0

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.52  E-value=1.2e-14  Score=85.85  Aligned_cols=110  Identities=39%  Similarity=0.494  Sum_probs=45.8

Q ss_pred             CCCcCcEEeccccccccCCcccccccc-cccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcc-cCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLA-NLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L   80 (124)
                      ++.++++|++++|.  +. .+.  .+. .+.+++.|++++|.++....+..++.|++|++++|.+.... ..+ ..+++|
T Consensus        17 n~~~~~~L~L~~n~--I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQ--IS-TIE--NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNL   90 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred             cccccccccccccc--cc-ccc--chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence            34568899999998  66 344  344 57899999999999999988889999999999999998543 333 368899


Q ss_pred             CEEeccCCc--cC-ChhhhcCCCCCCEEeeeccCCCCcccc
Q 048165           81 QVLDLSGNQ--NL-TTLGLANLPNLKTLDLRDCGITTIQGI  118 (124)
Q Consensus        81 ~~l~l~~~~--~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~  118 (124)
                      ++|.+++|+  .+ ....+..+++|+.|++.+|+++..+.+
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y  131 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY  131 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH
Confidence            999999998  22 135677899999999999999876543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.47  E-value=2.2e-13  Score=98.52  Aligned_cols=109  Identities=30%  Similarity=0.392  Sum_probs=55.3

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      ..+++|+.|++++|.  +.+.+|...+..+++|+.|++++|.+++......+++|++|++++|.+.+..|..++.+++|+
T Consensus        90 ~~l~~L~~L~Ls~n~--~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  167 (968)
T PLN00113         90 FRLPYIQTINLSNNQ--LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK  167 (968)
T ss_pred             hCCCCCCEEECCCCc--cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence            456777777777776  555555444445666666666666655421122344455555555544444444444444455


Q ss_pred             EEeccCCc--cCChhhhcCCCCCCEEeeeccCC
Q 048165           82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGI  112 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~  112 (124)
                      +|++++|.  ...+..+..+++|++|++++|.+
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  200 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL  200 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence            55554443  11133344444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.43  E-value=5.3e-13  Score=96.63  Aligned_cols=81  Identities=32%  Similarity=0.404  Sum_probs=31.9

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      ++|++|++++|.  +.+.++ ..+..+++|+.|++++|.+..  +..+..+++|++|++++|.+.+..|..++.+.+|++
T Consensus       140 ~~L~~L~Ls~n~--~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        140 PNLETLDLSNNM--LSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             CCCCEEECcCCc--ccccCC-hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            344444444444  332333 233344444444444444332  123333444444444444433333333333333333


Q ss_pred             EeccCC
Q 048165           83 LDLSGN   88 (124)
Q Consensus        83 l~l~~~   88 (124)
                      +++.+|
T Consensus       217 L~L~~n  222 (968)
T PLN00113        217 IYLGYN  222 (968)
T ss_pred             EECcCC
Confidence            333333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.42  E-value=3e-15  Score=87.36  Aligned_cols=110  Identities=25%  Similarity=0.361  Sum_probs=80.2

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc---hhhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT---IQGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      +.+++|++|++..|+  .. ..| ..|+.++.++.||+++|++..   +..+..+..|+.++++.|.+. ..|..++.+.
T Consensus        76 ssl~klr~lnvgmnr--l~-~lp-rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt  150 (264)
T KOG0617|consen   76 SSLPKLRILNVGMNR--LN-ILP-RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT  150 (264)
T ss_pred             hhchhhhheecchhh--hh-cCc-cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc
Confidence            456667777777766  44 345 566777777777777777666   335556667777777777776 6677788888


Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +|+.+.+..|.  ++ |..++.+.+|+.+++.+|.++-+|+
T Consensus       151 ~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  151 NLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             ceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceeeecCh
Confidence            88888888887  55 7788888888889998888877663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.41  E-value=5.5e-15  Score=99.61  Aligned_cols=111  Identities=32%  Similarity=0.401  Sum_probs=89.0

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccch---hcccCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSL---EGLANL   77 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~   77 (124)
                      -+++|.+|++++|.  ++ .++++.+..+.+|++|+++.|.+...  ..+..+.+|++||++.|.+.+..-   ..+..+
T Consensus       315 ftqkL~~LdLs~N~--i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  315 FTQKLKELDLSSNR--IT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             hcccceeEeccccc--cc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence            36889999999998  77 55657888899999999999988885  367778889999999988764332   345578


Q ss_pred             CCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           78 TNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        78 ~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      ++|+.|.+.+|.  ++....+.++++|++|++.+|++.++.
T Consensus       392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             hhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence            889999998887  776677888899999999998887654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.31  E-value=3.3e-14  Score=83.07  Aligned_cols=81  Identities=27%  Similarity=0.349  Sum_probs=55.5

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +.+++.|-++.|.  ++ .++ ..+..+.+++.|++.+|+++. +..+..+++|+.++++.|++. ..|.+|+.++.|+.
T Consensus        32 ~s~ITrLtLSHNK--l~-~vp-pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNK--LT-VVP-PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhhcccCc--ee-ecC-CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            3455566667776  54 444 456677777777777777777 346777777777777777776 66777777777777


Q ss_pred             EeccCCc
Q 048165           83 LDLSGNQ   89 (124)
Q Consensus        83 l~l~~~~   89 (124)
                      +++..|.
T Consensus       107 ldltynn  113 (264)
T KOG0617|consen  107 LDLTYNN  113 (264)
T ss_pred             hhccccc
Confidence            7776554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.30  E-value=3.2e-13  Score=91.33  Aligned_cols=84  Identities=29%  Similarity=0.362  Sum_probs=36.3

Q ss_pred             cccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEE
Q 048165           30 NLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTL  105 (124)
Q Consensus        30 ~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l  105 (124)
                      ++.+++.|++..|++..+  .++.++..|+.|++++|.+....++.+..+++|+.|+++.|.  ++.+..+..+..|+.|
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            334444444444444332  133344444444444444444444444444444444444444  3333334444444444


Q ss_pred             eeeccCCC
Q 048165          106 DLRDCGIT  113 (124)
Q Consensus       106 ~l~~n~~~  113 (124)
                      .+++|.+.
T Consensus       347 nLs~Nsi~  354 (873)
T KOG4194|consen  347 NLSHNSID  354 (873)
T ss_pred             cccccchH
Confidence            44444433

>PLN03150 hypothetical protein; Provisional

Probab=99.17  E-value=2.1e-10  Score=80.00  Aligned_cols=102  Identities=27%  Similarity=0.413  Sum_probs=81.8

Q ss_pred             CcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165            7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD   84 (124)
Q Consensus         7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   84 (124)
                      ++.|+++.|.  +.+.++ ..+..+++|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..|..++.+++|+.|+
T Consensus       420 v~~L~L~~n~--L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQG--LRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEECCCCC--ccccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            6678888888  776777 567889999999999999876  34788899999999999999988888899999999999


Q ss_pred             ccCCc---cCChhhhcC-CCCCCEEeeeccCC
Q 048165           85 LSGNQ---NLTTLGLAN-LPNLKTLDLRDCGI  112 (124)
Q Consensus        85 l~~~~---~~~~~~~~~-~~~L~~l~l~~n~~  112 (124)
                      +++|.   .+ |..+.. ..++..+++.+|+.
T Consensus       497 Ls~N~l~g~i-P~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        497 LNGNSLSGRV-PAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcCCcccccC-ChHHhhccccCceEEecCCcc
Confidence            99887   44 555544 24567788887764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.16  E-value=7.4e-12  Score=81.58  Aligned_cols=108  Identities=31%  Similarity=0.392  Sum_probs=81.6

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhh-hccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG-LAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      +.+++++.|+++.|.  .. .+| ..++.+..|+.++++.|.+...|. +..+..++++-.++|++....++++..+..|
T Consensus       432 ~~l~kLt~L~L~NN~--Ln-~LP-~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNL--LN-DLP-EEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             Hhhhcceeeecccch--hh-hcc-hhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            346677777777776  55 556 456667777777777776666443 2233456666666677777777778889999


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      .++++++|.  .+ |+.++.|.+++++++.+|+|+-
T Consensus       508 ~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  508 TTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             ceeccCCCchhhC-ChhhccccceeEEEecCCccCC
Confidence            999999998  66 8899999999999999999983

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=5.5e-12  Score=79.72  Aligned_cols=106  Identities=33%  Similarity=0.384  Sum_probs=58.3

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEec
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL   85 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   85 (124)
                      .|+++++++|.  +. .+. ....-.+.++.|+++.|.+..+..+..+++|+.||+++|.+.. ....-..+.++++|.+
T Consensus       285 ~LtelDLS~N~--I~-~iD-ESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNL--IT-QID-ESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccc--hh-hhh-hhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence            45667777776  54 333 4555667777777777777776667777777777777776552 1111123344455555


Q ss_pred             cCCccCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           86 SGNQNLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      ++|..-+...+.++-+|..||+.+|.|....
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ld  390 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELD  390 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHH
Confidence            5554111233344444445555555444433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.13  E-value=7.7e-11  Score=58.22  Aligned_cols=56  Identities=45%  Similarity=0.604  Sum_probs=30.4

Q ss_pred             CccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCC
Q 048165           33 NLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN   88 (124)
Q Consensus        33 ~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   88 (124)
                      +|++|++++|+++..  ..+..+++|+++++++|.+....+..+..+++|+++++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            455556666655553  24445555555555555555444445555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.12  E-value=1.1e-10  Score=57.64  Aligned_cols=59  Identities=39%  Similarity=0.529  Sum_probs=52.1

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccc
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYY   66 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~   66 (124)
                      |+|+.|++++|.  +. .++...+.++++|+++++++|.++.+  ..+..+++|+++++++|.+
T Consensus         1 p~L~~L~l~~n~--l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNK--LT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSST--ES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCC--CC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999998  77 66767899999999999999999984  3688999999999999864

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.11  E-value=1.5e-12  Score=89.25  Aligned_cols=110  Identities=28%  Similarity=0.414  Sum_probs=68.2

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCcccc-ccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYL-HGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~   81 (124)
                      +++|+.|++++|.  ++ .+. .....+.++++|++++|+++.. ..+..+++|+.|.+.+|+++ +-+|.+++.+..|+
T Consensus       244 l~~LrrLNLS~N~--it-eL~-~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNK--IT-ELN-MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             hhhhheeccCcCc--ee-eee-ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence            4455555555555  44 222 1233455555666666665553 35556666666666666655 23456666666677


Q ss_pred             EEeccCCc-cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           82 VLDLSGNQ-NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        82 ~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      .+..++|. .+.|..+.+|+.|+.|.+++|.+..+|.
T Consensus       320 vf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPe  356 (1255)
T KOG0444|consen  320 VFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPE  356 (1255)
T ss_pred             HHHhhccccccCchhhhhhHHHHHhcccccceeechh
Confidence            77776666 4447788888888888888888887774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=1.1e-10  Score=69.18  Aligned_cols=93  Identities=41%  Similarity=0.619  Sum_probs=35.4

Q ss_pred             cccccCccEEeccCCCCcchhhhc-cCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhh-cCCCCCC
Q 048165           28 LANLTNLKKLDLDGCGITTIQGLA-KLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGL-ANLPNLK  103 (124)
Q Consensus        28 ~~~~~~l~~L~l~~~~l~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~-~~~~~L~  103 (124)
                      +.....++.|++++|.++.+..++ .+.+|+.|++++|.+...  +.+..++.|+.|++++|.  .+ ...+ ..+++|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence            445667899999999999987776 578999999999999843  567789999999999998  45 2334 4689999


Q ss_pred             EEeeeccCCCCccccccccc
Q 048165          104 TLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus       104 ~l~l~~n~~~~~~~~~~l~~  123 (124)
                      .|++++|.|.++..+..+..
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~  111 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSS  111 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG
T ss_pred             EEECcCCcCCChHHhHHHHc
Confidence            99999999998877766543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.11  E-value=1.8e-11  Score=79.48  Aligned_cols=103  Identities=24%  Similarity=0.244  Sum_probs=84.3

Q ss_pred             cccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhc
Q 048165           22 SLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLA   97 (124)
Q Consensus        22 ~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~   97 (124)
                      ..|+..|..+++|+.+++++|+++.+  .++.+...++.|.+..|++.......|..+..|++|++.+|.  .+.+..+.
T Consensus       264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence            45656788889999999999998885  467788888999999998876666677788889999998887  45577778


Q ss_pred             CCCCCCEEeeeccCCCCcccccccccC
Q 048165           98 NLPNLKTLDLRDCGITTIQGIQQFTSY  124 (124)
Q Consensus        98 ~~~~L~~l~l~~n~~~~~~~~~~l~~~  124 (124)
                      .+..|..+.+-+|++.+.+.+.|+.+|
T Consensus       344 ~~~~l~~l~l~~Np~~CnC~l~wl~~W  370 (498)
T KOG4237|consen  344 TLFSLSTLNLLSNPFNCNCRLAWLGEW  370 (498)
T ss_pred             ccceeeeeehccCcccCccchHHHHHH
Confidence            888899999999999999988888776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.10  E-value=2e-11  Score=86.06  Aligned_cols=106  Identities=39%  Similarity=0.447  Sum_probs=84.7

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      .++.+|++|++++|+  +. .+|+..+..+..|+.|++++|+++.. ..+..++.|++|...+|.+. ..| .+..++.|
T Consensus       380 ~~~~hLKVLhLsyNr--L~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNR--LN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             ccccceeeeeecccc--cc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence            468899999999998  76 67777888899999999999999985 46778888999999888887 667 67788899


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCC
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGI  112 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~  112 (124)
                      +.++++.|.  .+.......-++|++||+++|.-
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            999999886  22122222337899999999873

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.03  E-value=5.9e-12  Score=86.41  Aligned_cols=107  Identities=28%  Similarity=0.372  Sum_probs=68.7

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +.+|..++++.|.  ++ .+| +.+-.+++|+.|++++|+++.. .....+.+|++|+++.|+++ ..|..+..+++|+.
T Consensus       221 l~NL~dvDlS~N~--Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  221 LHNLRDVDLSENN--LP-IVP-ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK  295 (1255)
T ss_pred             hhhhhhccccccC--CC-cch-HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence            4455556666665  44 445 4455666666666666666664 34555666777777777766 66777777777777


Q ss_pred             EeccCCc----cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           83 LDLSGNQ----NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        83 l~l~~~~----~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      |.+.+|+    .+ |..++++.+|+.+..++|.+.-+|
T Consensus       296 Ly~n~NkL~FeGi-PSGIGKL~~Levf~aanN~LElVP  332 (1255)
T KOG0444|consen  296 LYANNNKLTFEGI-PSGIGKLIQLEVFHAANNKLELVP  332 (1255)
T ss_pred             HHhccCcccccCC-ccchhhhhhhHHHHhhccccccCc
Confidence            7776666    44 666677777777777777766554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.99  E-value=1e-11  Score=80.92  Aligned_cols=107  Identities=25%  Similarity=0.296  Sum_probs=84.8

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhccc-CCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLA-NLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~   82 (124)
                      +..|++++.-.|.  .. .+| ..++++.+++.||+.+|++...|.|.++..|.++.++.|.+. ..|.... +++++..
T Consensus       182 m~~L~~ld~~~N~--L~-tlP-~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  182 MKRLKHLDCNSNL--LE-TLP-PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV  256 (565)
T ss_pred             HHHHHhcccchhh--hh-cCC-hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence            3456666666665  54 566 577888888889999999888888888888888888888887 5565544 7888999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      ++++.|+  ++ |+.+..+.+|+.+|+++|.++..|
T Consensus       257 LDLRdNklke~-Pde~clLrsL~rLDlSNN~is~Lp  291 (565)
T KOG0472|consen  257 LDLRDNKLKEV-PDEICLLRSLERLDLSNNDISSLP  291 (565)
T ss_pred             eeccccccccC-chHHHHhhhhhhhcccCCccccCC
Confidence            9999988  56 778888888999999999998877

>PLN03150 hypothetical protein; Provisional

Probab=98.95  E-value=3.6e-09  Score=73.95  Aligned_cols=80  Identities=30%  Similarity=0.468  Sum_probs=72.2

Q ss_pred             ccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc---cCChhhhcCCCCCCEEeee
Q 048165           34 LKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLR  108 (124)
Q Consensus        34 l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~  108 (124)
                      ++.|++++|.+.+  +..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.   .+ |..+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECc
Confidence            7789999999987  4578899999999999999998999899999999999999997   44 7789999999999999


Q ss_pred             ccCCCC
Q 048165          109 DCGITT  114 (124)
Q Consensus       109 ~n~~~~  114 (124)
                      +|.++.
T Consensus       499 ~N~l~g  504 (623)
T PLN03150        499 GNSLSG  504 (623)
T ss_pred             CCcccc
Confidence            999873

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.93  E-value=1.9e-11  Score=79.31  Aligned_cols=114  Identities=24%  Similarity=0.256  Sum_probs=73.1

Q ss_pred             CcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEcc-CccccccchhcccCCCCCCEE
Q 048165            7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLS-SNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~-~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      .+++.+..|.  +. .+|+..|+.+++|+.+|++.|.|+.+  .++.+++.+.++.+- +|+|++.....|..+.+++.|
T Consensus        69 tveirLdqN~--I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   69 TVEIRLDQNQ--IS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             ceEEEeccCC--cc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            4567788887  66 67778888888888888888888873  477777776666444 477775444455555444444


Q ss_pred             ------------------------eccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165           84 ------------------------DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus        84 ------------------------~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~  123 (124)
                                              .+-+|.  .+....+..+.+++++++..|++.+++.+.|++.
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~  211 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD  211 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence                                    444443  2322234455566677777777777777666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=3.9e-10  Score=71.54  Aligned_cols=108  Identities=34%  Similarity=0.356  Sum_probs=87.5

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh-hhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .|.++.|++++|.  +. .+.  .+..+.+|+.||+++|.++... .-..+.+.++|.+++|.+.+  ..++..+-+|..
T Consensus       306 ~Pkir~L~lS~N~--i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvn  378 (490)
T KOG1259|consen  306 APKLRRLILSQNR--IR-TVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVN  378 (490)
T ss_pred             ccceeEEeccccc--ee-eeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhhee
Confidence            6889999999998  65 334  5788999999999999998854 33467889999999998862  366778889999


Q ss_pred             EeccCCc--c-CChhhhcCCCCCCEEeeeccCCCCcccc
Q 048165           83 LDLSGNQ--N-LTTLGLANLPNLKTLDLRDCGITTIQGI  118 (124)
Q Consensus        83 l~l~~~~--~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~  118 (124)
                      |++.+|.  . -....++.+|.|+++.+.+|++...+.+
T Consensus       379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             ccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            9999997  1 1134678899999999999999887654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.85  E-value=5.8e-09  Score=67.13  Aligned_cols=14  Identities=29%  Similarity=0.294  Sum_probs=6.6

Q ss_pred             cCccEEeccCCCCc
Q 048165           32 TNLKKLDLDGCGIT   45 (124)
Q Consensus        32 ~~l~~L~l~~~~l~   45 (124)
                      ++++.+++++|.++
T Consensus       137 ~~L~~L~L~~n~l~  150 (319)
T cd00116         137 PALEKLVLGRNRLE  150 (319)
T ss_pred             CCceEEEcCCCcCC
Confidence            44444444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.83  E-value=2.9e-09  Score=68.51  Aligned_cols=107  Identities=36%  Similarity=0.360  Sum_probs=57.1

Q ss_pred             CcCcEEeccccccccCCccc---ccccccccCccEEeccCCCCcc------hhhhccCCCCCEEEccCccccccch----
Q 048165            5 RYLQVLDLSANYNITSGSLT---RLGLANLTNLKKLDLDGCGITT------IQGLAKLKNLEALDLSSNYYLHGSL----   71 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~---~~~~~~~~~l~~L~l~~~~l~~------~~~~~~~~~L~~l~l~~~~~~~~~~----   71 (124)
                      ++|+++++++|.  +.+...   ...+..+++++.|++++|.++.      ...+...++|+.+++++|.+.+...    
T Consensus       137 ~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  214 (319)
T cd00116         137 PALEKLVLGRNR--LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA  214 (319)
T ss_pred             CCceEEEcCCCc--CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence            667777777776  431111   1234455667777777776663      1233445567777777776653322    


Q ss_pred             hcccCCCCCCEEeccCCccC--Chhhhc-----CCCCCCEEeeeccCCC
Q 048165           72 EGLANLTNLQVLDLSGNQNL--TTLGLA-----NLPNLKTLDLRDCGIT  113 (124)
Q Consensus        72 ~~~~~~~~L~~l~l~~~~~~--~~~~~~-----~~~~L~~l~l~~n~~~  113 (124)
                      ..+..+++|+++++++|...  ....+.     ..+.|+.+++++|.+.
T Consensus       215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            22335566777777666411  011111     1246666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.79  E-value=1.6e-10  Score=80.39  Aligned_cols=109  Identities=28%  Similarity=0.260  Sum_probs=81.5

Q ss_pred             CcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEecc
Q 048165            7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS   86 (124)
Q Consensus         7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   86 (124)
                      |...++++|.  +. .+. ..+.-++.++.|++++|+++.+..+..+++|++||+++|.+. ..|..-..-.+|+.|.++
T Consensus       166 L~~a~fsyN~--L~-~mD-~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNR--LV-LMD-ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             Hhhhhcchhh--HH-hHH-HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            4445677776  43 233 456678889999999999999888999999999999999887 555433323349999999


Q ss_pred             CCccCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165           87 GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ  120 (124)
Q Consensus        87 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  120 (124)
                      +|...+...+..+.+|+.||++.|-+.+...+.-
T Consensus       241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~p  274 (1096)
T KOG1859|consen  241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEP  274 (1096)
T ss_pred             ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhH
Confidence            9973335677888899999999998887765543

>PLN03210 Resistant to P

Probab=98.74  E-value=1.3e-07  Score=70.29  Aligned_cols=82  Identities=29%  Similarity=0.351  Sum_probs=47.8

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCC-CcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +.+|+.|++.++.  +. .++ .....+++|+.++++++. +...+.+..+++|++|++.+|......|..+..+.+|+.
T Consensus       610 ~~~L~~L~L~~s~--l~-~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        610 PENLVKLQMQGSK--LE-KLW-DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             ccCCcEEECcCcc--cc-ccc-cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            3456667776665  44 333 234556667777776553 444455556666666666666544455555566666666


Q ss_pred             EeccCCc
Q 048165           83 LDLSGNQ   89 (124)
Q Consensus        83 l~l~~~~   89 (124)
                      |++.+|.
T Consensus       686 L~L~~c~  692 (1153)
T PLN03210        686 LDMSRCE  692 (1153)
T ss_pred             EeCCCCC
Confidence            6666554

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.73  E-value=4.5e-10  Score=79.50  Aligned_cols=108  Identities=34%  Similarity=0.345  Sum_probs=83.3

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      ++.|+.|.+.+|.  +++... ..+.++++|+.|++++|.+..+  ..+.++..|+.|++++|.++ .+|..+..+..|+
T Consensus       358 ~~~Lq~LylanN~--Ltd~c~-p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  358 HAALQELYLANNH--LTDSCF-PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH  433 (1081)
T ss_pred             hHHHHHHHHhcCc--ccccch-hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence            3456667777887  665544 4677888899999999988874  35667888889999999888 6778888888888


Q ss_pred             EEeccCCc-cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           82 VLDLSGNQ-NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        82 ~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +|...+|. .. .+.+..++.|+.+|++.|.++.+.
T Consensus       434 tL~ahsN~l~~-fPe~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  434 TLRAHSNQLLS-FPELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             HHhhcCCceee-chhhhhcCcceEEecccchhhhhh
Confidence            88887777 33 337888899999999999887653

>PLN03210 Resistant to P

Probab=98.72  E-value=8.7e-08  Score=71.26  Aligned_cols=109  Identities=29%  Similarity=0.354  Sum_probs=65.6

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccc-hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITT-IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      .+++|+.++++++.  .-..+|  .+..+++|+.|++++|. +.. +..+..+++|+.|++++|......|... .+.+|
T Consensus       632 ~l~~Lk~L~Ls~~~--~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        632 SLTGLRNIDLRGSK--NLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             cCCCCCEEECCCCC--CcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            46677777777764  222444  35567777777777764 333 3466677777777777765443555433 56677


Q ss_pred             CEEeccCCccCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           81 QVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        81 ~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +.|++.+|..+ ........+|+.|++++|.+..+|.
T Consensus       707 ~~L~Lsgc~~L-~~~p~~~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        707 YRLNLSGCSRL-KSFPDISTNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             CEEeCCCCCCc-cccccccCCcCeeecCCCccccccc
Confidence            77777777522 0001123467777777777766553

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.66  E-value=9.4e-10  Score=74.58  Aligned_cols=108  Identities=31%  Similarity=0.363  Sum_probs=66.7

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hhhhccCCCCCEEEccCccccc-------------
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQGLAKLKNLEALDLSSNYYLH-------------   68 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~~~~~~~~L~~l~l~~~~~~~-------------   68 (124)
                      ++..++.++++.|+  +. ..| ..++.|+ |+.|-+++|+++. +..++..++|..+|.+.|.+..             
T Consensus       119 ~L~~lt~l~ls~Nq--lS-~lp-~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~  193 (722)
T KOG0532|consen  119 NLEALTFLDLSSNQ--LS-HLP-DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD  193 (722)
T ss_pred             hhhHHHHhhhccch--hh-cCC-hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence            34556666777766  44 334 3333333 6666666666665 3355555556666666655441             


Q ss_pred             ---------cchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           69 ---------GSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        69 ---------~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                               ..|..+. .-.|..|+++.|+  .+ |..+.++..|++|-|.+|++++-|+
T Consensus       194 l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  194 LNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             HHHhhhhhhhCCHHHh-CCceeeeecccCceeec-chhhhhhhhheeeeeccCCCCCChH
Confidence                     2333343 3357778888887  56 7788888888999999998887653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.66  E-value=6e-08  Score=58.24  Aligned_cols=87  Identities=24%  Similarity=0.249  Sum_probs=55.2

Q ss_pred             ccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--c-CChhhhcCCCCCCEEee
Q 048165           31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--N-LTTLGLANLPNLKTLDL  107 (124)
Q Consensus        31 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~-~~~~~~~~~~~L~~l~l  107 (124)
                      ..+...+|+++|.+.....+..++.|.+|.+.+|+++...|.--..++++..|.+.+|.  . -+...+..||+|+.|.+
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            34566677777777666666677777777777777775555444455667777777765  1 11334556677777777


Q ss_pred             eccCCCCccc
Q 048165          108 RDCGITTIQG  117 (124)
Q Consensus       108 ~~n~~~~~~~  117 (124)
                      -+|+++....
T Consensus       121 l~Npv~~k~~  130 (233)
T KOG1644|consen  121 LGNPVEHKKN  130 (233)
T ss_pred             cCCchhcccC
Confidence            7777665444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.60  E-value=1.3e-07  Score=43.46  Aligned_cols=40  Identities=50%  Similarity=0.704  Sum_probs=27.5

Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQ  119 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  119 (124)
                      +|++|++++|.  .+ +..+..+++|+.|++++|++++++++.
T Consensus         2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i~~l~   43 (44)
T PF12799_consen    2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDISPLS   43 (44)
T ss_dssp             T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBEGGGT
T ss_pred             cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCCcCCC
Confidence            56777777776  44 334777888888888888887776654

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.55  E-value=2.1e-07  Score=42.70  Aligned_cols=35  Identities=46%  Similarity=0.581  Sum_probs=19.3

Q ss_pred             CccEEeccCCCCcchhh-hccCCCCCEEEccCcccc
Q 048165           33 NLKKLDLDGCGITTIQG-LAKLKNLEALDLSSNYYL   67 (124)
Q Consensus        33 ~l~~L~l~~~~l~~~~~-~~~~~~L~~l~l~~~~~~   67 (124)
                      +|++|++++|+++.++. +..+++|+.+++++|.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            45566666666665443 556666666666666554

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.53  E-value=5.1e-07  Score=64.41  Aligned_cols=98  Identities=30%  Similarity=0.303  Sum_probs=52.8

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEec
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL   85 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   85 (124)
                      .++.|++++|.  +. .+|.. +  ..+|+.|++++|+++..+. ....+|+.|++++|.+. ..|..+.  .+|+.|++
T Consensus       200 ~L~~L~Ls~N~--Lt-sLP~~-l--~~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNE--LK-SLPEN-L--QGNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCC--CC-cCChh-h--ccCCCEEECCCCccccCCh-hhhccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            46666777766  54 34422 1  2467777777776665432 11235666666666665 3344332  35666666


Q ss_pred             cCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           86 SGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        86 ~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      ++|.  .+ |..+  +++|+.|++++|.++.++
T Consensus       270 s~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP  299 (754)
T PRK15370        270 FHNKISCL-PENL--PEELRYLSVYDNSIRTLP  299 (754)
T ss_pred             cCCccCcc-cccc--CCCCcEEECCCCccccCc
Confidence            6665  22 2222  235666666666666544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.51  E-value=3.3e-07  Score=65.42  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=23.9

Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      +|+.|++++|.  .+ |..+..++.|..+++++|+++..
T Consensus       423 ~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        423 GLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCch
Confidence            34555555555  44 55566777888888888888753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.48  E-value=3e-08  Score=67.54  Aligned_cols=80  Identities=33%  Similarity=0.361  Sum_probs=63.7

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .+++.+++.+.|.  +. .++ ..+.++.+++.|.+.+|++..+ ..+..++ |..||++.|++. .+|-.|..+..|++
T Consensus       165 ~~tl~~ld~s~ne--i~-slp-sql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  165 LPTLAHLDVSKNE--IQ-SLP-SQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQV  238 (722)
T ss_pred             chhHHHhhhhhhh--hh-hch-HHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhhee
Confidence            4566677778887  55 445 4567788888888888888884 4666444 899999999999 77888999999999


Q ss_pred             EeccCCc
Q 048165           83 LDLSGNQ   89 (124)
Q Consensus        83 l~l~~~~   89 (124)
                      |-|-+|.
T Consensus       239 l~LenNP  245 (722)
T KOG0532|consen  239 LQLENNP  245 (722)
T ss_pred             eeeccCC
Confidence            9999887

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.48  E-value=4.2e-08  Score=65.67  Aligned_cols=110  Identities=37%  Similarity=0.483  Sum_probs=65.8

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .+.++..+++..|.  +. .+. ..+..+.+|+.|++++|.|+....+..++.|+.|++.+|.+...  ..+..+..++.
T Consensus        93 ~~~~l~~l~l~~n~--i~-~i~-~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~  166 (414)
T KOG0531|consen   93 KLKSLEALDLYDNK--IE-KIE-NLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL  166 (414)
T ss_pred             cccceeeeeccccc--hh-hcc-cchhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence            45566666777766  54 233 12556777777777777777766666666677777777766522  33444666677


Q ss_pred             EeccCCccCChhh--hcCCCCCCEEeeeccCCCCcccc
Q 048165           83 LDLSGNQNLTTLG--LANLPNLKTLDLRDCGITTIQGI  118 (124)
Q Consensus        83 l~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~~  118 (124)
                      +++++|.......  ...+.+++.+.+++|.+..+..+
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~  204 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGL  204 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccCCchhcccch
Confidence            7777665111112  35566666667777666655443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=3.2e-08  Score=65.38  Aligned_cols=117  Identities=26%  Similarity=0.375  Sum_probs=67.0

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hh-------------------------hhccCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQ-------------------------GLAKLKN   55 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~-------------------------~~~~~~~   55 (124)
                      .+|+|+.|+++.|.  +.-......-..+++++.|.++.|.++.  +.                         ....+..
T Consensus       170 qLp~Le~LNls~Nr--l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  170 QLPSLENLNLSSNR--LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             hcccchhccccccc--ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence            46777777777776  3211110111135556666666665554  11                         1122445


Q ss_pred             CCEEEccCccccccc-hhcccCCCCCCEEeccCCc--cCC-hhh-----hcCCCCCCEEeeeccCCCCccccccc
Q 048165           56 LEALDLSSNYYLHGS-LEGLANLTNLQVLDLSGNQ--NLT-TLG-----LANLPNLKTLDLRDCGITTIQGIQQF  121 (124)
Q Consensus        56 L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~--~~~-~~~-----~~~~~~L~~l~l~~n~~~~~~~~~~l  121 (124)
                      |++|++++|.+-+.. ....+.++.|+.++++.++  ++. ++.     ...+++|+.|++..|++++++++.++
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l  322 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL  322 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence            666666666654221 1335567778888887776  221 111     23567899999999999888876654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.46  E-value=1e-07  Score=63.39  Aligned_cols=109  Identities=41%  Similarity=0.481  Sum_probs=57.0

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhc-cCCCCCEEEccCccccccchhc-----------
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA-KLKNLEALDLSSNYYLHGSLEG-----------   73 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~-----------   73 (124)
                      +++.|++++|.  +. .++ .....++.|+.|+++.|++...+... ..+.|+.+++++|.+. ..|..           
T Consensus       141 nL~~L~l~~N~--i~-~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~  215 (394)
T COG4886         141 NLKELDLSDNK--IE-SLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELD  215 (394)
T ss_pred             hcccccccccc--hh-hhh-hhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhh
Confidence            56666666665  43 332 23455666666666666666644333 5555666666666555 22222           


Q ss_pred             ------------ccCCCCCCEEeccCCccCC-hhhhcCCCCCCEEeeeccCCCCccccc
Q 048165           74 ------------LANLTNLQVLDLSGNQNLT-TLGLANLPNLKTLDLRDCGITTIQGIQ  119 (124)
Q Consensus        74 ------------~~~~~~L~~l~l~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~  119 (124)
                                  +....++..+.+..++... +..+..++.++.+++++|.+++++.+.
T Consensus       216 ~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~  274 (394)
T COG4886         216 LSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLG  274 (394)
T ss_pred             hcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccccc
Confidence                        2222333333333333111 344555666777777777777766533

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.44  E-value=4.3e-07  Score=64.77  Aligned_cols=99  Identities=33%  Similarity=0.367  Sum_probs=53.7

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhh-hc-------------------cCCCCCEEEccCcc
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG-LA-------------------KLKNLEALDLSSNY   65 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~-------------------~~~~L~~l~l~~~~   65 (124)
                      +|+.|++++|.  +. .+| ..+  .++|+.|++++|+++..+. +.                   ..++|++|++++|.
T Consensus       263 ~L~~L~Ls~N~--L~-~LP-~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~  336 (754)
T PRK15370        263 ALQSLDLFHNK--IS-CLP-ENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA  336 (754)
T ss_pred             CCCEEECcCCc--cC-ccc-ccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence            56777777776  54 344 222  2467777777776665221 10                   12345666666665


Q ss_pred             ccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           66 YLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        66 ~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +. ..|..+.  ++|+.|++++|.  .+ |..+  .++|+.|++++|.++.+|
T Consensus       337 Lt-~LP~~l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP  383 (754)
T PRK15370        337 LT-SLPASLP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLP  383 (754)
T ss_pred             cc-cCChhhc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCC
Confidence            55 2333322  467777777665  23 2222  246677777777666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.44  E-value=1.1e-06  Score=62.90  Aligned_cols=17  Identities=18%  Similarity=0.397  Sum_probs=9.4

Q ss_pred             CCCEEeeeccCCCCccc
Q 048165          101 NLKTLDLRDCGITTIQG  117 (124)
Q Consensus       101 ~L~~l~l~~n~~~~~~~  117 (124)
                      +|+.|++++|.++.+|.
T Consensus       343 ~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        343 GLQELSVSDNQLASLPT  359 (788)
T ss_pred             ccceEecCCCccCCCCC
Confidence            45555555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.42  E-value=1.9e-07  Score=65.96  Aligned_cols=108  Identities=31%  Similarity=0.430  Sum_probs=77.3

Q ss_pred             CCCcCcEEeccccccccCC-cccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccc-cchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSG-SLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLH-GSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L   80 (124)
                      .||.|+.|.+.+-.  +.. .+. ....++++|..||+++++++...+++.+++|+.|.+.+-.+.. .....+..+.+|
T Consensus       146 ~LPsL~sL~i~~~~--~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQ--FDNDDFS-QLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL  222 (699)
T ss_pred             hCcccceEEecCce--ecchhHH-HHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence            47888888888866  321 222 3456789999999999999988888889999998888766652 233456788999


Q ss_pred             CEEeccCCccCC-h----h---hhcCCCCCCEEeeeccCCC
Q 048165           81 QVLDLSGNQNLT-T----L---GLANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        81 ~~l~l~~~~~~~-~----~---~~~~~~~L~~l~l~~n~~~  113 (124)
                      +.||++..+... +    .   -...+|.|+.||.+++.+.
T Consensus       223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            999998776110 1    1   1124788999998887664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.42  E-value=8.2e-08  Score=61.79  Aligned_cols=111  Identities=24%  Similarity=0.310  Sum_probs=74.1

Q ss_pred             CCCCcCcEEeccccccccCCc-ccccccccccCccEEeccCCCCcc------hhhhccCCCCCEEEccCccccccchhcc
Q 048165            2 ANLRYLQVLDLSANYNITSGS-LTRLGLANLTNLKKLDLDGCGITT------IQGLAKLKNLEALDLSSNYYLHGSLEGL   74 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~l~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~   74 (124)
                      ..++.+..+.+.+|.+...+. .-+..+..|++|+.||+++|.++.      ...++.+++|+.+++++|.+.......+
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            345677788888887333322 122456778888888888887766      1256677788888888888775544433


Q ss_pred             c-----CCCCCCEEeccCCc-------cCChhhhcCCCCCCEEeeeccCCC
Q 048165           75 A-----NLTNLQVLDLSGNQ-------NLTTLGLANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        75 ~-----~~~~L~~l~l~~~~-------~~~~~~~~~~~~L~~l~l~~n~~~  113 (124)
                      .     ..++|+.+.+.+|.       .+ ...+...+.|..|++++|.+.
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~l-a~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALAL-AACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHH-HHHHhcchhhHHhcCCccccc
Confidence            3     46788888888886       11 223345677888888888873

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.4e-08  Score=65.95  Aligned_cols=112  Identities=22%  Similarity=0.237  Sum_probs=57.6

Q ss_pred             CCCcCcEEeccccccccCCccc-ccccccccCccEEeccCCCCcchh---hhccCCCCCEEEccCccccccchhcc-cCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLT-RLGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLEALDLSSNYYLHGSLEGL-ANL   77 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~   77 (124)
                      .|++++.|+++.|-  +....+ ......+++|+.|+++.|++..+.   .-..+++++.|.+++|.+++...... ..+
T Consensus       144 ~~~~v~~LdLS~NL--~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNL--FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hCCcceeecchhhh--HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            36666667776665  331111 123345677777777777665531   12235566666666666654433322 245


Q ss_pred             CCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           78 TNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        78 ~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      |+++.|.+..|.  .+....-.-++.|+.|++++|++.+++
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~  262 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD  262 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence            566666665553  110111122345666666666665554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.36  E-value=4e-08  Score=65.79  Aligned_cols=83  Identities=47%  Similarity=0.592  Sum_probs=66.5

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      ..+++|+++++++|.  +.. +.  .+..++.|+.|++.+|.++....+..+..|+.+++++|.+....+.....+.+++
T Consensus       115 ~~~~~L~~L~ls~N~--I~~-i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~  189 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNK--ITK-LE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLE  189 (414)
T ss_pred             hhhhcchheeccccc--ccc-cc--chhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchH
Confidence            458899999999998  763 33  4567788999999999999988888899999999999998854331035667788


Q ss_pred             EEeccCCc
Q 048165           82 VLDLSGNQ   89 (124)
Q Consensus        82 ~l~l~~~~   89 (124)
                      .+.+..|.
T Consensus       190 ~l~l~~n~  197 (414)
T KOG0531|consen  190 ELDLGGNS  197 (414)
T ss_pred             HHhccCCc
Confidence            88888776

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.32  E-value=3.2e-07  Score=66.40  Aligned_cols=106  Identities=26%  Similarity=0.271  Sum_probs=71.6

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccc-hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITT-IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      .++.++.|-+.+|...+. .+....|..++.|++||+++|. +.. |..++.+.+|++|++++..+. ..|..+..+.+|
T Consensus       543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            355677777777641011 2232346778888888888763 333 457778888888888888877 778888888888


Q ss_pred             CEEeccCCc---cCChhhhcCCCCCCEEeeeccC
Q 048165           81 QVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCG  111 (124)
Q Consensus        81 ~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~  111 (124)
                      .+|++..+.   .+ +.....+.+|++|.+....
T Consensus       621 ~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heeccccccccccc-cchhhhcccccEEEeeccc
Confidence            888887766   33 4455567788888776554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=8.7e-09  Score=72.03  Aligned_cols=106  Identities=31%  Similarity=0.329  Sum_probs=81.5

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCC-CCCEEEccCccccccchhcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLK-NLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      ++.+++|+++.|.  +. .+.  .+..|+.|+.||+++|.+..++.+..-. +|+.|.+++|.++.  ..++.++.+|+.
T Consensus       186 l~ale~LnLshNk--~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t--L~gie~LksL~~  258 (1096)
T KOG1859|consen  186 LPALESLNLSHNK--FT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT--LRGIENLKSLYG  258 (1096)
T ss_pred             HHHhhhhccchhh--hh-hhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHh--hhhHHhhhhhhc
Confidence            5678899999998  66 333  5778999999999999999977655432 59999999998873  356668889999


Q ss_pred             EeccCCc---cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           83 LDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        83 l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      |+++.|-   .-....++.+..|..|.+.+|++.+-|
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9999886   111334556678889999999987654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.27  E-value=5e-07  Score=60.08  Aligned_cols=99  Identities=39%  Similarity=0.475  Sum_probs=48.5

Q ss_pred             cCcEEeccccccccCCccccccccccc-CccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLT-NLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      .++.+.+..+.  +. .++ ....... +++.|++++|.+... ..+..++.|+.|++++|++. ..+...+..+.++.+
T Consensus       117 ~l~~L~l~~n~--i~-~i~-~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         117 NLTSLDLDNNN--IT-DIP-PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ceeEEecCCcc--cc-cCc-cccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            34455555554  43 333 2222332 566666666665554 35555666666666666555 323333344555555


Q ss_pred             eccCCc--cCChhhhcCCCCCCEEeeecc
Q 048165           84 DLSGNQ--NLTTLGLANLPNLKTLDLRDC  110 (124)
Q Consensus        84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n  110 (124)
                      .+++|.  .+ +........|+.+.+++|
T Consensus       192 ~ls~N~i~~l-~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         192 DLSGNKISDL-PPEIELLSALEELDLSNN  219 (394)
T ss_pred             eccCCccccC-chhhhhhhhhhhhhhcCC
Confidence            555555  23 322233344555555555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.26  E-value=2.2e-06  Score=51.74  Aligned_cols=98  Identities=35%  Similarity=0.421  Sum_probs=72.2

Q ss_pred             CcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhcc-CCCCCEEEccCcccccc-chhcccCCCCCCEE
Q 048165            7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAK-LKNLEALDLSSNYYLHG-SLEGLANLTNLQVL   83 (124)
Q Consensus         7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~-~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l   83 (124)
                      ...++++.|.  +. ..  +.+..++.|.+|.+++|.|+.+ +.+.. +++|..|.+.+|.+... ....+..|++|++|
T Consensus        44 ~d~iDLtdNd--l~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   44 FDAIDLTDND--LR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cceecccccc--hh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            3456777777  43 22  4678899999999999999995 45544 57899999999988732 23567789999999


Q ss_pred             eccCCccCC-----hhhhcCCCCCCEEeeec
Q 048165           84 DLSGNQNLT-----TLGLANLPNLKTLDLRD  109 (124)
Q Consensus        84 ~l~~~~~~~-----~~~~~~~~~L~~l~l~~  109 (124)
                      .+-+|..-.     .-.+..+|+|+.||+..
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            998886111     11456789999999765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.22  E-value=1.3e-06  Score=63.46  Aligned_cols=84  Identities=36%  Similarity=0.446  Sum_probs=52.8

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      ..++.|++|++++|.  ..+.+| ..++.+-+|++|++++..++. |..+..+..|.+|++..+......+.....+++|
T Consensus       568 ~~m~~LrVLDLs~~~--~l~~LP-~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNS--SLSKLP-SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             hhCcceEEEECCCCC--ccCcCC-hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence            346677777777765  333556 556667777777777777766 3466667777777776655443433444456677


Q ss_pred             CEEeccCC
Q 048165           81 QVLDLSGN   88 (124)
Q Consensus        81 ~~l~l~~~   88 (124)
                      +++.+...
T Consensus       645 r~L~l~~s  652 (889)
T KOG4658|consen  645 RVLRLPRS  652 (889)
T ss_pred             cEEEeecc
Confidence            77766544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=1.3e-07  Score=53.74  Aligned_cols=86  Identities=26%  Similarity=0.290  Sum_probs=57.5

Q ss_pred             cccCccEEeccCCCCcch-hhhc-cCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc-cCChhhhcCCCCCCEEe
Q 048165           30 NLTNLKKLDLDGCGITTI-QGLA-KLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ-NLTTLGLANLPNLKTLD  106 (124)
Q Consensus        30 ~~~~l~~L~l~~~~l~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~L~~l~  106 (124)
                      ....++..++++|.+..+ +.+. .++..+++++++|.+. ..|..+..++.|+.++++.|. ...+..+..+.++..|+
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            345566678888877764 3333 3457788888888887 446667788888888888877 22255555566777777


Q ss_pred             eeccCCCCcc
Q 048165          107 LRDCGITTIQ  116 (124)
Q Consensus       107 l~~n~~~~~~  116 (124)
                      ..+|.+..++
T Consensus       130 s~~na~~eid  139 (177)
T KOG4579|consen  130 SPENARAEID  139 (177)
T ss_pred             CCCCccccCc
Confidence            7776665544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=9.5e-08  Score=60.24  Aligned_cols=98  Identities=28%  Similarity=0.248  Sum_probs=73.4

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccch-hcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSL-EGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~   82 (124)
                      +.+.+.|+..+|.  ++ .+.  ....++.++.|.|+-|+|+....+..|.+|+++++..|.+.+..- .-+..+++|+.
T Consensus        18 l~~vkKLNcwg~~--L~-DIs--ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCG--LD-DIS--ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCC--cc-HHH--HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            3456678888888  65 322  456789999999999999998888899999999999998874322 33558899999


Q ss_pred             EeccCCc---cC----ChhhhcCCCCCCEEe
Q 048165           83 LDLSGNQ---NL----TTLGLANLPNLKTLD  106 (124)
Q Consensus        83 l~l~~~~---~~----~~~~~~~~~~L~~l~  106 (124)
                      |++..|.   .-    ....+..+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9998776   11    112456778888776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.99  E-value=4.5e-06  Score=59.27  Aligned_cols=109  Identities=27%  Similarity=0.295  Sum_probs=78.6

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--h-hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--I-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .+|++|+++|...... .++...-..+|+|++|.+.+-.+..  . .-...+|+|..||++++.+...  .+.+.+.+|+
T Consensus       122 ~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            3688899999764433 3443344568999999999877655  2 3455789999999999988733  6777888899


Q ss_pred             EEeccCCcc---CChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           82 VLDLSGNQN---LTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        82 ~l~l~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      .|.+.+=..   -....+..+.+|++||++..+....+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~  236 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT  236 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccch
Confidence            887765441   11346778899999999987655443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.98  E-value=3.2e-07  Score=52.22  Aligned_cols=106  Identities=20%  Similarity=0.167  Sum_probs=73.8

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      ..|+..++++|.  +. .+|...-..++..+++++++|.++.+ ..+..++.|+.++++.|.+. ..|+.+..+.++..|
T Consensus        53 ~el~~i~ls~N~--fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNG--FK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             ceEEEEecccch--hh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            456667888888  65 44533333466789999999999995 47889999999999999988 667777778888888


Q ss_pred             eccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      +..++.  .++.+ +-.-......+++.+++.+-
T Consensus       129 ds~~na~~eid~d-l~~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  129 DSPENARAEIDVD-LFYSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             cCCCCccccCcHH-HhccccHHHHHhcCCccccc
Confidence            888886  45222 32222333334455555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.79  E-value=1.5e-05  Score=51.69  Aligned_cols=112  Identities=22%  Similarity=0.272  Sum_probs=70.6

Q ss_pred             CCcCcEEeccccccccCCccc-ccccccccCccEEeccCCCCcc--h----hhhccCCCCCEEEccCccccccch----h
Q 048165            4 LRYLQVLDLSANYNITSGSLT-RLGLANLTNLKKLDLDGCGITT--I----QGLAKLKNLEALDLSSNYYLHGSL----E   72 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~--~----~~~~~~~~L~~l~l~~~~~~~~~~----~   72 (124)
                      =++|+++..+.|+..-.+... +..+..++.++.+.++.|.|..  .    ..+..+++|+.||++.|-++....    .
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            356777887777722111111 1345667788888888777655  1    356678888888888887763322    3


Q ss_pred             cccCCCCCCEEeccCCc-------cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           73 GLANLTNLQVLDLSGNQ-------NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        73 ~~~~~~~L~~l~l~~~~-------~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      .+..++.|+.+++++|.       .+....-...|.|+.+.+.+|.++..
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d  285 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD  285 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence            45567778888888775       12111223467888888888877643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.76  E-value=1.9e-05  Score=49.29  Aligned_cols=86  Identities=37%  Similarity=0.496  Sum_probs=49.7

Q ss_pred             ccccCccEEeccCCCCcchhhhccCCCCCEEEccCc--cccccchhcccCCCCCCEEeccCCc-cC--ChhhhcCCCCCC
Q 048165           29 ANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSN--YYLHGSLEGLANLTNLQVLDLSGNQ-NL--TTLGLANLPNLK  103 (124)
Q Consensus        29 ~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~-~~--~~~~~~~~~~L~  103 (124)
                      ..+..++.+.+.+..++....+..+++|++|.++.|  .+....+-..-.+++|+++++++|+ .+  +...+..+.+|.
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            345556666666666666666666777777777777  3332222222245777777777776 21  012233445666


Q ss_pred             EEeeeccCCCC
Q 048165          104 TLDLRDCGITT  114 (124)
Q Consensus       104 ~l~l~~n~~~~  114 (124)
                      .|++..|....
T Consensus       120 ~Ldl~n~~~~~  130 (260)
T KOG2739|consen  120 SLDLFNCSVTN  130 (260)
T ss_pred             hhhcccCCccc
Confidence            77776666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=3.8e-06  Score=53.73  Aligned_cols=42  Identities=26%  Similarity=0.243  Sum_probs=22.5

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT   46 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~   46 (124)
                      -.+|+.+++++|.- ++..-....+.+|+.|..|++++|.+..
T Consensus       233 N~~L~~lnlsm~sG-~t~n~~~ll~~scs~L~~LNlsWc~l~~  274 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSG-FTENALQLLLSSCSRLDELNLSWCFLFT  274 (419)
T ss_pred             cccceeeccccccc-cchhHHHHHHHhhhhHhhcCchHhhccc
Confidence            44566667766641 1111111234567777777777776544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.60  E-value=0.00038  Score=39.02  Aligned_cols=102  Identities=21%  Similarity=0.354  Sum_probs=59.5

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.++.+++.+.+...   +. .++...+..+.+++.+.+..+ +...  ..+..+.+++.+.+.+ .+.......+..+.
T Consensus         8 F~~~~~l~~i~~~~~---~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPNT---IK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETST------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECCC---ee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            567888998888753   33 455577888989999999875 5553  3577777899999976 33323345666788


Q ss_pred             CCCEEeccCCc-cCChhhhcCCCCCCEEeeec
Q 048165           79 NLQVLDLSGNQ-NLTTLGLANLPNLKTLDLRD  109 (124)
Q Consensus        79 ~L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~  109 (124)
                      +++.+.+..+- .+....+..+ .++.+.+..
T Consensus        82 ~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSNITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT-BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCccccEEchhhhcCC-CceEEEECC
Confidence            99999986553 4545556666 888887764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=5e-05  Score=48.81  Aligned_cols=82  Identities=34%  Similarity=0.498  Sum_probs=50.0

Q ss_pred             cccCccEEeccCCCCcchh----hhccCCCCCEEEccCccccccchhcc-cCCCCCCEEeccCCc-cC--ChhhhcCCCC
Q 048165           30 NLTNLKKLDLDGCGITTIQ----GLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQ-NL--TTLGLANLPN  101 (124)
Q Consensus        30 ~~~~l~~L~l~~~~l~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~-~~--~~~~~~~~~~  101 (124)
                      .+..++.+|+.+|.++..+    .+.++|.+++|+++.|.+... ...+ ....+|+.+-+.+.. .+  ....+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            4566777888888877743    344678888888888777632 2222 244567777776665 11  1223455666


Q ss_pred             CCEEeeeccCC
Q 048165          102 LKTLDLRDCGI  112 (124)
Q Consensus       102 L~~l~l~~n~~  112 (124)
                      ++.++++-|.+
T Consensus       148 vtelHmS~N~~  158 (418)
T KOG2982|consen  148 VTELHMSDNSL  158 (418)
T ss_pred             hhhhhhccchh
Confidence            66666666633

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.00025  Score=45.73  Aligned_cols=60  Identities=28%  Similarity=0.300  Sum_probs=26.7

Q ss_pred             CcCcEEeccccccccCCc--ccccccccccCccEEeccCCCCcch-hhh-ccCCCCCEEEccCcccc
Q 048165            5 RYLQVLDLSANYNITSGS--LTRLGLANLTNLKKLDLDGCGITTI-QGL-AKLKNLEALDLSSNYYL   67 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~--~~~~~~~~~~~l~~L~l~~~~l~~~-~~~-~~~~~L~~l~l~~~~~~   67 (124)
                      ..++++++.+|.  +...  +. ..+..++.+++|+++.|.+..+ ... ....+|+.+.+.+..+.
T Consensus        71 ~~v~elDL~~N~--iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   71 TDVKELDLTGNL--ISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             hhhhhhhcccch--hccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            344555555555  3311  22 2334555555555555555442 111 13334555555444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.32  E-value=0.0015  Score=36.62  Aligned_cols=95  Identities=19%  Similarity=0.352  Sum_probs=51.3

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.++..++.+.+..+   +. .++...+..++.++.+.+.. .+...  ..+..+.+++.+++..+ +.......+..+ 
T Consensus        31 F~~~~~l~~i~~~~~---~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-  103 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN---LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-  103 (129)
T ss_dssp             TTT-TT-SEEEESST---TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--
T ss_pred             ccccccccccccccc---cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-
Confidence            467778999988775   33 44546788888899999976 44432  35667889999999765 443444566676 


Q ss_pred             CCCEEeccCCc-cCChhhhcCCCCC
Q 048165           79 NLQVLDLSGNQ-NLTTLGLANLPNL  102 (124)
Q Consensus        79 ~L~~l~l~~~~-~~~~~~~~~~~~L  102 (124)
                      .++.+.+..+- .+....+..|++|
T Consensus       104 ~l~~i~~~~~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  104 NLKEINIPSNITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--EEE-TTB-SS----GGG-----
T ss_pred             CceEEEECCCccEECCccccccccC
Confidence            89999887643 5656666777655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=2.2e-05  Score=49.95  Aligned_cols=82  Identities=39%  Similarity=0.413  Sum_probs=67.8

Q ss_pred             ccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCC-hhhhcCCCCCCEEee
Q 048165           31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLT-TLGLANLPNLKTLDL  107 (124)
Q Consensus        31 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l  107 (124)
                      +.+.+.|++-+|.+++++....|+.|+.|.++-|.+..  ...+..|.+|+.+.+..|.  .+. ...+..+|+|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            56678889999999999988899999999999999973  3567899999999999886  221 335667899999999


Q ss_pred             eccCCCC
Q 048165          108 RDCGITT  114 (124)
Q Consensus       108 ~~n~~~~  114 (124)
                      ..|+...
T Consensus        96 ~ENPCc~  102 (388)
T KOG2123|consen   96 DENPCCG  102 (388)
T ss_pred             ccCCccc
Confidence            9998654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.81  E-value=0.00093  Score=45.46  Aligned_cols=108  Identities=38%  Similarity=0.439  Sum_probs=54.5

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCC-C-Ccc-----hhhhccCCCCCEEEccCcc-ccccchhccc
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC-G-ITT-----IQGLAKLKNLEALDLSSNY-YLHGSLEGLA   75 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~-l~~-----~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~   75 (124)
                      ++.++.+.+..+.......+. .....++.|+.|+++++ . +..     ......+..|+.++++++. +++.....+.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            455666666665422211111 23445667777777652 1 111     1122234566677776665 5544444444


Q ss_pred             -CCCCCCEEeccCCccCChhh----hcCCCCCCEEeeeccCC
Q 048165           76 -NLTNLQVLDLSGNQNLTTLG----LANLPNLKTLDLRDCGI  112 (124)
Q Consensus        76 -~~~~L~~l~l~~~~~~~~~~----~~~~~~L~~l~l~~n~~  112 (124)
                       .|++|+.+.+..|..++...    ...++.|++++++.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             36667777665554222222    23556677777766543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.73  E-value=0.0028  Score=40.62  Aligned_cols=109  Identities=26%  Similarity=0.264  Sum_probs=69.1

Q ss_pred             CCCCcCcEEeccccccccCCcccc---cccccccCccEEeccCCCCcchh---------------hhccCCCCCEEEccC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTR---LGLANLTNLKKLDLDGCGITTIQ---------------GLAKLKNLEALDLSS   63 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~---~~~~~~~~l~~L~l~~~~l~~~~---------------~~~~~~~L~~l~l~~   63 (124)
                      .+||+|+.++++.|.  +....++   +.+.....+..|.+++|.+....               ....-|.|+.+.+..
T Consensus        89 lkcp~l~~v~LSDNA--fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          89 LKCPRLQKVDLSDNA--FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             hcCCcceeeeccccc--cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            478999999999998  5433331   23456677888899888765421               122457788888888


Q ss_pred             ccccccchhc-----ccCCCCCCEEeccCCccCChh--------hhcCCCCCCEEeeeccCCCC
Q 048165           64 NYYLHGSLEG-----LANLTNLQVLDLSGNQNLTTL--------GLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        64 ~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~--------~~~~~~~L~~l~l~~n~~~~  114 (124)
                      |++. ..+..     +.....|..+.+..|. |.|.        .+.++.+|+.||+..|-++.
T Consensus       167 NRle-ngs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         167 NRLE-NGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             chhc-cCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            8775 22321     2223466777776664 1122        34467788888888877653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.00012  Score=47.16  Aligned_cols=81  Identities=28%  Similarity=0.280  Sum_probs=63.6

Q ss_pred             CccEEeccCCCCcch---hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCC----hhhhcCCCCCCEE
Q 048165           33 NLKKLDLDGCGITTI---QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLT----TLGLANLPNLKTL  105 (124)
Q Consensus        33 ~l~~L~l~~~~l~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~~L~~l  105 (124)
                      .++.+|+++..++..   .-+.++.+|+.+.+.++++.+.....+.....|+.++++.+..++    .-.+..|..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            488899999888873   356678899999999999987777778888899999999887222    2345678889999


Q ss_pred             eeeccCCC
Q 048165          106 DLRDCGIT  113 (124)
Q Consensus       106 ~l~~n~~~  113 (124)
                      +++.+.+.
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            88887654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.59  E-value=0.0052  Score=39.46  Aligned_cols=111  Identities=23%  Similarity=0.234  Sum_probs=72.8

Q ss_pred             CCcCcEEeccccccccCCccc---ccccccccCccEEeccCCCCcc------------hhhhccCCCCCEEEccCccccc
Q 048165            4 LRYLQVLDLSANYNITSGSLT---RLGLANLTNLKKLDLDGCGITT------------IQGLAKLKNLEALDLSSNYYLH   68 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~---~~~~~~~~~l~~L~l~~~~l~~------------~~~~~~~~~L~~l~l~~~~~~~   68 (124)
                      +..++.++++||.  +.+...   ...+..-.+|+..+++.--...            .+.+..||+|++.+++.|.+..
T Consensus        29 ~d~~~evdLSGNt--igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGNT--IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCCc--ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            4457788999998  653321   0133455678888887643221            2356679999999999999886


Q ss_pred             cchhccc----CCCCCCEEeccCCc--cCChhhh-------------cCCCCCCEEeeeccCCCCcc
Q 048165           69 GSLEGLA----NLTNLQVLDLSGNQ--NLTTLGL-------------ANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        69 ~~~~~~~----~~~~L~~l~l~~~~--~~~~~~~-------------~~~~~L~~l~l~~n~~~~~~  116 (124)
                      ..|..++    +-..+.+|.+++|+  .+....+             ..-|.|+.+..+.|.+...+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence            6665444    56789999999887  2111111             13367888888888876554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.57  E-value=0.0018  Score=40.75  Aligned_cols=63  Identities=33%  Similarity=0.395  Sum_probs=36.3

Q ss_pred             ccccccCccEEeccCC--CCcc-h-hhhccCCCCCEEEccCcccccc-chhcccCCCCCCEEeccCCc
Q 048165           27 GLANLTNLKKLDLDGC--GITT-I-QGLAKLKNLEALDLSSNYYLHG-SLEGLANLTNLQVLDLSGNQ   89 (124)
Q Consensus        27 ~~~~~~~l~~L~l~~~--~l~~-~-~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~   89 (124)
                      .+..+++|+.|.++.|  .+.. . .-.-.+|+|+++++++|.+... ....+..+.+|..|++..|.
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence            4556777777787777  3333 1 1222347788888887777631 11223344556666666665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.48  E-value=0.0024  Score=22.90  Aligned_cols=17  Identities=47%  Similarity=0.821  Sum_probs=9.7

Q ss_pred             CCCCEEeeeccCCCCcc
Q 048165          100 PNLKTLDLRDCGITTIQ  116 (124)
Q Consensus       100 ~~L~~l~l~~n~~~~~~  116 (124)
                      ++|+.|++++|.+.++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            36788888888877654

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.46  E-value=0.002  Score=24.72  Aligned_cols=18  Identities=39%  Similarity=0.385  Sum_probs=10.1

Q ss_pred             CCEEEccCccccccchhcc
Q 048165           56 LEALDLSSNYYLHGSLEGL   74 (124)
Q Consensus        56 L~~l~l~~~~~~~~~~~~~   74 (124)
                      |++|++++|.++ ..|..+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            556666666665 444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.42  E-value=0.012  Score=39.87  Aligned_cols=54  Identities=13%  Similarity=0.187  Sum_probs=24.1

Q ss_pred             ccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCC
Q 048165           31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN   88 (124)
Q Consensus        31 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   88 (124)
                      |.+++.|++++|.++..+.  -..+|+.|.+.++.-....|..+.  .+|+.|.+.+|
T Consensus        51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            4555555555555554431  122455555554332223333221  34555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.18  E-value=0.023  Score=38.59  Aligned_cols=53  Identities=25%  Similarity=0.349  Sum_probs=27.5

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCC-CCcchhhhccCCCCCEEEccCc
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC-GITTIQGLAKLKNLEALDLSSN   64 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~l~~~~~~~~~~~L~~l~l~~~   64 (124)
                      |.+++.|++++|.  +. .+| . +  -.+|+.|.+++| .++..+.. -.++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~--L~-sLP-~-L--P~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCD--IE-SLP-V-L--PNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCC--Cc-ccC-C-C--CCCCcEEEccCCCCcccCCch-hhhhhhheEccCc
Confidence            5677788888875  54 334 1 1  123666676654 33332211 0235555555555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.001  Score=40.50  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=14.8

Q ss_pred             CCEEEccCccccccchhcccCCCCCCEEeccCCc
Q 048165           56 LEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ   89 (124)
Q Consensus        56 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   89 (124)
                      ++.++.+++.+.....+.+..+++++.+.+.+|+
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            3444444444443333444444444444444444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.11  E-value=0.0013  Score=44.09  Aligned_cols=92  Identities=27%  Similarity=0.376  Sum_probs=37.6

Q ss_pred             cccCccEEeccCCC-Ccc--hhh-hccCCCCCEEEccCcccc--ccchhcccCCCCCCEEeccCCccCChhhhc------
Q 048165           30 NLTNLKKLDLDGCG-ITT--IQG-LAKLKNLEALDLSSNYYL--HGSLEGLANLTNLQVLDLSGNQNLTTLGLA------   97 (124)
Q Consensus        30 ~~~~l~~L~l~~~~-l~~--~~~-~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~------   97 (124)
                      ++.+|+++.+.+|+ ++.  ... -.+++.|+.+++..+...  ....+.-..|+.++.+.+++|..++...+.      
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            34555555555553 222  111 113444555555444322  111122224555555555555433222111      


Q ss_pred             -CCCCCCEEeeeccCCCCccccccc
Q 048165           98 -NLPNLKTLDLRDCGITTIQGIQQF  121 (124)
Q Consensus        98 -~~~~L~~l~l~~n~~~~~~~~~~l  121 (124)
                       ....++.+.++.++......++++
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l  422 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHL  422 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHH
Confidence             223445555555554444444333

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.95  E-value=0.0047  Score=42.05  Aligned_cols=105  Identities=40%  Similarity=0.502  Sum_probs=65.6

Q ss_pred             CCCcCcEEeccccccccC--CcccccccccccCccEEeccCCC-Ccc--hhhhc-cCCCCCEEEccCcc-ccccchhccc
Q 048165            3 NLRYLQVLDLSANYNITS--GSLTRLGLANLTNLKKLDLDGCG-ITT--IQGLA-KLKNLEALDLSSNY-YLHGSLEGLA   75 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~--~~~~~~~~~~~~~l~~L~l~~~~-l~~--~~~~~-~~~~L~~l~l~~~~-~~~~~~~~~~   75 (124)
                      .++.|+.++++++.....  ..........+++++.++++++. +++  ...+. .++.|+.+.+.++. +++.....+.
T Consensus       212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~  291 (482)
T KOG1947|consen  212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA  291 (482)
T ss_pred             hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence            578889999887311111  01111234567889999999987 666  23333 37899999987777 5644444444


Q ss_pred             -CCCCCCEEeccCCccCCh----hhhcCCCCCCEEee
Q 048165           76 -NLTNLQVLDLSGNQNLTT----LGLANLPNLKTLDL  107 (124)
Q Consensus        76 -~~~~L~~l~l~~~~~~~~----~~~~~~~~L~~l~l  107 (124)
                       .++.|+++++..|..+..    .....|++++.+.+
T Consensus       292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence             678899999998873211    22345666666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.88  E-value=0.026  Score=22.36  Aligned_cols=19  Identities=37%  Similarity=0.714  Sum_probs=15.4

Q ss_pred             CCCCCEEeeeccCCCCccc
Q 048165           99 LPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        99 ~~~L~~l~l~~n~~~~~~~  117 (124)
                      +.+|+.|++++|.+..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            3578899999999988874

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.88  E-value=0.026  Score=22.36  Aligned_cols=19  Identities=37%  Similarity=0.714  Sum_probs=15.4

Q ss_pred             CCCCCEEeeeccCCCCccc
Q 048165           99 LPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        99 ~~~L~~l~l~~n~~~~~~~  117 (124)
                      +.+|+.|++++|.+..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCCcCCcCCH
Confidence            3578899999999988874

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.76  E-value=0.0084  Score=23.35  Aligned_cols=15  Identities=53%  Similarity=0.616  Sum_probs=6.4

Q ss_pred             CCCCEEEccCccccc
Q 048165           54 KNLEALDLSSNYYLH   68 (124)
Q Consensus        54 ~~L~~l~l~~~~~~~   68 (124)
                      ++|++|++++|.+.+
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555443

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.59  E-value=0.043  Score=37.27  Aligned_cols=108  Identities=31%  Similarity=0.404  Sum_probs=66.4

Q ss_pred             CCCCcCcEEeccccccccCCccccccc-ccccCccEEeccCCCCcc---h-hhhccCCCCCEEEccCcccc-ccchhccc
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGL-ANLTNLKKLDLDGCGITT---I-QGLAKLKNLEALDLSSNYYL-HGSLEGLA   75 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~l~~---~-~~~~~~~~L~~l~l~~~~~~-~~~~~~~~   75 (124)
                      .++++|+++.+++|+. ++ ......+ .++++|+.+++.++....   . ..-..++.|+.+.++.+... +.....+.
T Consensus       317 ~~~~~L~~l~l~~c~~-fs-d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~  394 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQ-FS-DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS  394 (483)
T ss_pred             cCCCceEEEeccccch-hh-hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence            3578899999999873 22 2221222 368889999998885443   1 23346788999888876532 22112222


Q ss_pred             ----CCCCCCEEeccCCccCChh---hhcCCCCCCEEeeeccC
Q 048165           76 ----NLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCG  111 (124)
Q Consensus        76 ----~~~~L~~l~l~~~~~~~~~---~~~~~~~L~~l~l~~n~  111 (124)
                          ....++.+.+.++..++..   .+..|++|+.+++-.++
T Consensus       395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence                3456777788888744332   34567788887776553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=0.0066  Score=37.07  Aligned_cols=56  Identities=30%  Similarity=0.449  Sum_probs=23.4

Q ss_pred             ccEEeccCCCCcc--hhhhccCCCCCEEEccCcccc-ccchhccc-CCCCCCEEeccCCc
Q 048165           34 LKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYL-HGSLEGLA-NLTNLQVLDLSGNQ   89 (124)
Q Consensus        34 l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~-~~~~L~~l~l~~~~   89 (124)
                      ++.++-+++.|..  ...+..++.++.+.+.+|.-- +-..+.++ -.++|+.|++++|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~  162 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP  162 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence            3444444444433  234444555555555544321 11111111 23455555555555

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=93.91  E-value=0.063  Score=21.52  Aligned_cols=20  Identities=35%  Similarity=0.559  Sum_probs=16.2

Q ss_pred             CCCCEEeeeccCCCCccccc
Q 048165          100 PNLKTLDLRDCGITTIQGIQ  119 (124)
Q Consensus       100 ~~L~~l~l~~n~~~~~~~~~  119 (124)
                      .+|+.|+++.|.|..+..+.
T Consensus         2 ~~L~~L~L~~NkI~~IEnL~   21 (26)
T smart00365        2 TNLEELDLSQNKIKKIENLD   21 (26)
T ss_pred             CccCEEECCCCccceecCcc
Confidence            57888999999988877665

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.66  E-value=0.085  Score=21.14  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=16.8

Q ss_pred             CCCCEEeeeccCCCCcccccc
Q 048165          100 PNLKTLDLRDCGITTIQGIQQ  120 (124)
Q Consensus       100 ~~L~~l~l~~n~~~~~~~~~~  120 (124)
                      ++|+.|++++|.++++|.+..
T Consensus         2 ~~L~~L~vs~N~Lt~LPeL~~   22 (26)
T smart00364        2 PSLKELNVSNNQLTSLPELXX   22 (26)
T ss_pred             cccceeecCCCccccCccccc
Confidence            468889999999999887543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.28  E-value=0.055  Score=21.46  Aligned_cols=14  Identities=57%  Similarity=0.805  Sum_probs=6.9

Q ss_pred             CCCCEEeccCCccC
Q 048165           78 TNLQVLDLSGNQNL   91 (124)
Q Consensus        78 ~~L~~l~l~~~~~~   91 (124)
                      ++|++|++++|..+
T Consensus         2 ~~L~~L~l~~C~~i   15 (26)
T smart00367        2 PNLRELDLSGCTNI   15 (26)
T ss_pred             CCCCEeCCCCCCCc
Confidence            44555555555433

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=88.03  E-value=0.43  Score=19.24  Aligned_cols=14  Identities=29%  Similarity=0.506  Sum_probs=7.0

Q ss_pred             CccEEeccCCCCcc
Q 048165           33 NLKKLDLDGCGITT   46 (124)
Q Consensus        33 ~l~~L~l~~~~l~~   46 (124)
                      +|++|++++|.+..
T Consensus         3 ~L~~LdL~~N~i~~   16 (28)
T smart00368        3 SLRELDLSNNKLGD   16 (28)
T ss_pred             ccCEEECCCCCCCH
Confidence            34555555555443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.94  E-value=0.73  Score=32.65  Aligned_cols=58  Identities=28%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             ccCccEEeccCCCCcchh---hh-ccCCCCCEEEccCc--ccccc-chhcccCCCCCCEEeccCCc
Q 048165           31 LTNLKKLDLDGCGITTIQ---GL-AKLKNLEALDLSSN--YYLHG-SLEGLANLTNLQVLDLSGNQ   89 (124)
Q Consensus        31 ~~~l~~L~l~~~~l~~~~---~~-~~~~~L~~l~l~~~--~~~~~-~~~~~~~~~~L~~l~l~~~~   89 (124)
                      .+.+..+.+++|++-.+.   .+ ...|+|.+|+|++|  .+... ....+ ....|+++.+.+|.
T Consensus       217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNP  281 (585)
T KOG3763|consen  217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNP  281 (585)
T ss_pred             CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCc
Confidence            445566666666655532   22 23566777777776  22211 00111 22346666666665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.66  E-value=0.022  Score=35.89  Aligned_cols=56  Identities=20%  Similarity=0.164  Sum_probs=23.5

Q ss_pred             ccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEEec
Q 048165           29 ANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDL   85 (124)
Q Consensus        29 ~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   85 (124)
                      ......+.+|++.|.+... ..+..+..+..++++.|.+. ..|..+.....++.+++
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~   95 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAAS   95 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHh
Confidence            3444455555555544332 23333344444455444443 33333333333333333

>TIGR00864 PCC polycystin cation channel protein

Probab=82.45  E-value=0.84  Score=38.28  Aligned_cols=28  Identities=43%  Similarity=0.364  Sum_probs=13.6

Q ss_pred             ccCccccccchhcccCCCCCCEEeccCC
Q 048165           61 LSSNYYLHGSLEGLANLTNLQVLDLSGN   88 (124)
Q Consensus        61 l~~~~~~~~~~~~~~~~~~L~~l~l~~~   88 (124)
                      |++|++....+..|..+.+|+.|+|.+|
T Consensus         2 LSnN~LstLp~g~F~~L~sL~~LdLsgN   29 (2740)
T TIGR00864         2 ISNNKISTIEEGICANLCNLSEIDLSGN   29 (2740)
T ss_pred             CCCCcCCccChHHhccCCCceEEEeeCC
Confidence            4555555333334444555555555544

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.00  E-value=0.016  Score=36.54  Aligned_cols=83  Identities=19%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      +.+...+.|+++.|+  .. ... ..+.-+..+..++++.|.+... ..+++...+..++...|... ..|..+...+.+
T Consensus        39 ~~~kr~tvld~~s~r--~v-n~~-~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNR--LV-NLG-KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hccceeeeehhhhhH--HH-hhc-cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            345667788888887  43 223 3455677788899999888774 46666666777777777666 778888888899


Q ss_pred             CEEeccCCc
Q 048165           81 QVLDLSGNQ   89 (124)
Q Consensus        81 ~~l~l~~~~   89 (124)
                      +++++-.+.
T Consensus       114 k~~e~k~~~  122 (326)
T KOG0473|consen  114 KKNEQKKTE  122 (326)
T ss_pred             chhhhccCc
Confidence            998888775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		5e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		5e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		5e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		5e-06
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		9e-06
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		1e-05

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 17  NITSGSLTRL-GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLA 75
           N +S  +T L  LANLT L++LD+    ++ I  LAKL NLE+L  ++N      +  L 
Sbjct: 157 NFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLG 214
Query: 76  NLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
            LTNL  L L+GNQ L  +G LA+L NL  LDL +  I+ +  +   T
Sbjct: 215 ILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 261

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 1   LANLRYLQVLDLSANYNITSGSLTRL-GLANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
           L+ L  LQ L  S+N       +T L  LANLT L++LD+    ++ I  LAKL NLE+L
Sbjct: 147 LSGLTSLQQLSFSSN------QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 200
Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGI 118
             ++N      +  L  LTNL  L L+GNQ L  +G LA+L NL  LDL +  I+ +  +
Sbjct: 201 IATNNQI--SDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 119 QQFT 122
              T
Sbjct: 258 SGLT 261

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 1   LANLRYLQVLDLSANYNITSGSLTRL-GLANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
           L+ L  LQ L  S+N       +T L  LANLT L++LD+    ++ I  LAKL NLE+L
Sbjct: 147 LSGLTSLQQLSFSSNQ------VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 200
Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-LANLPNLKTLDLRDCGITTIQGI 118
             ++N      +  L  LTNL  L L+GNQ L  +G LA+L NL  LDL +  I+ +  +
Sbjct: 201 IATNNQI--SDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 119 QQFT 122
              T
Sbjct: 258 SGLT 261

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
           LANLT L++LD+    ++ I  LAKL NLE+L  ++N      +  L  LTNL  L L+G
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 225
Query: 88  NQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
           NQ L  +G LA+L NL  LDL +  I+ +  +   T
Sbjct: 226 NQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 260

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
           LANLT L++LD+    ++ I  LAKL NLE+L  ++N      +  L  LTNL  L L+G
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 225
Query: 88  NQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
           NQ L  +G LA+L NL  LDL +  I+ +  +   T
Sbjct: 226 NQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 260

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
           LANLT L++LD+    ++ I  LAKL NLE+L  ++N      +  L  LTNL  L L+G
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 230
Query: 88  NQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
           NQ L  +G LA+L NL  LDL +  I+ +  +   T
Sbjct: 231 NQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 265

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
           LANLT L++LD+    ++ I  LAKL NLE+L  ++N      +  L  LTNL  L L+G
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 229
Query: 88  NQNLTTLG-LANLPNLKTLDLRDCGITTIQGIQQFT 122
           NQ L  +G LA+L NL  LDL +  I+ +  +   T
Sbjct: 230 NQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 264

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 1   LANLRYLQVLDLSANY--NITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEA 58
           L NL  +  L+LS N   N+++       +A L ++K LDL    IT +  LA L NL+ 
Sbjct: 81  LKNLTKITELELSGNPLKNVSA-------IAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRDCGITTIQG 117
           L L  N   +  +  LA LTNLQ L + GN  ++ L  LANL  L TL   D  I+ I  
Sbjct: 134 LYLDLNQITN--ISPLAGLTNLQYLSI-GNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
Query: 118 I 118
           +
Sbjct: 191 L 191

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 1   LANLRYLQVLDLSANYNITSGSLTRL-GLANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
           +A L+ ++ LDL      TS  +T +  LA L+NL+ L LD   IT I  LA L NL+ L
Sbjct: 109 IAGLQSIKTLDL------TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 162
Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGI 118
            + +N      L  LANL+ L  L    N+      LA+LPNL  + L+D  I+ +  +
Sbjct: 163 SIGNNQV--NDLTPLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPL 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-10
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-10
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 7e-22
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
                     +L    ++T           L ++ ++  +   I ++QG+  L N+  L 
Sbjct: 17  DDAFAETIKDNLKKK-SVTDAV----TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLF 71

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L+ N      ++ L NL NL  L L  N+      L +L  LK+L L   GI+ I G+  
Sbjct: 72  LNGN--KLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVH 129

Query: 121 FTS 123
              
Sbjct: 130 LPQ 132

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 7e-22
 Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +  L  +  L L+ N  +T        L NL NL  L LD   I  +  L  LK L++L 
Sbjct: 61  IQYLPNVTKLFLNGN-KLTDIK----PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L  N      + GL +L  L+ L L  N+      L+ L  L TL L D  I+ I  +  
Sbjct: 116 LEHNGI--SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 173

Query: 121 FTS 123
            T 
Sbjct: 174 LTK 176

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 5e-18
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
                    K +L    +T      +L +++ +  +++     S++G+  L N+  L L+
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLN 73

Query: 87  GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
           GN+      L NL NL  L L +  I  +  ++    
Sbjct: 74  GNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK 110

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 41/126 (32%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L +L  L+ L L  N  IT  +     L+ LT L  L L+   I+ I  LA L  L+ L 
Sbjct: 127 LVHLPQLESLYLGNN-KITDIT----VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 181

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGI 118
           LS N+     L  LA L NL VL+L   +  N      +NL    T+   D  + T + I
Sbjct: 182 LSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239

Query: 119 QQFTSY 124
                Y
Sbjct: 240 SDDGDY 245

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 34  LKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTT 93
           + +       I  I            +L               L ++  +  + +   + 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSV 58

Query: 94  LGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
            G+  LPN+  L L    +T I+ +    +
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDIKPLTNLKN 88

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L+ L  L  L L  N  I+        LA LT L+ L L    I+ ++ LA LKNL+ L+
Sbjct: 149 LSRLTKLDTLSLEDN-QISDIV----PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 203

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGI 118
           L S   L+  +   +NL     +  +    +T   +++  + +  +++         +
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.2 bits (201), Expect = 2e-20
 Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEA 58
           +     ++ L ++   + T+ +     ++ L+NL++L + G  +T+  I  L+ L +L  
Sbjct: 62  IEYAHNIKDLTINNI-HATNYN----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRDCGITTIQG 117
           LD+S + +    L  +  L  +  +DLS N  +T +  L  LP LK+L+++  G+   +G
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG 176

Query: 118 IQQFTS 123
           I+ F  
Sbjct: 177 IEDFPK 182

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 7e-17
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT--TIQGLAKLKNLEA 58
           ++ L  L+ L +    ++TS  +    L+ LT+L  LD+         +  +  L  + +
Sbjct: 84  ISGLSNLERLRIMGK-DVTSDKIP--NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
           +DLS N  +   +  L  L  L+ L++  +      G+ + P L  L      I   +
Sbjct: 141 IDLSYNGAI-TDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 1e-14
 Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 15  NYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGL 74
           N  +   S   +  A + +L  + L    +T + G+    N++ L +++ +    +   +
Sbjct: 27  NGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYNPI 84

Query: 75  ANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT 113
           + L+NL+ L + G    +     L+ L +L  LD+      
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 7e-19
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
                     +L    ++T           L ++ ++  +   I ++QG+  L N+  L 
Sbjct: 20  DDAFAETIKDNLKKK-SVTDAV----TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLF 74

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L+ N      ++ LANL NL  L L  N+      L +L  LK+L L   GI+ I G+  
Sbjct: 75  LNGNK--LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 121 FTS 123
              
Sbjct: 133 LPQ 135

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           LANL+ L  L L  N  +   S     L +L  LK L L+  GI+ I GL  L  LE+L 
Sbjct: 86  LANLKNLGWLFLDEN-KVKDLS----SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L +N      +  L+ LT L  L L  NQ    + LA L  L+ L L    I+ ++ +  
Sbjct: 141 LGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 198

Query: 121 FTS 123
             +
Sbjct: 199 LKN 201

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.4 bits (178), Expect = 1e-16
 Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L +L+ L+ L L  N  I+  +    GL +L  L+ L L    IT I  L++L  L+ L 
Sbjct: 108 LKDLKKLKSLSLEHN-GISDIN----GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 162

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L  N      +  LA LT LQ L LS N       LA L NL  L+L         
Sbjct: 163 LEDNQIS--DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 9e-16
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
                    K +L    +T      +L +++ +  +++     S++G+  L N+  L L+
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLN 76

Query: 87  GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
           GN+      LANL NL  L L +  +  +  ++    
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKK 113

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L+ L  L  L L  N  I+        LA LT L+ L L    I+ ++ LA LKNL+ L+
Sbjct: 152 LSRLTKLDTLSLEDN-QISDIV----PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 206

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
           L S   L+  +   +NL     +  +    +T   +++  + +  ++
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
           I  I            +L               L ++  +  + +   +  G+  LPN+ 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71

Query: 104 TLDLRDCGITTIQGIQQFTS 123
            L L    +T I+ +    +
Sbjct: 72  KLFLNGNKLTDIKPLANLKN 91

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.6 bits (192), Expect = 3e-18
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           LANL  +  L+L AN+N++  S     L+N+T L  L +    +  +  +A L +L +L 
Sbjct: 128 LANLTKMYSLNLGANHNLSDLS----PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS 183

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L+ N      +  LA+LT+L       NQ      +AN+  L +L + +  IT +  +  
Sbjct: 184 LNYNQI--EDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLAN 241

Query: 121 FTS 123
            + 
Sbjct: 242 LSQ 244

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.8 bits (190), Expect = 5e-18
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L+NL  L  L +  N  IT  S     L NLTNL++L L+   I+ I  LA L  + +L+
Sbjct: 84  LSNLVKLTNLYIGTN-KITDIS----ALQNLTNLRELYLNEDNISDISPLANLTKMYSLN 138

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L +N +    L  L+N+T L  L ++ ++      +ANL +L +L L    I  I  +  
Sbjct: 139 LGAN-HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLAS 197

Query: 121 FTS 123
            TS
Sbjct: 198 LTS 200

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +AN+  L  L +  N  IT  S     LANL+ L  L++    I+ I  +  L  L+ L+
Sbjct: 217 VANMTRLNSLKIGNN-KITDLS----PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLN 271

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGI 118
           + SN      +  L NL+ L  L L+ NQ  N     +  L NL TL L    IT I+ +
Sbjct: 272 VGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329

Query: 119 QQFTS 123
              + 
Sbjct: 330 ASLSK 334

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
            A+L       L    ++T           L ++ KL + G  + +IQG+  L NLE L+
Sbjct: 18  DADLAEGIRAVLQKA-SVTDVV----TQEELESITKLVVAGEKVASIQGIEYLTNLEYLN 72

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L+ N      +  L+NL  L  L +  N+      L NL NL+ L L +  I+ I  +  
Sbjct: 73  LNGNQI--TDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLAN 130

Query: 121 FTS 123
            T 
Sbjct: 131 LTK 133

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           LANL  L  L++  N  I+  +     + +LT LK L++    I+ I  L  L  L +L 
Sbjct: 239 LANLSQLTWLEIGTN-QISDIN----AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGIT 113
           L++N   +  +E +  LTNL  L LS N       LA+L  + + D  +  I 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.9 bits (172), Expect = 1e-15
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           LA+L  L       N  IT  +     +AN+T L  L +    IT +  LA L  L  L+
Sbjct: 195 LASLTSLHYFTAYVN-QITDIT----PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLE 249

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRDCGITTI 115
           + +N      +  + +LT L++L++  NQ ++ +  L NL  L +L L +  +   
Sbjct: 250 IGTNQI--SDINAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNE 302

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 9e-15
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              L  +  L ++    + S      G+  LTNL+ L+L+G  IT I  L+ L  L  L 
Sbjct: 40  QEELESITKLVVAGE-KVASIQ----GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLY 94

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
           + +N      +  L NLTNL+ L L+ +       LANL  + +L+L      + 
Sbjct: 95  IGTN--KITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD 147

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 5e-10
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 34  LKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTT 93
              L      I  I   A L       L         +     L ++  L ++G +  + 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASV--TDVVTQEELESITKLVVAGEKVASI 59

Query: 94  LGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
            G+  L NL+ L+L    IT I  +     
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVK 89

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.7 bits (184), Expect = 2e-17
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
            A+L  +  L       +T+      G+  L NL  L+L    IT +  L  L  +  L+
Sbjct: 37  QADLDGITTLSAFGT-GVTTIE----GVQYLNNLIGLELKDNQITDLAPLKNLTKITELE 91

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           LS N     ++  +A L +++ LDL+  Q      LA L NL+ L L    IT I  +  
Sbjct: 92  LSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAG 149

Query: 121 FTS 123
            T+
Sbjct: 150 LTN 152

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 3e-17
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +A L+ ++ LDL++   IT  +     LA L+NL+ L LD   IT I  LA L NL+ L 
Sbjct: 103 IAGLQSIKTLDLTST-QITDVT----PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           + +       L  LANL+ L  L    N+      LA+LPNL  + L++  I+ +  +  
Sbjct: 158 IGNAQV--SDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLAN 215

Query: 121 FTS 123
            ++
Sbjct: 216 TSN 218

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 4e-17
 Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              L     +    + N+T         A+L  +  L   G G+TTI+G+  L NL  L+
Sbjct: 15  DPALANAIKIAAGKS-NVTDTV----TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLE 69

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L  N      L  L NLT +  L+LSGN       +A L ++KTLDL    IT +  +  
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 121 FTS 123
            ++
Sbjct: 128 LSN 130

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 4e-17
 Identities = 41/120 (34%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           LA L  LQVL L  N  IT+ S     LA LTNL+ L +    ++ +  LA L  L  L 
Sbjct: 125 LAGLSNLQVLYLDLN-QITNIS----PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
              N      +  LA+L NL  + L  NQ      LAN  NL  + L +  IT       
Sbjct: 180 ADDNKIS--DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
               L N  K+      +T     A L  +  L          ++EG+  L NL  L+L 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELK 71

Query: 87  GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
            NQ      L NL  +  L+L    +  +  I    S
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS 108

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
           I  I     L N   +    +          A+L  +  L   G    T  G+  L NL 
Sbjct: 9   INVIFPDPALANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 104 TLDLRDCGITTIQGIQQFTS 123
            L+L+D  IT +  ++  T 
Sbjct: 67  GLELKDNQITDLAPLKNLTK 86

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.3 bits (183), Expect = 2e-17
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              L  +Q  +   + NI S +    G+   TNLK+L L    I+ +  L  L  LE L 
Sbjct: 37  QKELSGVQNFNGDNS-NIQSLA----GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELS 91

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           ++ N     +L G+ +   L  L L  N+   T  L +L NL+ L +R+  + +I  +  
Sbjct: 92  VNRNRLK--NLNGIPSA-CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGF 148

Query: 121 FTS 123
            + 
Sbjct: 149 LSK 151

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
               L N  K +L    +T +    +L  ++  +  ++     SL G+   TNL+ L LS
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLS 71

Query: 87  GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQ 119
            NQ      L +L  L+ L +    +  + GI 
Sbjct: 72  HNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP 104

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L +L  L+ L ++ N       L  L       L +L LD   +     L  LKNLE L 
Sbjct: 81  LKDLTKLEELSVNRNR------LKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILS 134

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
           + +N     S+  L  L+ L+VLDL GN+   T GL  L  +  +DL         
Sbjct: 135 IRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
           I  +     L N    +L         L     L+ +Q  +   +   +  G+    NLK
Sbjct: 9   INQVFPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLK 66

Query: 104 TLDLRDCGITTIQGIQQFTS 123
            L L    I+ +  ++  T 
Sbjct: 67  ELHLSHNQISDLSPLKDLTK 86

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L +L+ L++L +  N  + S       L  L+ L+ LDL G  IT   GL +LK +  +D
Sbjct: 124 LIHLKNLEILSIRNN-KLKSIV----MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWID 178

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
           L+    ++  ++    L     +     + ++   ++N  +     +
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCV 225

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.2 bits (185), Expect = 3e-17
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 4/119 (3%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              +  L+ LDL     ++   ++      L+NL+ L+L  C +  I  L  L  L+ LD
Sbjct: 156 FNRIPSLRRLDLGELKRLSY--ISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELD 213

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117
           LS N+           L +LQ L +  +Q   +      NL +L  ++L    +T +  
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
             +LR+L++L LS N +I +  +       L NL  L+L    +TTI       L  L+ 
Sbjct: 84  FKHLRHLEILQLSRN-HIRT--IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITTI 115
           L L +N            + +L+ LDL   + L+ +       L NL+ L+L  C +  I
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200

Query: 116 QGIQQFTS 123
             +     
Sbjct: 201 PNLTPLIK 208

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
            ++L+L  N  I    +      +L +L+ L L    I TI+      L NL  L+L  N
Sbjct: 66  TRLLNLHEN-QIQI--IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDC-GITTIQ 116
                       L+ L+ L L  N   ++ +     +P+L+ LDL +   ++ I 
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 32  TNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
           TN + L+L    I  I+      L++LE L LS N+     +     L NL  L+L  N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 90  NLTTLG---LANLPNLKTLDLRDCGITTIQ 116
            LTT+       L  LK L LR+  I +I 
Sbjct: 124 -LTTIPNGAFVYLSKLKELWLRNNPIESIP 152

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
           L  L  L  LDLS N ++++  +       L +L+KL +    I  I+      L++L  
Sbjct: 203 LTPLIKLDELDLSGN-HLSA--IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
           ++L+ N       +    L +L+ + L  N
Sbjct: 260 INLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 3e-17
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              +  L  LDL     +    ++      L NLK L+L  C I  +  L  L  LE L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEY--ISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE 224

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117
           +S N++          L++L+ L +  +Q   +       L +L  L+L    ++++  
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 5e-16
 Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
             +L +L+VL L  N +I    +       L +L  L+L    +T I       L  L  
Sbjct: 95  FRHLHHLEVLQLGRN-SIRQ--IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITTI 115
           L L +N            + +L  LDL   + L  +       L NLK L+L  C I  +
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211

Query: 116 Q 116
            
Sbjct: 212 P 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 5e-14
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
            + L+L  N NI    +      +L +L+ L L    I  I+      L +L  L+L  N
Sbjct: 77  TRYLNLMEN-NIQM--IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCG-ITTIQ 116
           +           L+ L+ L L  N   ++ +     +P+L  LDL +   +  I 
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 32  TNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
           +N + L+L    I  IQ      L +LE L L  N      +     L +L  L+L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 90  NLTTLG---LANLPNLKTLDLRDCGITTIQ 116
            LT +       L  L+ L LR+  I +I 
Sbjct: 135 -LTVIPSGAFEYLSKLRELWLRNNPIESIP 163

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 6e-11
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
           L  L  L+ L++S N +     +       L++LKKL +    ++ I+      L +L  
Sbjct: 214 LTPLVGLEELEMSGN-HFPE--IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
           L+L+ N       +    L  L  L L  N
Sbjct: 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.8 bits (183), Expect = 5e-17
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 1   LANLRYLQVLDLSANYNITSGSL--TRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEA 58
            + L+ +  +  +   ++ S  L    +      +++ L L    +T +  L +L  +  
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTH 467

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRDCGITTIQG 117
           LDLS N  L      LA L  L+VL  S N  L  + G+ANLP L+ L L +  +     
Sbjct: 468 LDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNRLQQSAA 525

Query: 118 IQQFTS 123
           IQ   S
Sbjct: 526 IQPLVS 531

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.4 bits (182), Expect = 7e-17
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 15/108 (13%)

Query: 8   QVLDLSANYNITSGSLTRL-GLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNY 65
           +VL L+         LT L  L  L  +  LDL    +  +   LA L+ LE L  S N 
Sbjct: 444 RVLHLAHK------DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 497

Query: 66  YLHGSLEGLANLTNLQVLDLSGNQNLTTL----GLANLPNLKTLDLRD 109
               +++G+ANL  LQ L L  N+ L        L + P L  L+L+ 
Sbjct: 498 LE--NVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.0 bits (181), Expect = 8e-17
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 14/114 (12%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRL--GLANLTNLKKLDLDGCGITTIQGLAKLKNLEA 58
           L  L  +  LDLS N       L  L   LA L  L+ L      +  + G+A L  L+ 
Sbjct: 459 LEQLLLVTHLDLSHNR------LRALPPALAALRCLEVLQASDNALENVDGVANLPRLQE 512

Query: 59  LDLSSNY-YLHGSLEGLANLTNLQVLDLSGNQ-----NLTTLGLANLPNLKTLD 106
           L L +N      +++ L +   L +L+L GN       +       LP++ ++ 
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 7e-11
 Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 15/124 (12%)

Query: 12  LSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKN----------LEALDL 61
           +     +      +  L   + LK +D              L            +  L L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQGIQ 119
           +        L  L  L  +  LDLS N+ L  L   LA L  L+ L   D  +  + G+ 
Sbjct: 449 AHK--DLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVDGVA 505

Query: 120 QFTS 123
               
Sbjct: 506 NLPR 509

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 8e-17
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              L  L+ LDLS N  + S  +       L  L  L LD CG+  +       L  L+ 
Sbjct: 76  FTGLALLEQLDLSDNAQLRS--VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L L  N       +   +L NL  L L GN+  ++       L +L  L L    +  + 
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              L  LQ L L  N  + +  L      +L NL  L L G  I+++       L +L+ 
Sbjct: 125 FRGLAALQYLYLQDN-ALQA--LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRD 109
           L L  N   H       +L  L  L L  N  L+ L    LA L  L+ L L D
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 32  TNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
              +++ L G  I+ +        +NL  L L SN            L  L+ LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 90  NLTTLG---LANLPNLKTLDLRDCGITTIQ 116
            L ++       L  L TL L  CG+  + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
             +L  L  L L  N  I+S  +       L +L +L L    +  +       L  L  
Sbjct: 149 FRDLGNLTHLFLHGN-RISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
           L L +N       E LA L  LQ L L+ N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L  L  L  L L+ N  +         LA+LTNL  LDL    I+ +  L+ L  L  L 
Sbjct: 217 LGILTNLDELSLNGN-QLKDIG----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L +N     ++  LA LT L  L+L+ NQ      ++NL NL  L L    I+ I  +  
Sbjct: 272 LGANQI--SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 329

Query: 121 FTS 123
            T 
Sbjct: 330 LTK 332

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              L       L       +     +   +L  +  L  D  GI +I G+  L NL  ++
Sbjct: 20  DTALAEKMKTVLGKTNVTDT-----VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQIN 74

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
            S+N      +  L NLT L  + ++ NQ      LANL NL  L L +  IT I  ++ 
Sbjct: 75  FSNNQL--TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 132

Query: 121 FTS 123
            T+
Sbjct: 133 LTN 135

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           LA+L  L  LDL+ N  I++ +     L+ LT L +L L    I+ I  LA L  L  L+
Sbjct: 239 LASLTNLTDLDLANN-QISNLA----PLSGLTKLTELKLGANQISNISPLAGLTALTNLE 293

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L+ N      +  ++NL NL  L L  N       +++L  L+ L   +  ++ +  +  
Sbjct: 294 LNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLAN 351

Query: 121 FTS 123
            T+
Sbjct: 352 LTN 354

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.9 bits (177), Expect = 4e-16
 Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           LANL  L+ LD+S+N  ++  S     LA LTNL+ L      I+ I  L  L NL+ L 
Sbjct: 173 LANLTTLERLDISSN-KVSDIS----VLAKLTNLESLIATNNQISDITPLGILTNLDELS 227

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           L+ N      +  LA+LTNL  LDL+ NQ      L+ L  L  L L    I+ I  +  
Sbjct: 228 LNGNQ--LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285

Query: 121 FTS 123
            T+
Sbjct: 286 LTA 288

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.8 bits (174), Expect = 9e-16
 Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 8/123 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L+ L  LQ L       +T        LANLT L++LD+    ++ I  LAKL NLE+L 
Sbjct: 152 LSGLTSLQQLSFG--NQVTDLK----PLANLTTLERLDISSNKVSDISVLAKLTNLESLI 205

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
            ++N      +  L  LTNL  L L+GNQ      LA+L NL  LDL +  I+ +  +  
Sbjct: 206 ATNNQI--SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 263

Query: 121 FTS 123
            T 
Sbjct: 264 LTK 266

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 8/123 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L NL  L  + ++ N  I   +     LANLTNL  L L    IT I  L  L NL  L+
Sbjct: 86  LKNLTKLVDILMNNN-QIADIT----PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 140

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           LSSN      +  L+ LT+LQ L    NQ      LANL  L+ LD+    ++ I  + +
Sbjct: 141 LSSNTI--SDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAK 197

Query: 121 FTS 123
            T+
Sbjct: 198 LTN 200

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
               L    K  L    +T       L  +  L          S++G+  L NL  ++ S
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFS 76

Query: 87  GNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
            NQ      L NL  L  + + +  I  I  +   T+
Sbjct: 77  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTN 113

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 9/126 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           ++NL+ L  L L  N NI+  S     +++LT L++L      ++ +  LA L N+  L 
Sbjct: 305 ISNLKNLTYLTLYFN-NISDIS----PVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLS 359

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGI 118
              N      L  LANLT +  L L+     N      AN+    T+      +     I
Sbjct: 360 AGHNQI--SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

Query: 119 QQFTSY 124
               SY
Sbjct: 418 SDGGSY 423

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +++L  LQ L    N  ++  S     LANLTN+  L      I+ +  LA L  +  L 
Sbjct: 327 VSSLTKLQRLFFYNN-KVSDVS----SLANLTNINWLSAGHNQISDLTPLANLTRITQLG 381

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
           L+   + +  +   AN++    +       +    +++  +    D+
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 56  LEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
           L +  ++ +  +   +     L       L       T+   +L  + TL     GI +I
Sbjct: 3   LGSATITQDTPI-NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI 61

Query: 116 QGIQQFTS 123
            G++   +
Sbjct: 62  DGVEYLNN 69

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.0 bits (174), Expect = 1e-15
 Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              L  LQ+L+L      T  ++ +    NL NL+ LDL    I  +       L +L  
Sbjct: 44  FPFLEQLQLLELG--SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101

Query: 59  LDLSSNYYLHGSLEG--LANLTNLQVLDLSGNQNLTTLGL----ANLPNLKTLDLRDCGI 112
           L L         L+     NL  L  LDLS NQ + +L L      L +LK++D     I
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 113 TTIQ 116
             + 
Sbjct: 161 FLVC 164

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 3e-14
 Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 6   YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSS 63
            ++ LDLS    + S  L       L +LK L+L    I  I       L NL+ L+LS 
Sbjct: 267 SVRHLDLSHG-FVFS--LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 64  NYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQF 121
           N            L  +  +DL  N    +       L  L+TLDLRD  +TTI  I   
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383

Query: 122 TS 123
             
Sbjct: 384 PD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 31/128 (24%), Positives = 42/128 (32%), Gaps = 10/128 (7%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI---QGLAKLKNLEAL 59
            L   + L LS N  I +  +T      L  L+ L+L           +    L NL  L
Sbjct: 22  VLNTTERLLLSFN-YIRT--VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQ----NLTTLGLANLPNLKTLDLRDCGITTI 115
           DL S+       +    L +L  L L         L      NL  L  LDL    I ++
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 116 QGIQQFTS 123
                F  
Sbjct: 139 YLHPSFGK 146

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 3e-11
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 16/129 (12%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLE 57
              L +L  L L     ++   L      NL  L +LDL    I ++       KL +L+
Sbjct: 93  FQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 58  ALDLSSN---YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPN------LKTLD 106
           ++D SSN         LE L     L    L+ N   +  ++      N      L+ LD
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 107 LRDCGITTI 115
           +   G T  
Sbjct: 211 VSGNGWTVD 219

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 9e-11
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 7/126 (5%)

Query: 3   NLRYLQVLDLSANY--NITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
               L+ L L  N         L       L++L+ L L+   + ++     + L  L  
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGI 118
           L L+SN      L       NL++LD+S NQ L         +L  LD+          +
Sbjct: 509 LSLNSNRLTV--LSHNDLPANLEILDISRNQ-LLAPNPDVFVSLSVLDITHNKFICECEL 565

Query: 119 QQFTSY 124
             F ++
Sbjct: 566 STFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 23/139 (16%)

Query: 1   LANLRYLQVLDLSAN-----YNITSGSLTRLGLANLTNLKK-------LDLDGCGITTIQ 48
              L  LQ LDL  N     + I S     L    L  L K       + L    +  + 
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417

Query: 49  G---LAKLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQ-------NLTTLGLA 97
               L ++ +L+ L L+ N +   S +   +   +L+ L L  N         L      
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 98  NLPNLKTLDLRDCGITTIQ 116
            L +L+ L L    + ++ 
Sbjct: 478 GLSHLQVLYLNHNYLNSLP 496

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 33/147 (22%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              L  LQVL+LS N  +    L       L  +  +DL    I  IQ      L+ L+ 
Sbjct: 310 FYGLDNLQVLNLSYN-LLG--ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ-------------------NLTTLG---- 95
           LDL  N     +L  +  + ++  + LSGN+                    L  L     
Sbjct: 367 LDLRDN-----ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421

Query: 96  LANLPNLKTLDLRDCGITTIQGIQQFT 122
           L  +P+L+ L L     ++  G Q  +
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPS 448

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 6e-09
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 24/136 (17%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--------- 51
              L  +  +DL  N +I    +       L  L+ LDL    +TTI  +          
Sbjct: 334 FYGLPKVAYIDLQKN-HIAI--IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390

Query: 52  -KLKNLEALDLSSN--YYLHGSLEGL------ANLTNLQVLDLSGNQNLTTLG---LANL 99
            KL  L  ++L++N  +     LE L        + +LQ+L L+ N+  +  G    +  
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 100 PNLKTLDLRDCGITTI 115
           P+L+ L L +  +   
Sbjct: 451 PSLEQLFLGENMLQLA 466

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              L +LQVL L+ N  + S  L     ++LT L+ L L+   +T +       NLE LD
Sbjct: 476 FEGLSHLQVLYLNHN-YLNS--LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILD 532

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNL 102
           +S N  L  + +      +L VLD++ N+ +    L+   N 
Sbjct: 533 ISRNQLLAPNPD---VFVSLSVLDITHNKFICECELSTFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 35  KKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL 94
           +      C +T +     L   E L LS NY    +      L  LQ+L+L       T+
Sbjct: 7   RIAFYRFCNLTQV--PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 95  G---LANLPNLKTLDLRDCGITTIQ 116
                 NLPNL+ LDL    I  + 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLH 89

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 23/136 (16%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANL---TNLKKLDLDGCGIT--------------T 46
            + L    L+AN   +  S+      N      L+ LD+ G G T               
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 47  IQGLAKLKNLEALDLSSNYYLH---GSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPN 101
              L    ++       +        +  GLA  ++++ LDLS     +L +     L +
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 102 LKTLDLRDCGITTIQG 117
           LK L+L    I  I  
Sbjct: 292 LKVLNLAYNKINKIAD 307

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 68.2 bits (167), Expect = 1e-15
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTN-LQVLDL 85
            L+ L   K L L    I  I  L+ ++NL  L L  N      +E L  + + L+ L +
Sbjct: 43  TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWI 100

Query: 86  SGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
           S NQ  +  G+  L NL+ L + +  IT    I +  +
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 68.2 bits (167), Expect = 2e-15
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKL-KNLEAL 59
           L+ L+  + L LS N NI   S     L+ + NL+ L L    I  I+ L  +   LE L
Sbjct: 44  LSTLKACKHLALSTN-NIEKIS----SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLG-LANLPNLKTLDLRDCGITTIQ 116
            +S N     SL G+  L NL+VL +S N+  N   +  LA L  L+ L L    +    
Sbjct: 99  WISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 117 GIQQ 120
               
Sbjct: 157 KENN 160

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 14/124 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRL--GLANLTNLKKLDLDGCGITTIQG---LAKLKN 55
                 L+ LDLS N       +  +      L  L+ LD     +  +        L+N
Sbjct: 74  DFGTTSLKYLDLSFN------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 56  LEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCGI 112
           L  LD+S  +           L++L+VL ++GN             L NL  LDL  C +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 113 TTIQ 116
             + 
Sbjct: 188 EQLS 191

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGL-ANLTNLKKLDLDGCGITTIQG--LAKLKNLE 57
              L  L+ LD   + N+    ++   +  +L NL  LD+               L +LE
Sbjct: 97  FLGLEQLEHLDFQHS-NLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 58  ALDLSSNYYLHGSLEG-LANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114
            L ++ N +    L      L NL  LDLS  Q   L+     +L +L+ L++      +
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 115 IQ 116
           + 
Sbjct: 214 LD 215

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              L  L+VL ++ N    +          L NL  LDL  C +  +       L +L+ 
Sbjct: 146 FNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLP-NLKTLDLRD 109
           L++S N +          L +LQVLD S N         L + P +L  L+L  
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC-GITTIQG--LAKLKNLE 57
             +LR L  LD+S   +             L++L+ L + G             +L+NL 
Sbjct: 122 FLSLRNLIYLDISHT-HTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115
            LDLS       S     +L++LQVL++S N   +L T     L +L+ LD     I T 
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 116 Q 116
           +
Sbjct: 239 K 239

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 32  TNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLA--NLTNLQVLDLSG 87
           ++  +L+L+   + ++      KL  L  L LSSN          +    T+L+ LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 88  NQNLTTL--GLANLPNLKTLDLRDCGITTIQGIQQFTS 123
           N  + T+      L  L+ LD +   +  +     F S
Sbjct: 88  NG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-----TIQGLAKLKN 55
           L +   L+ L++S+N           G   L +L+ LDL    I+               
Sbjct: 122 LGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 56  LEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGIT 113
           L+ L +S N  + G ++ ++   NL+ LD+S N N +T    L +   L+ LD+    ++
Sbjct: 180 LKHLAISGN-KISGDVD-VSRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              L  L+VLDLSAN    +  +  +       LK L + G  I+    +++  NLE LD
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD 206

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLT---TLGLANLPNLKTLDLRDCGIT 113
           +SSN      +  L + + LQ LD+SGN  L+   +  ++    LK L++      
Sbjct: 207 VSSNN-FSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 14/123 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG----ITTIQGLAKLKNL 56
           L +L  L+ L LS ++   +GS++        +L  LDL        +TT+  L     L
Sbjct: 73  LLSLTGLESLFLSNSH--INGSVSGFK--CSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128

Query: 57  EALDLSSNYY-LHGSLEGLANLTNLQVLDLSGNQ-----NLTTLGLANLPNLKTLDLRDC 110
           + L++SSN     G + G   L +L+VLDLS N       +  +       LK L +   
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 111 GIT 113
            I+
Sbjct: 189 KIS 191

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 5e-13
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TIQGLAKLKNLEALDL 61
               +  +DLS+       S     L +LT L+ L L    I  ++ G     +L +LDL
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 62  SSNYYLHGSL---EGLANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGIT 113
           S N  L G +     L + + L+ L++S N         G   L +L+ LDL    I+
Sbjct: 108 SRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TI-QGLAKLKNLEA 58
           L+N   L  L LS NY   SG++    L +L+ L+ L L    +   I Q L  +K LE 
Sbjct: 414 LSNCSELVSLHLSFNY--LSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 59  LDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQNLT---TLGLANLPNLKTLDLRD 109
           L L  N  L G +  GL+N TNL  + LS N+ LT      +  L NL  L L +
Sbjct: 471 LILDFND-LTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSN 523

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TIQG--LAKLKNLE 57
           ++    L++L++S   N   G +       L +L+ L L     T  I          L 
Sbjct: 243 ISTCTELKLLNIS--SNQFVGPI---PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 58  ALDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGIT 113
            LDLS N+  +G++     + + L+ L LS N     L    L  +  LK LDL     +
Sbjct: 298 GLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 8e-11
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 11/115 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TI-QGLAKLKNLEA 58
           L +L  L+ L L  N  +  G + +  L  +  L+ L LD   +T  I  GL+   NL  
Sbjct: 438 LGSLSKLRDLKLWLN-ML-EGEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494

Query: 59  LDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQNLT---TLGLANLPNLKTLDLRD 109
           + LS+N  L G + + +  L NL +L LS N + +      L +  +L  LDL  
Sbjct: 495 ISLSNNR-LTGEIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TI-QGLAKLKNLEALD 60
               LQ L L  N    +G +    L+N + L  L L    ++ TI   L  L  L  L 
Sbjct: 392 PKNTLQELYLQNNG--FTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 61  LSSNYYLHGSL-EGLANLTNLQVLDLSGNQNLT---TLGLANLPNLKTLDLRDCGIT 113
           L  N  L G + + L  +  L+ L L  N +LT     GL+N  NL  + L +  +T
Sbjct: 449 LWLNM-LEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 15/121 (12%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT---TIQGLAKLKNLEAL 59
               L  LDLS N+    G++      + + L+ L L     +    +  L K++ L+ L
Sbjct: 292 ACDTLTGLDLSGNH--FYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348

Query: 60  DLSSNYYLHGSL-EGLANLT-NLQVLDLSGNQNLT-----TLGLANLPNLKTLDLRDCGI 112
           DLS N    G L E L NL+ +L  LDLS N N +      L       L+ L L++ G 
Sbjct: 349 DLSFNE-FSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 113 T 113
           T
Sbjct: 407 T 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TI-QGLAKLK-NLE 57
             +   L+ L LS+N N  SG L    L  +  LK LDL     +  + + L  L  +L 
Sbjct: 314 FGSCSLLESLALSSN-NF-SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 58  ALDLSSNYYLHGSLE---GLANLTNLQVLDLSGNQNLT---TLGLANLPNLKTLDLRD 109
            LDLSSN    G +           LQ L L  N   T      L+N   L +L L  
Sbjct: 372 TLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSF 427

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TI-QGLAKLKNLEA 58
           L  L      +++    +  G  +     N  ++  LD+    ++  I + +  +  L  
Sbjct: 604 LNRLSTRNPCNIT--SRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660

Query: 59  LDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQNLT---TLGLANLPNLKTLDL 107
           L+L  N  + GS+ + + +L  L +LDLS N  L       ++ L  L  +DL
Sbjct: 661 LNLGHND-ISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TI-QGLAKLKNLEA 58
             N   +  LD+S N  + SG + +  + ++  L  L+L    I+ +I   +  L+ L  
Sbjct: 628 FDNNGSMMFLDMSYN-ML-SGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684

Query: 59  LDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQ 89
           LDLSSN  L G + + ++ LT L  +DLS N 
Sbjct: 685 LDLSSNK-LDGRIPQAMSALTMLTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 31/134 (23%)

Query: 1   LANLRYLQVLDLSANY------------------NITSGSLTRLGLANLTNLKKLDLDGC 42
           L + R L  LDL+ N                   N  +G      + N    K+    G 
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV-YIKNDGMKKECHGAGN 592

Query: 43  GITTI----QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLT-----T 93
            +       + L +L      +++S  Y   +     N  ++  LD+S N  L+      
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKE 651

Query: 94  LGLANLPNLKTLDL 107
           +G  ++P L  L+L
Sbjct: 652 IG--SMPYLFILNL 663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.4 bits (170), Expect = 3e-15
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
            + L  L+ L L    N+TS  +    L++L  L  L L    I  I+     +L  L+ 
Sbjct: 148 FSGLNSLEQLTLEKC-NLTS--IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L++S   YL           NL  L ++      +  L + +L  L+ L+L    I+TI+
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.0 bits (169), Expect = 5e-15
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 11/122 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
            A+  +L+ L+L+ N  ++  ++      NL NL+ L L    +  I       L NL  
Sbjct: 52  FASFPHLEELELNEN-IVS--AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108

Query: 59  LDLSSNY--YLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114
           LD+S N    L   +    +L NL+ L++  N    ++    + L +L+ L L  C +T+
Sbjct: 109 LDISENKIVILLDYM--FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 115 IQ 116
           I 
Sbjct: 167 IP 168

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
            ++LDL  N  I +  L +   A+  +L++L+L+   ++ ++      L NL  L L SN
Sbjct: 34  TRLLDLGKN-RIKT--LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
                 L     L+NL  LD+S N+   L      +L NLK+L++ D  +  I 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.8 bits (153), Expect = 5e-13
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEA 58
              L  L+VL++S    + + +          NL  L +  C +T +    +  L  L  
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTP---NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L+LS N         L  L  LQ + L G Q   +       L  L+ L++    +TT++
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

Query: 117 G 117
            
Sbjct: 313 E 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 9/108 (8%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
           L  L ++   N+T+  +  L + +L  L+ L+L    I+TI+G  L +L  L+ + L   
Sbjct: 226 LTSLSITHC-NLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRD 109
                       L  L+VL++SGNQ LTTL      ++ NL+TL L  
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 9e-11
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 32  TNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
           T  + LDL    I T+     A   +LE L+L+ N           NL NL+ L L  N+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 90  --NLTTLGLANLPNLKTLDLRDCGITTIQ 116
              +       L NL  LD+ +  I  + 
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILL 120

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
           + +L YL+ L+LS N  I++  +    L  L  L+++ L G  +  ++      L  L  
Sbjct: 244 VRHLVYLRFLNLSYN-PIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
           L++S N           ++ NL+ L L  N 
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 8/122 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
            + L +L+VLDL  N       LT      L N+ ++ L       +     A + +L+ 
Sbjct: 401 FSWLGHLEVLDLGLNEI--GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 59  LDLSSN--YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114
           L L       +  S      L NL +LDLS N   N+    L  L  L+ LDL+   +  
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518

Query: 115 IQ 116
           + 
Sbjct: 519 LW 520

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 39/122 (31%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEA 58
              L  L+VL+L  N  ++   L+    A  TNL +L L    I  I+     K KNL  
Sbjct: 69  CQKLPMLKVLNLQHN-ELSQ--LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ----NLTTLGLANLPNLKTLDLRDCGITT 114
           LDLS N      L     L NLQ L LS N+        L +    +LK L+L    I  
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 115 IQ 116
             
Sbjct: 186 FS 187

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEA 58
                 L  LD+  N  I+   L       L  LK L+L    ++ +  +  A   NL  
Sbjct: 45  FTRYSQLTSLDVGFN-TIS--KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L L SN              NL  LDLS N   +        L NL+ L L +  I  ++
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 6e-14
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTN--LKKLDLDGCGITTIQ--GLAKLKNL 56
              L  L+ L LS ++  +  +LT     +L +  L  L+L    I+ I+    + L +L
Sbjct: 349 FTGLINLKYLSLSNSF-TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 57  EALDLSSNYYLHGSLEG--LANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGI 112
           E LDL  N  +   L G     L N+  + LS N+   LT    A +P+L+ L LR   +
Sbjct: 408 EVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 113 TTIQGI 118
             +   
Sbjct: 467 KNVDSS 472

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 7e-13
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEA 58
            A    L  L L +N +I    +         NL  LDL   G+++       +L+NL+ 
Sbjct: 93  FAFCTNLTELHLMSN-SIQK--IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 59  LDLSSNY--YLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114
           L LS+N    L      +   ++L+ L+LS NQ    +      +  L  L L +  +  
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 115 I 115
            
Sbjct: 210 S 210

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 9e-13
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDL 61
              + VL+L+ N  +    L        + L  LD+    I+ ++     KL  L+ L+L
Sbjct: 24  PTNITVLNLTHN-QLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115
             N     S +  A  TNL  L L  N    +         NL TLDL   G+++ 
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 17/129 (13%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG----LAKLKNL 56
              L  +  + LS N       LTR   A + +L++L L    +  +         L+NL
Sbjct: 426 WRGLENIFEIYLSYN-KYLQ--LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 57  EALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ----------NLTTLGLANLPNLKTLD 106
             LDLS+N   + + + L  L  L++LDL  N                 L  L +L  L+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 107 LRDCGITTI 115
           L   G   I
Sbjct: 543 LESNGFDEI 551

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 6e-12
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 12/124 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ----GLAKLKNL 56
               + L  LDLS N  ++S          L NL++L L    I  ++     +    +L
Sbjct: 117 FVKQKNLITLDLSHN-GLSS--TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 57  EALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL-----GLANLPNLKTLDLRDCG 111
           + L+LSSN     S      +  L  L L+  Q   +L           +++ L L +  
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 112 ITTI 115
           ++T 
Sbjct: 234 LSTT 237

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 16/138 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLG------LANLTNLKKLDLDGCGITTIQG--LAK 52
           L  L  ++ L+L  ++   S SL  L          L  L+ L+++   I  I+      
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 53  LKNLEALDLSSNYYLHGSLEGLA----NLTNLQVLDLSGNQNLTTLG---LANLPNLKTL 105
           L NL+ L LS+++    +L          + L +L+L+ N+ ++ +     + L +L+ L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVL 410

Query: 106 DLRDCGITTIQGIQQFTS 123
           DL    I      Q++  
Sbjct: 411 DLGLNEIGQELTGQEWRG 428

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA----KLKNL 56
              +  L  L L+      S +         T+++ L L    ++T         K  NL
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 57  EALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRD 109
             LDLS N       +  A L  L+   L  N   +L +  L  L N++ L+L+ 
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 14/127 (11%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALD 60
               ++ L LS +  +++ S T       TNL  LDL    +  +     A L  LE   
Sbjct: 220 ANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG-----------LANLPNLKTLDLRD 109
           L  N   H     L  L N++ L+L  +    ++               L  L+ L++ D
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 110 CGITTIQ 116
             I  I+
Sbjct: 339 NDIPGIK 345

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 1   LANLRYLQVLDLSANY-----NITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKL 53
           L  L  L++LDL  N         +       L  L++L  L+L+  G   I       L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 54  KNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG----LANLPNLKTLDLRD 109
             L+ +DL  N           N  +L+ L+L  N  +T++          NL  LD+R 
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 32  TNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ- 89
            + +  D     +T +   L    N+  L+L+ N             + L  LD+  N  
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 90  -NLTTLGLANLPNLKTLDLRDCGITTI 115
             L       LP LK L+L+   ++ +
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQL 88

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.9 bits (166), Expect = 9e-15
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 12/119 (10%)

Query: 5   RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDLS 62
            Y  +LDLS N N++           LTNL  L L    +  I   A   + NL  LDLS
Sbjct: 39  SYTALLDLSHN-NLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 63  SN--YYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITTIQ 116
           SN  + L   L   ++L  L+VL L  N  +  +      ++  L+ L L    I+   
Sbjct: 97  SNHLHTLDEFL--FSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFP 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              L  L  L LS N ++    ++      + NL+ LDL    + T+     + L+ LE 
Sbjct: 60  PTRLTNLHSLLLSHN-HLNF--ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL------GLANLPNLKTLDLRDCGI 112
           L L +N+ +        ++  LQ L LS NQ ++            LP L  LDL    +
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 113 TTIQ 116
             + 
Sbjct: 176 KKLP 179

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-----GLAKLKN 55
            ++L+ L+VL L  N +I    + R    ++  L+KL L    I+           KL  
Sbjct: 108 FSDLQALEVLLLYNN-HIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164

Query: 56  LEALDLSSNYYLHGSLEGLANLTNLQV--LDLSGNQ 89
           L  LDLSSN      L  L  L       L L  N 
Sbjct: 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 9e-15
 Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ----GLAKLKNL 56
            +N   L  L +  N       L    L NL NL++LDL    I T       L  L +L
Sbjct: 321 ASNFPSLTHLSIKGNTKRLE--LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 57  EALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG----LANLPNLKTLDLRDCGI 112
           ++L+LS N  L    E       L++LDL+  + L          NL  LK L+L    +
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 113 TTIQ 116
               
Sbjct: 438 DISS 441

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEA 58
           L NL  L+ LDLS + +I +     L L NL++L+ L+L      +++     +   LE 
Sbjct: 346 LENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 59  LDLSSNYYLHGSLEG--LANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114
           LDL+    L          NL  L+VL+LS +     +      LP L+ L+L+      
Sbjct: 405 LDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 115 IQGIQ 119
               +
Sbjct: 464 GNIQK 468

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 9e-14
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 11/123 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
                 LQ LDL+A  +++       GL  L+ LKKL L       +     +   +L  
Sbjct: 274 FHCFSGLQELDLTAT-HLSELP---SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 59  LDLSSNYYLHGSLEG-LANLTNLQVLDLSGNQ----NLTTLGLANLPNLKTLDLRDCGIT 113
           L +  N        G L NL NL+ LDLS +     +   L L NL +L++L+L      
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 114 TIQ 116
           +++
Sbjct: 390 SLK 392

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDL 61
               + L+ S N  +   ++     + L NL  LDL  C I  I          L+ L L
Sbjct: 32  PNSTECLEFSFN-VLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115
           ++N  +  +   L+    L+ L        ++  + L N   L++L L    I++I
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG---LAKLKNLE 57
           L NL +LQ L+LS N    S  L          L+ LDL    +           L  L+
Sbjct: 372 LRNLSHLQSLNLSYN-EPLS--LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ-----NLTTLGLANLPNLKTLDLRDCGI 112
            L+LS +     S +    L  LQ L+L GN         T  L  L  L+ L L  C +
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 113 TTIQ 116
           ++I 
Sbjct: 489 SSID 492

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 7/120 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEA 58
            + L  L  LDL+    I    +      +   L  L L    +  +    L+  K L+ 
Sbjct: 53  FSRLINLTFLDLTRC-QIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L              L N   L+ L L  N   ++          LK LD ++  I  + 
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
             +   L  L L+AN  +    +    L+    LK L     GI++I    L   K LE+
Sbjct: 77  FQSQHRLDTLVLTAN-PLIF--MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLK--TLDLRDCGITT 114
           L L SN+     L        L+VLD   N    L+   +++L      +L+L    I  
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 115 IQ 116
           I+
Sbjct: 194 IE 195

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 9/123 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
                 L++LDL+    +      +    NL  LK L+L    +          L  L+ 
Sbjct: 396 FKECPQLELLDLAFT-RLK-VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 59  LDLSSN---YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT 113
           L+L  N            L  L  L++L LS     ++      +L  +  +DL    +T
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 114 TIQ 116
           +  
Sbjct: 514 SSS 516

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              L  LQ L+L  N+           L  L  L+ L L  C +++I       LK +  
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRD 109
           +DLS N     S+E L++L  +  L+L+ N  ++ +    L  L   +T++LR 
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA----KLKNLEA 58
           +    Q L+              L  + + +L     +      I           ++E+
Sbjct: 200 DSAVFQSLNFGGT-QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTI 115
           ++L  +Y+ + S       + LQ LDL+   +L+ L  GL  L  LK L L       +
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENL 316

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 8   QVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNY 65
           +  +           L  +      + + L+     + TIQ    ++L NL  LDL+   
Sbjct: 15  KTYNCENL------GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 66  YLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117
                 +   +   L  L L+ N    +    L+    LK L     GI++I  
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEAL 59
           + ++ L +       +         GL  + +++ ++L       I          L+ L
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114
           DL++ + L     GL  L+ L+ L LS N+  NL  +  +N P+L  L ++      
Sbjct: 284 DLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-----GLAKLKN 55
           L N + L+ L L +N +I+S  +          LK LD     I  +       L +  N
Sbjct: 125 LHNQKTLESLYLGSN-HISS--IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

Query: 56  LEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTT----LGLANLPNLKTLDLRDCG 111
           L  L+L+ N  + G   G  +    Q L+  G QNL      L  + + +L      D  
Sbjct: 182 LS-LNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 112 ITTI 115
              I
Sbjct: 240 DEDI 243

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 12/125 (9%)

Query: 1   LANLRYLQVLDLSANY--NITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLE 57
                 L+VLD   N    ++   ++   L   TNL  L+L+G  I  I+ G       +
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLS-LNLNGNDIAGIEPGAFDSAVFQ 205

Query: 58  ALDLSSNYYLHGSLEGLAN--LTNLQVLDLSGNQNLT----TLGLANLPNLKTLDLRDCG 111
           +L+      L    +GL N  + +L +       +              ++++++L+   
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 112 ITTIQ 116
              I 
Sbjct: 266 FFNIS 270

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 65.4 bits (160), Expect = 1e-14
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
             N    + LDL          +  LG A L     +D     I  + G   L+ L+ L 
Sbjct: 15  YTNAVRDRELDLRGYK---IPVIENLG-ATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLL 70

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTL-GLANLPNLKTLDLRDCGITTIQG 117
           +++N            L +L  L L+ N    L  L  LA+L +L  L +    +T  + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 25  RLGLANLTNLKKLDLDGCGITTIQGL-AKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83
                N    ++LDL G  I  I+ L A L   +A+D S N      L+G   L  L+ L
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 69

Query: 84  DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQ 119
            ++ N+   +       LP+L  L L +  +  +  + 
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD 107

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 72  EGLANLTNLQVLDLSGNQNLTTLGL-ANLPNLKTLDLRDCGITTIQGIQQFTS 123
               N    + LDL G +      L A L     +D  D  I  + G      
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 65

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              L  + V++L  N  + S  +       +  L  + +    ITTI       +L  L 
Sbjct: 141 FNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELH 198

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG 117
           L  N         L  L NL  L LS N    +    LAN P+L+ L L +  +  + G
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 11/120 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              ++ L  + ++        ++T +      +L +L LDG  IT +    L  L NL  
Sbjct: 167 FQGMKKLSYIRIADT------NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQ 116
           L LS N         LAN  +L+ L L+ N+ L  +  GLA+   ++ + L +  I+ I 
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIG 279

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 8e-13
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 25/139 (17%)

Query: 1   LANLRYLQVLDLSANYNITS---------GSLTRLGLAN----------LTNLKKLDLDG 41
             NL+ L  L L  N  I+            L RL L+              L++L +  
Sbjct: 72  FKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 130

Query: 42  CGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLA--NLTNLQVLDLSGNQNLTTLGLA 97
             IT ++      L  +  ++L +N      +E  A   +  L  + ++   N+TT+   
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG 189

Query: 98  NLPNLKTLDLRDCGITTIQ 116
             P+L  L L    IT + 
Sbjct: 190 LPPSLTELHLDGNKITKVD 208

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEAL 59
           L  L  L  L LS N +I++  +    LAN  +L++L L+   +  +  GLA  K ++ +
Sbjct: 212 LKGLNNLAKLGLSFN-SISA--VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268

Query: 60  DLSSNY------YLHGSLEGLANLTNLQVLDLSGNQ----NLTTLGLANLPNLKTLDLRD 109
            L +N                    +   + L  N      +       +     + L +
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 35/138 (25%), Positives = 47/138 (34%), Gaps = 32/138 (23%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
             +LDL  N  IT   +      NL NL  L L    I+ I     A L  LE L LS N
Sbjct: 54  TALLDLQNN-KITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 65  Y---------------YLHG------SLEGLANLTNLQVLDLSGNQNLTTLGL-----AN 98
                            +H              L  + V++L  N  L + G+       
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQG 169

Query: 99  LPNLKTLDLRDCGITTIQ 116
           +  L  + + D  ITTI 
Sbjct: 170 MKKLSYIRIADTNITTIP 187

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
           L  L L  N  IT   +    L  L NL KL L    I+ +    LA   +L  L L++N
Sbjct: 194 LTELHLDGN-KITK--VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---------LANLPNLKTLDLRD 109
             L     GLA+   +QV+ L  N  ++ +G              +   + L  
Sbjct: 251 K-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 5e-09
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 32  TNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
            +   LDL    IT I+      LKNL  L L +N     S    A L  L+ L LS NQ
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 90  NLTTLGLANLPNLKTLDLRDCGITTIQ 116
            L  L       L+ L + +  IT ++
Sbjct: 112 -LKELPEKMPKTLQELRVHENEITKVR 137

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 18/100 (18%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRL--GLANLTNLKKLDLDGCGITTIQG--------L 50
           LAN  +L+ L L+ N       L ++  GLA+   ++ + L    I+ I           
Sbjct: 236 LANTPHLRELHLNNN------KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 51  AKLKNLEALDLSSNYYLHGSLEGLA--NLTNLQVLDLSGN 88
            K  +   + L SN   +  ++      +     + L   
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 33  NLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ-- 89
           +L+ +     G+  + + L    +   LDL +N           NL NL  L L  N+  
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 90  NLTTLGLANLPNLKTLDLRDCGITTIQ 116
            ++    A L  L+ L L    +  + 
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELP 116

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
             +   ++ LDLS N  ++   ++   LA  T L+ L+L    +     L  L  L  LD
Sbjct: 30  RQSAWNVKELDLSGN-PLSQ--ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLD 86

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L++N      ++ L    +++ L  + N  ++ +  +     K + L +  IT ++
Sbjct: 87  LNNN-----YVQELLVGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLR 136

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
                 +Q LDL  N  I + +   L  A+   L+ L+L    I  ++G      L+ LD
Sbjct: 140 EGCRSRVQYLDLKLN-EIDTVNFAEL-AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTI 115
           LSSN  L        +   +  + L  N+ L  +   L    NL+  DLR  G    
Sbjct: 198 LSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 10/115 (8%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALD 60
           N    ++  ++ + ++           +  N+K+LDL G  ++ I    LA    LE L+
Sbjct: 8   NGNRYKIEKVTDS-SLK--QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
           LSSN         L +L+ L+ LDL+ N  +  L     P+++TL   +  I+ +
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELL--VGPSIETLHAANNNISRV 114

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 7e-12
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG---LAKLKNLEAL 59
             +  + + L+ N  IT   L  L     + ++ LDL    I T+      A    LE L
Sbjct: 118 RGQGKKNIYLANN-KITM--LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQG 117
           +L  N +++  ++G      L+ LDLS N+ L  +     +   +  + LR+  +  I+ 
Sbjct: 175 NLQYN-FIY-DVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEK 231

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEA 58
           L     ++ L  + N      +++R+  +     K + L    IT ++ L       ++ 
Sbjct: 95  LLVGPSIETLHAANN------NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 59  LDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRDCGITTI 115
           LDL  N     +   L A+   L+ L+L  N  +  + G      LKTLDL    +  +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFM 206

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 30  NLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
           N    K   +    +            N++ LDLS N     S   LA  T L++L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 88  NQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
           N    TL L +L  L+TLDL +  +  + 
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQELL 96

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 53  LKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDC 110
               +   ++ +           +  N++ LDLSGN    ++   LA    L+ L+L   
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 111 GITTIQGIQQFTS 123
            +     ++  ++
Sbjct: 69  VLYETLDLESLST 81

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 66.4 bits (162), Expect = 3e-14
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 9/119 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC--GIT--TIQGLAK-LKN 55
           L++   L  L+LS  ++ T   +          + +L+L G    +    +  L +   N
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223

Query: 56  LEALDLSSNYYLH-GSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDC 110
           L  LDLS +  L     +    L  LQ L LS   ++       L  +P LKTL +   
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 12/134 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKL-----KN 55
           LA    L  L+LS     +  +L  L L++ + L +L+L  C   T + +        + 
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196

Query: 56  LEALDLSSNYYL--HGSLEGLA-NLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRD 109
           +  L+LS          L  L     NL  LDLS +  L          L  L+ L L  
Sbjct: 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

Query: 110 CGITTIQGIQQFTS 123
           C     + + +   
Sbjct: 257 CYDIIPETLLELGE 270

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 5e-10
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 5   RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG---LAKLKNLEALDL 61
           R L    ++     +          +   ++ +DL    I        L++   L+ L L
Sbjct: 66  RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLA----NLPNLKTLDLRDCGITTIQG 117
                    +  LA  +NL  L+LSG    +   L     +   L  L+L  C   T + 
Sbjct: 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185

Query: 118 IQQFTS 123
           +Q   +
Sbjct: 186 VQVAVA 191

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 5e-10
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 15/135 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKL----KNL 56
           L+    LQ L L     ++   +  L  A  +NL +L+L GC   +   L  L      L
Sbjct: 114 LSQCSKLQNLSLE-GLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 57  EALDLSSNYYL--HGSLEGLA-NLTNLQVLDLSG-NQNLTTLGLA----NLPNLKTLDLR 108
           + L+LS  +          +A     +  L+LSG  +NL    L+      PNL  LDL 
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230

Query: 109 DCGITTIQGIQQFTS 123
           D  +      Q+F  
Sbjct: 231 DSVMLKNDCFQEFFQ 245

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLG-----LANLTNLKKLDLDGCGITTI---QGLAK 52
           L  L  +Q+++++ N  I+   L               ++ + +    + T      L K
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 53  LKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRD 109
           +K L  L+   N  L G L    +   L  L+L+ NQ +T +          ++ L    
Sbjct: 329 MKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAH 386

Query: 110 CGITTI 115
             +  I
Sbjct: 387 NKLKYI 392

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 10/122 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEAL 59
             N   L  +DL  N  +T  S        L  L  +DL     +           L+  
Sbjct: 484 FKNTYLLTSIDLRFN-KLTKLSDD-FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541

Query: 60  DLSSNYYLHGSL------EGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGIT 113
            + +     G+       EG+    +L  L +  N  +  +     PN+  LD++D    
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKITPNISVLDIKDNPNI 600

Query: 114 TI 115
           +I
Sbjct: 601 SI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 20/133 (15%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLG-----LANLTNLKKLDLDGCGITTI--QGLAKL 53
             ++  +  +D S N  I S                 N+  ++L    I+    +  +  
Sbjct: 398 AKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 54  KNLEALDLSSN-------YYLHGSLEGLANLTNLQVLDLSGNQNLTTL----GLANLPNL 102
             L +++L  N         L    E   N   L  +DL  N+ LT L        LP L
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYL 515

Query: 103 KTLDLRDCGITTI 115
             +DL     +  
Sbjct: 516 VGIDLSYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 10/123 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQGLAKLKNLEAL 59
                 +Q++ +  N N+ +  +    L  +  L  L+     +   +        L +L
Sbjct: 301 APVGEKIQIIYIGYN-NLKTFPVET-SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASL 358

Query: 60  DLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTL----GLANLPNLKTLDLRDCGITT 114
           +L+ N  +             ++ L  + N+ L  +       ++  +  +D     I +
Sbjct: 359 NLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 115 IQG 117
           + G
Sbjct: 417 VDG 419

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 18/131 (13%)

Query: 1   LANLRYLQVLDLSANYNITS-----GSLTRLGLANLTNLKKLDLDGCGITTIQ---GLAK 52
            +    L  ++L  N  +T               N   L  +DL    +T +        
Sbjct: 453 FSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 53  LKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTT--------LGLANLPNLKT 104
           L  L  +DLS N           N + L+   +   ++            G+   P+L  
Sbjct: 512 LPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 105 LDLRDCGITTI 115
           L +    I  +
Sbjct: 571 LQIGSNDIRKV 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEA 58
           L  ++ L +L+   N  +           +   L  L+L    IT I        + +E 
Sbjct: 326 LQKMKKLGMLECLYN-QLEG---KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 59  LDLSSNYYLHG--SLEGLANLTNLQVLDLSGNQ-------NLTTL--GLANLPNLKTLDL 107
           L  + N  L    ++    +++ +  +D S N+       N   L        N+ +++L
Sbjct: 382 LSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 108 RDCGITTI 115
            +  I+  
Sbjct: 441 SNNQISKF 448

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 13/125 (10%), Positives = 39/125 (31%), Gaps = 16/125 (12%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +  L  L+   +  +  +           N    ++        T       LK+L  ++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK------TEDLKWDNLKDLTDVE 255

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTT----------LGLANLPNLKTLDLRDC 110
           + +   L      L  L  +Q+++++ N+ ++                   ++ + +   
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 111 GITTI 115
            + T 
Sbjct: 316 NLKTF 320

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 9/118 (7%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
                  +   +N NIT  S     +  LT L++  +              +  E  +  
Sbjct: 181 ITLKDTQIGQLSN-NITFVSKA---VMRLTKLRQFYMGNSPFV---AENICEAWENENSE 233

Query: 63  SNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQGI 118
                        NL +L  +++    NLT L   L  LP ++ +++      + + +
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 4/93 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRL---GLANLTNLKKLDLDGCGITTIQGLAKLKNLE 57
             N   L+   +    +       R    G+    +L +L +    I  +       N+ 
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-TPNIS 590

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQN 90
            LD+  N  +   L  +       +  L  ++ 
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 64.0 bits (156), Expect = 4e-14
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
            A   NL+ L L   G+ ++  L KL  L+ L+LS N    G       L NL  L+LSG
Sbjct: 45  TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 88  NQ--NLTTLG-LANLPNLKTLDLRDCGITTIQG 117
           N+  +++TL  L  L  LK+LDL +C +T +  
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 26  LGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82
           L       +++L LD C     +     A+  NLE L L +   +  S+  L  L  L+ 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKK 75

Query: 83  LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQ 119
           L+LS N+      +    LPNL  L+L    +  I  ++
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNL 102
           I           +  L L +     G +EGL A   NL+ L L     ++   L  LP L
Sbjct: 14  IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKL 73

Query: 103 KTLDLRDCGITTIQGI 118
           K L+L +  I     +
Sbjct: 74  KKLELSENRIFGGLDM 89

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 4e-14
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG----LAKLKNL 56
             +L+ L+ LDLS N  +              +L+ L L    + ++Q     L  LKNL
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 57  EALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
            +LD+S N   H   +       ++ L+LS    +  +       L+ LD+ +  + + 
Sbjct: 390 TSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSF 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 5e-12
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 9/122 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEA 58
           L     LQVL L ++  I +  +      +L +L+ LDL    ++++       L +L+ 
Sbjct: 46  LRACANLQVLILKSS-RINT--IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 59  LDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCGITT 114
           L+L  N Y    +  L  NLTNLQ L +   +  + +     A L +L  L+++   +  
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 115 IQ 116
            Q
Sbjct: 163 YQ 164

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
           ++ LDLS N  IT   +    L    NL+ L L    I TI+G     L +LE LDLS N
Sbjct: 28  MKSLDLSFN-KITY--IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQNLTTLG----LANLPNLKTLDL 107
           +    S      L++L+ L+L GN    TLG      NL NL+TL +
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRI 130

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRL--GLANLTNLKKLDLDGCGITTIQGLAKLKNLEA 58
           L  L+ L  LD+S N      +   +         ++ L+L   GI  ++     + LE 
Sbjct: 383 LLTLKNLTSLDISRN------TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEV 435

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRDCGITTI 115
           LD+S+N     S      L  LQ L +S N+ L TL   +  P L  + +    + ++
Sbjct: 436 LDVSNNNLDSFS----LFLPRLQELYISRNK-LKTLPDASLFPVLLVMKISRNQLKSV 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG-----LAKLKN 55
            + L  ++ + +  +  +    +      +L +L+ LDL    +               +
Sbjct: 306 YSLLEKVKRITVENS-KVF--LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 56  LEALDLSSNY--YLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCG 111
           L+ L LS N+   +  + E L  L NL  LD+S N     +         ++ L+L   G
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG 421

Query: 112 ITTI 115
           I  +
Sbjct: 422 IRVV 425

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 8e-10
 Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
             +     + D + + +     L ++       +++L +    +        + L+ ++ 
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKV---ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ-----NLTTLGLANLPNLKTLDLRDCGIT 113
           + + ++           +L +L+ LDLS N         +      P+L+TL L    + 
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 114 TIQ 116
           ++Q
Sbjct: 375 SMQ 377

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
                 ++ L+LS+        +  +       L+ LD+    + +      L  L+ L 
Sbjct: 406 CQWPEKMRFLNLSST------GIRVVKTCIPQTLEVLDVSNNNLDSFS--LFLPRLQELY 457

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRD 109
           +S N  L  +L   +    L V+ +S NQ L ++       L +L+ + L  
Sbjct: 458 ISRNK-LK-TLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 10/120 (8%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSN 64
             V D  +       S T +       +K LDL    IT I    L    NL+ L L S+
Sbjct: 7   SGVCDGRSR------SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
                  +   +L +L+ LDLS N   +L++     L +LK L+L      T+     F 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSS 63
            + L+VLD+S N      +L       L  L++L +    + T+   +    L  + +S 
Sbjct: 430 PQTLEVLDVSNN------NLDSFS-LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISR 482

Query: 64  NYYLHGSLEGLANLTNLQVLDLSGN 88
           N            LT+LQ + L  N
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 5/109 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEA 58
            A L  L  L++ A  ++ +       L ++ ++  L L       +  +    L ++  
Sbjct: 144 FAGLTSLNELEIKAL-SLRN--YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
           L+L            L        +     +       +    LK L  
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 5   RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDLS 62
              + +DLS N  +    L     +N + L+ LDL  C I TI+  A   L +L  L L+
Sbjct: 32  SSTKNIDLSFN-PLKI--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 63  SNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
            N     S    + LT+L+ L     +  +L +  +  L  LK L++    I + +    
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 121 FTS 123
           F++
Sbjct: 149 FSN 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI---QGLAKLKNLEAL 59
               L+ LDLS N  I   +        L  L+ LD     +  +        L+ L  L
Sbjct: 374 GTNSLRHLDLSFNGAIIMSA----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITTI 115
           D+S              LT+L  L ++GN           AN  NL  LDL  C +  I
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +  L  + + +    Y     S   +    L N+  + L G  I  ++ + K    ++L 
Sbjct: 255 MEGLCDVTIDEFRLTYT-NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS 313

Query: 61  LSSNYYLHGSLEGL--ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
           +         L+     +L  L+ L L+ N+   +     LP+L  LDL    ++   
Sbjct: 314 IIRC-----QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEA 58
            +N   LQ LDLS    I   ++       L +L  L L G  I +      + L +LE 
Sbjct: 52  FSNFSELQWLDLSRC-EIE--TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGL----ANLPNLKTLDLRDCGITT 114
           L              +  L  L+ L+++ N  + +  L    +NL NL  +DL    I T
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 115 IQ 116
           I 
Sbjct: 168 IT 169

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 8/126 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              L  L  L ++ N +    +L+ +  AN TNL  LDL  C +  I       L  L+ 
Sbjct: 444 FLGLTSLNTLKMAGN-SFKDNTLSNV-FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITTI 115
           L++S N  L         L +L  LD S N+ + T          +L   +L +  +  I
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACI 560

Query: 116 QGIQQF 121
              Q+F
Sbjct: 561 CEHQKF 566

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 9/126 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +      Q L +          L +    +L  LK L L     +       L +L  LD
Sbjct: 303 VPKHFKWQSLSIIRC------QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356

Query: 61  LSSN--YYLHGSLEGLANLTNLQVLDLSGNQ-NLTTLGLANLPNLKTLDLRDCGITTIQG 117
           LS N   +            +L+ LDLS N   + +     L  L+ LD +   +  +  
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 118 IQQFTS 123
              F S
Sbjct: 417 FSAFLS 422

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 8e-12
 Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI---QGLAKLKNLE 57
             +L  L  LD+S   N             LT+L  L + G            A   NL 
Sbjct: 420 FLSLEKLLYLDISYT-NTK--IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115
            LDLS       S      L  LQ+L++S N    L +     L +L TLD     I T 
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 116 Q 116
           +
Sbjct: 537 K 537

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 14/121 (11%)

Query: 6   YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-----------TIQGLAKLK 54
            L  L L  N+N ++  + +  L NL  L    L                  ++GL  + 
Sbjct: 205 KLHELTLRGNFNSSN--IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 55  NLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITT 114
             E   L+        +     L N+  + L+G        +      ++L +  C +  
Sbjct: 263 IDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 115 I 115
            
Sbjct: 322 F 322

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 26/130 (20%), Positives = 38/130 (29%), Gaps = 10/130 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKK-----LDLDGCGITTIQ--GLAKL 53
           L NL  L V  L         +L     + +  L         L      +        L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 54  KNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGIT 113
            N+ A+ L+        LE +      Q L +   Q L      +LP LK+L L     +
Sbjct: 285 ANVSAMSLAGVS--IKYLEDVPKHFKWQSLSIIRCQ-LKQFPTLDLPFLKSLTLTMNKGS 341

Query: 114 TIQGIQQFTS 123
                    S
Sbjct: 342 ISFKKVALPS 351

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-----QGLAKLK- 54
           +  L  L+ L+++ N  I S  L     +NLTNL  +DL    I TI     Q L +   
Sbjct: 124 IGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 55  NLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCG 111
              +LD+S N  +    +       L  L L GN N + +    L NL  L    L    
Sbjct: 182 VNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 112 ITTIQGIQQF 121
               + ++ F
Sbjct: 241 FKDERNLEIF 250

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.0 bits (151), Expect = 1e-13
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
                  L+ L     G+T+I  L KL  L+ L+LS N    G         NL  L+LS
Sbjct: 37  LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 87  GNQ--NLTTLG-LANLPNLKTLDLRDCGITTIQG 117
           GN+  +L+T+  L  L NLK+LDL +C +T +  
Sbjct: 97  GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 1e-10
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 26  LGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV 82
           L     +++K+L LD       +      + + LE L   +      S+  L  L  L+ 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LTSIANLPKLNKLKK 68

Query: 83  LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQ 119
           L+LS N+      +     PNL  L+L    I  +  I+
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 8e-06
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTL-GLANLPN 101
           I          +++ L L ++    G LEGL      L+ L       LT++  L  L  
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNK 65

Query: 102 LKTLDLRDCGITTIQGI 118
           LK L+L D  ++    +
Sbjct: 66  LKKLELSDNRVSGGLEV 82

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSN 64
            + LDLS N  +    L      +   L+ LDL  C I TI       L +L  L L+ N
Sbjct: 30  TKNLDLSFN-PLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
                +L   + L++LQ L        +L    + +L  LK L++    I + +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 12/125 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
             +L +L  L L+ N  I S  L     + L++L+KL      + +++   +  LK L+ 
Sbjct: 72  YQSLSHLSTLILTGN-PIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 59  LDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLK----TLDLRDCG 111
           L+++ N      L E  +NLTNL+ LDLS N+  ++    L  L  +     +LDL    
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 112 ITTIQ 116
           +  IQ
Sbjct: 189 MNFIQ 193

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 7e-12
 Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI---QGLAKLKNLE 57
                 L+ LDLS N  IT  S        L  L+ LD     +  +        L+NL 
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 58  ALDLSSNYYLHGSLEG-LANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGIT 113
            LD+S  +    +  G    L++L+VL ++GN    N        L NL  LDL  C + 
Sbjct: 425 YLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 114 TI 115
            +
Sbjct: 484 QL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 7e-12
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 23/138 (16%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L  L  L + +    Y              LTN+    L    I  ++  +     + L+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 61  LSSNYY-------------------LHGSLEGLANLTNLQVLDLSGNQN----LTTLGLA 97
           L +  +                     G+     +L +L+ LDLS N        +    
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 98  NLPNLKTLDLRDCGITTI 115
              +LK LDL   G+ T+
Sbjct: 371 GTTSLKYLDLSFNGVITM 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 9e-12
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEA 58
             +   LQVLDLS    I   ++      +L++L  L L G  I ++     + L +L+ 
Sbjct: 48  FFSFPELQVLDLSRC-EIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGL----ANLPNLKTLDLRDCGITT 114
           L              + +L  L+ L+++ N  + +  L    +NL NL+ LDL    I +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 115 I 115
           I
Sbjct: 164 I 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 5e-11
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEA 58
              L  L+ LD   + N+   S   +   +L NL  LD+               L +LE 
Sbjct: 392 FLGLEQLEHLDFQHS-NLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 59  LDLSSNYYLHGSLEG-LANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115
           L ++ N +    L      L NL  LDLS  Q   L+     +L +L+ L++      ++
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 116 Q 116
            
Sbjct: 510 D 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 6e-11
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
            +     Q L+L            +     L +LK+L               L +LE LD
Sbjct: 300 FSYNFGWQHLELVNC------KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 61  LSSN--YYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQ 116
           LS N   +     +     T+L+ LDLS N  + T+      L  L+ LD +   +  + 
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 117 GIQQFTS 123
               F S
Sbjct: 413 EFSVFLS 419

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 8/120 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI---QGLAKLKNLE 57
             +LR L  LD+S   +             L++L+ L + G             +L+NL 
Sbjct: 417 FLSLRNLIYLDISHT-HTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI 115
            LDLS       S     +L++LQVL++S N   +L T     L +L+ LD     I T 
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 32  TNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
            + K LDL    +  +          L+ LDLS             +L++L  L L+GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 90  --NLTTLGLANLPNLKTLDLRDCGITTIQ 116
             +L     + L +L+ L   +  + +++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLE 116

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEA 58
              L  L+VL ++ N +     L  +    L NL  LDL  C +  +       L +L+ 
Sbjct: 441 FNGLSSLEVLKMAGN-SFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANL----PNLKTLDLRD 109
           L++S N +          L +LQVLD S N  + T     L     +L  L+L  
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 13/120 (10%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAK-----LKNLEALDL 61
           L  L L    N  S ++ +  +  L  L+   L          L K     L+ L  L +
Sbjct: 202 LHKLTLR--NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 62  SSNYYLHGSLEG------LANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
                 +              LTN+    L           +     + L+L +C     
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
              LR L  LDLS    +    L+     +L++L+ L++      ++       L +L+ 
Sbjct: 466 FTELRNLTFLDLSQC-QLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 59  LDLSSNYYLHGSLEGL--ANLTNLQVLDLSGNQ 89
           LD S N+ +  S +       ++L  L+L+ N 
Sbjct: 523 LDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 4e-13
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 10/122 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEAL 59
             N   L  +DL  N  +TS S        L  L  +D+     ++          L+A 
Sbjct: 724 YKNTYLLTTIDLRFN-KLTSLSDD-FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

Query: 60  DLSSNYYLHGSL------EGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGIT 113
            +       G+        G+    +L  L +  N  +  +     P L  LD+ D    
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLTPQLYILDIADNPNI 840

Query: 114 TI 115
           +I
Sbjct: 841 SI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 6e-13
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 7/120 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
                 +Q+  +  N N+         L  +  L  LD     +  ++       L  L 
Sbjct: 544 EDTGPKIQIFYMGYN-NLEE-FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLK 601

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL----GLANLPNLKTLDLRDCGITTIQ 116
           L  N       +  A    ++ L  S N+ L  +       ++  + ++D     I +  
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 15/135 (11%)

Query: 1   LANLRYLQVLDLSAN----YNITSGSLTRL--GLANLTNLKKLDLDGCGITTI---QGLA 51
           L +L  LQ L+++ N            TRL         ++   +    +        L 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 52  KLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLR 108
           K+  L  LD   N  +   LE       L  L L  NQ +  +     A    ++ L   
Sbjct: 571 KMVKLGLLDCVHNK-VR-HLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFS 627

Query: 109 DCGITTIQGIQQFTS 123
              +  I  I    S
Sbjct: 628 HNKLKYIPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 16/130 (12%)

Query: 1   LANLRYLQVLDLSANY--NITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNL 56
             ++  +  +D S N   +        +      N   + L    I     +  A    +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 57  EALDLSSNY-------YLHGSLEGLANLTNLQVLDLSGNQNLTTL----GLANLPNLKTL 105
             + LS+N         L        N   L  +DL  N+ LT+L        LP L  +
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNM 758

Query: 106 DLRDCGITTI 115
           D+     ++ 
Sbjct: 759 DVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 6e-11
 Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 32/154 (20%)

Query: 1   LANLRYLQVLDLSAN----------------YNITSGSLTRLGLANLTNLKKLDLDGCGI 44
           +  L  LQ++  + +                          L  +NL +L  ++L  C  
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 45  TTI--QGLAKLKNLEALDLSSN---------YYLHGSLEGLANLTNLQVLDLSGNQNLTT 93
            T     L  L  L++L+++ N                +       +Q+  +  N  L  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEE 562

Query: 94  L----GLANLPNLKTLDLRDCGITTIQGIQQFTS 123
                 L  +  L  LD     +  ++       
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK 596

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 8/120 (6%)

Query: 1   LANLRYLQVLDLSANY-NITSGSLTRL--GLANLTNLKKLDLDGCGITTIQGLAKLKNLE 57
           +  ++    + L        +  +T +   +  LT L+ +       T         + E
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFT---YDNIAVDWE 470

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTI 115
             +              +NL +L  ++L    N+T L   L +LP L++L++      + 
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRL---GLANLTNLKKLDLDGCGITTIQGLAKLKNLE 57
             N   L+   +    +     + R    G+    +L +L +    I  +        L 
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD-EKLTPQLY 830

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQN 90
            LD++ N  +   +  +       +  L  ++ 
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 22/164 (13%), Positives = 43/164 (26%), Gaps = 49/164 (29%)

Query: 1   LANLRYLQVLDLSANY----------------------NITSGSLTRLGLANLTNLKKLD 38
           +  L  L+VL    +                       +       ++ L     L   D
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 39  LDGCGITTIQGLAKLKNLEALDLSSNYY------LHGSLEGLANLTNLQVLDLSGNQ--- 89
           L    I     +  +K    + L           +    + +  LT LQ++  + +    
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 90  ------------------NLTTLGLANLPNLKTLDLRDCGITTI 115
                                 L  +NL +L  ++L +C   T 
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 6/115 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLE 57
           L N   +  L L+              +  LT LK L       T      G  +L    
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDA---IGQLTELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGI 112
           + +      +H     L     L + DL  +       +  +     + L+D  I
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 5/108 (4%)

Query: 21  GSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT 78
           G    + L N   +  L L G G        + +L  L+ L   ++              
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 79  NLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
              + +   ++   +   + L     L   DL    I     ++    
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEAL 59
             +L  L+ LDLS N  ++            T+LK LDL   G+ T+      L+ LE L
Sbjct: 343 EVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 60  DLSSNYYLH-GSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT 113
           D   +            +L NL  LD+S              L +L+ L +      
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.4 bits (152), Expect = 9e-13
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 7/121 (5%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
            + LDLS N  +    L      +   L+ LDL  C I TI+      L +L  L L+ N
Sbjct: 30  TKNLDLSFN-PLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
                +L   + L++LQ L        +L    + +L  LK L++    I + +  + F+
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 123 S 123
           +
Sbjct: 147 N 147

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEA 58
             +   LQVLDLS    I   ++      +L++L  L L G  I ++     + L +L+ 
Sbjct: 48  FFSFPELQVLDLSRC-EIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGL----ANLPNLKTLDLRDCGITT 114
           L              + +L  L+ L+++ N  + +  L    +NL NL+ LDL    I +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 115 IQ 116
           I 
Sbjct: 164 IY 165

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
             +L +L  L L+ N      SL     + L++L+KL      + +++   +  LK L+ 
Sbjct: 72  YQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 59  LDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLK----TLDLRDCG 111
           L+++ N      L E  +NLTNL+ LDLS N+  ++    L  L  +     +LDL    
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 112 ITTIQ 116
           +  IQ
Sbjct: 189 MNFIQ 193

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L  L  L + +    Y              LTN+    L    I  ++  +     + L+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
           L +  +          L +L+ L  + N+        +LP+L+ LDL   G++  
Sbjct: 311 LVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 6e-10
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 1   LANLRYLQVLDLSANY--NITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNL 56
              L  L+ LD   +    ++  S+      +L NL  LD+               L +L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 57  EALDLSSNYYLHGSLEG--LANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGI 112
           E L ++ N     +        L NL  LDLS  Q   L+     +L +L+ L++    +
Sbjct: 448 EVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 113 TTI 115
            ++
Sbjct: 507 KSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI---QGLAKLKNLE 57
             +LR L  LD+S   +             L++L+ L + G             +L+NL 
Sbjct: 417 FLSLRNLIYLDISHT-HTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRD 109
            LDLS       S     +L++LQVL+++ NQ L ++       L +L+ + L  
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 11/127 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
            +     Q L+L            +     L +LK+L               L +LE LD
Sbjct: 300 FSYNFGWQHLELVNC------KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 61  LSSN--YYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQ 116
           LS N   +     +     T+L+ LDLS N  + T+      L  L+ LD +   +  + 
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 117 GIQQFTS 123
               F S
Sbjct: 413 EFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 32  TNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
            + K LDL    +  +          L+ LDLS             +L++L  L L+GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 90  --NLTTLGLANLPNLKTLDLRDCGITTIQG 117
             +L     + L +L+ L   +  + +++ 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLEN 117

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-----QGLAKLKN 55
           + +L+ L+ L+++ N  I S  L     +NLTNL+ LDL    I +I     + L ++  
Sbjct: 120 IGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 56  LEA-LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITT 114
           L   LDLS N            +  L  L L  N +   +    +  L  L++    +  
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 115 IQGIQQFTS 123
            +       
Sbjct: 237 FRNEGNLEK 245

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
             +   ++ LDLS N  ++   ++   LA  T L+ L+L    +     L  L  L  LD
Sbjct: 30  RQSAWNVKELDLSGN-PLSQ--ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLD 86

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L++N      ++ L    +++ L  + N  ++ +  +     K + L +  IT ++
Sbjct: 87  LNNN-----YVQELLVGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLR 136

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 4e-11
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
                 +Q LDL  N  I + +   L  A+   L+ L+L    I  ++G      L+ LD
Sbjct: 140 EGCRSRVQYLDLKLN-EIDTVNFAEL-AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTI 115
           LSSN  L        +   +  + L  N+ L  +   L    NL+  DLR  G    
Sbjct: 198 LSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCG 252

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 7e-10
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALD 60
           N    ++  ++ + ++           +  N+K+LDL G  ++ I    LA    LE L+
Sbjct: 8   NGNRYKIEKVTDS-SLK--QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
           LSSN         L +L+ L+ LDL+ N  +  L     P+++TL   +  I+ + 
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELL--VGPSIETLHAANNNISRVS 115

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEA 58
           L     ++ L  + N      +++R+  +     K + L    IT ++ L       ++ 
Sbjct: 95  LLVGPSIETLHAANN------NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 59  LDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRDCGITTI 115
           LDL  N     +   L A+   L+ L+L  N  +  + G      LKTLDL    +  +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFM 206

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG---LAKLKNLEAL 59
             +  + + L+ N  IT   L  L     + ++ LDL    I T+      A    LE L
Sbjct: 118 RGQGKKNIYLANN-KITM--LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQG 117
           +L  N+     ++G      L+ LDLS N+ L  +     +   +  + LR+  +  I+ 
Sbjct: 175 NLQYNFI--YDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEK 231

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 30  NLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
           N    K   +    +            N++ LDLS N     S   LA  T L++L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 88  NQNLTTLGLANLPNLKTLDLRDCGITTIQG 117
           N    TL L +L  L+TLDL +  +  +  
Sbjct: 68  NVLYETLDLESLSTLRTLDLNNNYVQELLV 97

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 53  LKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDC 110
               +   ++ +           +  N++ LDLSGN    ++   LA    L+ L+L   
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 111 GITTIQGIQQFTS 123
            +     ++  ++
Sbjct: 69  VLYETLDLESLST 81

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
           L + R +++L+L+    I    +     A    ++KL +    I  +       +  L  
Sbjct: 65  LDSFRQVELLNLNDL-QIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L L  N           N   L  L +S N    +         +L+ L L    +T + 
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
            A    +Q L +  N  I    L      N+  L  L L+   ++++          L  
Sbjct: 89  FAYAHTIQKLYMGFN-AIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQG 117
           L +S+N       +     T+LQ L LS N+ LT + L+ +P+L   ++    ++T+  
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAI 203

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           LA    ++ LD S N      S+  +       L  L L    +T    L     L  +D
Sbjct: 201 LAIPIAVEELDASHN------SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVD 254

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQ 116
           LS N            +  L+ L +S N+ L  L      +P LK LDL    +  ++
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVE 311

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG-LAKLKNLEAL 59
           L N   L  +DLS N  +    +       +  L++L +    +  +      +  L+ L
Sbjct: 244 LLNYPGLVEVDLSYN-ELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRD 109
           DLS N+ L            L+ L L  N  + TL L+    LK L L  
Sbjct: 301 DLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 11/117 (9%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDL 61
              L +L L  N    +  L      N   L ++DL    +  I      K++ LE L +
Sbjct: 225 NVELTILKLQHNNLTDTAWL-----LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQ 116
           S+N  L         +  L+VLDLS N  L  +         L+ L L    I T++
Sbjct: 280 SNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 6e-10
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
                 LQ L LS+N       LT + L+ + +L   ++    ++T   LA    +E LD
Sbjct: 161 FQATTSLQNLQLSSN------RLTHVDLSLIPSLFHANVSYNLLST---LAIPIAVEELD 211

Query: 61  LSSNY--YLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
            S N    + G +        L +L L  N    T  L N P L  +DL    +  I 
Sbjct: 212 ASHNSINVVRGPV-----NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 264

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEAL 59
              ++ L+ L +S N  + + +L       +  LK LDL    +  ++    +   LE L
Sbjct: 268 FVKMQRLERLYISNN-RLVALNLY---GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323

Query: 60  DLSSNYYLHGSLEGL--ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRD 109
            L  N     S+  L  +    L+ L LS N        A   N+    + D
Sbjct: 324 YLDHN-----SIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 370

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 53  LKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDC 110
           L N + +   ++         L +   +++L+L+  Q   + T   A    ++ L +   
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 111 GITTIQ 116
            I  + 
Sbjct: 104 AIRYLP 109

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 21/128 (16%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRL--GLANLTNLKKLDLDGCGITTI-QGLAKLKNLEA 58
           A       L+L +        L +       L++L+ + +D  G+  +   + +   LE 
Sbjct: 78  ATQPGRVALELRSV------PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLET 131

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL-----------GLANLPNLKTLDL 107
           L L+ N  L      +A+L  L+ L +     LT L               L NL++L L
Sbjct: 132 LTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 108 RDCGITTI 115
              GI ++
Sbjct: 191 EWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRL--GLANLTNLKKLDLDGC-GITTI-QGLAKLKNL 56
           +ANL+ L+ L +  +       L+ L   + +L  L++LDL GC  +            L
Sbjct: 202 IANLQNLKSLKIRNS------PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 57  EALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITT 114
           + L L     L      +  LT L+ LDL G  NL+ L   +A LP    + +       
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 115 I 115
           +
Sbjct: 316 L 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEAL 59
            AN    Q+   +      +  L  L  A       L+L    +        +L +L+ +
Sbjct: 52  QANSNNPQIETRTGRALKATADL--LEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHM 109

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDC 110
            + +   L    + +     L+ L L+ N  L  L   +A+L  L+ L +R C
Sbjct: 110 TIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 31/129 (24%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRL--GLANLTNLKKLDLDGC-----------GITTI 47
           +     L+ L L+ N       L  L   +A+L  L++L +  C                
Sbjct: 123 MQQFAGLETLTLARN------PLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 48  QGLAKLKNLEALDLSSNYYLHGSLEGL----ANLTNLQVLDLSGNQNLTTL--GLANLPN 101
                L NL++L L         +  L    ANL NL+ L +  +  L+ L   + +LP 
Sbjct: 177 GEHQGLVNLQSLRLEWT-----GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPK 230

Query: 102 LKTLDLRDC 110
           L+ LDLR C
Sbjct: 231 LEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 9/91 (9%)

Query: 30  NLTNLKKLDLDGCG--ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
           + +  + L   G          L++ +     D +       S    AN  N Q+   +G
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN----RWHSAWRQANSNNPQIETRTG 65

Query: 88  NQN---LTTLGLANLPNLKTLDLRDCGITTI 115
                    L  A  P    L+LR   +   
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQF 96

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 11/114 (9%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
           L  L +S         LT +       L +L LD   I  I+   L +   L  L L  N
Sbjct: 174 LNYLRISEA------KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQ 116
                    L+ L  L+ L L  N+ L+ +  GL +L  L+ + L    IT + 
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVG 280

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 14/118 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEAL 59
           L     L  L L  N  I    +    L+ L  L++L LD   ++ +  GL  LK L+ +
Sbjct: 213 LLRYSKLYRLGLGHN-QIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVV 269

Query: 60  DLSSNY------YLHGSLEGLANLTNLQVLDLSGNQ----NLTTLGLANLPNLKTLDL 107
            L +N            +           + L  N      +       + +   +  
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
             +LDL  N +I+   L +     L +L  L L    I+ I     + L+ L+ L +S N
Sbjct: 56  TTLLDLQNN-DISE--LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 65  YYLHGSLEGLAN--LTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRD 109
                 L  +     ++L  L +  N+   +     + L N+  +++  
Sbjct: 113 -----HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
              L++L  L L  N  I+   +     + L  L+KL +    +  I       +L  L 
Sbjct: 74  FKGLQHLYALVLVNN-KISK--IHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELR 129

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLA----NLPNLKTLDLRDCGITTIQ 116
           +  N          + L N+  +++ GN  L   G      +   L  L + +  +T I 
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIP 188

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDL 61
              L  L L  N  I +  +    L   + L +L L    I  I+   L+ L  L  L L
Sbjct: 192 PETLNELHLDHN-KIQA--IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---------LANLPNLKTLDLRD 109
            +N  L     GL +L  LQV+ L  N  +T +G                  + L +
Sbjct: 249 DNNK-LSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 32  TNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
            +   LDL    I+ ++      L++L AL L +N       +  + L  LQ L +S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 90  NLTTLGLANLPNLKTLDLRDCGITTIQ 116
            L  +      +L  L + D  I  + 
Sbjct: 114 -LVEIPPNLPSSLVELRIHDNRIRKVP 139

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 18/101 (17%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRL--GLANLTNLKKLDLDGCGITTIQ--------GL 50
           L+ L  L+ L L  N       L+R+  GL +L  L+ + L    IT +           
Sbjct: 237 LSFLPTLRELHLDNN------KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 51  AKLKNLEALDLSSNYYLHGSLEGLA--NLTNLQVLDLSGNQ 89
            K      + L +N   +  ++      +T+   +     +
Sbjct: 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TI-QGLAKLKNLEA 58
           LANL YL  L +    N   G +    +A LT L  L +    ++  I   L+++K L  
Sbjct: 72  LANLPYLNFLYIG-GINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 59  LDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQ 89
           LD S N  L G+L   +++L NL  +   GN+
Sbjct: 130 LDFSYNA-LSGTLPPSISSLPNLVGITFDGNR 160

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDL-DGCGIT-TI-QGLAKLKNLE 57
                 +  LDLS   N+         LANL  L  L +     +   I   +AKL  L 
Sbjct: 46  DTQTYRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 58  ALDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQNLT---TLGLANLPNLKTLDLRD 109
            L ++    + G++ + L+ +  L  LD S N  L+      +++LPNL  +    
Sbjct: 105 YLYITHTN-VSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.0 bits (123), Expect = 7e-09
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 32/135 (23%)

Query: 1   LANLRYLQVLDLSANYNITS------GSLTRLG-----------------LANLTNLKKL 37
           +++L  L  +    N  I+       GS ++L                   ANL NL  +
Sbjct: 145 ISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202

Query: 38  DLDGCGIT-TI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLT--- 92
           DL    +           KN + + L+ N  L   L  +    NL  LDL  N  +    
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNN-RIYGTL 260

Query: 93  TLGLANLPNLKTLDL 107
             GL  L  L +L++
Sbjct: 261 PQGLTQLKFLHSLNV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TIQGLAKLKNLEAL 59
            ANL  L  +DLS   N+  G  + L   +  N +K+ L    +   +  +   KNL  L
Sbjct: 194 FANLN-LAFVDLS--RNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249

Query: 60  DLSSNYYLHGSL-EGLANLTNLQVLDLSGNQ 89
           DL +N  ++G+L +GL  L  L  L++S N 
Sbjct: 250 DLRNNR-IYGTLPQGLTQLKFLHSLNVSFNN 279

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.3 bits (116), Expect = 6e-08
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 28  LANLTNLKKLDLDGCGITTIQG----LAKLKNLEALDLSSNYYLHGSL-EGLANLTNLQV 82
                 +  LDL G  +         LA L  L  L +     L G +   +A LT L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 83  LDLSGNQNLT---TLGLANLPNLKTLDLRDCGIT 113
           L ++   N++      L+ +  L TLD     ++
Sbjct: 106 LYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALS 138

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
           L + R +++L+L+    I    +     A    ++KL +    I  +       +  L  
Sbjct: 71  LDSFRQVELLNLNDL-QIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L L  N           N   L  L +S N    +         +L+ L L    +T + 
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 9e-11
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG-LAKLKNLEAL 59
           L N   L  +DLS N  +    +       +  L++L +    +  +      +  L+ L
Sbjct: 250 LLNYPGLVEVDLSYN-ELEK--IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRD 109
           DLS N+ L            L+ L L  N  + TL L+    LK L L  
Sbjct: 307 DLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 10/123 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
             N   L  L +S N N+    +        T+L+ L L    +T +  L+ + +L   +
Sbjct: 143 FHNTPKLTTLSMSNN-NLER--IEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHAN 198

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
           +S N      L  LA    ++ LD S N  +  +       L  L L+   +T    +  
Sbjct: 199 VSYN-----LLSTLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDTAWLLN 252

Query: 121 FTS 123
           +  
Sbjct: 253 YPG 255

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 7e-10
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 18/132 (13%)

Query: 1   LANLRYLQVLDLSANY--NITSGSLTRLG-----------LANLTNLKKLDLDGCGITTI 47
                 LQ L LS+N   ++    +  L            LA    +++LD     I  +
Sbjct: 167 FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226

Query: 48  QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTL 105
           +G      L  L L  N         L N   L  +DLS N+   +       +  L+ L
Sbjct: 227 RGPV-NVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283

Query: 106 DLRDCGITTIQG 117
            + +  +  +  
Sbjct: 284 YISNNRLVALNL 295

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 4/119 (3%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEAL 59
           +NL+Y  V         T           L N K +      +  +    L   + +E L
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
           +L+            A    +Q L +  N    L      N+P L  L L    ++++ 
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 11/117 (9%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDL 61
              L +L L  N    +  L      N   L ++DL    +  I      K++ LE L +
Sbjct: 231 NVELTILKLQHNNLTDTAWL-----LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTIQ 116
           S+N  L         +  L+VLDLS N  L  +         L+ L L    I T++
Sbjct: 286 SNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK 340

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEAL 59
              ++ L+ L +S N  + + +L       +  LK LDL    +  ++    +   LE L
Sbjct: 274 FVKMQRLERLYISNN-RLVALNLY---GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDC 110
            L  N  +   L        L+ L LS N        A   N+    + D 
Sbjct: 330 YLDHNSIVTLKLS---THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 377

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYY 66
             +L LS N  + +   +   L   T L +L+LD   +T +Q    L  L  LDLS N  
Sbjct: 33  TTILHLSEN-LLYT--FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN-- 87

Query: 67  LHGSLEGL-ANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITTIQ 116
              SL  L   L  L VLD+S N+ LT+L    L  L  L+ L L+   + T+ 
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLP 140

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGL-ANLTNLKKLDLDGCGITTIQGL-AKLKNLEA 58
           L     L  L+L          LT+L +   L  L  LDL    + ++  L   L  L  
Sbjct: 51  LMPYTRLTQLNLDRA------ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITTI 115
           LD+S N      L  L  L  LQ L L GN+ L TL    L   P L+ L L +  +T +
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163

Query: 116 Q 116
            
Sbjct: 164 P 164

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRL--GLANLTNLKKLDLDGCGITTIQG--LAKLKNLE 57
             L  L  LDLS N       L  L      L  L  LD+    +T++    L  L  L+
Sbjct: 74  GTLPVLGTLDLSHN------QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCGITT 114
            L L  N         L     L+ L L+ N  LT L    L  L NL TL L++  + T
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 115 I 115
           I
Sbjct: 187 I 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 30  NLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
            + +  +++ D   +T +   L   K+   L LS N     SL  L   T L  L+L   
Sbjct: 8   KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 89  QNLTTLGL-ANLPNLKTLDLRDCGITTIQGI 118
           + LT L +   LP L TLDL    + ++  +
Sbjct: 66  E-LTKLQVDGTLPVLGTLDLSHNQLQSLPLL 95

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 26/111 (23%)

Query: 2   ANLRYLQVLDLSANYNITS---------GSLTRLGLAN-------------LTNLKKLDL 39
             L  L VLD+S N  +TS         G L  L L                  L+KL L
Sbjct: 97  QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 40  DGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
               +T +    L  L+NL+ L L  N  L+   +G      L    L GN
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 31  LTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLA--NLTNLQVLDLS 86
             + + L L    + TI     + L N+  + +S +  L   LE  +  NL+ +  +++ 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIR 88

Query: 87  GNQNLTTLG---LANLPNLKTLDLRDCGITTIQGIQQFTS 123
             +NLT +    L  LP LK L + + G+     + +  S
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 34/148 (22%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEA--- 58
            NL  +  +++    N+T   +    L  L  LK L +   G+     L K+ + +    
Sbjct: 77  YNLSKVTHIEIRNTRNLTY--IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI 134

Query: 59  LDLSSNYYLH----GSLEGLANL---------------------TNLQVLDLSGNQNLTT 93
           L+++ N Y+      + +GL N                      T L  + L+ N+ LT 
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV 194

Query: 94  LG---LANLPN-LKTLDLRDCGITTIQG 117
           +       + +    LD+    +T +  
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVTALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 12/115 (10%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTN-LKKLDLDGCGITTIQGLA-KLKNLEA 58
           + +     +L+++ N  +TS  +       L N    L L   G T++QG A     L+A
Sbjct: 126 VYSTDIFFILEITDNPYMTS--IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDA 183

Query: 59  LDLSSNYYLH----GSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDL 107
           + L+ N YL      +  G+   +   +LD+S      L + GL +L  L   + 
Sbjct: 184 VYLNKNKYLTVIDKDAFGGV--YSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 7e-11
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEA 58
           L     L  L +    ++    L    L  L  L+ L +   G+  +   A      L  
Sbjct: 27  LPGAENLTELYIENQQHLQH--LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 59  LDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
           L+LS N  L           +LQ L LSGN
Sbjct: 85  LNLSFN-ALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-09
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHG-SLEGLANLTNLQVLDLSGNQNLTTLG---LANL 99
           + ++  L   +NL  L + +  +L    L  L  L  L+ L +  +  L  +        
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFT 79

Query: 100 PNLKTLDLRDCGITTIQ 116
           P L  L+L    + ++ 
Sbjct: 80  PRLSRLNLSFNALESLS 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 63  SNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITTIQ 116
           +      SL  L    NL  L +   Q+L  L    L  L  L+ L +   G+  + 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 6e-08
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 12/105 (11%)

Query: 27  GLANLTNLKKLDLDGC-GITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83
            L    NL +L ++    +  ++   L  L  L  L +  +     + +       L  L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 84  DLSGNQNLTTL--GLANLPNLKTLDLR------DCGITTIQGIQQ 120
           +LS N  L +L        +L+ L L        C +  +Q  ++
Sbjct: 86  NLSFNA-LESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 8e-11
 Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEA 58
            A L +L+ L++ A+ ++ S       L ++ N+  L L       +  +      ++E 
Sbjct: 170 FAGLTFLEELEIDAS-DLQS--YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 59  LDLSSNYYLH--------GSLEGLANLTNLQVLDLSGNQNLTTLGLA-NLPNLKTLDLRD 109
           L+L               G    L      + + ++       + L   +  L  L+   
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

Query: 110 CGITTI 115
             + ++
Sbjct: 287 NQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG---LAKLKNLE 57
            ++L  L+ LDLS N  +++  L+      L++L  L+L G    T+      + L  L+
Sbjct: 96  FSSLGSLEHLDLSYN-YLSN--LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 58  ALDLSSNYYLHGSLEG-LANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT 114
            L + +            A LT L+ L++  +   +     L ++ N+  L L       
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

Query: 115 IQ 116
           + 
Sbjct: 213 LL 214

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
           L     LQ L L++N  I +  +     ++L +L+ LDL    ++ +       L +L  
Sbjct: 72  LQRCVNLQALVLTSN-GINT--IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128

Query: 59  LDLSSNYYLH-GSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITT 114
           L+L  N Y   G     ++LT LQ+L +      T +     A L  L+ L++    + +
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 115 IQ 116
            +
Sbjct: 189 YE 190

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 6e-09
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 17  NITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGL 74
             +SGSL  +       +K LDL    IT I    L +  NL+AL L+SN       +  
Sbjct: 37  KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96

Query: 75  ANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCGITTIQGIQQF 121
           ++L +L+ LDLS N  L+ L       L +L  L+L      T+     F
Sbjct: 97  SSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 18/122 (14%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ----------GL 50
           L +++ +  L L          L  + +   ++++ L+L    + T             L
Sbjct: 194 LKSIQNVSHLILHMK-QHIL--LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 51  AKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDL 107
            K      + ++    L   ++ L  ++ L  L+ S NQ L ++       L +L+ + L
Sbjct: 251 IKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWL 308

Query: 108 RD 109
             
Sbjct: 309 HT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRL------GLANLTNLKKLDLDGCGITTIQGLA-KLKN 55
               ++ L+L     + +   + L       L      + + +    +  +  L  ++  
Sbjct: 220 VTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278

Query: 56  LEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
           L  L+ S N            LT+LQ + L  N
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.9 bits (137), Expect = 9e-11
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKL----KNLE 57
            NLR L+ +       ++   L RL  A   +L+ L LD C   T  GL  +    + ++
Sbjct: 109 NNLRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIK 167

Query: 58  ALDLSSNYYLHGSLEGLA----NLTNLQVLDLS--GNQNLTTLGL----ANLPNLKTLDL 107
            L +  + +     + L     + T+L+VL+        ++   L     N  +L ++ +
Sbjct: 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227

Query: 108 RDCGITTIQGI 118
            D  I  + G 
Sbjct: 228 GDFEILELVGF 238

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 14/126 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLT---RLGLANLTNLKKLDL-DGCGITTIQGLAKL--- 53
           L NL   +++ L     IT   L    R  L     L++       G  T  GL+ +   
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 54  -KNLEALDLSSNYYLHGSLEGLA-NLTNLQVLDLSGNQNLTTLGLA----NLPNLKTLDL 107
             N+  + L         L   +    NLQ L++ G    +   +A     LP+L+ L +
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWV 520

Query: 108 RDCGIT 113
           +    +
Sbjct: 521 QGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 26/137 (18%)

Query: 3   NLRYLQVLDLS-----ANYNITSGSLTRLGLA----NLTNLKKLDLDGCGITT------I 47
             + L+ L +             G +++ GL         L+ + +    IT        
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 48  QGLAKLKNLEALDLSSNYYL------HGSLEGLANLTNLQVLDLSGN-QNLTTLGLANL- 99
             L  L +   + L     +      +G    L     L+          LT LGL+ + 
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459

Query: 100 ---PNLKTLDLRDCGIT 113
              PN++ + L   G +
Sbjct: 460 QYSPNVRWMLLGYVGES 476

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
             N R L  + +     +      +   ANL       L+       + +  +   +   
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKA-AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274

Query: 61  LSSNYYLHGSLEGLA-NLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDC 110
           L  +Y     +  L      ++ LDL      T      +   PNL+ L+ R+ 
Sbjct: 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 28/127 (22%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
               ++ + L      +   L         NL+KL++ GC  +                 
Sbjct: 461 YSPNVRWMLLG-YVGESDEGLMEF-SRGCPNLQKLEMRGCCFSE---------------- 502

Query: 63  SNYYLHGSLEGLANLTNLQVLDLSGNQNLTT----LGLA-NLPNLKTLDLRDCGITTIQG 117
                      +  L +L+ L + G +   T    + +A    N++ +  R       QG
Sbjct: 503 -----RAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQG 557

Query: 118 IQQFTSY 124
             +   +
Sbjct: 558 EIREMEH 564

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 10  LDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHG 69
           + ++  Y  T   L         NL+ L L G     +  L         +    Y    
Sbjct: 55  VTMALCYTATPDRL----SRRFPNLRSLKLKGKPRAAMFNLI-------PENWGGYVTPW 103

Query: 70  SLEGLANLTNLQVLDLSG----NQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
             E   NL  L+ +        + +L  L  A   +L+TL L  C   T  G+    +
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEAL 59
            +   LQVLDLS    I   ++      +L++L  L L G  I ++     + L +L+ L
Sbjct: 49  FSFPELQVLDLSRC-EIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLA----NLPNLKTLDLRDCGITTI 115
                         + +L  L+ L+++ N  + +  L     NL NL+ LDL    I +I
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 116 Q 116
            
Sbjct: 165 Y 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDLSSN 64
            + LDLS N  +    L      +   L+ LDL  C I TI+  A   L +L  L L+ N
Sbjct: 30  TKNLDLSFN-PLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT 122
                +L   + L++LQ L        +L    + +L  LK L++    I + +  + F+
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 123 S 123
           +
Sbjct: 147 N 147

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 8e-08
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 32  TNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
            + K LDL    +  +          L+ LDLS             +L++L  L L+GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 90  NLTTLG---LANLPNLKTLDLRDCGITTIQ 116
            + +L     + L +L+ L   +  + +++
Sbjct: 88  -IQSLALGAFSGLSSLQKLVAVETNLASLE 116

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 15/118 (12%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGL-ANLTNLKKLDLDGCGITTI-----QGLAKLKN 55
            +L+ L+ L+++ N  I S         +NLTNL+ LDL    I +I     + L ++  
Sbjct: 121 GHLKTLKELNVAHN-LIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 56  LEA-LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRD 109
           L   LDLS N  ++    G      L+ L L  NQ L ++       L +L+ + L  
Sbjct: 178 LNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 23/128 (17%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLD--------GCGITTIQGL---AKLKN 55
           L+ L++ +   +    +  +  ++L NL+KL L            +   + L    +  N
Sbjct: 195 LKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253

Query: 56  LEALDLSSNYYLHGSLEGLAN---LTNLQVLDLSGNQNLTTLG-------LANLPNLKTL 105
           L+ L +      +  +E       L  L+ +D+S    LT  G       +  + +LK +
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFI 312

Query: 106 DLRDCGIT 113
           +++   ++
Sbjct: 313 NMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 2   ANLRYLQVLDLSANYNITSGSLT------RLGLANLTNLKKLDLDGCGITT--IQGLAK- 52
           ++L  L+ L L                          NLK L +         ++   + 
Sbjct: 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275

Query: 53  --LKNLEALDLSSNYY----LHGSLEGLANLTNLQVLDLSGNQ 89
             L  LE +D+S+           L+ +  + +L+ +++  N 
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 18/127 (14%)

Query: 5   RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLA--KLKNLEALD 60
             L  + L  N  I   +   +G     NLK L++   G+    ++ +    L NLE L 
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225

Query: 61  L---SSNYYLHGSLEGLA------NLTNLQVLDLSGNQNLTTLGLA-----NLPNLKTLD 106
           L     +Y   G +             NL+ L +   +    +         LP L+T+D
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 107 LRDCGIT 113
           +    +T
Sbjct: 286 ISAGVLT 292

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 33  NLKKLDLDGCGIT--TIQGLAKLKNLEALDLSSNYYLH-GSLEGLANLTN----LQVLDL 85
            ++ +D     I       +  L+ +E + L   +Y+  G LE L+ L N    +  +++
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 86  SGNQNLTTLG---LANLPNLKTLDLRDCGITTIQGI 118
               N+T  G   L +  NLK L L D      +  
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEK 157

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 18/121 (14%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC------GITTIQGLAKL-KN 55
           +   +Q +D + +  I S     +    L  ++K+ L  C       +  +  L  L K+
Sbjct: 59  DKYKIQAIDAT-DSCIMSIGFDHM--EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKS 115

Query: 56  LEALDLSSNYYL-HGSLEGLANLTNLQVLDLSGNQNLTTLGLA------NLPNLK-TLDL 107
           +  +++ S   +    +  L +  NL+ L LS    +            +LP+L+  LDL
Sbjct: 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKLDL 175

Query: 108 R 108
           +
Sbjct: 176 K 176

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 55  NLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANL-------PNLKTLDL 107
            ++A+D + +  +    + +  L  ++ + L     +    L  L        ++  +++
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 108 RDCGITTIQGIQQFTS 123
             CG  T +GI     
Sbjct: 122 ISCGNVTDKGIIALHH 137

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 5e-10
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           ++    L  L+ + N      +LT + +++ T L +LD       T   +     L  LD
Sbjct: 123 VSQNPLLTYLNCARN------TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
            S N      +        L  L+   N  +T L L     L  LD     +T I
Sbjct: 177 CSFNKITELDVS---QNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSNKLTEI 227

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 17  NITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLAN 76
                +   +    L  L  LD     IT + G+ KL  L  L  +SN     +L+ L+ 
Sbjct: 27  AFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI--TTLD-LSQ 83

Query: 77  LTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
            TNL  L    N+ LT L +  L  L  L+     +T +
Sbjct: 84  NTNLTYLACDSNK-LTNLDVTPLTKLTYLNCDTNKLTKL 121

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 11/123 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +  L  L  L  ++N      ++T L L+  TNL  L  D   +T +  +  L  L  L+
Sbjct: 60  IEKLTGLTKLICTSN------NITTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLN 112

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
             +N      +   +    L  L+ + N  LT + +++   L  LD       T   +  
Sbjct: 113 CDTNKLTKLDV---SQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTP 168

Query: 121 FTS 123
            T 
Sbjct: 169 QTQ 171

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +  L  L   D S N       LT L ++ L+ L  L      +  I  L     L    
Sbjct: 229 VTPLTQLTYFDCSVN------PLTELDVSTLSKLTTLHCIQTDLLEID-LTHNTQLIYFQ 281

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
                 +      + + T L +LD      +T L L+  P L  L L +  +T +
Sbjct: 282 AEGCRKI--KELDVTHNTQLYLLDCQAAG-ITELDLSQNPKLVYLYLNNTELTEL 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L     L  LD S+N       LT + +  LT L   D     +T +  ++ L  L  L 
Sbjct: 208 LNQNIQLTFLDCSSN------KLTEIDVTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLH 260

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
                     ++ L + T L      G + +  L + +   L  LD +  GIT +
Sbjct: 261 CIQT--DLLEID-LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L+    L  L   +N       LT L +  LT L  L+ D   +T +  +++   L  L+
Sbjct: 81  LSQNTNLTYLACDSN------KLTNLDVTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLN 133

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
            + N      +    + T L  LD   N+ +T L +     L TLD     IT +
Sbjct: 134 CARNTLTEIDVS---HNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 11/123 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           ++  + L  L+   N      ++T+L L     L  LD     +T I  +  L  L   D
Sbjct: 187 VSQNKLLNRLNCDTN------NITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFD 239

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ 120
            S N     +   ++ L+ L  L       L  + L +   L       C       +  
Sbjct: 240 CSVN---PLTELDVSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYFQAEGCRKIKELDVTH 295

Query: 121 FTS 123
            T 
Sbjct: 296 NTQ 298

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 11/128 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L+    L  L L+         LT L +++ T LK L      I     + K+  L    
Sbjct: 314 LSQNPKLVYLYLNNT------ELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNF 367

Query: 61  LSSN-----YYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
            +            +   L    +  +LD  GN      G   + +  T  +    ++T 
Sbjct: 368 EAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTD 427

Query: 116 QGIQQFTS 123
                +T 
Sbjct: 428 NPAVTYTF 435

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 8e-10
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEA 58
            + L+ LQ L +          +       L++L  L LD      ++      L NLE 
Sbjct: 50  FSRLQDLQFLKVE--QQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107

Query: 59  LDLSSNYYLHGSLEG--LANLTNLQVLDLSGNQNLTTLGLA----NLPNLKTLDLRDCGI 112
           L L+        L G     LT+L++L L  N  +  +  A    N+     LDL    +
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKV 166

Query: 113 TTI 115
            +I
Sbjct: 167 KSI 169

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 4e-09
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSN 64
           ++  DLS +  I +  L +   ++ T+L++L L    I  I       L +L  L+LS N
Sbjct: 277 VKTCDLSKS-KIFA--LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 65  YYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ 116
           +          NL  L+VLDLS N    L       LPNLK L L    + ++ 
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEAL 59
           ++   L+ L L+ N  I    +       LT+L KL+L    + +I       L  LE L
Sbjct: 296 SHFTDLEQLTLAQN-EINK--IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRD 109
           DLS N+      +    L NL+ L L  NQ  ++       L +L+ + L  
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG---LAKLKNLEALDLSS 63
           +  +DLS N +I    L     + L +L+ L ++      +        L +L  L L  
Sbjct: 32  VNYVDLSLN-SIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 64  NYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGL-----ANLPNLKTLDLRDCGITTIQ 116
           N +L         L NL+VL L+    L    L       L +L+ L LRD  I  IQ
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 16/131 (12%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLE 57
              L  L+VL L+   N+    L+      LT+L+ L L    I  IQ       ++   
Sbjct: 99  FNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157

Query: 58  ALDLSSN----------YYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLA--NLPNLKTL 105
            LDL+ N              G    L  L+++ + D++                ++ TL
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217

Query: 106 DLRDCGITTIQ 116
           DL   G     
Sbjct: 218 DLSGNGFKESM 228

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 32  TNLKKLDLDGCGITTIQGLA--KLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGN 88
            ++  +DL    I  +   +  +L++L+ L +                L++L +L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 89  Q--NLTTLGLANLPNLKTLDLRDCGIT 113
           Q   L T     L NL+ L L  C + 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLD 116

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  NLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRDCG 111
           ++  +DLS N     +    + L +LQ L +        +       L +L  L L    
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 112 ITTI 115
              +
Sbjct: 91  FLQL 94

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 9/123 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC-GITTIQG--LAKLKNLE 57
            +    L+ +++S N  +    +     +NL  L ++ ++    +  I       L NL+
Sbjct: 50  FSGFGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLP-NLKTLDLRDCGIT 113
            L +S+    H       +     +LD+  N N+ T+       L      L L   GI 
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167

Query: 114 TIQ 116
            I 
Sbjct: 168 EIH 170

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 32/145 (22%), Positives = 48/145 (33%), Gaps = 32/145 (22%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAK--LKNLEAL 59
           +NL  L  + +    N+    +      NL NL+ L +   GI  +  + K        L
Sbjct: 76  SNLPKLHEIRIEKANNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 60  DLSSNYYLH----GSLEGLA---------------------NLTNLQVLDLSGNQNLTTL 94
           D+  N  +H     S  GL+                     N T L  L+LS N NL  L
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 95  G---LANLPNLKTLDLRDCGITTIQ 116
                        LD+    I ++ 
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLP 218

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 32  TNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHG-SLEGLANLTNLQVLDLSGN 88
            N  +L      +  IQ    +   +LE +++S N  L     +  +NL  L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 89  QNLTTL---GLANLPNLKTLDLRDCGITTIQ 116
            NL  +      NLPNL+ L + + GI  + 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG---LAKLKNLEALDLSS 63
              L       +    + +   +   +L+K+++    +  +      + L  L  + +  
Sbjct: 32  AIELRFVLT-KLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 64  NYYLHG-SLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRD 109
              L   + E   NL NLQ L +S     +L  +   +      LD++D
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 26/132 (19%), Positives = 36/132 (27%), Gaps = 31/132 (23%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLT-NLKKLDLDGCGITTIQG------------ 49
           +     +LD+  N NI +  + R     L+     L L+  GI  I              
Sbjct: 126 HSLQKVLLDIQDNINIHT--IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 50  --------------LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG 95
                                  LD+S          GL NL  L+       + L T  
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-- 241

Query: 96  LANLPNLKTLDL 107
           L  L  L    L
Sbjct: 242 LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSN 64
           L  L+LS N N+    L        +    LD+    I ++   GL  LK L A    + 
Sbjct: 179 LDELNLSDNNNLEE--LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

Query: 65  YYLHGSLEGLANLTNLQVLDLSGN 88
                 L  L  L  L    L+  
Sbjct: 237 K----KLPTLEKLVALMEASLTYP 256

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 18/118 (15%)

Query: 8   QVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNY 65
             L L+ N   T    T +    L  L+K++     IT I+         +  + L+SN 
Sbjct: 35  AELRLNNN-EFTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91

Query: 66  YLHGSLEGL-----ANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCGITTI 115
                LE +       L +L+ L L  N+ +T +       L +++ L L D  ITT+
Sbjct: 92  ----RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDL 61
              +  + L++N  + +  +       L +LK L L    IT +   +   L ++  L L
Sbjct: 80  ASGVNEILLTSN-RLEN--VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGN 88
             N     +      L +L  L+L  N
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 3e-09
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 12/121 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT--TIQGLAKL----K 54
             + +  +VL LS+    ++  L  +  A   NLK+LDL    +   +   L+       
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184

Query: 55  NLEALDLSSNYYL--HGSLEGLA-NLTNLQVLDLSGNQNLTTLG--LANLPNLKTLDLRD 109
           +L +L++S         +LE L     NL+ L L+    L  L   L   P L+ L    
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244

Query: 110 C 110
            
Sbjct: 245 Y 245

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 10/131 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKL-DLDGCGITTIQGLAKL----KN 55
           L     L+ L            +       L+  K+L  L G        L  +      
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 56  LEALDLS----SNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCG 111
           L  L+LS     +Y L   L     L  L VLD   +  L  L  +   +L+ L +    
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA-STCKDLRELRVFPSE 349

Query: 112 ITTIQGIQQFT 122
              ++     T
Sbjct: 350 PFVMEPNVALT 360

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 7e-07
 Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 16/126 (12%)

Query: 3   NLRYLQVLDLS---------ANYNITSGSLTRLGLANLTNLKKLDLDGC-GITTIQGLAK 52
           N   +    L                      + + +  +L++L L G       + +  
Sbjct: 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI-VEHCKDLRRLSLSGLLTDKVFEYIGT 453

Query: 53  -LKNLEALDLSSNYYLHGSLEGLA-NLTNLQVLDLSGNQNLT---TLGLANLPNLKTLDL 107
             K +E L ++        +  +     +L+ L++              + L  +++L +
Sbjct: 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513

Query: 108 RDCGIT 113
             C ++
Sbjct: 514 SSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +     ++ ++L    +    +L   G           +           +    LE + 
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAM----------SSSYTWLEEIR 111

Query: 61  LSSNYYLHGSLEGLA-NLTNLQVLDLSGNQNLTTLGLA----NLPNLKTLDLRDCGITTI 115
           L         LE +A +  N +VL LS  +  +T GLA       NLK LDLR+  +  +
Sbjct: 112 LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 16/122 (13%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT---IQGLAKLKNLEALDLSS 63
            ++  LS  ++     L  +  +  + L  L+L    + +   ++ L +   L+ L +  
Sbjct: 265 KELRCLSGFWDAVPAYLPAV-YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323

Query: 64  NYYLHGSLEGLANLTNLQVLDL--------SGNQNLTTLGLA----NLPNLKTLDLRDCG 111
                G     +   +L+ L +          N  LT  GL       P L+++      
Sbjct: 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383

Query: 112 IT 113
           +T
Sbjct: 384 MT 385

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 40/158 (25%)

Query: 1   LANLRYLQVLDLSANY--NITSGSLTRLGLANLTNLKKLDLDGC-GITTIQGLAKL---- 53
            A  R L+ LDL  +   +++   L+       T+L  L++       +   L +L    
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFP-DTYTSLVSLNISCLASEVSFSALERLVTRC 210

Query: 54  KNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG------------------ 95
            NL++L L+    L      L     L+ L   G                          
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 96  --------------LANLPNLKTLDLRDCGITTIQGIQ 119
                          +    L TL+L    + +   ++
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK 308

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 14/121 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--------LAK 52
           +     L+ L L+    +         L     L++L   G                L+ 
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKL---ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263

Query: 53  LKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---LANLPNLKTLDLRD 109
            K L  L    +          +  + L  L+LS     +      L   P L+ L + D
Sbjct: 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323

Query: 110 C 110
            
Sbjct: 324 Y 324

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 4e-09
 Identities = 30/130 (23%), Positives = 40/130 (30%), Gaps = 8/130 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTR-LGLANLTNLKKLDLDGCGITTIQG-----LAKLK 54
           +     L  LDLS N  +    L   L       L+ L L   G+ T  G      A   
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 55  NLEALDLSSNYYLHG-SLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGIT 113
            L+ LDLS N              + L  L+LS    L  +       L  LDL    + 
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLD 287

Query: 114 TIQGIQQFTS 123
                 +   
Sbjct: 288 RNPSPDELPQ 297

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI---QGLAKLKNLEAL 59
               LQVL L      T   +     A    L+ LDL    +              L +L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRD 109
           +LS    L    +GL     L VLDLS N+         LP +  L L+ 
Sbjct: 259 NLSFTG-LKQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGS-LTRLGLANLTNLKKLDLDGCGITTIQGLA------KL 53
           L  L    + +L+      +G+    L  A   +L  L+L      T             
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 54  KNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLAN------LPNLKTLDL 107
             L+ L ++  + L+ S E +     L  LDLS N  L   GL +       P L+ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 108 RDCGITTIQGI 118
           R+ G+ T  G+
Sbjct: 209 RNAGMETPSGV 219

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 15/124 (12%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA------KLKNLE 57
              L+VL ++      S + +   +     L  LDL        +GL       K   L+
Sbjct: 148 KPGLKVLSIA---QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 58  ALDLSSNYYLHGSLEG---LANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCG 111
            L L +      S       A    LQ LDLS N                L +L+L   G
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 112 ITTI 115
           +  +
Sbjct: 265 LKQV 268

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 5e-05
 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
            A    LQ LDLS  +N    +         + L  L+L   G+  +        L  LD
Sbjct: 224 AAARVQLQGLDLS--HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-GLPAKLSVLD 280

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
           LS N  L         L  +  L L GN 
Sbjct: 281 LSYNR-LD-RNPSPDELPQVGNLSLKGNP 307

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 7e-09
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 24/124 (19%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYY 66
             VL++  +       LT L      ++  L +    +T++  L     L  L++S N  
Sbjct: 42  NAVLNVGES------GLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-Q 92

Query: 67  LHGSLEGLANLTNLQVLDLSGNQ------NLTTLGLAN---------LPNLKTLDLRDCG 111
           L         L  L +              L  L +            P L+ L + D  
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152

Query: 112 ITTI 115
           + ++
Sbjct: 153 LASL 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 26/126 (20%)

Query: 7   LQVLDLSANYNITS-----GSLTRLGLAN---------LTNLKKLDLDGCGITTIQGLAK 52
           LQ L +S N  + S       L +L   N          + LK+L + G  +T++  L  
Sbjct: 183 LQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL-- 239

Query: 53  LKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRD 109
              L+ L +S N      L  L    + L  L +  NQ LT L   L +L +  T++L  
Sbjct: 240 PSELKELMVSGNR-----LTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEG 293

Query: 110 CGITTI 115
             ++  
Sbjct: 294 NPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 22/127 (17%)

Query: 1   LANLRYLQVLDLSANYNITS--GSLTRLGLAN---------LTNLKKLDLDGCGITTIQG 49
              L  L +       ++ +    L +L +              L++L +    + ++  
Sbjct: 100 PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA 158

Query: 50  LAKLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLR 108
           L     L  L   +N      L  L    + LQ L +S NQ L +L       L  L   
Sbjct: 159 L--PSELCKLWAYNN-----QLTSLPMLPSGLQELSVSDNQ-LASLP-TLPSELYKLWAY 209

Query: 109 DCGITTI 115
           +  +T++
Sbjct: 210 NNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 25/129 (19%)

Query: 2   ANLRYLQVLDLSANYNITS-----GSLTRLGLANL---------TNLKKLDLDGCGITTI 47
           A    L+ L++S N  +TS       L  L + +          + L KL + G  +T++
Sbjct: 78  ALPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL 136

Query: 48  QGLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLD 106
             L     L+ L +S N      L  L A  + L  L    NQ LT+L       L+ L 
Sbjct: 137 PVL--PPGLQELSVSDN-----QLASLPALPSELCKLWAYNNQ-LTSLP-MLPSGLQELS 187

Query: 107 LRDCGITTI 115
           + D  + ++
Sbjct: 188 VSDNQLASL 196

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 4e-07
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 23  LTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNL 80
           + ++          L++   G+TT+   L    ++  L +  N     +L  L A    L
Sbjct: 31  VQKMRACLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDN-----NLTSLPALPPEL 83

Query: 81  QVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTI 115
           + L++SGNQ LT+L      L  L         +  +
Sbjct: 84  RTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPAL 119

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYY 66
           L+ L +S N       LT L     + LK+L + G  +T++  L     L +L +  N  
Sbjct: 223 LKELIVSGN------RLTSLP-VLPSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQ- 272

Query: 67  LHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
           L    E L +L++   ++L GN  L+   L  L  + +   
Sbjct: 273 LTRLPESLIHLSSETTVNLEGNP-LSERTLQALREITSAPG 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 8e-09
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 13/116 (11%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L N  +L+++D+  N      SL +L      +L+ +      +  +  L  L  L A+ 
Sbjct: 149 LQNSSFLKIIDVDNN------SLKKL-PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIY 201

Query: 61  LSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
             +N     SL+ L     +L+ +    N       L NLP L T+   +  + T+
Sbjct: 202 ADNN-----SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL 252

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 23/130 (17%)

Query: 2   ANLRYLQVLDLSANYNITS-----GSLTRLGLANL---------TNLKKLDLDGCGITTI 47
               +L+ L  S N ++T       SL  L + N            L+ L +    +  +
Sbjct: 88  ELPPHLESLVASCN-SLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 48  QGLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTL-GLANLPNLKTL 105
             L     L+ +D+ +N     SL+ L     +L+ +    NQ L  L  L NLP L  +
Sbjct: 147 PELQNSSFLKIIDVDNN-----SLKKLPDLPPSLEFIAAGNNQ-LEELPELQNLPFLTAI 200

Query: 106 DLRDCGITTI 115
              +  +  +
Sbjct: 201 YADNNSLKKL 210

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 7   LQVLDLSANYNITSGSLTRLG-LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNY 65
           L+ L +S N       L +L  L N + LK +D+D   +  +  L    +LE +   +N 
Sbjct: 133 LEYLGVSNN------QLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQ 184

Query: 66  YLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
                L  L NL  L  +    N  L  L      +L+++   +  +  +  +Q    
Sbjct: 185 L--EELPELQNLPFLTAIYADNNS-LKKLP-DLPLSLESIVAGNNILEELPELQNLPF 238

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 18/133 (13%)

Query: 1   LANLRYLQVLDLSAN----------YNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGL 50
             N++       + +                +++RL         +L+L+  G++++   
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP-- 87

Query: 51  AKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDC 110
               +LE+L  S N  L    E   +L +L V + +    L+ L     P L+ L + + 
Sbjct: 88  ELPPHLESLVASCN-SLTELPELPQSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNN 141

Query: 111 GITTIQGIQQFTS 123
            +  +  +Q  + 
Sbjct: 142 QLEKLPELQNSSF 154

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 20/116 (17%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
             +L +L V +   +       L+ L      NL  L+     I ++  L    +LE L+
Sbjct: 276 PQSLTFLDVSENIFS------GLSEL----PPNLYYLNASSNEIRSLCDL--PPSLEELN 323

Query: 61  LSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
           +S+N      L  L A    L+ L  S N  L  +      NLK L +    +   
Sbjct: 324 VSNN-----KLIELPALPPRLERLIASFNH-LAEVP-ELPQNLKQLHVEYNPLREF 372

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 19/118 (16%)

Query: 8   QVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNY 65
             + L  N  I    +     +    L+++DL    I+ +       L++L +L L  N 
Sbjct: 35  TEIRLEQN-TIKV--IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90

Query: 66  YLHGSLEGL-----ANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCGITTI 115
                +  L       L +LQ+L L+ N+ +  L      +L NL  L L D  + TI
Sbjct: 91  ----KITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 4   LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDL 61
           LR L  L L  N  IT   L +     L +L+ L L+   I  ++  A   L NL  L L
Sbjct: 79  LRSLNSLVLYGN-KITE--LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGN 88
             N     +    + L  +Q + L+ N
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDLSSN 64
             +L++S N  I+   L    + +L+ L+ L +    I  +        + LE LDLS N
Sbjct: 23  TTILNISQN-YISE--LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 65  YYLHGSLEGL--ANLTNLQVLDLSGNQNLTTLGLA----NLPNLKTLDLRDCGITTI 115
                 L  +      NL+ LDLS N     L +     N+  LK L L    +   
Sbjct: 80  -----KLVKISCHPTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKS 130

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI---QGLAKLKNLEAL 59
           +L  L+ L L  N  +   S        + +L++LD+    ++        +  K+L +L
Sbjct: 346 HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRDCGITTI 115
           ++SSN         L     ++VLDL  N+ + ++   +  L  L+ L++    + ++
Sbjct: 405 NMSSNILTDTIFRCL--PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSV 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 4e-07
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 9/109 (8%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA---KLKNLEAL 59
             + L+ LDLS N       L ++      NLK LDL       +        +  L+ L
Sbjct: 67  FNQELEYLDLSHN------KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 60  DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLR 108
            LS+ +    S+  +A+L   +VL + G           L +  T  L 
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 5/125 (4%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
           +L+ L +  + ++      S      +N+ N+K   + G  +  +   +K+     LD S
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNM-NIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 63  SNYYLHGSLEGLANLTNLQVLDLSGNQ----NLTTLGLANLPNLKTLDLRDCGITTIQGI 118
           +N       E   +LT L+ L L  NQ    +        + +L+ LD+    ++  +  
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 119 QQFTS 123
              + 
Sbjct: 393 GDCSW 397

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
            ++ LQ LD+S   N  S    +   +   +L  L++    +T          ++ LDL 
Sbjct: 372 QMKSLQQLDIS--QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429

Query: 63  SNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRD 109
           SN       + +  L  LQ L+++ NQ L ++       L +L+ + L  
Sbjct: 430 SNKIKSIP-KQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           + +L  L++L +S N  I    L          L+ LDL    +  I       NL+ LD
Sbjct: 41  ILSLSKLRILIISHN-RIQ--YLDISVFKFNQELEYLDLSHNKLVKIS-CHPTVNLKHLD 96

Query: 61  LSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
           LS N +    +     N++ L+ L LS    L    +  + +L    +
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKV 143

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 32  TNLKKLDLDGCGITTIQG--LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
                L++    I+ +    +  L  L  L +S N   +  +        L+ LDLS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 90  NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
            L  +      NLK LDL       +   ++F +
Sbjct: 81  -LVKISCHPTVNLKHLDLSFNAFDALPICKEFGN 113

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 19/124 (15%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG--LAKLKNLEAL 59
             L  L++L L+ N  + +  L       L NL+ L +    +  +      +L NL  L
Sbjct: 58  HRLTKLRLLYLNDN-KLQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114

Query: 60  DLSSNYYLHGSLEGL-----ANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDCG 111
            L  N      L+ L      +LT L  L L  N+ L +L       L +LK L L +  
Sbjct: 115 RLDRN-----QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ 168

Query: 112 ITTI 115
           +  +
Sbjct: 169 LKRV 172

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALD 60
            L  L  L L  N  + S  L      +LT L  L L    + ++      KL +L+ L 
Sbjct: 107 QLVNLAELRLDRN-QLKS--LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRD 109
           L +N            LT L+ L L  NQ   +      +L  LK L L++
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 2   ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDL 61
             +     L L+        +L+ L       +  L++    + ++       +LE LD 
Sbjct: 56  CLINQFSELQLNRL------NLSSLPDNLPPQITVLEITQNALISL--PELPASLEYLDA 107

Query: 62  SSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
             N      L  L     +L+ LD+  NQ LT L       L+ ++  +  +T +
Sbjct: 108 CDN-----RLSTLPELPASLKHLDVDNNQ-LTMLP-ELPALLEYINADNNQLTML 155

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 7e-05
 Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 23/135 (17%)

Query: 7   LQVLDLSANYNITS-----GSLTRLGLAN---------LTNLKKLDLDGCGITTI-QGLA 51
           L+ ++   N  +T       SL  L + N           +L+ LD+    + ++     
Sbjct: 142 LEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPV 200

Query: 52  KLKNLEA----LDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTL 105
           +  + E          N  +    E + +L     + L  N   +     L+        
Sbjct: 201 RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 106 DLRDCGITTIQGIQQ 120
                  +   G Q 
Sbjct: 260 HGPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGL--ANLTNLQVLDL 85
                       +     ++     +     L L+       +L  L       + VL++
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL-----NLSSLPDNLPPQITVLEI 87

Query: 86  SGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
           + N  L +L      +L+ LD  D  ++T+
Sbjct: 88  TQNA-LISL-PELPASLEYLDACDNRLSTL 115

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 17/109 (15%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDLSSN 64
            + L LS N +I+   L    ++ L+ L+ L L    I ++        ++LE LD+S N
Sbjct: 54  TKALSLSQN-SISE--LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110

Query: 65  YYLHGSLEGL--ANLTNLQVLDLSGNQNLTTLGLA----NLPNLKTLDL 107
                 L+ +    + +L+ LDLS N     L +     NL  L  L L
Sbjct: 111 -----RLQNISCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGL 153

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 7/112 (6%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
             N+  L+ LD+S N ++ S +  R   A   ++  L+L    +T          ++ LD
Sbjct: 399 TKNMSSLETLDVSLN-SLNSHAYDRT-CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD 456

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRD 109
           L +N  +    + + +L  LQ L+++ NQ L ++       L +L+ + L D
Sbjct: 457 LHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
            L  L+VL LS N  I   SL         +L+ LD+    +  I     + +L  LDLS
Sbjct: 74  FLSELRVLRLSHN-RIR--SLDFHVFLFNQDLEYLDVSHNRLQNIS-CCPMASLRHLDLS 129

Query: 63  SNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL 107
            N +    +     NLT L  L LS  +    L L  + +L    +
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCI 174

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
            L+ L +  +     + S        A + N+K L +       +       +   L+ +
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEM-NIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361

Query: 63  SNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLA--NLPNLKTLDLRDCGITTIQ 116
            N +     +G + L  LQ L L  N  L           N+ +L+  D  + ++ 
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLN 416

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 29/141 (20%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGIT------------- 45
           L     L  + LS N      +   L   L+  T L+ L L   G+              
Sbjct: 90  LLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 46  --TIQGLAKLKNLEALDLSSNYYLHGSL----EGLANLTNLQVLDLSGNQ-------NLT 92
               +       L ++    N   +GS+    +   +   L  + +  N        +L 
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 93  TLGLANLPNLKTLDLRDCGIT 113
             GLA    LK LDL+D   T
Sbjct: 209 LEGLAYCQELKVLDLQDNTFT 229

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 24/135 (17%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGITTI-------QGLA 51
             N   L+ +    N  + +GS+        +   L  + +   GI          +GLA
Sbjct: 155 AKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 52  KLKNLEALDLSSNYY-LHGSL---EGLANLTNLQVLDLSGNQNLTTLGLANL-------- 99
             + L+ LDL  N +   GS      L +  NL+ L L+    L+  G A +        
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLE 272

Query: 100 -PNLKTLDLRDCGIT 113
              L+TL L+   I 
Sbjct: 273 NIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 9e-07
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 31/142 (21%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLA-----------NLTNLKKLDLDGCGITTI-- 47
           L+    L+ L L  N  +   +  ++  A           N   L+ +      +     
Sbjct: 118 LSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 48  ----QGLAKLKNLEALDLSSNY-----YLHGSLEGLANLTNLQVLDLSGNQNLTTLG--- 95
               +     + L  + +  N        H  LEGLA    L+VLDL  N   T LG   
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSA 235

Query: 96  ----LANLPNLKTLDLRDCGIT 113
               L + PNL+ L L DC ++
Sbjct: 236 LAIALKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 27/132 (20%)

Query: 7   LQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGITTI------QGLAKLKNLEA 58
           ++   L  +  IT+     +   L    ++K++ L G  I T       + +A  K+LE 
Sbjct: 6   IEGKSLKLD-AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 59  LDLSSNYY----------LHGSLEGLANLTNLQVLDLSGNQNLTTLG-------LANLPN 101
            + S  +           L   L+ L     L  + LS N              L+    
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTP 123

Query: 102 LKTLDLRDCGIT 113
           L+ L L + G+ 
Sbjct: 124 LEHLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 32/136 (23%), Positives = 46/136 (33%), Gaps = 25/136 (18%)

Query: 1   LANLRYLQVLDLSANYNITS---GSLTRLGLANLTNLKKLDLDGCGITTI------QGLA 51
             + R L  + +  N  I       L   GLA    LK LDL     T +        L 
Sbjct: 183 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 52  KLKNLEALDLSSN-------YYLHGSLEGLANLTNLQVLDLSGNQ-------NLTTLGLA 97
              NL  L L+           +  +   L N+  LQ L L  N+        L T+   
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDE 300

Query: 98  NLPNLKTLDLRDCGIT 113
            +P+L  L+L     +
Sbjct: 301 KMPDLLFLELNGNRFS 316

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 21/133 (15%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGIT--TIQGLAKL--- 53
           L  L+  QV+ L     +T      +   L     L +L+L    +    +  + +    
Sbjct: 24  LPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82

Query: 54  --KNLEALDLSSNYYLHGSLEGLA----NLTNLQVLDLSGN-------QNLTTLGLANLP 100
               ++ L L +          L+     L  LQ L LS N       Q L    L    
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142

Query: 101 NLKTLDLRDCGIT 113
            L+ L L  C ++
Sbjct: 143 RLEKLQLEYCSLS 155

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 21/133 (15%)

Query: 1   LANLRYLQVLDLSANYNITSG--SLTRLGLANLTNLKKLDLDGCGITTI------QGLAK 52
           +A+   L+ L L +N     G   L    L   + L+ L +  CGIT        + L  
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 53  LKNLEALDLSSNYYLHGSLEGLANL-----TNLQVLDLSGNQNLTTLG-------LANLP 100
            ++L+ L L+ N         L          L+ L +      T          LA   
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNR 341

Query: 101 NLKTLDLRDCGIT 113
            L  L + +  + 
Sbjct: 342 FLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 21/127 (16%)

Query: 7   LQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGIT--TIQGLAKL-----KNLE 57
           L+ L +     IT+     L   L    +LK+L L G  +     + L +        LE
Sbjct: 258 LRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 58  ALDLSSNYYLHGSLEGLANL----TNLQVLDLSGN-------QNLTTLGLANLPNLKTLD 106
           +L + S  +        +++      L  L +S N       + L          L+ L 
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 107 LRDCGIT 113
           L DC ++
Sbjct: 377 LADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 21/127 (16%)

Query: 7   LQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGITT--IQGLAK-----LKNLE 57
           L+ L L +   +TS +   L   +A+  +L++L L    +    +  L          L 
Sbjct: 201 LEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 58  ALDLSSNYYLHGSLEGLA----NLTNLQVLDLSGN-------QNLTTLGLANLPNLKTLD 106
            L +            L        +L+ L L+GN       + L    L     L++L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 107 LRDCGIT 113
           ++ C  T
Sbjct: 320 VKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 23/128 (17%)

Query: 7   LQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGITT--IQGLAKL-----KNLE 57
           L+ L + +  + T+   +     LA    L +L +    +    ++ L +        L 
Sbjct: 315 LESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 58  ALDLSSNYYLHGSLEGLA----NLTNLQVLDLSGNQNLTTLGLANL--------PNLKTL 105
            L L+       S   LA       +L+ LDLS N  L   G+  L          L+ L
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQL 432

Query: 106 DLRDCGIT 113
            L D   +
Sbjct: 433 VLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 30/127 (23%), Positives = 43/127 (33%), Gaps = 21/127 (16%)

Query: 7   LQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGITT--IQGLAKL-----KNLE 57
           +Q L L     +T      L   L  L  L++L L    +    +Q L +        LE
Sbjct: 87  IQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 58  ALDLSSNYYLHGSLEGLA----NLTNLQVLDLSGNQ-------NLTTLGLANLPNLKTLD 106
            L L        S E LA       + + L +S N         L      +   L+ L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 107 LRDCGIT 113
           L  CG+T
Sbjct: 206 LESCGVT 212

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 15/87 (17%)

Query: 32  TNLKKLDLDGCGITTIQG-LAKLKNLEALDLSSNYYLHGSLEGL-----ANLTNLQVLDL 85
            ++ +L LDG   T +   L+  K+L  +DLS+N      +  L     +N+T L  L L
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-----RISTLSNQSFSNMTQLLTLIL 85

Query: 86  SGNQNLTTL---GLANLPNLKTLDLRD 109
           S N+ L  +       L +L+ L L  
Sbjct: 86  SYNR-LRCIPPRTFDGLKSLRLLSLHG 111

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 18/111 (16%)

Query: 8   QVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGL-AKLKNLEALDLSSNY 65
           Q+L L  + N  +  L      +L NLK+L L    +  +  G+   L  L  LDL +N 
Sbjct: 43  QILYL--HDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN- 98

Query: 66  YLHGSLEGLAN-----LTNLQVLDLSGNQNLTTL--GLANLPNLKTLDLRD 109
                L  L +     L +L+ L +  N+ LT L  G+  L +L  L L  
Sbjct: 99  ----QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQ 144

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 24/137 (17%)

Query: 7   LQVLDLSANYNITSGSLTRLGLA---NLTNLKKLDLDGCGITT------IQGLAKLKNLE 57
           +  LDLSAN  +   S   L         ++  L+L    +              LK+L+
Sbjct: 198 VTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 58  ALDLSSNYYLHGSLEG-------LANLTNLQVLDLSGNQ--NLTTLGLANL-----PNLK 103
            + L  +   + S E          N+  + ++D +G +     ++ ++NL         
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 104 TLDLRDCGITTIQGIQQ 120
              L +  +   Q  Q 
Sbjct: 317 VPSLLNQCLIFAQKHQT 333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 25/136 (18%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLA---NLTNLKKLDLDGCGITT--IQGLAKL-- 53
            +    +  LDLS N N+ S S   L  A      ++  L+L G  +       L ++  
Sbjct: 18  TSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 54  ---KNLEALDLSSNYYLHGSLEGLANL-----TNLQVLDLSGNQNLTTLGLANL------ 99
               N+ +L+LS N+  + S + L          + VLDL  N   ++   +        
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSN 135

Query: 100 --PNLKTLDLRDCGIT 113
              ++ +L+LR   + 
Sbjct: 136 LPASITSLNLRGNDLG 151

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 22/130 (16%)

Query: 7   LQVLDLSANYNITSGSLTRLGLA---NLTNLKKLDLDGCGITTI--QGLAKL-----KNL 56
           +  L+L  N ++   S   L         N+  L+L G  + +     LAK       ++
Sbjct: 140 ITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 57  EALDLSSNYYLHGSLEGLA-----NLTNLQVLDLSGNQ------NLTTLGLANLPNLKTL 105
            +LDLS+N     S   LA        ++  L+L  N           L   +L +L+T+
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 106 DLRDCGITTI 115
            L    +  +
Sbjct: 259 YLDYDIVKNM 268

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 21/131 (16%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKL----- 53
            +    L  ++L+ +  +    L  L L      +KL L    +     + L  L     
Sbjct: 97  GSGRHALDEVNLA-SCQLDPAGLRTL-LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154

Query: 54  KNLEALDLSSNYYLHGSL----EGLANLTNLQVLDLSGNQNLTTLG-------LANLPNL 102
             +  L LS+N      +    EGLA  T++  L L     L   G       L     L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQL 213

Query: 103 KTLDLRDCGIT 113
           + L++   G  
Sbjct: 214 QELNVAYNGAG 224

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 35/138 (25%), Positives = 50/138 (36%), Gaps = 35/138 (25%)

Query: 8   QVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLA--KLKNLEALDLSSNY 65
           + LDL +   + +  L+      LT L  L+LD   + T+       L  L  L L++N 
Sbjct: 38  EKLDLQST-GLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 66  YLHGSLEGLA--NLTNLQVLDLSGNQ-------------NLTTLGLAN------------ 98
               SL      +LT L  L L GNQ              L  L L              
Sbjct: 95  --LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 99  -LPNLKTLDLRDCGITTI 115
            L NL+TL L    + ++
Sbjct: 153 KLTNLQTLSLSTNQLQSV 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRL---------GLANLTNLKKLDLDGCGITTIQGLAKL 53
           NL+   V D      + S               G+  L N++ L L G  +  I  L +L
Sbjct: 25  NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKEL 84

Query: 54  KNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL--GLAN-LPNLKTLDLRD 109
            NL  L L+ N            LTNL+ L L  NQ L +L  G+ + L NL  L+L  
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAH 142

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 32/113 (28%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
           N+  L  L+LS N  +         +    NLK L+L G  + + + L K+K L      
Sbjct: 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL------ 220

Query: 63  SNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG---------LANLPNLKTLD 106
                            L+ L L GN    T               P L  LD
Sbjct: 221 ----------------KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 17/95 (17%)

Query: 32  TNLKKLDLDGCGITTIQGLA---KLKNLEALDLSSNYYLHGSLEGL-----ANLTNLQVL 83
            +  +L L+   +  I       +L +L  L+L  N      L G+        +++Q L
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-----QLTGIEPNAFEGASHIQEL 83

Query: 84  DLSGNQNLTTLG---LANLPNLKTLDLRDCGITTI 115
            L  N+ +  +       L  LKTL+L D  I+ +
Sbjct: 84  QLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCV 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.72
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.66
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.65
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.64
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.64
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.64
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.61
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.6
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.6
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.59
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.59
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.57
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.57
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.56
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.54
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.54
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.53
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.53
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.53
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.52
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.51
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.51
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.49
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.45
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.43
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.42
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.4
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.24
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.22
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.03
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.85
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.4
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.8
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.74
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.0
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.47
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	89.16

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=2.2e-19  Score=109.19  Aligned_cols=119  Identities=23%  Similarity=0.252  Sum_probs=91.8

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |..+++|+.|++++|.  +.+..+ ..+..+++|+.|++++|.++..+  .+..+++|++|++++|.+.+..+..+..++
T Consensus        52 ~~~l~~L~~L~Ls~N~--i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  128 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQ--ISELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH  128 (220)
T ss_dssp             STTCTTCCEEECCSSC--CCEECT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhCCCCCCEEECCCCc--CCCcCH-HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC
Confidence            3567788888888887  663333 66778888888888888888743  356788888888888888877777788888


Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      +|+.|++++|.  .+.+..+..+++|+.+++++|++.+.+.+.++.
T Consensus       129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~  174 (220)
T 2v9t_B          129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLA  174 (220)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHH
Confidence            88888888887  454556777888888899888888887776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=2.8e-19  Score=108.75  Aligned_cols=118  Identities=18%  Similarity=0.224  Sum_probs=95.0

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      ..+++|+.|++++|.  +. .++...+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..|..+..+++
T Consensus        54 ~~l~~L~~L~L~~N~--i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           54 KKLPQLRKINFSNNK--IT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             GGCTTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             ccCCCCCEEECCCCc--CC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            457788888888888  66 34435678888899999999988884  34778889999999999988777788888889


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      |+.|++++|.  .+.+..+..+++|+.+++++|++.+.+.+.++.
T Consensus       131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~  175 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLG  175 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred             CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHH
Confidence            9999999887  444667888889999999999998887766654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.77  E-value=3.9e-18  Score=101.84  Aligned_cols=115  Identities=23%  Similarity=0.267  Sum_probs=100.1

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +++++|++++|.  +. .++ ..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus        31 ~~l~~L~L~~n~--i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           31 RDVTELYLDGNQ--FT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL  106 (193)
T ss_dssp             TTCCEEECCSSC--CC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCc--Cc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence            578999999998  76 667 6788999999999999999985  35889999999999999999777788999999999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~  123 (124)
                      |++++|.  .+.+..+..+++|+.+++++|++.+.+.+.++..
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~  149 (193)
T 2wfh_A          107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSD  149 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred             EECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHH
Confidence            9999998  5545568889999999999999999888777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=9e-18  Score=102.63  Aligned_cols=111  Identities=25%  Similarity=0.226  Sum_probs=66.8

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|++|++++|.  +. .++...+..+++|+.|++++|.++..+  .+..+++|++|++++|.+. ..|..+..+++
T Consensus        61 ~~l~~L~~L~L~~N~--l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  136 (229)
T 3e6j_A           61 DSLINLKELYLGSNQ--LG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH  136 (229)
T ss_dssp             TTCTTCCEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT
T ss_pred             hCccCCcEEECCCCC--CC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC
Confidence            345666666666665  44 333344556666666666666666632  2455666666666666666 44555566666


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      |++|++++|.  .+.+..+..+++|+.+++++|++.+.+
T Consensus       137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            6666666665  343344566667777777777766555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=1.1e-17  Score=103.41  Aligned_cols=112  Identities=25%  Similarity=0.278  Sum_probs=60.5

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|++|++++|.  +.+. ++..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        56 ~~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           56 RGLTKLTWLNLDYNQ--LQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK  132 (251)
T ss_dssp             TTCTTCCEEECTTSC--CCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCcccCCEEECCCCc--CCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence            445666666666666  5432 224455566666666666666552  23445556666666666555443334455555


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      |+.|++++|.  .+.+..+..+++|+.|++++|.+..++
T Consensus       133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            5555555554  332334455555555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=8.8e-18  Score=100.19  Aligned_cols=116  Identities=22%  Similarity=0.188  Sum_probs=97.6

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .++++|++++|.  +.+..+...+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        29 ~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            378999999998  76433323478899999999999999984  47888999999999999999877777889999999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      |++++|.  .+.+..+..+++|+.+++++|++.+.+.+.++.
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~  148 (192)
T 1w8a_A          107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA  148 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred             EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH
Confidence            9999998  343677888999999999999999888766553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=9.4e-17  Score=99.22  Aligned_cols=117  Identities=29%  Similarity=0.314  Sum_probs=81.6

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|+.|++++|.  +. .++...+..+++|+.|++++|.++..+  .+..+++|++|++++|.+.+..+..+..+++
T Consensus        80 ~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           80 DDLTELGTLGLANNQ--LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTCTTCCEEECTTSC--CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccCCcCCEEECCCCc--cc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            456778888888877  65 334356677778888888888777743  3566778888888888777555556777778


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc-cccccc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI-QGIQQF  121 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~l  121 (124)
                      |++|++++|.  .+.+..+..+++|+.+++++|++.+. +.+.++
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l  201 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL  201 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHH
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHH
Confidence            8888887776  44344666777788888888887766 444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=5.2e-17  Score=97.15  Aligned_cols=115  Identities=26%  Similarity=0.404  Sum_probs=71.8

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      .+++|+.|++++|.  +. .++  .+..+++|++|++++|.++.  +..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        64 ~l~~L~~L~l~~n~--~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           64 YAHNIKDLTINNIH--AT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             GCTTCSEEEEESCC--CS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             cCCCCCEEEccCCC--CC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            45666666666664  43 222  45566677777777776665  4456666777777777777665556666667777


Q ss_pred             CEEeccCCc-cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165           81 QVLDLSGNQ-NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        81 ~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      ++|++++|. ......+..+++|+.|++++|.+++++.+..++
T Consensus       139 ~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~  181 (197)
T 4ezg_A          139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP  181 (197)
T ss_dssp             CEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCS
T ss_pred             CEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCC
Confidence            777777765 222235666677777777777776665544443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=4.2e-17  Score=93.51  Aligned_cols=112  Identities=32%  Similarity=0.401  Sum_probs=96.1

Q ss_pred             CCCcCcEEeccccccccC-CcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            3 NLRYLQVLDLSANYNITS-GSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      ..+++++|++++|.  +. +.++ ..+..+++++.|++++|.++....+..+++|+++++++|.+.+..|..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~--l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSR--SNEGKLE-GLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCB--CBTTBCC-SCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCc--CChhHHH-HHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            35789999999998  65 4566 56788999999999999999887788899999999999999976777777899999


Q ss_pred             EEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCccc
Q 048165           82 VLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        82 ~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      ++++++|.  .+. +..+..+++|+.+++++|.+++.+.
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            99999998  221 2678899999999999999988765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.72  E-value=5.1e-17  Score=107.56  Aligned_cols=117  Identities=26%  Similarity=0.217  Sum_probs=88.6

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      ..+++|++|++++|.  +.+..+ ..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..|..+..+++
T Consensus       296 ~~l~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  372 (455)
T 3v47_A          296 SHFTDLEQLTLAQNE--INKIDD-NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN  372 (455)
T ss_dssp             TTCTTCCEEECTTSC--CCEECT-TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ccCCCCCEEECCCCc--ccccCh-hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence            457778888888887  663333 5677788888888888888773  35677888888888888888777777888888


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc-cccc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG-IQQF  121 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~l  121 (124)
                      |+++++++|.  .+.+..+..+++|+.+++++|++++.++ +.++
T Consensus       373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            8888888887  4534456788888888888888887764 4443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=4.4e-17  Score=102.26  Aligned_cols=113  Identities=30%  Similarity=0.280  Sum_probs=59.7

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      ++++|++|++++|.  +. .++...+..+++|+.|++++|.++..+  .+..+++|+.+++++|.+.+..|..+..+++|
T Consensus       127 ~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  203 (285)
T 1ozn_A          127 GLAALQYLYLQDNA--LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (285)
T ss_dssp             TCTTCCEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCcCCCEEECCCCc--cc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence            34445555555554  33 222233444555555555555555422  24455555555555555554445555556666


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGI  118 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  118 (124)
                      +.+++++|.  .+.+..+..+++|+.+++++|++.+.+.+
T Consensus       204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            666666665  33234455666666666666666655544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=1.1e-16  Score=99.87  Aligned_cols=110  Identities=26%  Similarity=0.288  Sum_probs=50.5

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|++|++++|.  +. .++...+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        82 ~~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  158 (270)
T 2o6q_A           82 KELKNLETLWVTDNK--LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS  158 (270)
T ss_dssp             SSCTTCCEEECCSSC--CC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCCCCEEECCCCc--CC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence            345556666666655  44 22323444555555555555555542  12344455555555555444333333444444


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      |+.+++++|.  .+.+..+..+++|+.|++++|.++.
T Consensus       159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            4444444443  2222233344444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=2.7e-16  Score=98.20  Aligned_cols=111  Identities=32%  Similarity=0.316  Sum_probs=51.3

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      .+++|++|++++|.  +.+ ++...+..+++|++|++++|.++..+  .+..+++|++|++++|.+.+..+..+..+++|
T Consensus        83 ~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A           83 ELTNLTYLILTGNQ--LQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             TCTTCCEEECTTSC--CCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCc--cCc-cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence            34445555555554  432 22233444555555555555554421  23445555555555555543333334445555


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +.|++++|.  .+.+..+..+++|+.|++++|.+.+.+
T Consensus       160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            555555554  222223344455555555555554433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=2.5e-16  Score=95.73  Aligned_cols=110  Identities=24%  Similarity=0.296  Sum_probs=94.9

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +++++|++++|.  +. .++...+..+++|+.|++++|.++..  ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus        32 ~~l~~L~l~~n~--i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNT--IK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSC--CC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCc--CC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence            478999999998  76 45546788999999999999999984  57889999999999999999665566788999999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      |++++|.  .+.+..+..+++|+.|++++|.++.++.
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            9999998  5556778899999999999999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=8.3e-17  Score=94.70  Aligned_cols=115  Identities=25%  Similarity=0.197  Sum_probs=94.6

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .+++++|++++|.  +. .++...+..+++|+.|++++|.++..+  .+..+++|+++++++|.+.+..+..+..+++|+
T Consensus        27 ~~~l~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           27 PSSATRLELESNK--LQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK  103 (177)
T ss_dssp             CTTCSEEECCSSC--CC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEeCCCc--cc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence            4678999999998  76 445466788999999999999998853  467899999999999999966666678899999


Q ss_pred             EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc-cccc
Q 048165           82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG-IQQF  121 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~l  121 (124)
                      ++++++|.  .+.+..+..+++|+.+++++|++.+.+. +.++
T Consensus       104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l  146 (177)
T 2o6r_A          104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  146 (177)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred             EEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHH
Confidence            99999998  5544456789999999999999987664 4443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.71  E-value=5.2e-17  Score=110.85  Aligned_cols=121  Identities=26%  Similarity=0.337  Sum_probs=100.0

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      ..++.++.+++++|.  ....+.+..+..+++|++|++++|+++..  ..+..+++|++|++++|.+.+..+..+..+++
T Consensus       466 ~~~~~L~~L~Ls~N~--~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  543 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  543 (635)
T ss_dssp             TTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred             ccchhhhhhhhhhcc--cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence            456788889998886  33233336788899999999999999984  46888999999999999999777788899999


Q ss_pred             CCEEeccCCc--cCChhhhcCC-CCCCEEeeeccCCCCcccccccccC
Q 048165           80 LQVLDLSGNQ--NLTTLGLANL-PNLKTLDLRDCGITTIQGIQQFTSY  124 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~l~~~  124 (124)
                      |++|++++|.  .+.+..+..+ .+|+.|++++|++.+.+.+.++..|
T Consensus       544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~w  591 (635)
T 4g8a_A          544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW  591 (635)
T ss_dssp             CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence            9999999998  5546677777 5899999999999999987776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=3.5e-16  Score=94.15  Aligned_cols=109  Identities=27%  Similarity=0.237  Sum_probs=54.2

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      ++++|++|++++|.  +. .++...+..+++|++|++++|.++..+  .+..+++|+++++++|.+.+..+..+..+++|
T Consensus        50 ~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           50 ELTSLTQLYLGGNK--LQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TCTTCSEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccCcEEECCCCc--cC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence            44555555555554  43 223233445555555555555555422  23455555555555555553333334455555


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      +++++++|.  .+.+..+..+++|+.+++++|++..
T Consensus       127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            555555554  2322334455555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=1.7e-16  Score=94.92  Aligned_cols=114  Identities=25%  Similarity=0.400  Sum_probs=98.8

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      +++++.|++++|.  +. .++  .+..+++|+.|++++|.++.++.+..+++|+++++++|.+.+..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~--i~-~l~--~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANIN--VT-DLT--GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSC--CS-CCT--TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCC--cc-ChH--HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            5689999999998  76 455  478899999999999998888889999999999999999997778889999999999


Q ss_pred             eccCCc--cCChhhhcCCCCCCEEeeeccC-CCCcccccccc
Q 048165           84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCG-ITTIQGIQQFT  122 (124)
Q Consensus        84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~l~  122 (124)
                      ++++|.  ...+..+..+++|+.|++++|. +.+++.+..++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~  159 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP  159 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCS
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCC
Confidence            999997  2226778999999999999998 88887665554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=1.4e-16  Score=92.94  Aligned_cols=111  Identities=32%  Similarity=0.411  Sum_probs=66.0

Q ss_pred             CCcCcEEeccccccccC-CcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITS-GSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .+++++|++++|.  +. +.++ ..+..+++|+.|++++|.++....+..+++|+++++++|.+.+..|..+..+++|++
T Consensus        23 ~~~L~~L~l~~n~--l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCK--SNDGKIE-GLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCB--CBTTBCS-SCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCC--CChhhHH-HHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3556667776666  43 3444 345566666666666666666555556666666666666666444444445666666


Q ss_pred             EeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCccc
Q 048165           83 LDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        83 l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      |++++|.  .+. ...+..+++|+.|++++|+++..+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            6666665  221 1455566666666666666665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=5.1e-16  Score=96.87  Aligned_cols=113  Identities=25%  Similarity=0.251  Sum_probs=79.0

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|+.|++++|.  +. .++...+..+++|++|++++|.++..+  .+..+++|++|++++|.+.+..+..+..+++
T Consensus        58 ~~l~~L~~L~l~~n~--l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  134 (270)
T 2o6q_A           58 HRLTKLRLLYLNDNK--LQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK  134 (270)
T ss_dssp             SSCTTCCEEECCSSC--CS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCCCCEEECCCCc--cC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence            456777777777776  55 344345566777777777777777632  4566777888888877777665566777788


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      |++|++++|.  .+.+..+..+++|+.|++++|.+..++.
T Consensus       135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            8888888776  4434446777888888888887776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=1.6e-16  Score=100.17  Aligned_cols=107  Identities=33%  Similarity=0.288  Sum_probs=46.7

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      +++|+.|++++|.  +. .++ ..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        76 l~~L~~L~Ls~N~--l~-~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           76 LPVLGTLDLSHNQ--LQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             CTTCCEEECCSSC--CS-SCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCcCCEEECCCCc--CC-cCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence            4445555555554  33 333 2334444555555555544442  1344444455555555444433333334444444


Q ss_pred             EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165           82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      .|++++|.  .+.+..+..+++|+.|++++|.++.
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence            44444444  2222223334444444444444433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=105.93  Aligned_cols=115  Identities=22%  Similarity=0.243  Sum_probs=69.9

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      ++++|+.|++++|.  +. .++  .+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus       183 ~l~~L~~L~L~~n~--l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  257 (440)
T 3zyj_A          183 GLSNLRYLNLAMCN--LR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL  257 (440)
T ss_dssp             TCSSCCEEECTTSC--CS-SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred             cccccCeecCCCCc--Cc-ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence            34555555555554  43 233  244555566666666655552  345556666666666666665555666666777


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      +.|++++|.  .+.+..+..+++|+.+++++|++.+.+.+.++.
T Consensus       258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~  301 (440)
T 3zyj_A          258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLS  301 (440)
T ss_dssp             CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHH
T ss_pred             CEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHH
Confidence            777777776  443445566777777777777777777666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=6e-16  Score=94.56  Aligned_cols=110  Identities=25%  Similarity=0.252  Sum_probs=94.8

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .++++.|++++|.  +.+..+ ..+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus        39 ~~~L~~L~Ls~n~--i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  115 (229)
T 3e6j_A           39 PTNAQILYLHDNQ--ITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK  115 (229)
T ss_dssp             CTTCSEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCEEEcCCCc--cCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence            3579999999998  774444 67889999999999999998853  468899999999999999966666778999999


Q ss_pred             EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      .|++++|.  .+ +..+..+++|+.|++++|.+..++.
T Consensus       116 ~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A          116 ELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             EEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             eEeccCCccccc-CcccccCCCCCEEECCCCcCCccCH
Confidence            99999998  55 6778899999999999999998763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.69  E-value=7.2e-16  Score=96.30  Aligned_cols=113  Identities=28%  Similarity=0.240  Sum_probs=96.0

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.++++|++|++++|.  +.+ ++...+..+++|+.|++++|.++..+  .+..+++|+++++++|.+.+..+..+..++
T Consensus       105 ~~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  181 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQ--LQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT  181 (272)
T ss_dssp             TTTCTTCCEEECTTSC--CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hcCCcCCCEEECCCCc--CCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence            4578999999999998  774 44366788999999999999999853  467899999999999999977667788999


Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +|+++++++|.  .+.+..+..+++|+.+++++|++.+.+
T Consensus       182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence            99999999998  454556788999999999999987654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=1.2e-15  Score=91.86  Aligned_cols=111  Identities=29%  Similarity=0.300  Sum_probs=93.6

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .++++.|++++|.  +. .++...+..+++|++|++++|.++..+  .+..+++|+++++++|.+.+..+..+..+++|+
T Consensus        27 ~~~l~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           27 PAQTTYLDLETNS--LK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             CTTCSEEECCSSC--CC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEcCCCc--cC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence            4579999999998  76 445466788999999999999999853  467899999999999999966666678999999


Q ss_pred             EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      ++++++|.  .+.+..+..+++|+.|++++|.+++++.
T Consensus       104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A          104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence            99999997  5545557889999999999999987764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.68  E-value=3.9e-16  Score=106.54  Aligned_cols=110  Identities=25%  Similarity=0.286  Sum_probs=51.2

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|++|++++|.  +. .+++..|..+++|++|++++|+++..  ..+..+++|++|++++|.+.+..+..++.+++
T Consensus        73 ~~l~~L~~L~Ls~N~--i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~  149 (635)
T 4g8a_A           73 FSFPELQVLDLSRCE--IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  149 (635)
T ss_dssp             TTCTTCCEEECTTCC--CC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             hCCCCCCEEECCCCc--CC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence            344455555555554  43 23323444455555555555554442  13444555555555555554333334445555


Q ss_pred             CCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCC
Q 048165           80 LQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        80 L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      |++|++++|.  .+. +..+..++.|++|++++|.+++
T Consensus       150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             cCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            5555555544  111 3334445555555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=1.7e-16  Score=100.48  Aligned_cols=113  Identities=27%  Similarity=0.347  Sum_probs=56.1

Q ss_pred             CCCcCcEEeccccccccCC-cccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            3 NLRYLQVLDLSANYNITSG-SLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      ++++|++|++++|.  +.+ ..+ ..+..+++|+.|++++|.++..  ..+..+++|+++++++|.+.+..+..+..+++
T Consensus       148 ~l~~L~~L~l~~n~--l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          148 GLSSLEVLKMAGNS--FQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             TCTTCCEEECTTCE--EGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             cCcCCCEEECCCCc--cccccch-hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence            34445555555554  332 122 3444555555555555555542  23445555555555555555443344455555


Q ss_pred             CCEEeccCCc--cCChhhhcCCC-CCCEEeeeccCCCCcccc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLP-NLKTLDLRDCGITTIQGI  118 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~  118 (124)
                      |+.+++++|.  ...+..+..++ +|+.+++++|++.+.+.+
T Consensus       225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            5555555554  22233444443 566666666666555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.68  E-value=2.4e-16  Score=104.60  Aligned_cols=114  Identities=21%  Similarity=0.206  Sum_probs=63.9

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      ++++|+.|++++|.  +. .++  .+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus       194 ~l~~L~~L~L~~n~--l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          194 GLFNLKYLNLGMCN--IK-DMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL  268 (452)
T ss_dssp             TCTTCCEEECTTSC--CS-SCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCc--cc-ccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence            34445555555554  33 222  244455555555555555552  245555666666666666655555556666666


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQF  121 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l  121 (124)
                      +.|++++|.  .+.+..+..+++|+.+++++|++.+.+.+.++
T Consensus       269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l  311 (452)
T 3zyi_A          269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWL  311 (452)
T ss_dssp             CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred             CEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHH
Confidence            666666665  33334455666677777777777666665554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=1e-15  Score=96.04  Aligned_cols=112  Identities=24%  Similarity=0.238  Sum_probs=57.6

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      ..+++|++|++++|.  +.+..+ ..+..+++|++|++++|. ++..  ..+..+++|+++++++|.+.+..+..+..++
T Consensus        53 ~~~~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  129 (285)
T 1ozn_A           53 RACRNLTILWLHSNV--LARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA  129 (285)
T ss_dssp             TTCTTCCEEECCSSC--CCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             ccCCCCCEEECCCCc--cceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence            345556666666665  442222 445555566666666554 4442  2444555555555555555544444455555


Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +|+++++++|.  .+.+..+..+++|+.|++++|.+..++
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            55555555554  232233445555555555555554433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=1.2e-15  Score=92.70  Aligned_cols=110  Identities=23%  Similarity=0.249  Sum_probs=93.9

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      ..+++|++++|.  +.+..+...+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        32 ~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  109 (220)
T 2v70_A           32 QYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT  109 (220)
T ss_dssp             TTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred             CCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence            357889999998  76443434578899999999999999985  36889999999999999999777778899999999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      |++++|.  .+.+..+..+++|+.|++++|.++.++
T Consensus       110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A          110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred             EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence            9999998  554677889999999999999998874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.68  E-value=5.5e-16  Score=90.81  Aligned_cols=111  Identities=24%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      ..++++++++.  +. .+|. .+  .++++.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        10 ~~~~l~~s~n~--l~-~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           10 SGTTVDCSGKS--LA-SVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             ETTEEECTTSC--CS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEeCCCC--cC-ccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            36789999998  76 5663 33  37899999999999995  358889999999999999997666677899999999


Q ss_pred             eccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc-ccccc
Q 048165           84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG-IQQFT  122 (124)
Q Consensus        84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~l~  122 (124)
                      ++++|.  .+.+..+..+++|+.|++++|++.+.+. +.++.
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~  125 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLS  125 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence            999998  5645568899999999999999998874 55544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=3.2e-16  Score=106.98  Aligned_cols=117  Identities=28%  Similarity=0.320  Sum_probs=71.0

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      ++++|+.|++++|.  +.+......+..+++|+.|++++|.++..  ..+..+++|+++++++|.+.+..|..+..+++|
T Consensus       446 ~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          446 GLTSLNTLKMAGNS--FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             TCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred             CCCCCCEEECCCCc--CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence            45556666666665  44321114455666666666666666652  345566677777777776666556666666777


Q ss_pred             CEEeccCCc--cCChhhhcCCC-CCCEEeeeccCCCCcccccccc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLP-NLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      +.+++++|.  .+ +..+..++ +|+.+++++|++.+.+.+.++.
T Consensus       524 ~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~  567 (606)
T 3vq2_A          524 STLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVACICEHQKFL  567 (606)
T ss_dssp             CEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCCSSTTHHHH
T ss_pred             CEEECCCCcCccc-CHhHhhhcccCcEEEccCCCcccCCccHHHH
Confidence            777777766  34 33455555 4777777777777666655443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.67  E-value=1.1e-15  Score=101.02  Aligned_cols=118  Identities=26%  Similarity=0.354  Sum_probs=83.8

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.++++|+.|++++|.  +. .++...+..+++|+.|++++|.++..+  .+..+++|++|++++|.+....+..+..++
T Consensus        84 ~~~l~~L~~L~Ls~n~--i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  160 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNH--IR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP  160 (440)
T ss_dssp             TSSCSSCCEEECCSSC--CC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred             hhCCCCCCEEECCCCc--CC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence            4567788888888887  65 334356777888888888888887742  467778888888888887755555677777


Q ss_pred             CCCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCCCccccccc
Q 048165           79 NLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITTIQGIQQF  121 (124)
Q Consensus        79 ~L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l  121 (124)
                      +|++|++++|.   .+.+..+..+++|+.|++++|.++.++.+..+
T Consensus       161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l  206 (440)
T 3zyj_A          161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL  206 (440)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTC
T ss_pred             ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCC
Confidence            88888887754   34344566777777888777777776654443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=2.8e-16  Score=92.45  Aligned_cols=109  Identities=22%  Similarity=0.189  Sum_probs=86.7

Q ss_pred             CCCcCcEEeccccccccCCccccccccccc-CccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLT-NLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .+.++++|++++|.  +. .++ . +..+. +|+.|++++|.++....+..+++|+++++++|.+.+..+..+..+++|+
T Consensus        17 ~~~~L~~L~l~~n~--l~-~i~-~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           17 NAVRDRELDLRGYK--IP-VIE-N-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             CTTSCEEEECTTSC--CC-SCC-C-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CcCCceEEEeeCCC--Cc-hhH-H-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            57788999999998  66 444 3 44444 8999999999998887788889999999999998855434457888999


Q ss_pred             EEeccCCc--cCChh--hhcCCCCCCEEeeeccCCCCccc
Q 048165           82 VLDLSGNQ--NLTTL--GLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        82 ~l~l~~~~--~~~~~--~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      ++++++|.  .+ +.  .+..+++|+.+++++|++...+.
T Consensus        92 ~L~L~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           92 ELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             EEECCSCCCCCG-GGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             EEECCCCcCCcc-hhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence            99999997  44 33  67788999999999999887765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=1.2e-15  Score=98.73  Aligned_cols=111  Identities=28%  Similarity=0.319  Sum_probs=74.6

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      ++++|+.|++++|.  +. .++...+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+....+..+..+++|
T Consensus        62 ~l~~L~~L~L~~N~--i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           62 RLTNLHSLLLSHNH--LN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL  138 (361)
T ss_dssp             CCTTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cccccCEEECCCCc--CC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence            56777777777776  55 33335566777777777777777763  246667777777777777776666667777777


Q ss_pred             CEEeccCCc--cCChhhh---cCCCCCCEEeeeccCCCCcc
Q 048165           81 QVLDLSGNQ--NLTTLGL---ANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~---~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +.|++++|.  .+....+   ..+++|+.|++++|.++.++
T Consensus       139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            777777776  4423333   45677777777777777655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=3e-15  Score=94.42  Aligned_cols=91  Identities=35%  Similarity=0.459  Sum_probs=44.1

Q ss_pred             cccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEee
Q 048165           28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL  107 (124)
Q Consensus        28 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l  107 (124)
                      +..+++|+.|++++|.++..+.+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.......+..+++|+.|++
T Consensus       108 l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L  185 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL  185 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEEC
Confidence            344444445555544444444444445555555555554422  334455555555555554111112555556666666


Q ss_pred             eccCCCCcccccc
Q 048165          108 RDCGITTIQGIQQ  120 (124)
Q Consensus       108 ~~n~~~~~~~~~~  120 (124)
                      ++|.+++++.+..
T Consensus       186 ~~N~i~~l~~l~~  198 (291)
T 1h6t_A          186 SKNHISDLRALAG  198 (291)
T ss_dssp             CSSCCCBCGGGTT
T ss_pred             CCCcCCCChhhcc
Confidence            6665555544433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.66  E-value=1.6e-15  Score=100.58  Aligned_cols=117  Identities=25%  Similarity=0.282  Sum_probs=76.0

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.++++|+.|++++|.  +.+ ++...+..+++|+.|++++|.++..+  .+..+++|++|++++|.+....+..+..++
T Consensus        95 ~~~l~~L~~L~Ls~n~--i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  171 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNS--IRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP  171 (452)
T ss_dssp             TTTCTTCCEEECCSSC--CCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             cCCCCCCCEEECCCCc--cCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence            3456777777777776  553 33356667777777777777777632  366677777777777777654445566667


Q ss_pred             CCCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165           79 NLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITTIQGIQQ  120 (124)
Q Consensus        79 ~L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  120 (124)
                      +|+.|++++|.   .+....+..+++|+.|++++|.+++++.+..
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  216 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP  216 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTT
T ss_pred             cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccc
Confidence            77777776643   3333446667777777777777776665443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.66  E-value=1.2e-15  Score=89.66  Aligned_cols=110  Identities=23%  Similarity=0.223  Sum_probs=90.0

Q ss_pred             CcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165            7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD   84 (124)
Q Consensus         7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   84 (124)
                      -+.++++++.  +. .+|. .+  .++++.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        14 ~~~l~~~~n~--l~-~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           14 QTLVNCQNIR--LA-SVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SSEEECCSSC--CS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcEEEeCCCC--CC-ccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence            3678899988  65 5663 33  37899999999999985  3688899999999999999966555678899999999


Q ss_pred             ccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc-ccccc
Q 048165           85 LSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG-IQQFT  122 (124)
Q Consensus        85 l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~l~  122 (124)
                      +++|.  .+.+..+..+++|+.|++++|++...+. +.++.
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~  128 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR  128 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence            99998  5644558899999999999999998874 55544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.65  E-value=3.1e-15  Score=94.33  Aligned_cols=115  Identities=29%  Similarity=0.218  Sum_probs=67.2

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|+.|++++|.  +. .+++..+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+....+..+..+++
T Consensus        97 ~~l~~L~~L~l~~N~--l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  173 (290)
T 1p9a_G           97 QTLPALTVLDVSFNR--LT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (290)
T ss_dssp             TTCTTCCEEECCSSC--CC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             ccCCCCCEEECCCCc--Cc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence            345666666666666  54 333345566666666666666666532  3455666666666666666433334455666


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQ  120 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  120 (124)
                      |+++++++|.  .+ +..+.....|+.+++++|++.+.+.+.+
T Consensus       174 L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C~c~~~~  215 (290)
T 1p9a_G          174 LDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLCNCEILY  215 (290)
T ss_dssp             CCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred             CCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccCcCccHH
Confidence            6666666665  34 4445555566666666666666555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.65  E-value=9.4e-16  Score=98.14  Aligned_cols=107  Identities=31%  Similarity=0.370  Sum_probs=86.7

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      ++++|++|++++|.  +. .++ ..+..+++|+.|++++|.++.. +.+..+++|++|++++|.+.+..|..++.+++|+
T Consensus       181 ~l~~L~~L~L~~n~--l~-~lp-~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          181 GLVNLQSLRLEWTG--IR-SLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             ESTTCCEEEEEEEC--CC-CCC-GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             cCCCCCEEECcCCC--cC-cch-HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence            37788888888887  65 566 4577888899999999988884 5678888999999999888878888888889999


Q ss_pred             EEeccCCc---cCChhhhcCCCCCCEEeeeccCCCC
Q 048165           82 VLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        82 ~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      .|++++|.   .+ +..+..+++|+.|++++|.+.+
T Consensus       257 ~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          257 RLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             EEECTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCC
T ss_pred             EEECCCCCchhhc-chhhhcCCCCCEEeCCCCCchh
Confidence            99998876   44 6678888999999999977543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.65  E-value=2.3e-15  Score=94.06  Aligned_cols=112  Identities=26%  Similarity=0.288  Sum_probs=70.2

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|++|++++|.  +. .++...+..+++|++|++++|.++..  ..+..+++|+++++++|.+.+..+..+..+++
T Consensus        49 ~~l~~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           49 FSFPELQVLDLSRCE--IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             TTCTTCSEEECTTCC--CC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             ccccCCcEEECCCCc--CC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence            455666667776665  54 33324556666677777777766653  34566667777777776666444445666677


Q ss_pred             CCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCcc
Q 048165           80 LQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        80 L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      |++|++++|.  .+. +..+..+++|+.|++++|.+.+++
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            7777777765  221 556667777777777777766543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=2.3e-15  Score=87.78  Aligned_cols=111  Identities=33%  Similarity=0.290  Sum_probs=93.0

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hh-hhccCCCCCEEEccCccccccc-hhcccCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQ-GLAKLKNLEALDLSSNYYLHGS-LEGLANLT   78 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~-~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~   78 (124)
                      ..+++|+.|++++|.  +.+.   ..+..+++|+.|++++|.++. ++ .+..+++|+++++++|.+.+.. +..+..++
T Consensus        46 ~~l~~L~~L~l~~n~--l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  120 (168)
T 2ell_A           46 AEFVNLEFLSLINVG--LISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE  120 (168)
T ss_dssp             GGGGGCCEEEEESSC--CCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred             HhCCCCCEEeCcCCC--CCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence            467899999999998  7643   467889999999999999998 54 4556999999999999998542 26788999


Q ss_pred             CCCEEeccCCc--cCCh---hhhcCCCCCCEEeeeccCCCCccc
Q 048165           79 NLQVLDLSGNQ--NLTT---LGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~---~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +|+++++++|.  .+.+   ..+..+++|+.|++++|.+.+.+.
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            99999999998  4422   378899999999999999988774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=4.9e-15  Score=93.41  Aligned_cols=113  Identities=32%  Similarity=0.352  Sum_probs=82.5

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      ..+++|+.|++++|.  +. .++ . +..+++|+.|++++|.++.++.+..+++|++|++++|.+.+.  ..+..+++|+
T Consensus        65 ~~l~~L~~L~L~~n~--l~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~  137 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNK--LT-DIK-P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  137 (291)
T ss_dssp             GGCTTCCEEECCSSC--CC-CCG-G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred             hcCCCCCEEEccCCc--cC-CCc-c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence            346778888888887  65 334 2 677888888888888888777777888888888888887743  4566778888


Q ss_pred             EEeccCCccCChhhhcCCCCCCEEeeeccCCCCccccccc
Q 048165           82 VLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQF  121 (124)
Q Consensus        82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l  121 (124)
                      .|++++|.......+..+++|+.|++++|.+.+.+.+..+
T Consensus       138 ~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l  177 (291)
T 1h6t_A          138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL  177 (291)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             EEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCC
Confidence            8888888722235677888888888888888877654443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.64  E-value=9.7e-16  Score=98.09  Aligned_cols=108  Identities=29%  Similarity=0.363  Sum_probs=59.9

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccC------
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLAN------   76 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~------   76 (124)
                      +++|+.|++++|.  +. .++ ..+..+++|++|++++|.++.. ..+..+++|++|++++|...+..|..+..      
T Consensus       103 l~~L~~L~L~~n~--l~-~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          103 LSHLQHMTIDAAG--LM-ELP-DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GTTCSEEEEESSC--CC-CCC-SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             CCCCCEEECCCCC--cc-chh-HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            4556666666665  44 444 3455666666666666666553 35555666666666665544444443332      


Q ss_pred             ---CCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           77 ---LTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        77 ---~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                         +++|++|++++|.  .+ +..+..+++|+.|++++|.+..++
T Consensus       179 ~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~l~  222 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALG  222 (328)
T ss_dssp             EEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCCCC
T ss_pred             hccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCcCc
Confidence               5555555555554  33 344555566666666666655543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.64  E-value=7e-15  Score=93.38  Aligned_cols=14  Identities=36%  Similarity=0.643  Sum_probs=5.3

Q ss_pred             CCCCEEeeeccCCC
Q 048165          100 PNLKTLDLRDCGIT  113 (124)
Q Consensus       100 ~~L~~l~l~~n~~~  113 (124)
                      ++|+.|++++|.+.
T Consensus       195 ~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          195 PNLIEVHLKNNQIS  208 (308)
T ss_dssp             TTCCEEECTTSCCC
T ss_pred             CCCCEEEccCCccC
Confidence            33333333333333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.64  E-value=7.6e-15  Score=93.19  Aligned_cols=112  Identities=38%  Similarity=0.421  Sum_probs=72.6

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      ..+++|++|++++|.  +.+ ++  .+..+++|+.|++++|.++..+.+..+++|++|++++|.+.+..+  +..+++|+
T Consensus        82 ~~l~~L~~L~L~~n~--l~~-~~--~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~  154 (308)
T 1h6u_A           82 KNLTKITELELSGNP--LKN-VS--AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQ  154 (308)
T ss_dssp             TTCCSCCEEECCSCC--CSC-CG--GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred             ccCCCCCEEEccCCc--CCC-ch--hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCcc
Confidence            456777777777776  552 33  456677777777777777776566677777777777777664322  56667777


Q ss_pred             EEeccCCccCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165           82 VLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQ  120 (124)
Q Consensus        82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  120 (124)
                      .|++++|.......+..+++|+.|++++|.+++++.+..
T Consensus       155 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~  193 (308)
T 1h6u_A          155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS  193 (308)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             EEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcC
Confidence            777777761112226667777777777777766655433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.63  E-value=3.3e-15  Score=94.53  Aligned_cols=111  Identities=31%  Similarity=0.324  Sum_probs=71.1

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc---hhhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT---IQGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      ..+++|+.|++++|.  +.+..+ ..+..+++|+.|++++|.++.   +..+..+++|+++++++|.+.+..|..+..++
T Consensus       123 ~~l~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  199 (306)
T 2z66_A          123 LSLRNLIYLDISHTH--TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  199 (306)
T ss_dssp             TTCTTCCEEECTTSC--CEECST-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhccCCCEEECCCCc--CCccch-hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence            345566666666665  442323 445566677777777776654   23556667777777777777765566666777


Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      +|+.+++++|.  .+.+..+..+++|+.|++++|.+.+.
T Consensus       200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            77777777776  33344566677777777777777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.63  E-value=4.9e-15  Score=98.07  Aligned_cols=110  Identities=30%  Similarity=0.353  Sum_probs=96.0

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      ++++.+++++|.  +.+..+ ..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus       275 ~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          275 SGVKTCDLSKSK--IFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             SCCCEEECCSSC--CCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             cCceEEEecCcc--ccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence            679999999998  764445 6788999999999999999984  47888999999999999998777888999999999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      |++++|.  .+.+..+..+++|+.|++++|.+++++.
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence            9999998  4446778899999999999999998774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.63  E-value=4e-15  Score=101.56  Aligned_cols=113  Identities=27%  Similarity=0.249  Sum_probs=75.0

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |+++++|++|++++|.  +.+ +++..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..+..++.++
T Consensus        52 ~~~l~~L~~L~Ls~n~--l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  128 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCE--IET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI  128 (606)
T ss_dssp             TTTCTTCCEEECTTCC--CCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred             ccCCccCcEEeCCCCc--ccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence            3456777777777776  553 3325566777777777777777663  3566777777777777777655555667777


Q ss_pred             CCCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCcc
Q 048165           79 NLQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +|++|++++|.  .+. +..+..+++|++|++++|.+...+
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence            77777777776  212 556777777777777777776543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=7.9e-15  Score=100.51  Aligned_cols=91  Identities=35%  Similarity=0.459  Sum_probs=45.9

Q ss_pred             cccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEee
Q 048165           28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL  107 (124)
Q Consensus        28 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l  107 (124)
                      +..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.......+..+++|+.|++
T Consensus       105 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~L  182 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL  182 (605)
T ss_dssp             STTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             hccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEEC
Confidence            344445555555555554444444555555555555555432  344455556666665554111112555566666666


Q ss_pred             eccCCCCcccccc
Q 048165          108 RDCGITTIQGIQQ  120 (124)
Q Consensus       108 ~~n~~~~~~~~~~  120 (124)
                      ++|.+++++.+..
T Consensus       183 s~N~i~~l~~l~~  195 (605)
T 1m9s_A          183 SKNHISDLRALAG  195 (605)
T ss_dssp             CSSCCCBCGGGTT
T ss_pred             cCCCCCCChHHcc
Confidence            6666655544433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.62  E-value=5.4e-15  Score=98.55  Aligned_cols=113  Identities=28%  Similarity=0.376  Sum_probs=66.6

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.++++|++|++++|.  +.+..+ ..+..+++|++|++++|.++..+  .+..+++|++|++++|.+.+..+..+..++
T Consensus        52 ~~~l~~L~~L~L~~n~--i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           52 FASFPHLEELELNENI--VSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TTTCTTCCEEECTTSC--CCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             ccCCCCCCEEECCCCc--cCEeCh-hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence            3456666777776666  543223 45666666777777666666632  345666666666666666655555566666


Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +|++|++++|.  .+.+..+..+++|+.|++++|.+..++
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            66666666664  232344555566666666666555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=1.1e-14  Score=90.56  Aligned_cols=105  Identities=30%  Similarity=0.400  Sum_probs=47.8

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      +++|+.|++++|.  +. .++ . +..+++|+.|++++|.++..+.+.. ++|++|++++|.+.+.  ..+..+++|+.|
T Consensus        62 l~~L~~L~L~~N~--i~-~~~-~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L  133 (263)
T 1xeu_A           62 FTNLKELHLSHNQ--IS-DLS-P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEIL  133 (263)
T ss_dssp             CTTCCEEECCSSC--CC-CCG-G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred             CCCCCEEECCCCc--cC-CCh-h-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCC--hhhcCcccccEE
Confidence            3444445555444  33 222 1 4444445555555554444332222 4444444444444421  234455555555


Q ss_pred             eccCCccCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           84 DLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      ++++|.......+..+++|+.|++++|.+++..
T Consensus       134 ~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~  166 (263)
T 1xeu_A          134 SIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG  166 (263)
T ss_dssp             ECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCT
T ss_pred             ECCCCcCCCChHHccCCCCCEEECCCCcCcchH
Confidence            555554111124455555555555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=9.9e-15  Score=93.69  Aligned_cols=113  Identities=32%  Similarity=0.382  Sum_probs=83.9

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .+++|+.|++++|.  +. .++  .+..+++|+.|++++|.++..+.+..+++|+++++++|.+.+.  ..+..+++|+.
T Consensus       219 ~~~~L~~L~l~~n~--l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~  291 (347)
T 4fmz_A          219 NMTRLNSLKIGNNK--IT-DLS--PLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS  291 (347)
T ss_dssp             GCTTCCEEECCSSC--CC-CCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             cCCcCCEEEccCCc--cC-CCc--chhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence            46677788888877  55 333  2667788888888888887777777788888888888877743  34667788888


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      +++++|.  ...+..+..+++|+.+++++|++++.+.+..++
T Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~  333 (347)
T 4fmz_A          292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLS  333 (347)
T ss_dssp             EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCT
T ss_pred             EECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhh
Confidence            8888887  343566778888888888888888876655444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=2.5e-15  Score=101.76  Aligned_cols=113  Identities=26%  Similarity=0.258  Sum_probs=77.2

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc---hhhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT---IQGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      .++++|+.|++++|.  +.+..+ ..+..+++|+.|++++|.++.   +..+..+++|+++++++|.+.+..|..+..++
T Consensus       418 ~~l~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          418 LSLRNLIYLDISHTH--TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             TTCTTCCEEECTTSC--CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hcCCCCCEEeCcCCc--ccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence            345666666666665  443333 456667777777777777652   34566677778888887777766677777777


Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +|+++++++|.  .+.+..+..+++|+.+++++|++++.+.
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            88888887776  4434556777788888888888776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.61  E-value=1.8e-15  Score=96.23  Aligned_cols=106  Identities=23%  Similarity=0.325  Sum_probs=46.8

Q ss_pred             CCcCcEEeccc-cccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            4 LRYLQVLDLSA-NYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         4 ~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      +++|++|++++ |.  +.+.++ ..+..+++|++|++++|.++.  +..+..+++|+++++++|.+.+..|..+..+++|
T Consensus        75 l~~L~~L~L~~~n~--l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           75 LPYLNFLYIGGINN--LVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             CTTCSEEEEEEETT--EESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             CCCCCeeeCCCCCc--ccccCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence            44444444442 33  332333 334444445555554444442  2234444445555555444444444444444444


Q ss_pred             CEEeccCCc---cCChhhhcCCC-CCCEEeeeccCCC
Q 048165           81 QVLDLSGNQ---NLTTLGLANLP-NLKTLDLRDCGIT  113 (124)
Q Consensus        81 ~~l~l~~~~---~~~~~~~~~~~-~L~~l~l~~n~~~  113 (124)
                      ++|++++|.   .+ +..+..++ .|+.+++++|.+.
T Consensus       152 ~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          152 VGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEE
T ss_pred             CeEECcCCcccCcC-CHHHhhhhhcCcEEECcCCeee
Confidence            444444443   12 33344443 4444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.61  E-value=7.4e-15  Score=95.72  Aligned_cols=110  Identities=18%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      .+++|++|++++|.  +. .++...+..+++|+.|++++|.++..  ..+..+++|++|++++|.+....+..+..+++|
T Consensus        67 ~l~~L~~L~L~~n~--i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           67 SFRQVELLNLNDLQ--IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             HCCCCSEEECTTSC--CC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccCcEEECCCCc--cc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence            35667777777776  55 33334566777777777777777663  245667777777777777764333335667777


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      ++|++++|.  .+.+..+..+++|+.|++++|.+..+
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            777777776  34344566777777777777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.61  E-value=8.8e-15  Score=94.71  Aligned_cols=110  Identities=30%  Similarity=0.290  Sum_probs=94.1

Q ss_pred             CcCcEEeccccccccCCcccccccc-cccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLA-NLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      +.++.|++++|.  +. .++...+. .+++|+.|++++|.++..  ..+..+++|++|++++|.+....+..+..+++|+
T Consensus        39 ~~l~~L~Ls~N~--l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNN--LS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSC--CC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCC--CC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            347899999998  77 44435666 899999999999999985  3688999999999999999977667788999999


Q ss_pred             EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      .|++++|.  .+.+..+..+++|+.|++++|.++.++.
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence            99999998  4546778899999999999999998764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.60  E-value=1.1e-14  Score=93.56  Aligned_cols=109  Identities=32%  Similarity=0.383  Sum_probs=91.3

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      +..+++|++|++++|.  +.+ ++  .+..+++|+.|++++|.++..+.+..+++|+.+++++|.+.+..+..+..+++|
T Consensus       239 ~~~l~~L~~L~l~~n~--l~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQ--ISD-IN--AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             GTTCTTCCEEECCSSC--CCC-CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             hhcCCCCCEEECCCCc--cCC-Ch--hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence            3578999999999998  663 33  578899999999999999998888899999999999999998888889999999


Q ss_pred             CEEeccCCccCChhhhcCCCCCCEEeeeccCCCC
Q 048165           81 QVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        81 ~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      +.+++++|.......+..+++|+.+++++|++++
T Consensus       314 ~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          314 TTLFLSQNHITDIRPLASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             SEEECCSSSCCCCGGGGGCTTCSEESSSCC----
T ss_pred             CEEEccCCccccccChhhhhccceeehhhhcccC
Confidence            9999999982222338889999999999999863

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.60  E-value=7.1e-15  Score=93.51  Aligned_cols=82  Identities=18%  Similarity=0.254  Sum_probs=33.0

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCC-CC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLT-NL   80 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L   80 (124)
                      +++|+.|++++|.  +.+.++ ..+..+++|++|++++|.++.  +..+..+++|+++++++|.+.+..|..++.+. +|
T Consensus       100 l~~L~~L~Ls~n~--l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A          100 LTQLHYLYITHTN--VSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             CTTCSEEEEEEEC--CEEECC-GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             CCCCCEEECcCCe--eCCcCC-HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence            3444444444444  332333 233444444444444444442  12333444444444444444333333333333 33


Q ss_pred             CEEeccCC
Q 048165           81 QVLDLSGN   88 (124)
Q Consensus        81 ~~l~l~~~   88 (124)
                      +.+++++|
T Consensus       177 ~~L~L~~N  184 (313)
T 1ogq_A          177 TSMTISRN  184 (313)
T ss_dssp             CEEECCSS
T ss_pred             cEEECcCC
Confidence            33333333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.60  E-value=5.3e-15  Score=99.43  Aligned_cols=115  Identities=21%  Similarity=0.151  Sum_probs=57.6

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      +++|+.|++++|.  +.+.++...+..+++|+.|++++|.++........++|+.+++++|.+. ..|..+..+++|+++
T Consensus       373 l~~L~~L~Ls~N~--l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          373 MKSLQQLDISQNS--VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             CTTCCEEECCSSC--CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCc--CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence            3444444444444  3322332223344444444444444433110000145666666666655 445545566667777


Q ss_pred             eccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccc
Q 048165           84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQF  121 (124)
Q Consensus        84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l  121 (124)
                      ++++|.  .+....+..+++|+.+++++|++++.+.+.++
T Consensus       450 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             ECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence            776665  34222355666777777777777666554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=1.1e-14  Score=90.69  Aligned_cols=112  Identities=27%  Similarity=0.305  Sum_probs=92.1

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .+++|+.|++++|.  +. .++  .+..+++|+.|++++|.++..+.+..+++|++|++++|.+.+. +. +.. ++|+.
T Consensus        39 ~l~~L~~L~l~~n~--i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~  110 (263)
T 1xeu_A           39 ELSGVQNFNGDNSN--IQ-SLA--GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSR  110 (263)
T ss_dssp             HHTTCSEEECTTSC--CC-CCT--TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCE
T ss_pred             hcCcCcEEECcCCC--cc-cch--HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc-Cc-ccc-CcccE
Confidence            46789999999998  66 445  5788999999999999999976688999999999999999853 33 233 89999


Q ss_pred             EeccCCccCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165           83 LDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      |++++|.......+..+++|+.|++++|.+++++.+..+.
T Consensus       111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~  150 (263)
T 1xeu_A          111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLS  150 (263)
T ss_dssp             EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCT
T ss_pred             EEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCC
Confidence            9999998222446889999999999999999887665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.59  E-value=1.3e-14  Score=99.12  Aligned_cols=110  Identities=21%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|++|++++|.  +.+..+ ..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        54 ~~l~~L~~L~Ls~n~--i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           54 SRLINLTFLDLTRCQ--IYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             TTCTTCSEEECTTCC--CCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             ccCccceEEECCCCc--cceeCh-hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence            344555555555554  332222 3444555555555555554442  23444555555555555554433444445555


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      |++|++++|.  .+....+..+++|+.|++++|.+..
T Consensus       131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A          131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             ccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            5555555554  2212233334555555555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.59  E-value=1.9e-14  Score=98.61  Aligned_cols=114  Identities=32%  Similarity=0.355  Sum_probs=89.2

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      ..+++|+.|++++|.  +.+ ++  .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+.  ..+..+++|+
T Consensus        62 ~~l~~L~~L~Ls~N~--l~~-~~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  134 (605)
T 1m9s_A           62 QYLPNVTKLFLNGNK--LTD-IK--PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  134 (605)
T ss_dssp             GGCTTCCEEECTTSC--CCC-CG--GGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred             ccCCCCCEEEeeCCC--CCC-Ch--hhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence            457888889998887  663 34  2678888999999999888877888888999999999988743  4577888999


Q ss_pred             EEeccCCccCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165           82 VLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        82 ~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      .|++++|.......+..+++|+.|++++|.+.+.+.+..+.
T Consensus       135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~  175 (605)
T 1m9s_A          135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT  175 (605)
T ss_dssp             EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             EEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCC
Confidence            99999887222357788899999999999988776554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.59  E-value=5.4e-15  Score=93.85  Aligned_cols=113  Identities=27%  Similarity=0.274  Sum_probs=63.0

Q ss_pred             CCCcCcEEeccccccccCCc--cc-ccccccccCccEEeccCCCCcchhh-----hccCCCCCEEEccCccccccchhcc
Q 048165            3 NLRYLQVLDLSANYNITSGS--LT-RLGLANLTNLKKLDLDGCGITTIQG-----LAKLKNLEALDLSSNYYLHGSLEGL   74 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~--~~-~~~~~~~~~l~~L~l~~~~l~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~~   74 (124)
                      .+++|++|++++|.  +.+.  ++ ...+..+++|++|++++|.++..+.     +..+++|++|++++|.+.+..|..+
T Consensus       167 ~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          167 AFPALTSLDLSDNP--GLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CCTTCCEEECCSCT--TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             cCCCCCEEECCCCC--CccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            45555555555554  2211  11 1112345556666666666654321     3456677777777777765555555


Q ss_pred             cCC---CCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165           75 ANL---TNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQ  120 (124)
Q Consensus        75 ~~~---~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  120 (124)
                      ..+   ++|++|++++|.  .+ +..+  .++|+.|++++|.+++++....
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~~~~~~  292 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRAPQPDE  292 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSCCCTTS
T ss_pred             HhccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCCchhhh
Confidence            544   577777777776  33 2222  2577777777777776654433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=1.5e-14  Score=97.96  Aligned_cols=112  Identities=26%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.++++|++|++++|.  +. .++...+..+++|++|++++|.++..  ..+..+++|+++++++|.+....+..++.++
T Consensus        48 ~~~l~~L~~L~Ls~n~--i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  124 (570)
T 2z63_A           48 FFSFPELQVLDLSRCE--IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  124 (570)
T ss_dssp             TTTCSSCCEEECTTCC--CC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred             hhCCCCceEEECCCCc--CC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence            3456677777777776  55 23334566677777777777776663  3566677777777777776644334566777


Q ss_pred             CCCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCc
Q 048165           79 NLQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      +|++|++++|.  .+. +..+..+++|++|++++|.+...
T Consensus       125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             cccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            77777777775  211 55667777777777777776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.59  E-value=2e-14  Score=95.82  Aligned_cols=113  Identities=28%  Similarity=0.349  Sum_probs=94.0

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.++++|+.|++++|.  +. .++...+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..++
T Consensus        76 ~~~l~~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  152 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNR--LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN  152 (477)
T ss_dssp             TTTCTTCCEEECCSSC--CC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred             hhCCccCCEEECCCCc--CC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence            4678899999999998  76 45546678899999999999998883  4678889999999999999877778888999


Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +|+.|++.+|.  .+.+..+..+++|+.|++++|.+...+
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            99999999887  554556788889999999888877654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=6.7e-15  Score=102.69  Aligned_cols=109  Identities=24%  Similarity=0.266  Sum_probs=93.7

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      ..++.|+.|++++|.  +. .++ ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+. ..|..++.+.+|
T Consensus       221 ~~l~~L~~L~Ls~n~--l~-~l~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ--IF-NIS-ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             -CCCCCCEEECTTSC--CS-CCC-GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             ccCCCCcEEECCCCC--CC-CCC-hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            457889999999998  66 566 3455899999999999999874 57889999999999999999 778889999999


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      ++|++++|.  .+ |..+..+++|+.|++++|.++...
T Consensus       296 ~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          296 KYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             SEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHH
T ss_pred             CEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCC
Confidence            999999997  56 666899999999999999998643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.58  E-value=3.2e-14  Score=88.85  Aligned_cols=108  Identities=28%  Similarity=0.329  Sum_probs=92.2

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +++++|++++|.  +. .++...+..+++|++|++++|.++..  ..+..+++|+++++++|.+.+..+..+..+++|++
T Consensus        28 ~~l~~L~ls~n~--l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNP--LR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCC--CC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCc--cc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence            359999999998  76 44435788899999999999999884  36888999999999999999777788899999999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      +++.+|.  .+.+..+..+++|+.|++++|.+..+
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  139 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  139 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCcccee
Confidence            9999997  44344688899999999999999873

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=1.8e-14  Score=101.03  Aligned_cols=107  Identities=33%  Similarity=0.329  Sum_probs=48.2

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      +++|+.|++++|.  +.+.++ ..+..+++|+.|++++|.+++  +..+..+++|+++++++|.+.+..|..+..+++|+
T Consensus       417 l~~L~~L~Ls~N~--l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          417 CSELVSLHLSFNY--LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             CTTCCEEECCSSE--EESCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             CCCCCEEECcCCc--ccCccc-HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            4445555555554  333333 334444444444444444443  22344444444444444444444444444444444


Q ss_pred             EEeccCCc--cCChhhhcCCCCCCEEeeeccCCC
Q 048165           82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~  113 (124)
                      .+++++|.  ...|..++.+++|+.|++++|.++
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence            55444444  111334444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=1.2e-14  Score=99.48  Aligned_cols=110  Identities=18%  Similarity=0.210  Sum_probs=74.9

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      ++++|+.|++++|.  +.+ ++...+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..++.+++|
T Consensus        73 ~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           73 SFRQVELLNLNDLQ--IEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             HCCCCSEEECTTSC--CCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCcEEECCCCC--CCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            35677777777776  553 3325667777777777777777773  245677777777777777774444445677777


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      ++|++++|.  .+.+..+..+++|+.|++++|.+..+
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            777777776  44345567777777777777777654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.57  E-value=2.4e-14  Score=97.77  Aligned_cols=108  Identities=24%  Similarity=0.284  Sum_probs=94.4

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +.+++|++++|.  +.+ +++..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..|..++.+++|++
T Consensus        33 ~~l~~L~Ls~n~--i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           33 NSTECLEFSFNV--LPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TTCCEEECTTCC--CSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             CcCcEEEccCCc--cCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            468999999998  774 4437889999999999999999883  46889999999999999999888889999999999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      |++++|.  .+.+..+..+++|++|++++|.+.++
T Consensus       110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A          110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred             eeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence            9999997  44456788999999999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.57  E-value=1.6e-14  Score=101.28  Aligned_cols=108  Identities=30%  Similarity=0.313  Sum_probs=97.7

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++++|+.|++++|.  +.+.++ ..+..+++|++|++++|.+++  +..+..+++|+++++++|.+.+..|..++.+++
T Consensus       439 ~~l~~L~~L~L~~n~--l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  515 (768)
T 3rgz_A          439 GSLSKLRDLKLWLNM--LEGEIP-QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN  515 (768)
T ss_dssp             GGCTTCCEEECCSSC--CCSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             hcCCCCCEEECCCCc--ccCcCC-HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence            467899999999999  776777 678899999999999999986  457889999999999999999999999999999


Q ss_pred             CCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCC
Q 048165           80 LQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        80 L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~  113 (124)
                      |+++++++|.   .+ |..+..+++|+.+++++|+++
T Consensus       516 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          516 LAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCEEECCSSCCEEEC-CGGGGGCTTCCEEECCSSEEE
T ss_pred             CCEEECCCCcccCcC-CHHHcCCCCCCEEECCCCccC
Confidence            9999999998   44 788999999999999999987

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=9.5e-14  Score=82.80  Aligned_cols=104  Identities=28%  Similarity=0.353  Sum_probs=88.4

Q ss_pred             cEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEEecc
Q 048165            8 QVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS   86 (124)
Q Consensus         8 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   86 (124)
                      +.++.+++.  +. .+|. .+  .++++.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus        13 ~~l~~~~~~--l~-~ip~-~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKG--LK-VLPK-GI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSC--CS-SCCS-CC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCC--CC-cCCC-CC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            567888887  66 5662 22  36899999999999985 578889999999999999997777889999999999999


Q ss_pred             CCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           87 GNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        87 ~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +|.  .+.+..+..+++|+.|++++|.++.++.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~  119 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE  119 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence            998  5656678899999999999999998774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.57  E-value=2.6e-14  Score=98.76  Aligned_cols=95  Identities=23%  Similarity=0.280  Sum_probs=49.7

Q ss_pred             cccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhc-CCCCCCE
Q 048165           30 NLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLA-NLPNLKT  104 (124)
Q Consensus        30 ~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~-~~~~L~~  104 (124)
                      .+++|+.|++++|.++..+  .+..+++|+.+++++|.+++..+..+..+++|+.+++++|.  .+.+..+. .+++|+.
T Consensus       534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~  613 (680)
T 1ziw_A          534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE  613 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE
T ss_pred             CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCE
Confidence            3444444444444444422  24445555555555555553333344455566666666655  33233343 4566777


Q ss_pred             EeeeccCCCCcccc-cccccC
Q 048165          105 LDLRDCGITTIQGI-QQFTSY  124 (124)
Q Consensus       105 l~l~~n~~~~~~~~-~~l~~~  124 (124)
                      +++++|++.+.+.. .++..|
T Consensus       614 l~l~~N~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          614 LDMRFNPFDCTCESIAWFVNW  634 (680)
T ss_dssp             EECTTCCCCBCCCCCSSEECC
T ss_pred             EEccCCCcccCCccHHHHHHH
Confidence            77777777766653 555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.57  E-value=1.4e-14  Score=100.13  Aligned_cols=108  Identities=28%  Similarity=0.202  Sum_probs=46.9

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      +++|++|++++|.  +.+..+ ..+..+++|++|++++|.++..+  .+..+++|+++++++|.+.+..+..++.+++|+
T Consensus        48 l~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           48 YSQLTSLDVGFNT--ISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GTTCSEEECCSSC--CCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             CCcCcEEECCCCc--cCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            3444444444444  332222 33444444444444444444422  244444455555554444433333444444555


Q ss_pred             EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCC
Q 048165           82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      ++++++|.  .+.+..+..+++|++|++++|.++.
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            55554443  2212333444444444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.57  E-value=2.7e-14  Score=93.05  Aligned_cols=110  Identities=21%  Similarity=0.235  Sum_probs=94.9

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      +++++.++++++.  +. .++...+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        44 l~~l~~l~l~~~~--l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKNST--MR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GCCCSEEEEESCE--ES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCceEEEecCCc--hh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            5788999999998  66 56656678899999999999999884  4788999999999999999977778889999999


Q ss_pred             EEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           82 VLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +|++++|.  .+....+..+++|++|++++|.+...+
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            99999998  553444688999999999999998765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.56  E-value=3.4e-15  Score=95.10  Aligned_cols=107  Identities=24%  Similarity=0.264  Sum_probs=59.0

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhh-ccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGL-AKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      +++|+.|++++|.  +.+ ++...+..+++|+.|++++|.++..  ..+ ..+++|+++++++|.+.+. + ....+++|
T Consensus       119 ~~~L~~L~l~~N~--l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L  193 (317)
T 3o53_A          119 GQGKKNIYLANNK--ITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKL  193 (317)
T ss_dssp             CSSCEEEECCSSC--CCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTC
T ss_pred             cCCCCEEECCCCC--CCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccC
Confidence            4566667777766  553 2324555666666666666666652  222 2456666666666665533 1 22235566


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +++++++|.  .+ +..+..+++|+.|++++|.++.++
T Consensus       194 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          194 KTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             CEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             CEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchh
Confidence            666666665  33 233555556666666666555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=2.4e-14  Score=81.92  Aligned_cols=103  Identities=30%  Similarity=0.312  Sum_probs=85.3

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-hh-hhccCCCCCEEEccCcccccc-chhcccCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-IQ-GLAKLKNLEALDLSSNYYLHG-SLEGLANL   77 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~   77 (124)
                      +..+++|+.|++++|.  +.+.   ..+..+++|+.|++++|.++. .+ .+..+++|+++++++|.+.+. .+..+..+
T Consensus        38 ~~~l~~L~~L~l~~n~--l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l  112 (149)
T 2je0_A           38 TDEFEELEFLSTINVG--LTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL  112 (149)
T ss_dssp             CTTCTTCCEEECTTSC--CCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred             HhhcCCCcEEECcCCC--CCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence            3578999999999998  7643   467889999999999999998 54 455699999999999999863 34778899


Q ss_pred             CCCCEEeccCCc--cCCh---hhhcCCCCCCEEeee
Q 048165           78 TNLQVLDLSGNQ--NLTT---LGLANLPNLKTLDLR  108 (124)
Q Consensus        78 ~~L~~l~l~~~~--~~~~---~~~~~~~~L~~l~l~  108 (124)
                      ++|+++++++|.  .+.+   ..+..+++|+.++++
T Consensus       113 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          113 ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999999998  4422   367889999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=3.8e-14  Score=100.21  Aligned_cols=113  Identities=31%  Similarity=0.385  Sum_probs=69.5

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhc--ccC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEG--LAN   76 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~   76 (124)
                      |.++++|+.|++++|.  ..+.+++..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..+..  +..
T Consensus        44 ~~~l~~L~~LdLs~n~--~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQY--TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             CSSCCSCSEEEECTTC--CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             CcccccCeEEeCCCCC--CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            3456666666666664  33344335566677777777777766662  35666777777777777666544433  566


Q ss_pred             CCCCCEEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCc
Q 048165           77 LTNLQVLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        77 ~~~L~~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      +++|++|++++|.  .+. +..++.+++|+.|++++|.+...
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            6777777777765  221 23566677777777777766543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.56  E-value=2.1e-14  Score=92.55  Aligned_cols=109  Identities=23%  Similarity=0.284  Sum_probs=52.0

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccch-hcccCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSL-EGLANLTN   79 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~   79 (124)
                      ++++|+.|++++|.  +.+ ++...+..+++|++|++++|.++..+  .+..+++|+++++++|.+..... ..+..+++
T Consensus        74 ~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           74 RCVNLQALVLTSNG--INT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TCTTCCEEECTTSC--CCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             cCCCCCEEECCCCc--cCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            44555555555554  432 22134445555555555555555421  24455555555555555542222 23445555


Q ss_pred             CCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCCC
Q 048165           80 LQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        80 L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      |+++++++|.   .+.+..+..+++|+.+++++|.+.+
T Consensus       151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            5555555542   2223344445555555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.56  E-value=1.1e-13  Score=92.18  Aligned_cols=108  Identities=33%  Similarity=0.343  Sum_probs=50.9

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .+++|+.|++++|.  +.+ ++  .+..+++|+.|++++|.++..+.+..+++|+.+++++|.+.+..+  +..+++|+.
T Consensus       263 ~l~~L~~L~l~~n~--l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          263 GLTKLTELKLGANQ--ISN-IS--PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TCTTCSEEECCSSC--CCC-CG--GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             cCCCCCEEECCCCc--cCc-cc--cccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            34444445554444  331 22  134455555555555555544334455555555555555543322  344455555


Q ss_pred             EeccCCccCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           83 LDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +++.+|.......+..+++|+.+++++|.+++...
T Consensus       336 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             eECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence            55555541112344455555555555555554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.55  E-value=4.6e-14  Score=90.17  Aligned_cols=83  Identities=34%  Similarity=0.416  Sum_probs=44.5

Q ss_pred             CccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeee
Q 048165           33 NLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLR  108 (124)
Q Consensus        33 ~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~  108 (124)
                      +|+.|++++|.++..  ..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.  .+ +..+..+++|+.++++
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECC
Confidence            344444444444432  244455566666666666554444455555666666666665  33 3445555666666666


Q ss_pred             ccCCCCcc
Q 048165          109 DCGITTIQ  116 (124)
Q Consensus       109 ~n~~~~~~  116 (124)
                      +|.++.++
T Consensus       272 ~N~i~~~~  279 (330)
T 1xku_A          272 NNNISAIG  279 (330)
T ss_dssp             SSCCCCCC
T ss_pred             CCcCCccC
Confidence            66665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=6e-14  Score=95.60  Aligned_cols=105  Identities=30%  Similarity=0.361  Sum_probs=92.3

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD   84 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   84 (124)
                      .|+.|++++|.  +. .+| . +..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+ .| .++.+++|+.|+
T Consensus       442 ~L~~L~Ls~n~--l~-~lp-~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          442 DVRVLHLAHKD--LT-VLC-H-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL  514 (567)
T ss_dssp             TCSEEECTTSC--CS-SCC-C-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred             CceEEEecCCC--CC-CCc-C-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence            57899999998  77 466 3 88999999999999999984 588899999999999999995 56 788999999999


Q ss_pred             ccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCccc
Q 048165           85 LSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        85 l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +++|.  .+. |..+..+++|+.|++++|++++.+.
T Consensus       515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            99998  443 6789999999999999999988764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.55  E-value=4.3e-14  Score=95.99  Aligned_cols=66  Identities=21%  Similarity=0.224  Sum_probs=38.9

Q ss_pred             CCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccc
Q 048165           54 KNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQ  120 (124)
Q Consensus        54 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  120 (124)
                      ++|+++++++|.+. ..|..+..+++|+.+++++|.  .+.+..+..+++|+.+++++|++.+.+.+.+
T Consensus       450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  517 (562)
T 3a79_B          450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR  517 (562)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred             CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence            45666666666655 444444466666777776666  4422225666667777777777666554433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.55  E-value=5.2e-15  Score=101.87  Aligned_cols=113  Identities=16%  Similarity=0.214  Sum_probs=82.5

Q ss_pred             CCCCcCcEEeccccccccCCc-----------------ccccccc--cccCccEEeccCCCCcc--hhhhccCCCCCEEE
Q 048165            2 ANLRYLQVLDLSANYNITSGS-----------------LTRLGLA--NLTNLKKLDLDGCGITT--IQGLAKLKNLEALD   60 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~-----------------~~~~~~~--~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~   60 (124)
                      .++++|++|++++|.  +.+.                 +| ..+.  .+++|++|++++|.+.+  +..+..+++|++|+
T Consensus       203 ~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          203 MRLTKLRQFYMGNSP--FVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGCTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             hcccCCCEEECcCCc--cccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            457788888888887  6653                 56 4566  78888888888887666  35677788888888


Q ss_pred             ccCcc-ccc-cchhcccCC------CCCCEEeccCCc--cCChh--hhcCCCCCCEEeeeccCCC-Ccccc
Q 048165           61 LSSNY-YLH-GSLEGLANL------TNLQVLDLSGNQ--NLTTL--GLANLPNLKTLDLRDCGIT-TIQGI  118 (124)
Q Consensus        61 l~~~~-~~~-~~~~~~~~~------~~L~~l~l~~~~--~~~~~--~~~~~~~L~~l~l~~n~~~-~~~~~  118 (124)
                      +++|. +.+ ..|..++.+      ++|++|++++|.  .+ +.  .+..+++|+.|++++|.+. .++.+
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip~~  349 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGKLPAF  349 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEECCCC
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccchhhh
Confidence            88887 776 567666554      788888888876  44 44  6777888888888888777 55533

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=8.7e-14  Score=82.85  Aligned_cols=104  Identities=21%  Similarity=0.268  Sum_probs=87.1

Q ss_pred             CcEEeccccccccCCcccccccccccCccEEeccCCCCcchh---hhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      .+.++++++.  +. .+|. .+.  .+++.|++++|.++..+   .+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        10 ~~~l~~s~~~--l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A           10 GTTVDCTGRG--LK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TTEEECTTSC--CS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCEEEcCCCC--cC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence            4678999988  65 5663 332  38999999999998853   37899999999999999998888899999999999


Q ss_pred             eccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      ++++|.  .+.+..+..+++|+.|++++|.++...
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  118 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM  118 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC
Confidence            999998  443556888999999999999998763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=3.7e-14  Score=91.16  Aligned_cols=110  Identities=19%  Similarity=0.185  Sum_probs=90.5

Q ss_pred             cEEecccc-ccccCCcccccccccccCccEEeccC-CCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            8 QVLDLSAN-YNITSGSLTRLGLANLTNLKKLDLDG-CGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         8 ~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~L~l~~-~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      ..++.+++ .  +. .+| . +..+++|+.|++++ |.++..  ..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus        11 ~~v~~~~~n~--l~-~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGA--LD-SLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             SCEECCSSCC--CT-TTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CEEEcCCCCC--CC-ccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            34677776 6  65 577 4 88899999999996 999984  368899999999999999998888889999999999


Q ss_pred             eccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165           84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus        84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~  123 (124)
                      ++++|.  .+.+..+..++ |+.|++.+|++.+.+.+.++..
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~  126 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQR  126 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHH
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHH
Confidence            999998  55344445555 9999999999999888776643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.54  E-value=2.4e-14  Score=91.00  Aligned_cols=109  Identities=30%  Similarity=0.345  Sum_probs=57.1

Q ss_pred             CCCcCcEEeccccccccCCccccccc-ccccCccEEeccCCCCcch-hhhccC-----CCCCEEEccCccccccchhccc
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGL-ANLTNLKKLDLDGCGITTI-QGLAKL-----KNLEALDLSSNYYLHGSLEGLA   75 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~l~~~-~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~   75 (124)
                      ++++|++|++++|.  +.+..+...+ ..+++|+.|++++|.++.. ..+..+     ++|++|++++|.+.+..+..++
T Consensus        93 ~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLE--VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEB--CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             CcCCccEEEccCCc--ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence            35666666666666  5544442221 5566666666666666552 222222     5566666666665544445555


Q ss_pred             CCCCCCEEeccCCccCC----hhhh--cCCCCCCEEeeeccCCC
Q 048165           76 NLTNLQVLDLSGNQNLT----TLGL--ANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        76 ~~~~L~~l~l~~~~~~~----~~~~--~~~~~L~~l~l~~n~~~  113 (124)
                      .+++|++|++++|....    +..+  ..+++|+.|++++|.+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            55566666665554110    1122  44455555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=8e-14  Score=95.38  Aligned_cols=110  Identities=22%  Similarity=0.192  Sum_probs=86.3

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |..+++|+.|++++|.  +.+ +++..+..+++|+.|++++|.++..+  .+..+++|++|++++|.+.+..|..+..++
T Consensus        95 ~~~l~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  171 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNA--IRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT  171 (597)
T ss_dssp             TTTCTTCCEEECCSSC--CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             hcCCCCCCEEECCCCc--CCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence            4678899999999998  774 44367889999999999999999853  367899999999999999988788899999


Q ss_pred             CCCEEeccCCccCChhhhcCCCCCCEEeeeccCCCC
Q 048165           79 NLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        79 ~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      +|++|++++|... ...+..+++|+.+++++|.+..
T Consensus       172 ~L~~L~L~~N~l~-~~~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          172 SLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             TCCEEECTTSCCS-BCCGGGCTTCSEEECCSSCCSE
T ss_pred             cCcEEECcCCCCC-CcChhhhhhhhhhhcccCcccc
Confidence            9999999999711 1234445556555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.54  E-value=1.3e-13  Score=88.03  Aligned_cols=109  Identities=24%  Similarity=0.272  Sum_probs=53.9

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh-hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      ++++|+.|++++|.  +.+..+ ..+..+++|++|++++|.++..+ .+  .++|+++++++|.+.+..+..+..+++|+
T Consensus        74 ~l~~L~~L~L~~n~--l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           74 NLKNLHTLILINNK--ISKISP-GAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TCTTCCEEECCSSC--CCCBCT-TTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             cCCCCCEEECCCCc--CCeeCH-HHhcCCCCCCEEECCCCcCCccChhh--cccccEEECCCCcccccCHhHhcCCcccc
Confidence            44555555555554  432222 34445555555555555544422 11  13455555555555444444455566666


Q ss_pred             EEeccCCcc----CChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           82 VLDLSGNQN----LTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        82 ~l~l~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      .+++++|..    +.+..+..+++|+.+++++|.+..++
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence            666666541    22344555666666666666555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.54  E-value=1.1e-13  Score=93.17  Aligned_cols=112  Identities=21%  Similarity=0.292  Sum_probs=71.5

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch----hhhccCCCCCEEEccCccccccchhc-ccC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI----QGLAKLKNLEALDLSSNYYLHGSLEG-LAN   76 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~   76 (124)
                      ..+++|+.|++++|.  +.+..+ ..+..+++|+.|++++|.++..    ..+..+++|+++++++|.+.+..|.. +..
T Consensus       321 ~~l~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~  397 (520)
T 2z7x_B          321 SKISPFLHLDFSNNL--LTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW  397 (520)
T ss_dssp             SSCCCCCEEECCSSC--CCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred             hhCCcccEEEeECCc--cChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence            456778888888887  665455 5667788888888888887762    24667777888888887777534432 444


Q ss_pred             CCCCCEEe----------------------ccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           77 LTNLQVLD----------------------LSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        77 ~~~L~~l~----------------------l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +++|++++                      +++|.  .+ +..+..+++|+.+++++|.++.++.
T Consensus       398 l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~  461 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPD  461 (520)
T ss_dssp             CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred             CccCCEEECcCCCCCcchhhhhcccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCH
Confidence            44455554                      44444  33 3334466666666666666666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.53  E-value=3.6e-14  Score=95.89  Aligned_cols=103  Identities=35%  Similarity=0.340  Sum_probs=50.5

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      ++++|++++|.  +.+..+ ..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..+..++.+++|++|
T Consensus        27 ~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           27 AMKSLDLSFNK--ITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TCCEEECCSSC--CCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred             CccEEECcCCc--cCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence            45555555555  442222 3445555555555555555552  234455555555555555554444445555555555


Q ss_pred             eccCCc--cCC-hhhhcCCCCCCEEeeeccC
Q 048165           84 DLSGNQ--NLT-TLGLANLPNLKTLDLRDCG  111 (124)
Q Consensus        84 ~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~  111 (124)
                      ++++|.  .+. +..+..+++|++|++++|.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            555554  111 2234444555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.53  E-value=2.8e-14  Score=87.44  Aligned_cols=85  Identities=21%  Similarity=0.317  Sum_probs=34.2

Q ss_pred             cccccCccEEeccC-CCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC---EEeccCC-c--cCChhhhcC
Q 048165           28 LANLTNLKKLDLDG-CGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ---VLDLSGN-Q--NLTTLGLAN   98 (124)
Q Consensus        28 ~~~~~~l~~L~l~~-~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~--~~~~~~~~~   98 (124)
                      +..+++|+.|++++ |.++..  ..+..+++|+++++++|.+.+ .|. +..+++++   ++++++| .  .+.+..+..
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence            34444444444444 444432  123344444444444444432 222 33333333   4444444 2  222223344


Q ss_pred             CCCCC-EEeeeccCCCC
Q 048165           99 LPNLK-TLDLRDCGITT  114 (124)
Q Consensus        99 ~~~L~-~l~l~~n~~~~  114 (124)
                      +++|+ .+++++|.++.
T Consensus       154 l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             TBSSEEEEECCSCCCCE
T ss_pred             hhcceeEEEcCCCCCcc
Confidence            44444 44444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1e-14  Score=103.31  Aligned_cols=86  Identities=20%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             cccCccEEeccCCCCcc--hhhhccCCCCCEEEccCcc-ccc-cchhcccC-------CCCCCEEeccCCc--cCChh--
Q 048165           30 NLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNY-YLH-GSLEGLAN-------LTNLQVLDLSGNQ--NLTTL--   94 (124)
Q Consensus        30 ~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~~-------~~~L~~l~l~~~~--~~~~~--   94 (124)
                      .+++|+.|++++|.+..  +..+..+++|+.|++++|. +.+ ..|..++.       +++|+.|++++|.  .+ |.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CChh
Confidence            56666666666665444  2345556666666666665 544 34443332       2355566555554  33 33  


Q ss_pred             hhcCCCCCCEEeeeccCCCCcc
Q 048165           95 GLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        95 ~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      .+..+++|+.|++++|.+..+|
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~~lp  589 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVRHLE  589 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhcCCCCCEEECCCCCcccch
Confidence            4555555555555555555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.53  E-value=1.5e-14  Score=93.22  Aligned_cols=113  Identities=25%  Similarity=0.288  Sum_probs=76.8

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh---hhccCCCCCEEEccCc-cccccchhcccC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ---GLAKLKNLEALDLSSN-YYLHGSLEGLAN   76 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~-~~~~~~~~~~~~   76 (124)
                      |.++++|++|++++|.  +. .++...+..+++|++|++++|.++..+   .+..+++|+++++++| .+....+..+..
T Consensus        96 ~~~l~~L~~L~Ls~n~--l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNY--LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             TTTCTTCCEEECCSSC--CS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             cCCCCCCCEEECCCCc--CC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            3567788888888887  66 345345777888888888888877743   3667788888888877 355444566777


Q ss_pred             CCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           77 LTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        77 ~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +++|+++++++|.  .+.+..+..+++|++|++++|.+..++
T Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  214 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL  214 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred             CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence            7777777777775  222455566666666666666654433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=1.1e-14  Score=97.57  Aligned_cols=108  Identities=23%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhc-cCCCCCEEEccCccccccchhcccCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLA-KLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .+++|+.|++++|.  +.+..+ ..+..+++|+.|++++|.++.  +..+. .+++|++|++++|.+.+.  .....+++
T Consensus       118 ~l~~L~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~  192 (487)
T 3oja_A          118 RGQGKKNIYLANNK--ITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAK  192 (487)
T ss_dssp             CCSSCEEEECCSSC--CCSGGG-BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTT
T ss_pred             ccCCCCEEECCCCC--CCCCCc-hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCC
Confidence            35677778888877  664434 556677778888888877776  23443 567777777777777643  22334667


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      |+.|++++|.  .+ +..+..+++|+.|++++|.++.+|
T Consensus       193 L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp  230 (487)
T 3oja_A          193 LKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE  230 (487)
T ss_dssp             CCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             CCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccc
Confidence            7777777776  33 334666677777777777776655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.52  E-value=2.4e-13  Score=90.53  Aligned_cols=91  Identities=29%  Similarity=0.338  Sum_probs=45.9

Q ss_pred             cccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEee
Q 048165           28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL  107 (124)
Q Consensus        28 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l  107 (124)
                      +..+++|+.|++++|.++..+.+..+++|+.+++++|.+.+..+  +..+++|+.+++++|.......+..+++|+.|++
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l  338 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF  338 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEEC
T ss_pred             hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeEC
Confidence            34445555555555555443334445555555555555543222  4455556666666555111122455666666666


Q ss_pred             eccCCCCcccccc
Q 048165          108 RDCGITTIQGIQQ  120 (124)
Q Consensus       108 ~~n~~~~~~~~~~  120 (124)
                      ++|.+.+++.+..
T Consensus       339 ~~n~l~~~~~l~~  351 (466)
T 1o6v_A          339 YNNKVSDVSSLAN  351 (466)
T ss_dssp             CSSCCCCCGGGTT
T ss_pred             CCCccCCchhhcc
Confidence            6666665544433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.51  E-value=1.8e-14  Score=88.35  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=42.2

Q ss_pred             EEeccCC-CCcchh--hhccCCCCC-EEEccCccccccchhcccCCCCCCEEeccCCc---cCChhhhcCC-CCCCEEee
Q 048165           36 KLDLDGC-GITTIQ--GLAKLKNLE-ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ---NLTTLGLANL-PNLKTLDL  107 (124)
Q Consensus        36 ~L~l~~~-~l~~~~--~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~-~~L~~l~l  107 (124)
                      .+++++| .++..+  .+..+++|+ .+++++|.+. ..|.......+|+.+++++|+   .+.+..+..+ ++|+.+++
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence            4444444 444421  244555566 6666666555 222222222556666666662   3333445566 67777777


Q ss_pred             eccCCCCcc
Q 048165          108 RDCGITTIQ  116 (124)
Q Consensus       108 ~~n~~~~~~  116 (124)
                      ++|.++.++
T Consensus       213 ~~N~l~~l~  221 (239)
T 2xwt_C          213 SQTSVTALP  221 (239)
T ss_dssp             TTCCCCCCC
T ss_pred             CCCccccCC
Confidence            777776655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.51  E-value=1.1e-13  Score=93.61  Aligned_cols=112  Identities=25%  Similarity=0.331  Sum_probs=93.2

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch-h-hhccCCCCCEEEccCcccccc-chhcccCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-Q-GLAKLKNLEALDLSSNYYLHG-SLEGLANL   77 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~   77 (124)
                      |.++++|++|++++|.  +.+. ++..+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+. .|..++.+
T Consensus        46 ~~~l~~L~~L~Ls~n~--i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           46 LRACANLQVLILKSSR--INTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             TSSCTTCCEEECTTSC--CCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             hhcCCcccEEECCCCC--cCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence            4678999999999998  7744 436788999999999999999884 3 488999999999999998853 45678899


Q ss_pred             CCCCEEeccCCc---cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           78 TNLQVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        78 ~~L~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      ++|+++++++|.   .+.+..+..+++|++|++++|.+...
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            999999999886   34345788899999999999998763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.49  E-value=1.2e-13  Score=87.69  Aligned_cols=109  Identities=26%  Similarity=0.234  Sum_probs=53.6

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccc-----cCccEEeccCCCCcch--hhhccCCCCCEEEccCcccccc--chh
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANL-----TNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHG--SLE   72 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-----~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~   72 (124)
                      ..+++|++|++++|.  +.+. + ..+..+     ++|++|++++|.++..  ..+..+++|+++++++|.+.+.  .+.
T Consensus       118 ~~l~~L~~L~Ls~N~--l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          118 ATGPDLNILNLRNVS--WATR-D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             CCSCCCSEEEEESCB--CSSS-S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             hcCCCccEEEccCCC--Ccch-h-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            455666666666666  5433 3 333333     5566666666655552  2455555566666665554322  122


Q ss_pred             cc--cCCCCCCEEeccCCc-c-C---ChhhhcCCCCCCEEeeeccCCCC
Q 048165           73 GL--ANLTNLQVLDLSGNQ-N-L---TTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        73 ~~--~~~~~L~~l~l~~~~-~-~---~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      .+  ..+++|++|++++|. . +   ....+..+++|+.|++++|.+.+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            22  445555555555554 1 1   00112244555555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.49  E-value=3.3e-13  Score=86.29  Aligned_cols=103  Identities=22%  Similarity=0.290  Sum_probs=54.2

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      ++++.|++++|.  +. .+++..+..+++|++|++++|.++..  ..+..+++|+++++++|.+. ..|..+.  ++|++
T Consensus        54 ~~l~~L~l~~n~--i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNND--IS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVE  127 (332)
T ss_dssp             TTCCEEECCSSC--CC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCE
T ss_pred             CCCeEEECCCCc--CC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCE
Confidence            355666666665  44 22224455666666666666666552  34555666666666666555 3333222  45555


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCC
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~  113 (124)
                      +++++|.  .+.+..+..+++|+.|++++|.+.
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            5555554  332333455555555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=3e-13  Score=90.69  Aligned_cols=105  Identities=27%  Similarity=0.259  Sum_probs=55.9

Q ss_pred             CCcCcEEeccccccccCCcccccccc-cccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLA-NLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +++|+.|++++|.  +.+..+ ..+. .+++|+.|++++|.++..+....+++|++|++++|.+.+. |..+..+++|+.
T Consensus       143 l~~L~~L~Ls~N~--l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~  218 (487)
T 3oja_A          143 RSRVQYLDLKLNE--IDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTW  218 (487)
T ss_dssp             GSSEEEEECTTSC--CCEEEG-GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSE
T ss_pred             CCCCCEEECCCCC--CCCcCh-HHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCC-CHhHcCCCCccE
Confidence            4555556666665  443333 2222 4556666666666655544444455566666666665533 233555556666


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCC
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~  113 (124)
                      +++++|.  .+ |..+..+++|+.+++++|++.
T Consensus       219 L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          219 ISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EECTTSCCCEE-CTTCCCCTTCCEEECTTCCBC
T ss_pred             EEecCCcCccc-chhhccCCCCCEEEcCCCCCc
Confidence            6666555  33 334455555666666666555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.48  E-value=3.6e-13  Score=95.29  Aligned_cols=110  Identities=30%  Similarity=0.330  Sum_probs=89.1

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      ++++.|++++|.  +.+..+ ..+..+++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus       266 ~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          266 SSVRHLDLSHGF--VFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             SCCCEEECTTCC--CCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             CCccEEECCCCc--ccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence            678899999987  664433 6778889999999999988873  46778889999999999988777778888899999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +++++|.  .+.+..+..+++|+.|++++|.++.++.
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  379 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF  379 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence            9999887  4545567788899999999988877654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.48  E-value=6e-13  Score=90.41  Aligned_cols=104  Identities=28%  Similarity=0.263  Sum_probs=77.0

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +++++|++++|.  +.+ +++..+..+++|++|++++|.++..  ..+..+++|++|++++|.+. ..|..  .+++|++
T Consensus        52 ~~L~~L~Ls~N~--i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~  125 (562)
T 3a79_B           52 PRTKALSLSQNS--ISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH  125 (562)
T ss_dssp             TTCCEEECCSSC--CCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred             CCcCEEECCCCC--ccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence            567888888887  663 3435677888888888888888773  35777888888888888877 44444  6788888


Q ss_pred             EeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCC
Q 048165           83 LDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        83 l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      |++++|.  .+. +..+..+++|++|++++|.+..
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            8888887  332 3577788888888888887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=2.3e-13  Score=92.78  Aligned_cols=102  Identities=26%  Similarity=0.339  Sum_probs=86.5

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccc-hhcccCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGS-LEGLANLTNL   80 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L   80 (124)
                      ..+++|+.|++++|.  +. .+| ..+..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+.. |..++.+++|
T Consensus       460 ~~l~~L~~L~Ls~N~--l~-~lp-~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L  535 (567)
T 1dce_A          460 EQLLLVTHLDLSHNR--LR-ALP-PALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL  535 (567)
T ss_dssp             GGGTTCCEEECCSSC--CC-CCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccccCcEeecCccc--cc-ccc-hhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence            457899999999998  77 677 578999999999999999999888999999999999999999766 8899999999


Q ss_pred             CEEeccCCc--cCCh---hhhcCCCCCCEEee
Q 048165           81 QVLDLSGNQ--NLTT---LGLANLPNLKTLDL  107 (124)
Q Consensus        81 ~~l~l~~~~--~~~~---~~~~~~~~L~~l~l  107 (124)
                      +.|++++|.  .+.+   .....+++|+.|++
T Consensus       536 ~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999997  2211   22345788888864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=1.5e-12  Score=76.45  Aligned_cols=105  Identities=22%  Similarity=0.255  Sum_probs=85.5

Q ss_pred             CcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165            7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD   84 (124)
Q Consensus         7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   84 (124)
                      .+.++.+++.  +. .++. .  ..++++.|++++|.++..+  .+..+++|+++++++|.+.+..+..+..+++|+.++
T Consensus         9 ~~~l~~~~~~--l~-~~p~-~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            9 GTEIRCNSKG--LT-SVPT-G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TTEEECCSSC--CS-SCCT-T--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCCC--Cc-cCCC-C--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            5678888887  65 4452 2  2468999999999998843  467899999999999999966666678999999999


Q ss_pred             ccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           85 LSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        85 l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +++|.  .+.+..+..+++|+.|++++|.++.++.
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  117 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD  117 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence            99998  5545567889999999999999988774

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.48  E-value=5.2e-13  Score=85.02  Aligned_cols=107  Identities=25%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .+++|+.|++++|.  +.+..+......+++|+.|++++|.++..+....+++|+++++++|.+.+. +..+..+++|+.
T Consensus       142 ~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~  218 (317)
T 3o53_A          142 CRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTW  218 (317)
T ss_dssp             GGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSE
T ss_pred             ccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc-hhhhcccCcccE
Confidence            45677888888887  653333222245777888888888877765555577888888888887743 444667778888


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCC
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~  113 (124)
                      +++++|.  .+ +..+..+++|+.+++++|++.
T Consensus       219 L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          219 ISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EECTTSCCCEE-CTTCCCCTTCCEEECTTCCCB
T ss_pred             EECcCCcccch-hhHhhcCCCCCEEEccCCCcc
Confidence            8888876  44 455667778888888888776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=2.1e-13  Score=80.06  Aligned_cols=103  Identities=26%  Similarity=0.321  Sum_probs=86.3

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh-h-hccCCCCCEEEccCccccccchh--cccCCCCC
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-G-LAKLKNLEALDLSSNYYLHGSLE--GLANLTNL   80 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~-~-~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~L   80 (124)
                      ++|+.|++++|.  +.+ +  ..+..+++|+.|++++|.++..+ . +..+++|+++++++|.+. ..|.  .+..+++|
T Consensus        42 ~~L~~L~Ls~N~--l~~-~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L  115 (176)
T 1a9n_A           42 DQFDAIDFSDNE--IRK-L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSL  115 (176)
T ss_dssp             TCCSEEECCSSC--CCE-E--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTC
T ss_pred             CCCCEEECCCCC--CCc-c--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCC
Confidence            489999999998  763 3  36788999999999999999853 3 488999999999999997 4454  78889999


Q ss_pred             CEEeccCCc--cCChh----hhcCCCCCCEEeeeccCCCC
Q 048165           81 QVLDLSGNQ--NLTTL----GLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~----~~~~~~~L~~l~l~~n~~~~  114 (124)
                      +.+++++|.  .+ +.    .+..+++|+.++++.|...+
T Consensus       116 ~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          116 TYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999998  44 44    37889999999999988654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.46  E-value=1.8e-13  Score=86.87  Aligned_cols=109  Identities=18%  Similarity=0.133  Sum_probs=63.0

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc---h---hhhccCCCCCEEEccCccccccchh----c
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT---I---QGLAKLKNLEALDLSSNYYLHGSLE----G   73 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~---~---~~~~~~~~L~~l~l~~~~~~~~~~~----~   73 (124)
                      +++|++|++++|.  +.+..+ ..+..+++|++|++++|++..   .   ..+..+++|++|++++|.++. .+.    .
T Consensus       144 ~~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l  219 (310)
T 4glp_A          144 KPGLKVLSIAQAH--SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL  219 (310)
T ss_dssp             CSCCCEEEEECCS--SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred             ccCCCEEEeeCCC--cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence            5566666666666  543222 455666667777777776543   1   112456667777777776652 122    1


Q ss_pred             ccCCCCCCEEeccCCc--cCChhhhcCC---CCCCEEeeeccCCCCcc
Q 048165           74 LANLTNLQVLDLSGNQ--NLTTLGLANL---PNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        74 ~~~~~~L~~l~l~~~~--~~~~~~~~~~---~~L~~l~l~~n~~~~~~  116 (124)
                      +..+++|++|++++|.  ...|..+..+   ++|++|++++|.++.++
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence            3455677777777776  2213344444   57777777777777655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.46  E-value=4.9e-13  Score=92.17  Aligned_cols=108  Identities=20%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             CCcCcEEeccccccccCCcccccccccc-------cCccEEeccCCCCcch-hhhc--cCCCCCEEEccCccccccchhc
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANL-------TNLKKLDLDGCGITTI-QGLA--KLKNLEALDLSSNYYLHGSLEG   73 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~-------~~l~~L~l~~~~l~~~-~~~~--~~~~L~~l~l~~~~~~~~~~~~   73 (124)
                      +++|+.|++++|.  +. .++...+...       ++|+.|++++|.++.. ..+.  .+++|+.|++++|.+.+ .|..
T Consensus       456 l~~L~~L~Ls~N~--l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~  531 (636)
T 4eco_A          456 GSPLSSINLMGNM--LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ  531 (636)
T ss_dssp             TCCCSEEECCSSC--CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             CCCCCEEECCCCC--CC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence            4555566666655  44 3342222222       2566666666666653 2343  56666666666666664 5555


Q ss_pred             ccCCCCCCEEeccC------Cc---cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           74 LANLTNLQVLDLSG------NQ---NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        74 ~~~~~~L~~l~l~~------~~---~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +..+++|+.|++++      |.   .+ +..+..+++|+.|++++|.+..+|
T Consensus       532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~ip  582 (636)
T 4eco_A          532 PLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGSNDIRKVN  582 (636)
T ss_dssp             GGGCSSCCEEECCSCBCTTCCBCCCCC-CTTGGGCSSCCEEECCSSCCCBCC
T ss_pred             hhcCCCCCEEECCCCcccccCcccccC-hHHHhcCCCCCEEECCCCcCCccC
Confidence            66666666666633      22   22 445566666666666666665554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=2.4e-13  Score=96.41  Aligned_cols=108  Identities=20%  Similarity=0.216  Sum_probs=85.6

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccc--h-hhhcc-------CCCCCEEEccCccccccch
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITT--I-QGLAK-------LKNLEALDLSSNYYLHGSL   71 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~--~-~~~~~-------~~~L~~l~l~~~~~~~~~~   71 (124)
                      ++++|+.|++++|.  +.+.+| ..+..+++|+.|++++|+ +++  . ..+..       +++|+.|++++|.+. ..|
T Consensus       489 ~L~~L~~L~Ls~N~--l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip  564 (876)
T 4ecn_A          489 NLKDLTDVELYNCP--NMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP  564 (876)
T ss_dssp             GCTTCCEEEEESCT--TCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred             cCCCCCEEECcCCC--CCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence            78899999999998  776777 678899999999999997 775  2 23443       448999999999888 667


Q ss_pred             h--cccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           72 E--GLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        72 ~--~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      .  .++.+++|+.|++++|.  .+ + .+..+++|+.|++++|.+..++
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~l~~l-p-~~~~L~~L~~L~Ls~N~l~~lp  611 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNKVRHL-E-AFGTNVKLTDLKLDYNQIEEIP  611 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCCBC-C-CCCTTSEESEEECCSSCCSCCC
T ss_pred             ChhhhhcCCCCCEEECCCCCcccc-h-hhcCCCcceEEECcCCccccch
Confidence            7  78888888888888887  34 3 6677778888888888777665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.43  E-value=2.4e-12  Score=85.76  Aligned_cols=85  Identities=26%  Similarity=0.271  Sum_probs=40.8

Q ss_pred             cccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEee
Q 048165           28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDL  107 (124)
Q Consensus        28 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l  107 (124)
                      +..+++|++|++++|.++..+ +..+++|+++++++|.+.+.   .++.+++|+.+++++|..+....+..+++|+.|++
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  177 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC  177 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred             cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence            344455555555555544432 44455555555555555432   13444455555555553111113444555566666


Q ss_pred             eccCCCCcc
Q 048165          108 RDCGITTIQ  116 (124)
Q Consensus       108 ~~n~~~~~~  116 (124)
                      ++|.++.++
T Consensus       178 s~n~l~~l~  186 (457)
T 3bz5_A          178 SFNKITELD  186 (457)
T ss_dssp             CSSCCCCCC
T ss_pred             CCCccceec
Confidence            655555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.42  E-value=1.4e-12  Score=83.42  Aligned_cols=105  Identities=24%  Similarity=0.229  Sum_probs=85.1

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      ++|++|++++|.  +.+..+ ..+..+++|+.|++++|.++..  ..+..+++|+.+++++|.+. ..|..+..+++|+.
T Consensus       193 ~~L~~L~l~~n~--i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~  268 (332)
T 2ft3_A          193 ETLNELHLDHNK--IQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV  268 (332)
T ss_dssp             SSCSCCBCCSSC--CCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred             CCCCEEECCCCc--CCccCH-HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence            578999999998  764433 6788899999999999999884  36888999999999999998 66777889999999


Q ss_pred             EeccCCc--cCChhhhcC------CCCCCEEeeeccCCC
Q 048165           83 LDLSGNQ--NLTTLGLAN------LPNLKTLDLRDCGIT  113 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~------~~~L~~l~l~~n~~~  113 (124)
                      +++++|.  .+....+..      ...++.+++++|++.
T Consensus       269 L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             EECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            9999997  443333332      356889999999887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.40  E-value=2.2e-13  Score=87.05  Aligned_cols=60  Identities=30%  Similarity=0.496  Sum_probs=23.7

Q ss_pred             ccccCccEEeccCC-CCcc--h-hhhccCCCCCEEEccCc-ccccc-chhcccCCC-CCCEEeccCC
Q 048165           29 ANLTNLKKLDLDGC-GITT--I-QGLAKLKNLEALDLSSN-YYLHG-SLEGLANLT-NLQVLDLSGN   88 (124)
Q Consensus        29 ~~~~~l~~L~l~~~-~l~~--~-~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~   88 (124)
                      ..+++|+.|++++| .++.  . ..+..+++|++|++++| .+.+. .+..+..++ +|++|++++|
T Consensus       139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            33444444444444 3332  1 12333444444444444 33321 122233344 4444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.39  E-value=1.7e-12  Score=86.43  Aligned_cols=103  Identities=30%  Similarity=0.318  Sum_probs=71.4

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      .+++|++|++++|.  +.+ ++  .+..+++|+.|++++|.++..+ +..+++|+++++++|.+.+. +  ++.+++|++
T Consensus        40 ~l~~L~~L~Ls~n~--l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           40 QLATLTSLDCHNSS--ITD-MT--GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HHTTCCEEECCSSC--CCC-CT--TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             HcCCCCEEEccCCC--ccc-Ch--hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            35678888888887  653 34  4667788888888888777754 66777788888888877743 2  667777777


Q ss_pred             EeccCCccCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           83 LDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        83 l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      |++++|... ...+..+++|+.|++++|.++.+
T Consensus       111 L~L~~N~l~-~l~~~~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A          111 LNCDTNKLT-KLDVSQNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             EECCSSCCS-CCCCTTCTTCCEEECTTSCCSCC
T ss_pred             EECCCCcCC-eecCCCCCcCCEEECCCCcccee
Confidence            777777611 11256677777777777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.36  E-value=2.1e-12  Score=90.30  Aligned_cols=95  Identities=28%  Similarity=0.242  Sum_probs=80.3

Q ss_pred             cccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCC
Q 048165           26 LGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNL  102 (124)
Q Consensus        26 ~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L  102 (124)
                      ..+..++.|+.|++++|.+..+ ..+..+++|++|++++|.+. ..|..++.+++|+.|++++|.  .+ |..+..+++|
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L  295 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQL  295 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTC
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCC
Confidence            5677889999999999999885 56778999999999999999 778889999999999999998  56 7788999999


Q ss_pred             CEEeeeccCCCCccc-ccccc
Q 048165          103 KTLDLRDCGITTIQG-IQQFT  122 (124)
Q Consensus       103 ~~l~l~~n~~~~~~~-~~~l~  122 (124)
                      +.|++++|.+..+|. +..+.
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~  316 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLC  316 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCT
T ss_pred             CEEECCCCCCCccChhhhcCC
Confidence            999999999998874 44443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=6.2e-12  Score=73.79  Aligned_cols=82  Identities=27%  Similarity=0.222  Sum_probs=70.9

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      ++++.|++++|.  +.+..+ ..+..+++|+.|++++|+++..+  .+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        33 ~~L~~L~Ls~N~--l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQ--ITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCC--ccccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence            678999999999  774434 67889999999999999999953  3678999999999999999665556889999999


Q ss_pred             EeccCCc
Q 048165           83 LDLSGNQ   89 (124)
Q Consensus        83 l~l~~~~   89 (124)
                      +++++|.
T Consensus       110 L~L~~N~  116 (174)
T 2r9u_A          110 IYLYNNP  116 (174)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            9999997

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=7.8e-12  Score=73.09  Aligned_cols=83  Identities=29%  Similarity=0.246  Sum_probs=71.6

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .++++.|++++|.  +.+..+ ..+..+++|+.|++++|+++..+  .+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        29 ~~~l~~L~L~~N~--i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           29 PTTTQVLYLYDNQ--ITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             CTTCSEEECCSSC--CCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEcCCCc--CCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence            3678999999999  774434 67889999999999999999953  467899999999999999976666788999999


Q ss_pred             EEeccCCc
Q 048165           82 VLDLSGNQ   89 (124)
Q Consensus        82 ~l~l~~~~   89 (124)
                      ++++++|.
T Consensus       106 ~L~L~~N~  113 (170)
T 3g39_A          106 HIWLLNNP  113 (170)
T ss_dssp             EEECCSSC
T ss_pred             EEEeCCCC
Confidence            99999996

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=1.4e-12  Score=83.37  Aligned_cols=106  Identities=26%  Similarity=0.263  Sum_probs=44.8

Q ss_pred             CCCcCcEEeccccccccCCc-ccccccccccCccEEeccCC-CCcc---hhhhccCC-CCCEEEccCcc--cc-ccchhc
Q 048165            3 NLRYLQVLDLSANYNITSGS-LTRLGLANLTNLKKLDLDGC-GITT---IQGLAKLK-NLEALDLSSNY--YL-HGSLEG   73 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~-~~~~~~~~~~~l~~L~l~~~-~l~~---~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~   73 (124)
                      .+++|++|++++|.. +.+. ++ ..+..+++|+.|++++| .++.   ...+..++ +|++|++++|.  ++ ...+..
T Consensus       140 ~~~~L~~L~L~~~~~-l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~  217 (336)
T 2ast_B          140 KNSNLVRLNLSGCSG-FSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL  217 (336)
T ss_dssp             TCTTCSEEECTTCBS-CCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred             cCCCCCEEECCCCCC-CCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence            355556666655521 2211 22 23344555555555555 4443   12334444 55555555542  22 122233


Q ss_pred             ccCCCCCCEEeccCCccC---ChhhhcCCCCCCEEeeecc
Q 048165           74 LANLTNLQVLDLSGNQNL---TTLGLANLPNLKTLDLRDC  110 (124)
Q Consensus        74 ~~~~~~L~~l~l~~~~~~---~~~~~~~~~~L~~l~l~~n  110 (124)
                      +..+++|++|++++|..+   .+..+..+++|+.|++++|
T Consensus       218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            334444444444444311   1223334444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=8.4e-15  Score=87.59  Aligned_cols=106  Identities=31%  Similarity=0.294  Sum_probs=79.8

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchh-hhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQ-GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .+++|++|++++|.  +.+ ++  .+..+++|+.|++++|.++..+ .+..+++|+++++++|.+.+ .| .+..+++|+
T Consensus        46 ~l~~L~~L~ls~n~--l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~  118 (198)
T 1ds9_A           46 TLKACKHLALSTNN--IEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             HTTTCSEEECSEEE--ESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred             cCCCCCEEECCCCC--Ccc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence            46788888888887  663 45  5677888888888888888753 44556788888998888874 33 566778889


Q ss_pred             EEeccCCc--cCCh-hhhcCCCCCCEEeeeccCCCCc
Q 048165           82 VLDLSGNQ--NLTT-LGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        82 ~l~l~~~~--~~~~-~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      ++++++|.  .+.. ..+..+++|+.+++++|++.+.
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            99998886  2211 3577888999999999888665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=1.4e-14  Score=86.55  Aligned_cols=82  Identities=29%  Similarity=0.323  Sum_probs=45.1

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccch-hcccCCCCCCE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSL-EGLANLTNLQV   82 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~   82 (124)
                      +++|+.|++++|.  +. .++ ..+..+++|+.|++++|.++.++.+..+++|+.+++++|.+.+..+ ..+..+++|++
T Consensus        69 l~~L~~L~l~~n~--l~-~l~-~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T 1ds9_A           69 MENLRILSLGRNL--IK-KIE-NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             HTTCCEEEEEEEE--EC-SCS-SHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             CCCCCEEECCCCC--cc-ccc-chhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence            4556666666665  44 334 3334455666666666666655555555666666666666553221 34555566666


Q ss_pred             EeccCCc
Q 048165           83 LDLSGNQ   89 (124)
Q Consensus        83 l~l~~~~   89 (124)
                      +++++|.
T Consensus       145 L~l~~N~  151 (198)
T 1ds9_A          145 LLLAGNP  151 (198)
T ss_dssp             EEECSCH
T ss_pred             EEecCCc
Confidence            6666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.24  E-value=1.2e-10  Score=77.51  Aligned_cols=55  Identities=27%  Similarity=0.320  Sum_probs=25.7

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCcccc
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYL   67 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~   67 (124)
                      +|++|++++|.  +.+ ++  .+..+++|++|++++|.++..+..  .++|+++++++|.+.
T Consensus       132 ~L~~L~L~~n~--l~~-lp--~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~  186 (454)
T 1jl5_A          132 LLEYLGVSNNQ--LEK-LP--ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLE  186 (454)
T ss_dssp             TCCEEECCSSC--CSS-CC--CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS
T ss_pred             CCCEEECcCCC--CCC-Cc--ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCC
Confidence            45555555555  442 33  245555555555555555442211  124444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.23  E-value=6.5e-12  Score=81.79  Aligned_cols=17  Identities=29%  Similarity=0.391  Sum_probs=7.8

Q ss_pred             ccccCccEEeccCCCCc
Q 048165           29 ANLTNLKKLDLDGCGIT   45 (124)
Q Consensus        29 ~~~~~l~~L~l~~~~l~   45 (124)
                      ..+++|+.|++++|.++
T Consensus       119 ~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          119 SKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             HHCTTCCEEECCSSCCH
T ss_pred             HhCCCCCEEECcCCCCC
Confidence            34444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.22  E-value=7.5e-12  Score=80.98  Aligned_cols=14  Identities=29%  Similarity=0.501  Sum_probs=5.9

Q ss_pred             cCccEEeccCCCCc
Q 048165           32 TNLKKLDLDGCGIT   45 (124)
Q Consensus        32 ~~l~~L~l~~~~l~   45 (124)
                      ++|++|++++|.++
T Consensus        80 ~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           80 ANVTSLNLSGNFLS   93 (362)
T ss_dssp             TTCCEEECCSSCGG
T ss_pred             CCccEEECcCCcCC
Confidence            34444444444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.21  E-value=2.1e-11  Score=79.38  Aligned_cols=60  Identities=27%  Similarity=0.333  Sum_probs=27.6

Q ss_pred             cccCccEEeccCCCCcc------hh-hhccCCCCCEEEccCcccc----ccchhcccCCCCCCEEeccCCc
Q 048165           30 NLTNLKKLDLDGCGITT------IQ-GLAKLKNLEALDLSSNYYL----HGSLEGLANLTNLQVLDLSGNQ   89 (124)
Q Consensus        30 ~~~~l~~L~l~~~~l~~------~~-~~~~~~~L~~l~l~~~~~~----~~~~~~~~~~~~L~~l~l~~~~   89 (124)
                      .+++|+.|++++|.++.      .+ .+..+++|+.|++++|.+.    ...|..+..+++|++|++++|.
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            44455555555555442      12 3344455555555555443    2233344444455555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=1.5e-10  Score=79.08  Aligned_cols=33  Identities=27%  Similarity=0.321  Sum_probs=14.9

Q ss_pred             CccEEeccCCCCcchhhhccCCCCCEEEccCcccc
Q 048165           33 NLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYL   67 (124)
Q Consensus        33 ~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~   67 (124)
                      +|+.|++++|.++..+.  .+++|+.|++++|.+.
T Consensus       121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLT  153 (571)
T ss_dssp             TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCCCCCC--cCccccEEeCCCCccC
Confidence            44444444444444322  3344444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=6.9e-11  Score=80.70  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=39.6

Q ss_pred             ccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCC-------CEEeccCCc--cCChhhhcCCCC
Q 048165           31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL-------QVLDLSGNQ--NLTTLGLANLPN  101 (124)
Q Consensus        31 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L-------~~l~l~~~~--~~~~~~~~~~~~  101 (124)
                      +++|+.|++++|.++..+.+.  ++|+.|++++|.+. ..|. +..  +|       +.|++++|.  .+ |..+..+++
T Consensus       159 l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~  231 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDP  231 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCC-CGGGGGSCT
T ss_pred             CCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceec-CHHHhcCCC
Confidence            445555555555555533322  45566666665555 3333 322  44       666666665  44 444455666


Q ss_pred             CCEEeeeccCCCC
Q 048165          102 LKTLDLRDCGITT  114 (124)
Q Consensus       102 L~~l~l~~n~~~~  114 (124)
                      |+.|++++|++++
T Consensus       232 L~~L~L~~N~l~~  244 (571)
T 3cvr_A          232 TCTIILEDNPLSS  244 (571)
T ss_dssp             TEEEECCSSSCCH
T ss_pred             CCEEEeeCCcCCC
Confidence            6666666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=1.1e-10  Score=75.04  Aligned_cols=84  Identities=26%  Similarity=0.263  Sum_probs=69.0

Q ss_pred             CCCCcCcEEeccc-cccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            2 ANLRYLQVLDLSA-NYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         2 ~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      ..+++|+.|++++ |.  +. .++...+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+..+..+.
T Consensus        28 ~~~~~L~~L~l~~~n~--l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~  104 (347)
T 2ifg_A           28 PGAENLTELYIENQQH--LQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS  104 (347)
T ss_dssp             CSCSCCSEEECCSCSS--CC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred             CCCCCeeEEEccCCCC--CC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence            4567899999996 88  76 44546789999999999999999994  3678999999999999999955444454444


Q ss_pred             CCCEEeccCCc
Q 048165           79 NLQVLDLSGNQ   89 (124)
Q Consensus        79 ~L~~l~l~~~~   89 (124)
                       |+.|++.+|.
T Consensus       105 -L~~l~l~~N~  114 (347)
T 2ifg_A          105 -LQELVLSGNP  114 (347)
T ss_dssp             -CCEEECCSSC
T ss_pred             -ceEEEeeCCC
Confidence             9999999886

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.21  E-value=1.7e-11  Score=79.34  Aligned_cols=108  Identities=25%  Similarity=0.360  Sum_probs=76.7

Q ss_pred             CCcCcEEeccccccccCCcccc----ccccccc-CccEEeccCCCCcc--hhhhccC-----CCCCEEEccCccccccch
Q 048165            4 LRYLQVLDLSANYNITSGSLTR----LGLANLT-NLKKLDLDGCGITT--IQGLAKL-----KNLEALDLSSNYYLHGSL   71 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~----~~~~~~~-~l~~L~l~~~~l~~--~~~~~~~-----~~L~~l~l~~~~~~~~~~   71 (124)
                      ..+|++|++++|.  +.+ .+.    ..+..++ +|+.|++++|.++.  +..+..+     ++|++|++++|.+.+..+
T Consensus        21 ~~~L~~L~Ls~n~--l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           21 PHGVTSLDLSLNN--LYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             CTTCCEEECTTSC--GGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CCCceEEEccCCC--CCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            4459999999998  653 332    3456777 89999999999987  3344443     889999999999886666


Q ss_pred             hccc----CC-CCCCEEeccCCc--cCChhh----hcC-CCCCCEEeeeccCCCC
Q 048165           72 EGLA----NL-TNLQVLDLSGNQ--NLTTLG----LAN-LPNLKTLDLRDCGITT  114 (124)
Q Consensus        72 ~~~~----~~-~~L~~l~l~~~~--~~~~~~----~~~-~~~L~~l~l~~n~~~~  114 (124)
                      ..+.    .+ ++|++|++++|.  ......    +.. +.+|++|++++|.+.+
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            5433    44 788999998887  222222    333 3578888888887763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.18  E-value=6.9e-11  Score=76.20  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc-h--hhhccCCCCCE-EEccCccccccchhcccCCCCC
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-I--QGLAKLKNLEA-LDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~--~~~~~~~~L~~-l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      +++++|++++|.  +. .+++..|.++++|++|++++|.+.. +  ..+..++++++ +.+..|.+....+..+..+++|
T Consensus        30 ~~l~~L~Ls~N~--i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTK--LR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCC--CS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CCCCEEEccCCc--CC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            457778888887  65 5564567778888888888887644 2  24556666554 3445566665555666677777


Q ss_pred             CEEeccCCc
Q 048165           81 QVLDLSGNQ   89 (124)
Q Consensus        81 ~~l~l~~~~   89 (124)
                      +++++++|.
T Consensus       107 ~~L~l~~n~  115 (350)
T 4ay9_X          107 QYLLISNTG  115 (350)
T ss_dssp             CEEEEEEEC
T ss_pred             ccccccccc
Confidence            777766654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.18  E-value=3.2e-10  Score=78.18  Aligned_cols=76  Identities=24%  Similarity=0.250  Sum_probs=46.2

Q ss_pred             cCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCEEeeec
Q 048165           32 TNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRD  109 (124)
Q Consensus        32 ~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~  109 (124)
                      ++|+.|++++|.++..+  ..+++|+.|++++|.+. ..|.   .+++|+.|++++|.  .+ |..+..+++|+.|++++
T Consensus       221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEG  293 (622)
T ss_dssp             TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCS
T ss_pred             CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecC
Confidence            44555555555555533  33456666666666665 3333   44567777777776  44 55667777777777777


Q ss_pred             cCCCC
Q 048165          110 CGITT  114 (124)
Q Consensus       110 n~~~~  114 (124)
                      |++++
T Consensus       294 N~l~~  298 (622)
T 3g06_A          294 NPLSE  298 (622)
T ss_dssp             CCCCH
T ss_pred             CCCCC
Confidence            77764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.17  E-value=3.8e-10  Score=75.15  Aligned_cols=101  Identities=21%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      ++++|++|++++|.  +. .++ ..   ..+|++|++++|.++..+.+..+++|+++++++|.+.+ .|..   ..+|++
T Consensus       151 ~l~~L~~L~l~~N~--l~-~lp-~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~  219 (454)
T 1jl5_A          151 NSSFLKIIDVDNNS--LK-KLP-DL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDL---PLSLES  219 (454)
T ss_dssp             TCTTCCEEECCSSC--CS-CCC-CC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred             CCCCCCEEECCCCc--Cc-ccC-CC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence            44455555555554  33 122 11   23455555555555544444455555555555554442 1211   134555


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +++++|.  .+ + .+..+++|+.+++++|.++.++
T Consensus       220 L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          220 IVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             EECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC
T ss_pred             EECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCccc
Confidence            5555554  22 2 2445555555555555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.13  E-value=1.5e-11  Score=81.45  Aligned_cols=13  Identities=46%  Similarity=0.629  Sum_probs=5.0

Q ss_pred             CCCCCEEEccCcc
Q 048165           53 LKNLEALDLSSNY   65 (124)
Q Consensus        53 ~~~L~~l~l~~~~   65 (124)
                      +++|++|++++|.
T Consensus       112 ~~~L~~L~Ls~n~  124 (461)
T 1z7x_W          112 LPTLQELHLSDNL  124 (461)
T ss_dssp             CTTCCEEECCSSB
T ss_pred             CCceeEEECCCCc
Confidence            3333333333333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.12  E-value=1e-11  Score=82.27  Aligned_cols=63  Identities=22%  Similarity=0.189  Sum_probs=35.0

Q ss_pred             cCCCCCEEEccCccccccchhcccC-----CCCCCEEeccCCccC------ChhhhcCCCCCCEEeeeccCCCC
Q 048165           52 KLKNLEALDLSSNYYLHGSLEGLAN-----LTNLQVLDLSGNQNL------TTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        52 ~~~~L~~l~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~~~~~------~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      .+++|+++++++|.+.+..+..+..     .++|+++++++|...      -+..+..+++|+.+++++|.+.+
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            4456666666666655443333321     456666666666411      03344556677777777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.10  E-value=4.2e-10  Score=72.53  Aligned_cols=86  Identities=24%  Similarity=0.331  Sum_probs=43.2

Q ss_pred             cCccEEeccCCCCcchh--hhccCCCCCEEEccCccccccch-hcccCCCCCCEE-eccCCc--cCChhhhcCCCCCCEE
Q 048165           32 TNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSL-EGLANLTNLQVL-DLSGNQ--NLTTLGLANLPNLKTL  105 (124)
Q Consensus        32 ~~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l-~l~~~~--~~~~~~~~~~~~L~~l  105 (124)
                      ++++.|++++|+++.++  .+..+++|++|++++|.+.+..+ ..+..++++..+ .+..|.  .+.+..+..+++|+.+
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            34555666666655532  34555566666666665543322 334455554432 233333  3334445555566666


Q ss_pred             eeeccCCCCccc
Q 048165          106 DLRDCGITTIQG  117 (124)
Q Consensus       106 ~l~~n~~~~~~~  117 (124)
                      ++++|.+..++.
T Consensus       110 ~l~~n~l~~~~~  121 (350)
T 4ay9_X          110 LISNTGIKHLPD  121 (350)
T ss_dssp             EEEEECCSSCCC
T ss_pred             cccccccccCCc
Confidence            666665555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.08  E-value=5.7e-11  Score=77.32  Aligned_cols=40  Identities=18%  Similarity=0.110  Sum_probs=18.2

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT   46 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~   46 (124)
                      ++|++|++++|.  +...-.......+++++.|++++|.++.
T Consensus       101 ~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~n~l~~  140 (372)
T 3un9_A          101 HALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQLNSLGP  140 (372)
T ss_dssp             SCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred             CCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence            456666666665  4321111112234445555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=76.07  Aligned_cols=109  Identities=19%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             CCcCcEEeccccccccCCccccccc-----ccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccc--
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGL-----ANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGS--   70 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~-----~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~--   70 (124)
                      +++++.|++++|.  +...-. ..+     ...++|+.|++++|.++..      ..+...++|++|++++|.+.+..  
T Consensus       125 L~~L~~L~Ls~n~--l~~~~~-~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~  201 (372)
T 3un9_A          125 FLRARKLGLQLNS--LGPEAC-KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE  201 (372)
T ss_dssp             HHTEEEEECCSSC--CCHHHH-HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred             HHhccHhhcCCCC--CCHHHH-HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH
Confidence            3467888888887  542211 222     2457788888888888661      23456778888888888877543  


Q ss_pred             --hhcccCCCCCCEEeccCCccC--C----hhhhcCCCCCCEEeeeccCCCCc
Q 048165           71 --LEGLANLTNLQVLDLSGNQNL--T----TLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        71 --~~~~~~~~~L~~l~l~~~~~~--~----~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                        ...+...++|+.|++++|...  .    ...+...++|+.|++++|.+.+.
T Consensus       202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence              344556678888888888611  0    22344567888888888887643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=1.8e-09  Score=68.99  Aligned_cols=85  Identities=25%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             ccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC-EEeccCCc-cCChhhhcCCCCCCEEe
Q 048165           31 LTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ-VLDLSGNQ-NLTTLGLANLPNLKTLD  106 (124)
Q Consensus        31 ~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~-~~~~~~~~~~~~L~~l~  106 (124)
                      +++|+.+++++|.++..  ..+..+.+|+.+++.+| +......+|..|.+|+ .+.+..+- .+....+..|++|+.++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEE
Confidence            55666677776666663  25666777777777766 5545556677777777 77776633 55566777778888888


Q ss_pred             eeccCCCCcc
Q 048165          107 LRDCGITTIQ  116 (124)
Q Consensus       107 l~~n~~~~~~  116 (124)
                      +.+|.+..++
T Consensus       304 l~~n~i~~I~  313 (329)
T 3sb4_A          304 ATGDKITTLG  313 (329)
T ss_dssp             ECSSCCCEEC
T ss_pred             eCCCccCccc
Confidence            7777776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.05  E-value=1.7e-09  Score=74.62  Aligned_cols=53  Identities=23%  Similarity=0.234  Sum_probs=26.2

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCcccc
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYL   67 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~   67 (124)
                      +|+.|++++|.  +. .++.    .+++|++|++++|.++..+.  .+++|++|++++|.+.
T Consensus        62 ~L~~L~L~~N~--l~-~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           62 HITTLVIPDNN--LT-SLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             TCSEEEECSCC--CS-CCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCC
T ss_pred             CCcEEEecCCC--CC-CCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC
Confidence            45555555554  43 3331    34555555555555554332  3445555555555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.03  E-value=3.1e-10  Score=67.14  Aligned_cols=110  Identities=18%  Similarity=0.138  Sum_probs=81.4

Q ss_pred             CCCCcCcEEecccc-ccccCCc----ccccccccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccc
Q 048165            2 ANLRYLQVLDLSAN-YNITSGS----LTRLGLANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGS   70 (124)
Q Consensus         2 ~~~~~l~~l~l~~~-~~~~~~~----~~~~~~~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~   70 (124)
                      ...+.|++|++++| .  +...    +. ..+...+++++|++++|.+...      ..+...+.|++|++++|.+.+..
T Consensus        33 ~~~~~L~~L~L~~n~~--i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMN--IPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             TTCTTCCEEECTTCTT--CCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             hcCCCCCEEEecCCCC--CCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            45788999999999 6  5421    12 3455678899999999999872      24556788999999999998543


Q ss_pred             ----hhcccCCCCCCEEec--cCCc-------cCChhhhcCCCCCCEEeeeccCCCCc
Q 048165           71 ----LEGLANLTNLQVLDL--SGNQ-------NLTTLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        71 ----~~~~~~~~~L~~l~l--~~~~-------~~~~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                          ...+...+.|++|++  ++|.       .+ ...+...+.|+.|++++|.+...
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l-~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI-ANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH-HHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH-HHHHHhCCCcCEEeccCCCCChH
Confidence                345567789999999  7775       12 23455678999999999987543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=1.7e-09  Score=69.17  Aligned_cols=99  Identities=19%  Similarity=0.204  Sum_probs=84.2

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCC-EEEccCccccccchhcccCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLE-ALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      |++|+.++++.|.  +. .+++..|.+|.+|+.+++..+ ++..  ..+..+.+|+ .+++.+ .+....+.+|..|.+|
T Consensus       225 ~~~L~~l~L~~n~--i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTN--AT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBC--CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             cCCCeEEECCCCC--cc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence            7899999999987  66 677788999999999999998 6664  4788999999 999988 6665667889999999


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEee
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDL  107 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l  107 (124)
                      +.+++..+.  .+....+..|++|+.+..
T Consensus       300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          300 RYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999997776  676778899999998763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.91  E-value=1.6e-09  Score=63.53  Aligned_cols=79  Identities=24%  Similarity=0.333  Sum_probs=51.3

Q ss_pred             CccEEeccCCCCcc--hhhhccCCCCCEEEccCcc-ccccchhcccCC----CCCCEEeccCCccCChh---hhcCCCCC
Q 048165           33 NLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNY-YLHGSLEGLANL----TNLQVLDLSGNQNLTTL---GLANLPNL  102 (124)
Q Consensus        33 ~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~~~~~~---~~~~~~~L  102 (124)
                      .|+.||+++|.++.  ...+..+++|+.|++++|. +++.....+...    ++|++|++++|..++..   .+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            47777777777666  3456677777777777774 665555555543    36777777777644333   34466777


Q ss_pred             CEEeeeccC
Q 048165          103 KTLDLRDCG  111 (124)
Q Consensus       103 ~~l~l~~n~  111 (124)
                      ++|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777777765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.85  E-value=3.4e-09  Score=72.23  Aligned_cols=87  Identities=17%  Similarity=0.168  Sum_probs=61.2

Q ss_pred             cccccCccEEeccCCC--Ccc--hhhhc-cCCCCCEEEccCccccccc-hhcccCCCCCCEEeccCCccCC----hhhhc
Q 048165           28 LANLTNLKKLDLDGCG--ITT--IQGLA-KLKNLEALDLSSNYYLHGS-LEGLANLTNLQVLDLSGNQNLT----TLGLA   97 (124)
Q Consensus        28 ~~~~~~l~~L~l~~~~--l~~--~~~~~-~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~----~~~~~   97 (124)
                      +..+++|+.|+++.|.  ++.  +..+. .+++|++|++++|.+++.. +..+..+++|+.|++++|. ++    +....
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~  510 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVT  510 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHH
Confidence            4557788888886543  444  22333 4788999999998887533 3445678899999999996 22    23345


Q ss_pred             CCCCCCEEeeeccCCCCc
Q 048165           98 NLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        98 ~~~~L~~l~l~~n~~~~~  115 (124)
                      .+++|+.|++++|.++..
T Consensus       511 ~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HCSSCCEEEEESCBCCTT
T ss_pred             hcCccCeeECcCCcCCHH
Confidence            788999999999997654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.81  E-value=5.8e-09  Score=61.12  Aligned_cols=84  Identities=20%  Similarity=0.259  Sum_probs=66.7

Q ss_pred             cCcEEeccccccccCCcccccccccccCccEEeccCCC-Ccc--hhhhccC----CCCCEEEccCcc-ccccchhcccCC
Q 048165            6 YLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCG-ITT--IQGLAKL----KNLEALDLSSNY-YLHGSLEGLANL   77 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~--~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~   77 (124)
                      +|++|++++|.  ++.. .-..+.+|++|+.|++++|. +++  ...+..+    ++|++|++++|. +++.....+..+
T Consensus        62 ~L~~LDLs~~~--Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSC--IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CEEEEEEESCC--CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             eEeEEeCcCCC--ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            58999999998  6533 22456789999999999995 777  3455553    479999999985 887777778899


Q ss_pred             CCCCEEeccCCccCC
Q 048165           78 TNLQVLDLSGNQNLT   92 (124)
Q Consensus        78 ~~L~~l~l~~~~~~~   92 (124)
                      ++|++|++++|..++
T Consensus       139 ~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVK  153 (176)
T ss_dssp             TTCCEEEEESCTTCC
T ss_pred             CCCCEEECCCCCCCC
Confidence            999999999998443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.77  E-value=1.3e-08  Score=63.38  Aligned_cols=77  Identities=29%  Similarity=0.382  Sum_probs=55.8

Q ss_pred             ccccCccEEeccCCCCcchh----hhccCCCCCEEEccCcccccc-chhcccCCCCCCEEeccCCc---cCC------hh
Q 048165           29 ANLTNLKKLDLDGCGITTIQ----GLAKLKNLEALDLSSNYYLHG-SLEGLANLTNLQVLDLSGNQ---NLT------TL   94 (124)
Q Consensus        29 ~~~~~l~~L~l~~~~l~~~~----~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~---~~~------~~   94 (124)
                      ..+++|+.|++++|.++.+.    .+..+++|+.|++++|.+.+. ....+..+ +|+.|++.+|.   .+.      ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            45788999999999998843    344789999999999998854 12333344 89999999886   121      12


Q ss_pred             hhcCCCCCCEEe
Q 048165           95 GLANLPNLKTLD  106 (124)
Q Consensus        95 ~~~~~~~L~~l~  106 (124)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            466788898887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.75  E-value=9.8e-09  Score=69.97  Aligned_cols=104  Identities=27%  Similarity=0.341  Sum_probs=59.7

Q ss_pred             CCcCcEEeccccccccCCcccccccc-cccCccEEeccCC-CCcc--hhh-hccCCCCCEEEccCccccccchhccc---
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLA-NLTNLKKLDLDGC-GITT--IQG-LAKLKNLEALDLSSNYYLHGSLEGLA---   75 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~-~l~~--~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~---   75 (124)
                      +++|++|++++|.  +.+... ..+. .+++|+.|++++| .++.  .+. ...+++|++|++++|.+.+..+..+.   
T Consensus       104 ~~~L~~L~L~~~~--~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          104 YTWLEEIRLKRMV--VTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             CTTCCEEEEESCB--CCHHHH-HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCCCeEEeeCcE--EcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            4566666666665  443322 2222 4667777777776 4443  222 33577777777777776644433332   


Q ss_pred             -CCCCCCEEeccCCc-cCChhh----hcCCCCCCEEeeecc
Q 048165           76 -NLTNLQVLDLSGNQ-NLTTLG----LANLPNLKTLDLRDC  110 (124)
Q Consensus        76 -~~~~L~~l~l~~~~-~~~~~~----~~~~~~L~~l~l~~n  110 (124)
                       .+++|+.|++.+|. .++...    ...+++|+.|++++|
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence             55677777777764 232222    234577777777766

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.69  E-value=4.9e-08  Score=66.58  Aligned_cols=79  Identities=14%  Similarity=0.054  Sum_probs=48.9

Q ss_pred             CCCcCcEEeccccccccCCc----ccccccccccCccEEeccCCCCcc-----h-hhhccCCCCCEEEccCccccccchh
Q 048165            3 NLRYLQVLDLSANYNITSGS----LTRLGLANLTNLKKLDLDGCGITT-----I-QGLAKLKNLEALDLSSNYYLHGSLE   72 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~----~~~~~~~~~~~l~~L~l~~~~l~~-----~-~~~~~~~~L~~l~l~~~~~~~~~~~   72 (124)
                      +|++|++|++++|.  +.+.    ++ .....+++|+.|++++|.++.     . ..+..+++|++|++++|.+.+ .+.
T Consensus       162 ~~~~L~~L~L~~~~--~~~~~~~~l~-~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~  237 (592)
T 3ogk_B          162 HCRKIKTLLMEESS--FSEKDGKWLH-ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG  237 (592)
T ss_dssp             HCTTCSEEECTTCE--EECCCSHHHH-HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH
T ss_pred             hCCCCCEEECcccc--ccCcchhHHH-HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH
Confidence            47888999998887  5422    22 234567888888888887762     1 234567888888888876653 233


Q ss_pred             cccCCCCCCEEec
Q 048165           73 GLANLTNLQVLDL   85 (124)
Q Consensus        73 ~~~~~~~L~~l~l   85 (124)
                      .+..+++|+.+++
T Consensus       238 ~~~~~~~L~~L~l  250 (592)
T 3ogk_B          238 FFKAAANLEEFCG  250 (592)
T ss_dssp             HHHHCTTCCEEEE
T ss_pred             HHhhhhHHHhhcc
Confidence            3333344444433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.67  E-value=1.1e-08  Score=69.80  Aligned_cols=84  Identities=15%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             cccccCccEEeccCCCCcc--hhhhcc-CCCCCEEEccCccccccchhcc-cCCCCCCEEeccCCccCC---hhhhcCCC
Q 048165           28 LANLTNLKKLDLDGCGITT--IQGLAK-LKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLT---TLGLANLP  100 (124)
Q Consensus        28 ~~~~~~l~~L~l~~~~l~~--~~~~~~-~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~---~~~~~~~~  100 (124)
                      +..+++|+.|++++ .++.  +..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|....   ......++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            34566777777765 4444  233333 6778888888777765544444 457788888888776210   11234567


Q ss_pred             CCCEEeeeccCC
Q 048165          101 NLKTLDLRDCGI  112 (124)
Q Consensus       101 ~L~~l~l~~n~~  112 (124)
                      +|+.|++++|++
T Consensus       507 ~L~~L~l~~~~~  518 (594)
T 2p1m_B          507 TMRSLWMSSCSV  518 (594)
T ss_dssp             GSSEEEEESSCC
T ss_pred             CCCEEeeeCCCC
Confidence            788888888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.57  E-value=8e-08  Score=56.75  Aligned_cols=88  Identities=15%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             ccccccCccEEeccCC-CCcch------hhhccCCCCCEEEccCccccccchh----cccCCCCCCEEeccCCc------
Q 048165           27 GLANLTNLKKLDLDGC-GITTI------QGLAKLKNLEALDLSSNYYLHGSLE----GLANLTNLQVLDLSGNQ------   89 (124)
Q Consensus        27 ~~~~~~~l~~L~l~~~-~l~~~------~~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~------   89 (124)
                      .+...+.++.|++++| .+...      ..+...++|++|++++|.+.+....    .+...+.|++|++++|.      
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4567889999999999 88761      3456678999999999999854433    34456889999999996      


Q ss_pred             -cCChhhhcCCCCCCEEee--eccCCCCc
Q 048165           90 -NLTTLGLANLPNLKTLDL--RDCGITTI  115 (124)
Q Consensus        90 -~~~~~~~~~~~~L~~l~l--~~n~~~~~  115 (124)
                       .+ ...+...+.|+.|++  ++|.+.+.
T Consensus       111 ~~l-~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          111 LAL-VEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHH-HHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHH-HHHHHhCCCceEEEecCCCCCCCHH
Confidence             12 345667789999999  88988753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.54  E-value=8.4e-07  Score=58.37  Aligned_cols=91  Identities=10%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             ccccccccccCccEEeccCCCCc-----c--hhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc-cCChh
Q 048165           23 LTRLGLANLTNLKKLDLDGCGIT-----T--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ-NLTTL   94 (124)
Q Consensus        23 ~~~~~~~~~~~l~~L~l~~~~l~-----~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~   94 (124)
                      ++...|..|++|+.+.+.++.+.     .  ...+..+++|+.+++.++ +.......|..|.+|+.+.+..+- .+...
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~  340 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPANVTQINFS  340 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTTCCEECTT
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECccccEEcHH
Confidence            33355667777777777766554     1  235667777777777743 554555667777788888776553 55556


Q ss_pred             hhcCCCCCCEEeeeccCCCCc
Q 048165           95 GLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        95 ~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      .+..| +|+.+++.+|.+..+
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBC
T ss_pred             hCCCC-CCCEEEEcCCCCccc
Confidence            67777 788888877766544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.50  E-value=5.5e-07  Score=56.16  Aligned_cols=87  Identities=22%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             cccccCccE--EeccCCCCcchh-----hhccCCCCCEEEccCccccc--cchhcccCCCCCCEEeccCCccCChhhhcC
Q 048165           28 LANLTNLKK--LDLDGCGITTIQ-----GLAKLKNLEALDLSSNYYLH--GSLEGLANLTNLQVLDLSGNQNLTTLGLAN   98 (124)
Q Consensus        28 ~~~~~~l~~--L~l~~~~l~~~~-----~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~   98 (124)
                      +...+.|..  ++++.|.....+     ....+++|++|++++|.+.+  ..+..+..+++|+.|++++|..-....+..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            333444554  556666444321     12357899999999999885  233455678899999999997221233444


Q ss_pred             CC--CCCEEeeeccCCCC
Q 048165           99 LP--NLKTLDLRDCGITT  114 (124)
Q Consensus        99 ~~--~L~~l~l~~n~~~~  114 (124)
                      +.  .|+.|++++|++..
T Consensus       217 l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          217 IKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             GTTSCCSEEECTTSTTGG
T ss_pred             cccCCcceEEccCCcCcc
Confidence            44  89999999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.40  E-value=2.4e-06  Score=56.25  Aligned_cols=103  Identities=13%  Similarity=0.157  Sum_probs=59.9

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCcccc-----ccchhcc
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYL-----HGSLEGL   74 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~-----~~~~~~~   74 (124)
                      .+|++|+.+.+..+-   . .++...|.+ .+|+.+.+.. .++..  ..+..+++|+.+++.++.+.     ......|
T Consensus       223 ~~~~~L~~l~l~~~l---~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF  296 (401)
T 4fdw_A          223 LKTSQLKTIEIPENV---S-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL  296 (401)
T ss_dssp             TTCTTCCCEECCTTC---C-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred             hCCCCCCEEecCCCc---c-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence            344555555554432   1 222233333 4455555522 23332  35667778888888776543     2344567


Q ss_pred             cCCCCCCEEeccCCc-cCChhhhcCCCCCCEEeeecc
Q 048165           75 ANLTNLQVLDLSGNQ-NLTTLGLANLPNLKTLDLRDC  110 (124)
Q Consensus        75 ~~~~~L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n  110 (124)
                      ..|.+|+.+.+..+- .+....+..|.+|+.+.+..+
T Consensus       297 ~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          297 EGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             hCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc
Confidence            778888888887543 565667778888888887543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.39  E-value=1.6e-07  Score=60.97  Aligned_cols=54  Identities=26%  Similarity=0.344  Sum_probs=28.2

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhc--cCCCCCEEEcc
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLA--KLKNLEALDLS   62 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~--~~~~L~~l~l~   62 (124)
                      .+|+|++|.++++.  .. .++ . + .+++|+.|++..|.+..  ...+.  .+|+|+.|+++
T Consensus       170 ~~P~L~~L~L~g~~--~l-~l~-~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          170 AMPLLNNLKIKGTN--NL-SIG-K-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             TCTTCCEEEEECCB--TC-BCC-S-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             cCCCCcEEEEeCCC--Cc-eec-c-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            46777888777763  11 222 1 2 25566666666555544  12222  45566666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.29  E-value=1.6e-05  Score=52.04  Aligned_cols=105  Identities=13%  Similarity=0.245  Sum_probs=74.2

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.+|..|+.+.+....   . .+....+..+..|+.+.+... ++..  ..+..+.+|+.+++..+ +......+|..|.
T Consensus       261 F~~c~~L~~i~lp~~~---~-~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV---V-SIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTCSSCCEEECCTTC---C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             eeecccccEEeccccc---c-eecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            4567777777776553   1 344456777888888888643 4442  46777888999988764 4435556788888


Q ss_pred             CCCEEeccCCc-cCChhhhcCCCCCCEEeeeccC
Q 048165           79 NLQVLDLSGNQ-NLTTLGLANLPNLKTLDLRDCG  111 (124)
Q Consensus        79 ~L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n~  111 (124)
                      +|+.+.+..+- .+....+..|.+|+.+++.++.
T Consensus       335 ~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          335 QLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence            99999886553 6767788889999999887753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.17  E-value=1.5e-05  Score=51.77  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=67.3

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .++..|+.+.+..+-   . .+....+..+.+++.+.+..+ ++..  ..+..+.+|+.+.+.++.+.......|..|.+
T Consensus       237 ~~~~~L~~i~lp~~v---~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          237 YGMKALDEIAIPKNV---T-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTCSSCCEEEECTTC---C-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             cCCccceEEEcCCCc---c-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            345556666554442   2 233345566777777777544 3332  35667888888888877776555677888888


Q ss_pred             CCEEeccCCc-cCChhhhcCCCCCCEEeeec
Q 048165           80 LQVLDLSGNQ-NLTTLGLANLPNLKTLDLRD  109 (124)
Q Consensus        80 L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~  109 (124)
                      |+.+.+..+- .+....+..|.+|+.+.+..
T Consensus       312 L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          312 LSSVTLPTALKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred             CCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence            8888886553 56566777888888777643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.11  E-value=1.9e-05  Score=51.68  Aligned_cols=104  Identities=22%  Similarity=0.278  Sum_probs=72.7

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.+|..|+.+.+...   +. .++...|.+|.+|+.+.+..+ ++..  ..+..+.+|+.+.+..+ +......+|..|.
T Consensus       284 F~~c~~L~~i~l~~~---i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          284 FMNCPALQDIEFSSR---IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTCTTCCEEECCTT---CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             cccccccccccCCCc---cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            467889999988654   33 456678899999999999865 5543  47888999999999765 5546667899999


Q ss_pred             CCCEEeccCCccCChhhhcCCCCCCEEeeeccC
Q 048165           79 NLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCG  111 (124)
Q Consensus        79 ~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~  111 (124)
                      +|+.+.+.++... ...+..+..|+.+.+..+.
T Consensus       358 ~L~~i~~~~~~~~-~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          358 ALNNIEYSGSRSQ-WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TCCEEEESSCHHH-HHTCBCCCCC---------
T ss_pred             CCCEEEECCceee-hhhhhccCCCCEEEeCCCC
Confidence            9999999887522 3456677888888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.11  E-value=5.3e-06  Score=46.27  Aligned_cols=54  Identities=22%  Similarity=0.168  Sum_probs=34.0

Q ss_pred             cEEeccCCCCc--chhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc
Q 048165           35 KKLDLDGCGIT--TIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ   89 (124)
Q Consensus        35 ~~L~l~~~~l~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   89 (124)
                      ..++.+++.++  .++. .-..+++.|++++|.++...+..+..+++|+.+++.+|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            46677777776  4332 123367788888887775444555666777777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=1.4e-05  Score=51.97  Aligned_cols=107  Identities=21%  Similarity=0.207  Sum_probs=65.0

Q ss_pred             CCcCcEEeccccccc---c----CCcccccccccccCccEEeccCCC-CcchhhhccCCCCCEEEccCccccccchhccc
Q 048165            4 LRYLQVLDLSANYNI---T----SGSLTRLGLANLTNLKKLDLDGCG-ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLA   75 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~---~----~~~~~~~~~~~~~~l~~L~l~~~~-l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~   75 (124)
                      +++|+.|.+......   +    .+.+. ..+..+++|+.|+++++. +. .+.+ .+++|+.|++..+.+.......+.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHH
Confidence            578888877544200   0    01122 345678899999998873 32 2233 378999999998887654444444


Q ss_pred             --CCCCCCEEeccCCc-------cCC--hhhh--cCCCCCCEEeeeccCCC
Q 048165           76 --NLTNLQVLDLSGNQ-------NLT--TLGL--ANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        76 --~~~~L~~l~l~~~~-------~~~--~~~~--~~~~~L~~l~l~~n~~~  113 (124)
                        .+++|++|+++.+.       .+.  ...+  ..+++|++|++..|.+.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~  265 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ  265 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence              67888888875321       010  0111  24678888888777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.95  E-value=3.8e-05  Score=50.23  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=72.6

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      ..+..++.+......      ++...+..+.+|+.+.+..+ ++..  ..+..+.+|+.+++..+ +......+|..|.+
T Consensus       273 ~~~~~l~~~~~~~~~------i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          273 YNCSGLKKVIYGSVI------VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS  344 (394)
T ss_dssp             TTCTTCCEEEECSSE------ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred             ccccccceeccCcee------eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence            456666666554443      23346778889999988765 4443  46778889999998754 55455677888999


Q ss_pred             CCEEeccCCc-cCChhhhcCCCCCCEEeeecc
Q 048165           80 LQVLDLSGNQ-NLTTLGLANLPNLKTLDLRDC  110 (124)
Q Consensus        80 L~~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n  110 (124)
                      |+.+.+..+- .+....+..|.+|+.+++..+
T Consensus       345 L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          345 LSNINFPLSLRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECCCTTCCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCEEEECccccEehHHHhhCCCCCCEEEECCC
Confidence            9999987664 666778889999999988654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.80  E-value=2.5e-05  Score=46.59  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=70.8

Q ss_pred             CCCcCcEEecccc-ccccCCc----ccccccccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccch
Q 048165            3 NLRYLQVLDLSAN-YNITSGS----LTRLGLANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGSL   71 (124)
Q Consensus         3 ~~~~l~~l~l~~~-~~~~~~~----~~~~~~~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~~   71 (124)
                      +-+.|++|+++.+ .  +...    +. ..+..-+.|+.|++++|.+.+.      ..+..-..|++|++++|.+.+...
T Consensus        39 ~n~~L~~L~L~~nn~--igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           39 DDTDLKEVNINNMKR--VSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             TCSSCCEEECTTCCS--SCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             cCCCccEEECCCCCC--CCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3467889999875 5  4311    12 3445567799999999998872      244556789999999999886544


Q ss_pred             hc----ccCCCCCCEEeccCCc--cCC-------hhhhcCCCCCCEEeeeccC
Q 048165           72 EG----LANLTNLQVLDLSGNQ--NLT-------TLGLANLPNLKTLDLRDCG  111 (124)
Q Consensus        72 ~~----~~~~~~L~~l~l~~~~--~~~-------~~~~~~~~~L~~l~l~~n~  111 (124)
                      ..    +.....|+.|++.++.  .++       ...+..-+.|..++++.|.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            33    4455679999997542  222       2234556788888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.79  E-value=0.00025  Score=46.39  Aligned_cols=103  Identities=14%  Similarity=0.102  Sum_probs=58.8

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .+|..++.+.+..+.  .  .+....+..+..++.+......+.. ..+..+.+|+.+.+..+ +......+|..|.+|+
T Consensus       250 ~~~~~l~~~~~~~~~--~--~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~  323 (394)
T 4fs7_A          250 YGCTDLESISIQNNK--L--RIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV  323 (394)
T ss_dssp             TTCSSCCEEEECCTT--C--EECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             cccccceeEEcCCCc--c--eeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCC
Confidence            456666666665553  1  2233455666666666655443222 23455666777776554 3334445666777777


Q ss_pred             EEeccCCc-cCChhhhcCCCCCCEEeeecc
Q 048165           82 VLDLSGNQ-NLTTLGLANLPNLKTLDLRDC  110 (124)
Q Consensus        82 ~l~l~~~~-~~~~~~~~~~~~L~~l~l~~n  110 (124)
                      .+.+..+- .++...+..|.+|+.+.+..+
T Consensus       324 ~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          324 SIDLPYLVEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             EECCCTTCCEECTTTTTTCTTCCEECCCTT
T ss_pred             EEEeCCcccEEhHHhccCCCCCCEEEECcc
Confidence            77775443 555556667777777766544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.74  E-value=0.00017  Score=46.84  Aligned_cols=95  Identities=17%  Similarity=0.203  Sum_probs=70.9

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |.+|.+++.+.+..+-   . .++...+.+|.+|+.+.+..+.++..  ..+..+.+|+.+.+..+ +......+|..|.
T Consensus       259 F~~~~~l~~i~l~~~i---~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  333 (379)
T 4h09_A          259 LQNCTALKTLNFYAKV---K-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK  333 (379)
T ss_dssp             TTTCTTCCEEEECCCC---S-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeehhccccccccc---e-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence            4567888888886553   3 34546788999999999998888774  47888999999999765 5545567888999


Q ss_pred             CCCEEeccCCc-cCChhhhcCCC
Q 048165           79 NLQVLDLSGNQ-NLTTLGLANLP  100 (124)
Q Consensus        79 ~L~~l~l~~~~-~~~~~~~~~~~  100 (124)
                      +|+.+.+..+- .++...+..|.
T Consensus       334 ~L~~i~ip~~v~~I~~~aF~~c~  356 (379)
T 4h09_A          334 ALSTISYPKSITLIESGAFEGSS  356 (379)
T ss_dssp             TCCCCCCCTTCCEECTTTTTTSS
T ss_pred             CCCEEEECCccCEEchhHhhCCC
Confidence            99999886553 55555666664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.46  E-value=0.00028  Score=42.09  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=60.0

Q ss_pred             ccccCccEEeccCC-CCcc------hhhhccCCCCCEEEccCccccccchhccc----CCCCCCEEeccCCc-------c
Q 048165           29 ANLTNLKKLDLDGC-GITT------IQGLAKLKNLEALDLSSNYYLHGSLEGLA----NLTNLQVLDLSGNQ-------N   90 (124)
Q Consensus        29 ~~~~~l~~L~l~~~-~l~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----~~~~L~~l~l~~~~-------~   90 (124)
                      ..-+.|+.|+++++ .+..      ...+..-..|+.|++++|.+.+.....+.    ....|++|++..|.       .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44578999999986 7765      13566667899999999999865544433    56899999999996       1


Q ss_pred             CChhhhcCCCCCCEEeeecc
Q 048165           91 LTTLGLANLPNLKTLDLRDC  110 (124)
Q Consensus        91 ~~~~~~~~~~~L~~l~l~~n  110 (124)
                      + ...+..-..|+.|+++++
T Consensus       118 l-a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 L-LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             H-HHHTTTTCCCSEEECCCC
T ss_pred             H-HHHHhhCCceeEEECCCC
Confidence            2 234455678999999865

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.00  E-value=0.0023  Score=35.49  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=27.2

Q ss_pred             CccEEeccCCCCcch--hhhccCCCCCEEEccCcccc
Q 048165           33 NLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYL   67 (124)
Q Consensus        33 ~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~   67 (124)
                      +++.|+|++|.++.+  ..+..+++|+++++.+|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            578888888888884  35667888888888888654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.47  E-value=0.26  Score=25.92  Aligned_cols=41  Identities=17%  Similarity=0.146  Sum_probs=24.9

Q ss_pred             ccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCc
Q 048165           23 LTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSN   64 (124)
Q Consensus        23 ~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~   64 (124)
                      +....|.+|.+|+.+.+-.+ ++.  -..+..+.+|+.+.+.+.
T Consensus        11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A           11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            44456667777777777654 222  245666777777766553

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=89.16  E-value=0.79  Score=24.01  Aligned_cols=39  Identities=18%  Similarity=0.052  Sum_probs=24.1

Q ss_pred             hhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCC
Q 048165           49 GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN   88 (124)
Q Consensus        49 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   88 (124)
                      .+..+..|+.+.+..+ ++.....+|..|.+|+.+.+...
T Consensus        15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A           15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            5566677777776654 22244456667777777766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	9e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	5e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.4 bits (145), Expect = 2e-12
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 30  NLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
           NL NL  L L    I+ I  ++ L  L+ L  ++N      +  LANLTN+  L    NQ
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQ 362

Query: 90  NLTTLGLANLPNLKTLDLRD 109
                 LANL  +  L L D
Sbjct: 363 ISDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 5e-11
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
           NL+ L  L L  N NI+  S     +++LT L++L      ++ +  LA L N+  L   
Sbjct: 305 NLKNLTYLTLYFN-NISDIS----PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAG 359

Query: 63  SNYYLHGSLEGLANLTNLQVLDLSGN 88
            N      L  LANLT +  L L+  
Sbjct: 360 HNQI--SDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 6e-09
 Identities = 37/145 (25%), Positives = 52/145 (35%), Gaps = 29/145 (20%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKN----- 55
           LA+L  L  LDL+ N       L+      LT L +L L    I+ I  LA L       
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 56  -----------------LEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLAN 98
                            L  L L  N      +  +++LT LQ L  + N+      LAN
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFANNKVSDVSSLAN 349

Query: 99  LPNLKTLDLRDCGITTIQGIQQFTS 123
           L N+  L      I+ +  +   T 
Sbjct: 350 LTNINWLSAGHNQISDLTPLANLTR 374

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 3e-08
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 29  ANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
             L    K  L    +T       L  +  L          S++G+  L NL  ++ S N
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 76

Query: 89  QNLTTLGLANLPNLKTLDLRDC 110
           Q      L NL  L  + + + 
Sbjct: 77  QLTDITPLKNLTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 5e-08
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS 86
            +L  +  L  D  GI +I G+  L NL  ++ S+N      +  L NLT L  + ++
Sbjct: 40 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMN 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 1e-07
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           +++L  LQ L  + N  ++  S     LANLTN+  L      I+ +  LA L  +  L 
Sbjct: 325 VSSLTKLQRLFFANN-KVSDVS----SLANLTNINWLSAGHNQISDLTPLANLTRITQLG 379

Query: 61  LSSN 64
           L+  
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-05
 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 29  ANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
           A LTNL+ L      I+ I  L  L NL+ L L+ N      +  LA+LTNL  LDL+ N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANN 251

Query: 89  QNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTSY 124
           Q      L+ L  L  L L    I+ I  +   T+ 
Sbjct: 252 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 287

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 9/50 (18%), Positives = 19/50 (38%)

Query: 74  LANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
             +L  +  L        +  G+  L NL  ++  +  +T I  ++  T 
Sbjct: 40  QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 89

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 5e-04
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
             +L  +  L       I S      G+  L NL +++     +T I  L  L  L  + 
Sbjct: 40  QTDLDQVTTLQAD-RLGIKSID----GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL 94

Query: 61  LSSNYYLH 68
           +++N    
Sbjct: 95  MNNNQIAD 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 5e-09
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 27/112 (24%)

Query: 7   LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYY 66
           +Q LD+     ++      L L  L   + + LD CG+T       +             
Sbjct: 4   IQSLDIQCE-ELSDARWAEL-LPLLQQCQVVRLDDCGLTE-ARCKDI------------- 47

Query: 67  LHGSLEGLANLTNLQVLDLSGNQ-------NLTTLGLANLPNLKTLDLRDCG 111
                  L     L  L+L  N+        +          ++ L L++C 
Sbjct: 48  ----SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-07
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 55  NLEALDLSSNYYLHGSLEGLA-NLTNLQVLDLSGNQNLTTLG-------LANLPNLKTLD 106
           ++++LD+            L   L   QV+ L     LT          L   P L  L+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELN 61

Query: 107 LRDCGIT 113
           LR   + 
Sbjct: 62  LRSNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 3e-05
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 10/77 (12%)

Query: 1  LANLRYLQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGIT--TIQGLAKL--- 53
          L  L+  QV+ L     +T      +   L     L +L+L    +    +  + +    
Sbjct: 23 LPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81

Query: 54 --KNLEALDLSSNYYLH 68
              ++ L L +     
Sbjct: 82 PSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 3e-05
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 28/112 (25%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLG--LANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
               L+VL L+   +++  S + L   L    +L++LDL    +    G+ +L  +E++ 
Sbjct: 367 PGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGD-AGILQL--VESVR 422

Query: 61  LSSNYYLHGSLEGLANLTNLQVLDLSGN-------QNLTTLGLANLPNLKTL 105
                              L+ L L            L  L   + P+L+ +
Sbjct: 423 Q--------------PGCLLEQLVLYDIYWSEEMEDRLQAL-EKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 4e-05
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 27/94 (28%)

Query: 30  NLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ 89
             + L+ L L  C ++     + L                    L    +L+ LDLS N 
Sbjct: 367 PGSVLRVLWLADCDVSD-SSCSSL-----------------AATLLANHSLRELDLSNNC 408

Query: 90  NLTTLGLANL--------PNLKTLDLRDCGITTI 115
            L   G+  L          L+ L L D   +  
Sbjct: 409 -LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 3e-08
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 38  DLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG 95
           DL    I     QGL +LK L +L++S N  L G +    NL    V   + N+ L    
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

Query: 96  L 96
           L
Sbjct: 309 L 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 6e-05
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 15  NYNITSGSLTRLGLANLTNLKKLDLDGCGIT-TIQGLAKLKNLEALDLSSNYYLHGS 70
             N   G+L + GL  L  L  L++    +   I     L+  +    ++N  L GS
Sbjct: 252 RNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 9e-05
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 54  KNLEALDLSSNYYLHGSL-EGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRD-- 109
           KNL  LDL +N  ++G+L +GL  L  L  L++S N     +    NL         +  
Sbjct: 244 KNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

Query: 110 --CGI 112
             CG 
Sbjct: 303 CLCGS 307

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 1e-07
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
           LANL+ L  L  D   I+ I  LA L NL  + L +N      +  LAN +NL ++ L+ 
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLT- 225

Query: 88  NQ 89
           NQ
Sbjct: 226 NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 7e-07
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 8  QVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYL 67
            + ++A  +  + ++T    A+L  +  L   G G+TTI+G+  L NL  L+L  N   
Sbjct: 20 NAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT 76

Query: 68 H 68
           
Sbjct: 77 D 77

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 70  SLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRD 109
            +  LA+L NL  + L  NQ      LAN  NL  + L +
Sbjct: 187 DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 75  ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
             L N   +    +    T+  A+L  + TL     G+TTI+G+Q   +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN 64

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 7e-06
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
            LA+L NL ++ L    I+ +  LA   NL  + L+
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 2e-04
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
           I  I     L N   +    +          A+L  +  L   G    T  G+  L NL 
Sbjct: 9   INVIFPDPALANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 104 TLDLRDCGITTIQGIQQFTSY 124
            L+L+D  IT +  ++  T  
Sbjct: 67  GLELKDNQITDLAPLKNLTKI 87

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 5e-04
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 74  LANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
           LANL+ L  L    N+      LA+LPNL  + L++  I+ +  +   ++
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSN 218

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 3e-07
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 53  LKNLEALDLSSNYYLHGSLEGL-ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCG 111
             +LE L++S+N      L  L A    L+ L  S N  L  +      NLK L +    
Sbjct: 283 PPSLEELNVSNN-----KLIELPALPPRLERLIASFNH-LAEVP-ELPQNLKQLHVEYNP 335

Query: 112 ITTI 115
           +   
Sbjct: 336 LREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 3e-07
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 3   NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLS 62
               L+ L++S N       L  L  A    L++L      +  +  L   +NL+ L + 
Sbjct: 282 LPPSLEELNVSNN------KLIELP-ALPPRLERLIASFNHLAEVPEL--PQNLKQLHVE 332

Query: 63  SNYYLHGSLEGLANLTNLQV 82
            N  L    +   ++ +L++
Sbjct: 333 YN-PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 76  NLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
              +L+ L++S N+ L  L  A  P L+ L      +  +
Sbjct: 282 LPPSLEELNVSNNK-LIELP-ALPPRLERLIASFNHLAEV 319

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 25  RLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGL-ANLTNLQVL 83
           RL         +L+L+  G++++  L    +LE+L  S N     SL  L     +L+ L
Sbjct: 31  RLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCN-----SLTELPELPQSLKSL 83

Query: 84  DLSGNQNLTTLGLANLPNL 102
            +  N       L  L   
Sbjct: 84  LVDNNNLKALSDLPPLLEY 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 5e-04
 Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 78  TNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTI 115
                L+L+    L++L     P+L++L      +T +
Sbjct: 38  RQAHELELNNL-GLSSLP-ELPPHLESLVASCNSLTEL 73

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 28  LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSS 63
           LA LT L+ L L    I+ ++ LA LKNL+ L+L S
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 3e-05
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 41  GCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSG 87
              I+ I  LA L  L+ L LS N+     L  LA L NL VL+L  
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 4e-05
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
           I  I            +L               L ++  +  + +   +  G+  LPN+ 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71

Query: 104 TLDLRDCGITTIQGIQQFTSY 124
            L L    +T I+ +    + 
Sbjct: 72  KLFLNGNKLTDIKPLANLKNL 92

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 7e-05
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 70  SLEGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDL 107
            +  LA LT LQ L LS N  ++ L  LA L NL  L+L
Sbjct: 170 DIVPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 9e-05
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSN 64
             L ++ ++  +   I ++QG+  L N+  L L+ N
Sbjct: 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN 78

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-06
 Identities = 11/53 (20%), Positives = 14/53 (26%)

Query: 42  CGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL 94
                            LD+S          GL NL  L+       + L TL
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 6e-06
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 74  LANLTNLQVLDLSGNQNLTTL---GLANLPNLKTLDLRDC 110
               +   +LD+S  + + +L   GL NL  L+     + 
Sbjct: 197 FHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 21  GSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYL 67
             L        +    LD+    I ++   GL  LK L A    +   L
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.001
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 11/57 (19%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLE 57
                   +LD+S    I   SL   GL NL  L+              L KL  LE
Sbjct: 197 FHGASGPVILDISRT-RIH--SLPSYGLENLKKLRARST--------YNLKKLPTLE 242

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-06
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 30  NLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
            + +  +++ D   +T +   L K  +   L LS N     SL  L   T L  L+L   
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 89  QNLTTLGLANLPNL 102
           +         LP L
Sbjct: 66  ELTKLQVDGTLPVL 79

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 50  LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGN 88
           L  L+NL+ L L  N       +G      L    L GN
Sbjct: 168 LNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.003
 Identities = 12/49 (24%), Positives = 14/49 (28%), Gaps = 1/49 (2%)

Query: 62  SSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTLDLRD 109
           ++N         L  L NL  L L  N   T   G      L    L  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.004
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 78  TNLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
            +  +L LS N     +   L     L  L+L    +T +Q       
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV 78

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 6e-06
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 2  ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDL 61
            L       L    N+T      +   +L  +  L  D  GI +I G+  L NL  ++ 
Sbjct: 15 TALAEKMKTVLGKT-NVTD----TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINF 69

Query: 62 SSNYY 66
          S+N  
Sbjct: 70 SNNQL 74

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 10/49 (20%), Positives = 17/49 (34%)

Query: 75  ANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS 123
             L       L       T+   +L  + TL     GI +I G++   +
Sbjct: 15  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN 63

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 9e-05
 Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 2/37 (5%)

Query: 70  SLEGLANLTNLQVLDLSGNQNLTTL-GLANLPNLKTL 105
            L+ LANLT L+ LD+S N+ ++ +  LA L NL++L
Sbjct: 164 DLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 1e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 27  GLANLTNLKKLDLDGCGITTIQGLAKLKNLEAL 59
            LANLT L++LD+    ++ I  LAKL NLE+L
Sbjct: 167 PLANLTTLERLDISSNKVSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 5e-04
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 41  GCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL 83
              +T ++ LA L  LE LD+SSN      +  LA LTNL+ L
Sbjct: 159 SNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 33.5 bits (75), Expect = 0.003
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 44  ITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLK 103
           I  I     L       L              +L  +  L        +  G+  L NL 
Sbjct: 8   INQIFTDTALAEKMKTVLGKTNV--TDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLT 65

Query: 104 TLDLRDCGITTIQGIQQFTSY 124
            ++  +  +T I  ++  T  
Sbjct: 66  QINFSNNQLTDITPLKNLTKL 86

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 23/86 (26%)

Query: 25  RLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD 84
                N    ++LDL G  I  I+ L                        A L     +D
Sbjct: 11  AAQYTNAVRDRELDLRGYKIPVIENL-----------------------GATLDQFDAID 47

Query: 85  LSGNQNLTTLGLANLPNLKTLDLRDC 110
            S N+     G   L  LKTL + + 
Sbjct: 48  FSDNEIRKLDGFPLLRRLKTLLVNNN 73

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 76  NLTNLQVLDLSGNQNLTTLG--LANLPNLKTLDLRDCGITTIQGIQQFTS 123
           N    + LDL G + +  +    A L     +D  D  I  + G      
Sbjct: 16  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 64

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 35  KKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTL 94
           + L L    +T +  L +L  +  LDLS N  L      LA L  L+VL  S N      
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD 59

Query: 95  GLANLPNLKTLDLRDCGITTIQGIQQFTS 123
           G+ANLP L+ L L +  +     IQ   S
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVS 88

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALD 60
           L  L  +  LDLS N            LA L  L+ L      +  + G+A L  L+ L 
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 61  LSSNYYLHGS-LEGLANLTNLQVLDLSGNQ-----NLTTLGLANLPNLKTL 105
           L +N     + ++ L +   L +L+L GN       +       LP++ ++
Sbjct: 72  LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 4e-05
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 19  TSGSLTRLGLANLTNLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGSLEGLAN 76
           +   L ++      +   LDL    IT I+      LKNL  L L +N     S    A 
Sbjct: 18  SDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77

Query: 77  LTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQ 116
           L  L+ L LS NQ L  L       L+ L + +  IT ++
Sbjct: 78  LVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVR 116

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.9 bits (89), Expect = 5e-05
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 28 LANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLH 68
          L+ L   K L L    I  I  L+ ++NL  L L  N    
Sbjct: 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK 84

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 47  IQGLAKLKNLEALDLSSNYYLHGSL-------EGLANLTNLQVLDLSGNQNLTTL-GLAN 98
           I+   + K++ A +      LHG +         L+ L   + L LS   N+  +  L+ 
Sbjct: 11  IRIFEERKSVVATEAE-KVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKISSLSG 68

Query: 99  LPNLKTLDLRDC 110
           + NL+ L L   
Sbjct: 69  MENLRILSLGRN 80

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 76  NLTNLQVLDLSGN-QNLTTL--GLANLPNLKTLDLRDCGITTIQGIQQFTS 123
             T  + ++L G    +  +   L+ L   K L L    I  I  +    +
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMEN 71

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 3e-04
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 5/98 (5%)

Query: 1   LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG---LAKLKNLE 57
              L    V+      +     L      +   ++ +DL    I        L++   L+
Sbjct: 17  TGRLLSQGVIAFRCPRSFMDQPL--AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74

Query: 58  ALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLG 95
            L L         +  LA  +NL  L+LSG    +   
Sbjct: 75  NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 5e-04
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 25  RLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLA-NLTNLQVL 83
           +L ++   +  +  LD  G+ +   L        L+  S+  +  +L  +  N+  L  L
Sbjct: 13  KLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSS--MAATLRIIEENIPELLSL 70

Query: 84  DLSGNQNLTTLGL----ANLPNLKTLDLRDCGITTIQGIQ 119
           +LS N+      +       PNLK L+L    + + + + 
Sbjct: 71  NLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 110

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 54  KNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ------NLTTLGLANLPNLKTLDL 107
           K+L+   +++          L    +++ + LSGN          +  +A+  +L+  + 
Sbjct: 8   KSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 108 RDCGITTIQG 117
            D     ++ 
Sbjct: 67  SDIFTGRVKD 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.74
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.4
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.4
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.4
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.4
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.34
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.08
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.05
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.45
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.46

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.4e-18  Score=102.32  Aligned_cols=116  Identities=22%  Similarity=0.188  Sum_probs=99.9

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCE
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQV   82 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   82 (124)
                      +++++|++++|.  +...++...|..+++|+.|++++|.+...  ..+..+++|+++++++|++....+..|..+++|++
T Consensus        29 ~~l~~L~Ls~N~--i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCC--CcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence            468999999999  76556556788999999999999999884  47778999999999999999777788999999999


Q ss_pred             EeccCCc--cCChhhhcCCCCCCEEeeeccCCCCcccccccc
Q 048165           83 LDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus        83 l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~  122 (124)
                      |++++|.  .+.+..+..+++|+++++++|++...+.+.++.
T Consensus       107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~  148 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA  148 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred             cccCCccccccCHHHhcCCcccccccccccccccccchHHHh
Confidence            9999998  665677889999999999999999887766543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.3e-18  Score=97.72  Aligned_cols=112  Identities=22%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .++.++++|++++|.  ++ .++ ..+..+++|+.|++++|.++..+.+..+++|+++++++|.+....+..+..+++++
T Consensus        15 ~n~~~lr~L~L~~n~--I~-~i~-~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYK--IP-VIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSC--CC-SCC-CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCC--CC-ccC-ccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccc
Confidence            356789999999998  76 555 45677999999999999999988888999999999999999855444556789999


Q ss_pred             EEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCccc
Q 048165           82 VLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        82 ~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      ++++++|.  .+. ...+..+++|+++++++|+++..+.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccc
Confidence            99999997  332 2467789999999999999987764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=4.1e-16  Score=85.66  Aligned_cols=104  Identities=32%  Similarity=0.396  Sum_probs=87.5

Q ss_pred             cEEeccccccccCCcccccccccccCccEEeccCCCCcch-hhhccCCCCCEEEccCccccccchhcccCCCCCCEEecc
Q 048165            8 QVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI-QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLS   86 (124)
Q Consensus         8 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   86 (124)
                      ++|++++|.  ++ .++  .+..+++++.|++++|.++.. +.+..+++|+.+++++|.+.+.  ..+..+++|++++++
T Consensus         1 R~L~Ls~n~--l~-~l~--~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKD--LT-VLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSC--CS-SCC--CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECC
T ss_pred             CEEEcCCCC--CC-CCc--ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--CccccccccCeEECC
Confidence            578999998  76 445  478899999999999999995 5788999999999999999843  358899999999999


Q ss_pred             CCc--cCC-hhhhcCCCCCCEEeeeccCCCCcccc
Q 048165           87 GNQ--NLT-TLGLANLPNLKTLDLRDCGITTIQGI  118 (124)
Q Consensus        87 ~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~  118 (124)
                      +|+  .+. ...+..+++|+.+++++|++++.+.+
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~  108 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  108 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcCccH
Confidence            998  342 34678899999999999999876653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3e-16  Score=97.04  Aligned_cols=116  Identities=29%  Similarity=0.287  Sum_probs=83.7

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      .+.+|+.+++++|.  +. .++...+..+++++.|++++|.++..  ..+..+++|+.+++.+|.+.+..|..+..++++
T Consensus       127 ~~~~L~~l~l~~N~--l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         127 GLAALQYLYLQDNA--LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TCTTCCEEECCSSC--CC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhcccchhhhcccc--cc-ccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhc
Confidence            34556666666666  54 34435566677777777777777763  356677788888888888777777777788888


Q ss_pred             CEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccc
Q 048165           81 QVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQF  121 (124)
Q Consensus        81 ~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l  121 (124)
                      +++++++|.  .+.+..+..+++|+.+++++|++.+.+.+.++
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l  246 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL  246 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             ccccccccccccccccccccccccCEEEecCCCCCCCccchHH
Confidence            888888887  55466778888888888888888877766544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.1e-16  Score=94.91  Aligned_cols=94  Identities=26%  Similarity=0.197  Sum_probs=67.3

Q ss_pred             ccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCCE
Q 048165           29 ANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLKT  104 (124)
Q Consensus        29 ~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~~  104 (124)
                      ..+.+++.+++++|.++..  ..+..++.++.+++++|.+.+..+..+..+++|++|++++|+  .+ +..+..+++|+.
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~  199 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPF  199 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSE
T ss_pred             ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCccc-ChhHCCCCCCCE
Confidence            3444455555555555442  234457788888888888886666777888899999998887  55 566777888999


Q ss_pred             EeeeccCCCCccccccccc
Q 048165          105 LDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus       105 l~l~~n~~~~~~~~~~l~~  123 (124)
                      +++++|++.+.+.+.++..
T Consensus       200 L~L~~Np~~CdC~~~~l~~  218 (266)
T d1p9ag_         200 AFLHGNPWLCNCEILYFRR  218 (266)
T ss_dssp             EECCSCCBCCSGGGHHHHH
T ss_pred             EEecCCCCCCCcchHHHHH
Confidence            9999999888877665543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1.1e-14  Score=85.87  Aligned_cols=114  Identities=35%  Similarity=0.448  Sum_probs=66.5

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhcc----------------------CCCCCEEE
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAK----------------------LKNLEALD   60 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~----------------------~~~L~~l~   60 (124)
                      .+++|+.|++++|.  +.+ ++  .+..+++|+.|++++|.+...+.+..                      +++|+.++
T Consensus        60 ~l~nL~~L~Ls~N~--l~~-~~--~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  134 (199)
T d2omxa2          60 YLNNLTQINFSNNQ--LTD-IT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE  134 (199)
T ss_dssp             GCTTCCEEECCSSC--CCC-CG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cCCCcCcCcccccc--ccC-cc--cccCCcccccccccccccccccccccccccccccccccccccccccchhhhhHHhh
Confidence            45667777777766  542 22  25556666666666665555444444                      45555555


Q ss_pred             ccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165           61 LSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus        61 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~  123 (124)
                      +++|.+..  ...+..+++++.+++.+|.......+..+++|+.|++++|++++++.+..+++
T Consensus       135 l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~  195 (199)
T d2omxa2         135 LSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN  195 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             hhhhhhcc--cccccccccccccccccccccCCccccCCCCCCEEECCCCCCCCCccccCCCC
Confidence            55555442  12345556666666666652223346777888888888888877766655543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.6e-15  Score=85.44  Aligned_cols=116  Identities=16%  Similarity=0.081  Sum_probs=91.8

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCC-CCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGC-GITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .+...+.+..+++.  .. .++ ..+..+++++.|+++++ .++.+  ..+..+++|+.|++++|.+....+.+|..+++
T Consensus         6 ~c~~~~~l~c~~~~--~~-~~p-~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3           6 CPHGSSGLRCTRDG--AL-DSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             CCSSSSCEECCSSC--CC-TTT-TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             CcCCCCeEEecCCC--Cc-cCc-ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccc
Confidence            34556667777766  54 445 46778899999999876 48874  46888999999999999999877888999999


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~  123 (124)
                      |+++++++|+  .+....+. ...++.|++++|++...+.+.++..
T Consensus        82 L~~L~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C~C~~~~l~~  126 (156)
T d2ifga3          82 LSRLNLSFNALESLSWKTVQ-GLSLQELVLSGNPLHCSCALRWLQR  126 (156)
T ss_dssp             CCEEECCSSCCSCCCSTTTC-SCCCCEEECCSSCCCCCGGGHHHHH
T ss_pred             ccceeccCCCCcccChhhhc-cccccccccCCCcccCCchHHHHHH
Confidence            9999999998  56343443 4479999999999998888777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=2.3e-14  Score=84.41  Aligned_cols=109  Identities=30%  Similarity=0.343  Sum_probs=81.7

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      ++++++|+++++.  +. .+.  .++.+++|++|++++|+++..+.+..+++|+++++++|.+...  ..+..++.|+.+
T Consensus        39 l~~l~~L~l~~~~--i~-~l~--~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLG--IK-SID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSC--CC-CCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             hcCCCEEECCCCC--CC-Ccc--ccccCCCcCcCccccccccCcccccCCcccccccccccccccc--cccccccccccc
Confidence            5688999999998  66 344  4778999999999999999987799999999999999987633  236677777777


Q ss_pred             eccCCccCChhhhcCCCCCCEEeeeccCCCCccccc
Q 048165           84 DLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQ  119 (124)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  119 (124)
                      ++.++.......+..+++|+.+++++|.+..++.+.
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~  147 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS  147 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGT
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhccccccc
Confidence            777766322344566666777777666666555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=3e-14  Score=84.58  Aligned_cols=117  Identities=30%  Similarity=0.341  Sum_probs=81.8

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCcccccc------------
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHG------------   69 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~------------   69 (124)
                      ..+++|++|++++|.  +.+ ++  .+..+++|+.|++++|+++.++.+..+++|+.+++.+|.+...            
T Consensus        65 ~~l~~L~~L~L~~n~--i~~-l~--~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l  139 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNK--LTD-IK--PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL  139 (210)
T ss_dssp             GGCTTCCEEECCSSC--CCC-CG--GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred             hhCCCCCEEeCCCcc--ccC-cc--ccccCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            357788888888887  663 33  3567888888888888888877777777888888877755421            


Q ss_pred             --------chhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165           70 --------SLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus        70 --------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~  123 (124)
                              .+..+..+++|+.+++.+|.......+..+++|+.|++++|.+++++++..+.+
T Consensus       140 ~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~  201 (210)
T d1h6ta2         140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKN  201 (210)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCCCChhhcCCCC
Confidence                    112233456778888877762223357788888999998888888776665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.1e-14  Score=79.89  Aligned_cols=87  Identities=32%  Similarity=0.329  Sum_probs=74.8

Q ss_pred             cEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEeeeccCCCC
Q 048165           35 KKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        35 ~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      +.|++++|+++.++.+..+++|+++++++|.+. ..|..++.+++|+.+++++|.....+.+..+++|+++++++|.+.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCC
Confidence            578999999999888899999999999999998 5677788999999999999982223468899999999999999998


Q ss_pred             cccccccc
Q 048165          115 IQGIQQFT  122 (124)
Q Consensus       115 ~~~~~~l~  122 (124)
                      ++.+..+.
T Consensus        80 ~~~~~~l~   87 (124)
T d1dcea3          80 SAAIQPLV   87 (124)
T ss_dssp             SSTTGGGG
T ss_pred             CCCchhhc
Confidence            87655443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=3.1e-14  Score=84.49  Aligned_cols=79  Identities=33%  Similarity=0.366  Sum_probs=66.3

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      +.+++.+++++|.  +. .+.  .+..+++|++|++++|+++..+.+..+++|+++++++|.+.+ .+ .+..+++|+.+
T Consensus        45 L~~L~~L~l~~~~--i~-~l~--~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSD--IK-SVQ--GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSC--CC-CCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCC--CC-Cch--hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc-cc-ccccccccccc
Confidence            4578899999998  66 333  467899999999999999998778899999999999999874 33 57788899999


Q ss_pred             eccCCc
Q 048165           84 DLSGNQ   89 (124)
Q Consensus        84 ~l~~~~   89 (124)
                      ++.++.
T Consensus       118 ~l~~~~  123 (210)
T d1h6ta2         118 SLEHNG  123 (210)
T ss_dssp             ECTTSC
T ss_pred             cccccc
Confidence            988876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=88.37  Aligned_cols=81  Identities=32%  Similarity=0.291  Sum_probs=58.3

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD   84 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   84 (124)
                      +++++|++++|.  +. .+++..+..+++|++|++++|+++.++.+..+++|++|++++|.+.. .+..+..+++|+.++
T Consensus        31 ~~l~~L~Ls~N~--i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENL--LY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSC--CS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCc--CC-CcCHHHhhccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            357888888887  66 45546677888888888888888876666677788888888887763 345555666677776


Q ss_pred             ccCCc
Q 048165           85 LSGNQ   89 (124)
Q Consensus        85 l~~~~   89 (124)
                      +.++.
T Consensus       107 l~~~~  111 (266)
T d1p9ag_         107 VSFNR  111 (266)
T ss_dssp             CCSSC
T ss_pred             ccccc
Confidence            66654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.1e-14  Score=86.54  Aligned_cols=114  Identities=22%  Similarity=0.206  Sum_probs=96.2

Q ss_pred             CCCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            1 LANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         1 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      |+++++|++++++.|.  +. .++...+..+.+|+.+++++|.++..  ..+..+++|+.+++++|.+.+..+..+..++
T Consensus       101 ~~~l~~L~~L~l~~n~--~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~  177 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCG--LQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (284)
T ss_dssp             TTTCTTCCEEECTTSC--CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hcccccCCEEecCCcc--cc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc
Confidence            4678999999999998  65 33435677889999999999999884  3577888999999999999877778888999


Q ss_pred             CCCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           79 NLQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        79 ~L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +|+.+++.+|.  .+.+..+..+++++.+++++|.+..++.
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             ccchhhhhhccccccChhHhhhhhhcccccccccccccccc
Confidence            99999999997  4557788999999999999999988753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=5.2e-14  Score=82.44  Aligned_cols=105  Identities=20%  Similarity=0.239  Sum_probs=88.1

Q ss_pred             CcEEeccccccccCCcccccccccccCccEEeccCCCCcc-h--hhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            7 LQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT-I--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         7 l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~-~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      .++++.+++.  ++ .+|+ .+.  +++++|++++|.++. +  ..+..+++|+.|++++|.+....+..+..+++|++|
T Consensus        10 ~~~v~Cs~~~--L~-~iP~-~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_          10 GTTVDCTGRG--LK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TTEEECTTSC--CS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCEEEEeCCC--cC-ccCC-CCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccccee
Confidence            4678888887  66 6673 332  679999999999975 3  467889999999999999998878888899999999


Q ss_pred             eccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           84 DLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        84 ~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      ++++|+  .+.+..+..+++|++|++++|.++.++.
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             eeccccccccCHHHHhCCCcccccccCCccccccCH
Confidence            999998  6656678999999999999999998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=4.2e-13  Score=85.31  Aligned_cols=91  Identities=31%  Similarity=0.342  Sum_probs=64.2

Q ss_pred             ccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEeeecc
Q 048165           31 LTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDC  110 (124)
Q Consensus        31 ~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n  110 (124)
                      +..++.+++..|.++.+..+..+++++.+++++|.+.+..  .+..+++|++|++++|.......+..+++|+.|++++|
T Consensus       284 ~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHN  361 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCC
Confidence            3334444444444444444566778888888888887542  36788999999999997222346888999999999999


Q ss_pred             CCCCccccccccc
Q 048165          111 GITTIQGIQQFTS  123 (124)
Q Consensus       111 ~~~~~~~~~~l~~  123 (124)
                      ++++++++..+++
T Consensus       362 ~l~~l~~l~~l~~  374 (384)
T d2omza2         362 QISDLTPLANLTR  374 (384)
T ss_dssp             CCCBCGGGTTCTT
T ss_pred             cCCCChhhccCCC
Confidence            9998877666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=1.4e-12  Score=78.04  Aligned_cols=115  Identities=31%  Similarity=0.406  Sum_probs=79.1

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCc----------------------chhhhccCCCCCEE
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGIT----------------------TIQGLAKLKNLEAL   59 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~----------------------~~~~~~~~~~L~~l   59 (124)
                      ..+++++.+++++|.  +. .++  .+..+++++.++++++...                      ....+..+++|+++
T Consensus        82 ~~l~~l~~l~~~~n~--~~-~i~--~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L  156 (227)
T d1h6ua2          82 KNLTKITELELSGNP--LK-NVS--AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL  156 (227)
T ss_dssp             TTCCSCCEEECCSCC--CS-CCG--GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccccc--cc-ccc--cccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccc
Confidence            456666666666665  43 233  3455666666666655443                      33345567788899


Q ss_pred             EccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165           60 DLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~  123 (124)
                      ++++|.+.+.  ..+..+++|+.+++++|+......+..+++|++|++++|++++++++..+.+
T Consensus       157 ~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~  218 (227)
T d1h6ua2         157 SIGNAQVSDL--TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSN  218 (227)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTT
T ss_pred             cccccccccc--hhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCcccccCCC
Confidence            9888877633  3477889999999999972223457889999999999999998887666543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-13  Score=77.65  Aligned_cols=94  Identities=24%  Similarity=0.340  Sum_probs=76.6

Q ss_pred             ccccccCccEEeccCCCCcchhh-hccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc--cCChhhhcCCCCCC
Q 048165           27 GLANLTNLKKLDLDGCGITTIQG-LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ--NLTTLGLANLPNLK  103 (124)
Q Consensus        27 ~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~L~  103 (124)
                      .+.....++.|++++|+++..+. ...+++|+.+++++|.+...  ..+..+++|++|++++|.  .+.+..+..+++|+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            35567789999999999999754 46788999999999999843  457889999999999998  45344567799999


Q ss_pred             EEeeeccCCCCcccccccc
Q 048165          104 TLDLRDCGITTIQGIQQFT  122 (124)
Q Consensus       104 ~l~l~~n~~~~~~~~~~l~  122 (124)
                      +|++++|.+.+++.+..+.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~  109 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLA  109 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGG
T ss_pred             cceeccccccccccccccc
Confidence            9999999999887655443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.40  E-value=4e-13  Score=83.78  Aligned_cols=104  Identities=27%  Similarity=0.312  Sum_probs=81.1

Q ss_pred             cCcEEeccccccccCC--cccccccccccCccEEeccC-CCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCCC
Q 048165            6 YLQVLDLSANYNITSG--SLTRLGLANLTNLKKLDLDG-CGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNL   80 (124)
Q Consensus         6 ~l~~l~l~~~~~~~~~--~~~~~~~~~~~~l~~L~l~~-~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L   80 (124)
                      +++.|+++++.  +.+  .+| ..+..+++|++|++++ |.+++  ++.+..+++|++|++++|.+.+..+..+..+.+|
T Consensus        51 ~v~~L~L~~~~--l~g~~~lp-~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLN--LPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCC--CSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEECCCCC--CCCCCCCC-hHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            57788888887  554  345 5678888899999886 66764  4578888889999998888887777777788888


Q ss_pred             CEEeccCCc---cCChhhhcCCCCCCEEeeeccCCC
Q 048165           81 QVLDLSGNQ---NLTTLGLANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        81 ~~l~l~~~~---~~~~~~~~~~~~L~~l~l~~n~~~  113 (124)
                      +.+++..|.   .+ +..+..++.++.+++++|.+.
T Consensus       128 ~~l~l~~N~~~~~~-p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         128 VTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             CEEECCSSEEESCC-CGGGGGCTTCCEEECCSSCCE
T ss_pred             cccccccccccccC-chhhccCcccceeeccccccc
Confidence            888888886   34 667888888888888888776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.40  E-value=2.3e-12  Score=80.01  Aligned_cols=108  Identities=24%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      +++++.|++++|.  .....+ ..+..++.++.|++++|.++..  ..+..+++|++|++++|.+. ..|..+..+++|+
T Consensus       170 ~~~L~~L~l~~n~--~~~~~~-~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~  245 (305)
T d1xkua_         170 PPSLTELHLDGNK--ITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ  245 (305)
T ss_dssp             CTTCSEEECTTSC--CCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             CCccCEEECCCCc--CCCCCh-hHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCC
Confidence            4566677777665  443333 4566677777777777777763  35666777778888777776 4466677777778


Q ss_pred             EEeccCCc--cCChhh------hcCCCCCCEEeeeccCCCCc
Q 048165           82 VLDLSGNQ--NLTTLG------LANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        82 ~l~l~~~~--~~~~~~------~~~~~~L~~l~l~~n~~~~~  115 (124)
                      +|++++|+  .++...      .....+|+.+++++|+++..
T Consensus       246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             EEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            88777776  332222      23445677777777777643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.40  E-value=1.8e-12  Score=80.51  Aligned_cols=109  Identities=27%  Similarity=0.340  Sum_probs=89.8

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcc--hhhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITT--IQGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      ..+++++.++++.|.  +. .++ .  ..+++++.|++++|....  ...+..++.++.+++++|.+.+..+..+..+++
T Consensus       147 ~~l~~L~~l~l~~n~--l~-~l~-~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         147 QGMKKLSYIRIADTN--IT-TIP-Q--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             GGCTTCCEEECCSSC--CC-SCC-S--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             ccccccCccccccCC--cc-ccC-c--ccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc
Confidence            356778889998887  55 344 2  236789999999988776  356778899999999999999777788889999


Q ss_pred             CCEEeccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           80 LQVLDLSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        80 L~~l~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      |++|++++|+  .+ +..+..+++|+.|++++|+++.++.
T Consensus       221 L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         221 LRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             CCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             ceeeeccccccccc-ccccccccCCCEEECCCCccCccCh
Confidence            9999999998  56 6688899999999999999988753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.40  E-value=4.3e-13  Score=83.62  Aligned_cols=110  Identities=25%  Similarity=0.346  Sum_probs=92.4

Q ss_pred             CCCCcCcEEeccc-cccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCC
Q 048165            2 ANLRYLQVLDLSA-NYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLT   78 (124)
Q Consensus         2 ~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   78 (124)
                      .++++|+.|++++ |.  +.+.+| ..+..+++|++|++++|.+...  ..+..+..|+.++++.|.+....|..+..++
T Consensus        73 ~~L~~L~~L~Ls~~N~--l~g~iP-~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINN--LVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGCTTCSEEEEEEETT--EESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hcCccccccccccccc--cccccc-cccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc
Confidence            4688999999997 66  666788 6789999999999999999883  4577889999999999999888889999999


Q ss_pred             CCCEEeccCCc---cCChhhhcCCCCC-CEEeeeccCCCCc
Q 048165           79 NLQVLDLSGNQ---NLTTLGLANLPNL-KTLDLRDCGITTI  115 (124)
Q Consensus        79 ~L~~l~l~~~~---~~~~~~~~~~~~L-~~l~l~~n~~~~~  115 (124)
                      +++.+++.+|.   .+ +..+..+..+ +.++++.|.++..
T Consensus       150 ~L~~l~l~~n~l~~~i-p~~~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         150 NLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             TCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             ccceeecccccccccc-cccccccccccccccccccccccc
Confidence            99999999997   45 6667777665 7888888877644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=2.2e-11  Score=72.63  Aligned_cols=117  Identities=32%  Similarity=0.416  Sum_probs=90.6

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccch----------
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSL----------   71 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~----------   71 (124)
                      ..+++|+.+++++|.  +.+ +.  .+..+++++.+++++|.++..+.+..+++|++++++++...+..+          
T Consensus        60 ~~l~~L~~L~ls~n~--i~~-~~--~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          60 QYLNNLIGLELKDNQ--ITD-LA--PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             GGCTTCCEEECCSSC--CCC-CG--GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             hcCCCCcEeecCCce--eec-cc--cccccccccccccccccccccccccccccccccccccccccccchhccccchhhh
Confidence            468999999999998  663 33  378899999999999999988888889999999999876542211          


Q ss_pred             ----------hcccCCCCCCEEeccCCccCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165           72 ----------EGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus        72 ----------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~  123 (124)
                                ..+..+++++++++.+|.......+..+++|+.|++++|.+.+++.+..+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~  196 (227)
T d1h6ua2         135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN  196 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             hchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChhhcCCCC
Confidence                      1233457788898888873334557889999999999999988877665543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=1.8e-11  Score=77.63  Aligned_cols=115  Identities=29%  Similarity=0.363  Sum_probs=76.2

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccc-------------
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGS-------------   70 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~-------------   70 (124)
                      +++++.+++++|.  +. .++  .+..+++++.+++++|.++..+.+..+++|++++++++.+.+..             
T Consensus       218 ~~~L~~L~l~~n~--l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         218 LTNLDELSLNGNQ--LK-DIG--TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             CTTCCEEECCSSC--CC-CCG--GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cCCCCEEECCCCC--CC-Ccc--hhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccc
Confidence            4566777777776  54 222  45566777777777777766655666667777777666554221             


Q ss_pred             -------hhcccCCCCCCEEeccCCccCChhhhcCCCCCCEEeeeccCCCCccccccccc
Q 048165           71 -------LEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTLDLRDCGITTIQGIQQFTS  123 (124)
Q Consensus        71 -------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~l~~  123 (124)
                             +..+..+++++.+++++|...+...+..+++|+.|++++|.+++++.+..+++
T Consensus       293 ~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~  352 (384)
T d2omza2         293 NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTN  352 (384)
T ss_dssp             CSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCC
Confidence                   12344567888888888862212347889999999999999988877666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=6.7e-15  Score=86.73  Aligned_cols=106  Identities=31%  Similarity=0.312  Sum_probs=79.3

Q ss_pred             CCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhh-hccCCCCCEEEccCccccccchhcccCCCCCC
Q 048165            3 NLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQG-LAKLKNLEALDLSSNYYLHGSLEGLANLTNLQ   81 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   81 (124)
                      .+++|++|++++|.  +. .++  .+..+++|+.|++++|.++..+. ...+++|+++++++|.+...  ..+..+++|+
T Consensus        46 ~L~~L~~L~Ls~n~--I~-~i~--~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          46 TLKACKHLALSTNN--IE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HTTTCCEEECSEEE--ES-CCC--CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             cccccceeECcccC--CC-Ccc--cccCCccccChhhccccccccccccccccccccccccccccccc--cccccccccc
Confidence            46788899999988  66 444  47788899999999998887543 33456788999999888742  4466778899


Q ss_pred             EEeccCCc--cCC-hhhhcCCCCCCEEeeeccCCCCc
Q 048165           82 VLDLSGNQ--NLT-TLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        82 ~l~l~~~~--~~~-~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                      .+++++|.  .+. ...+..+++|+.|++++|++...
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccC
Confidence            99998886  231 13577888999999999887543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=5.8e-14  Score=82.67  Aligned_cols=93  Identities=29%  Similarity=0.265  Sum_probs=76.0

Q ss_pred             cccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCccCChhhhcCCCCCCEE
Q 048165           26 LGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQNLTTLGLANLPNLKTL  105 (124)
Q Consensus        26 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~l  105 (124)
                      ..+..+++|+.|++++|.++.++.+..+++|+.|++++|.+. ..+.....+++|+.+++++|.......+..+++|+.|
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L  120 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEE
T ss_pred             hHHhcccccceeECcccCCCCcccccCCccccChhhcccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457789999999999999999878889999999999999988 3344344456899999999972224567888999999


Q ss_pred             eeeccCCCCccccc
Q 048165          106 DLRDCGITTIQGIQ  119 (124)
Q Consensus       106 ~l~~n~~~~~~~~~  119 (124)
                      ++++|.+++++.+.
T Consensus       121 ~L~~N~i~~~~~~~  134 (198)
T d1m9la_         121 YMSNNKITNWGEID  134 (198)
T ss_dssp             EESEEECCCHHHHH
T ss_pred             ccccchhccccccc
Confidence            99999998876543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.6e-11  Score=68.02  Aligned_cols=85  Identities=24%  Similarity=0.192  Sum_probs=68.5

Q ss_pred             CCCCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch--hhhccCCCCCEEEccCccccccchhcccCCCC
Q 048165            2 ANLRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI--QGLAKLKNLEALDLSSNYYLHGSLEGLANLTN   79 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   79 (124)
                      .+++++++|++.++.. +. .++...|.++++|+.|++++|+++.+  ..+..+++|+++++++|++. ..+.......+
T Consensus        28 ~~l~~l~~L~l~~n~~-l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~  104 (156)
T d2ifga3          28 PGAENLTELYIENQQH-LQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS  104 (156)
T ss_dssp             CSCSCCSEEECCSCSS-CC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC
T ss_pred             cCccccCeeecCCCcc-cc-ccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcccc
Confidence            4577899999976631 44 56657789999999999999999995  36889999999999999999 44544445557


Q ss_pred             CCEEeccCCc
Q 048165           80 LQVLDLSGNQ   89 (124)
Q Consensus        80 L~~l~l~~~~   89 (124)
                      ++++++++|.
T Consensus       105 l~~L~L~~Np  114 (156)
T d2ifga3         105 LQELVLSGNP  114 (156)
T ss_dssp             CCEEECCSSC
T ss_pred             ccccccCCCc
Confidence            9999999886

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.3e-10  Score=70.39  Aligned_cols=59  Identities=32%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             cCCCCCEEEccCcc-ccccchhcccCCCCCCEEeccCCccCCh---hhhcCCCCCCEEeeecc
Q 048165           52 KLKNLEALDLSSNY-YLHGSLEGLANLTNLQVLDLSGNQNLTT---LGLANLPNLKTLDLRDC  110 (124)
Q Consensus        52 ~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~L~~l~l~~n  110 (124)
                      .+++|++|++++|. +++..+..+..+++|++|++++|..++.   ..+..+++|+.|++.++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            35556666665542 4444444555556666666665542222   23344556666665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.3e-10  Score=71.51  Aligned_cols=35  Identities=34%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             CCCCCCEEeccCCccCC---hhhhcCCCCCCEEeeecc
Q 048165           76 NLTNLQVLDLSGNQNLT---TLGLANLPNLKTLDLRDC  110 (124)
Q Consensus        76 ~~~~L~~l~l~~~~~~~---~~~~~~~~~L~~l~l~~n  110 (124)
                      .+++|++|++++|..++   ...+..+++|++|+++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCC
Confidence            45666666666654221   234455666777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.8e-09  Score=63.14  Aligned_cols=85  Identities=24%  Similarity=0.355  Sum_probs=45.6

Q ss_pred             CccEEeccCCCCcchh--hhccCCCCCEEEccCccccccc-hhcccCCCCCCEEeccCCc---cCChhhhcCCCCCCEEe
Q 048165           33 NLKKLDLDGCGITTIQ--GLAKLKNLEALDLSSNYYLHGS-LEGLANLTNLQVLDLSGNQ---NLTTLGLANLPNLKTLD  106 (124)
Q Consensus        33 ~l~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~~~L~~l~  106 (124)
                      ++++|++++|+++..+  .+..+++|+++++++|.+.+.. +..+..++.++++.+..+.   .+.+..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4566666666665532  3555666666666666554322 2344555666666554332   23234455566666666


Q ss_pred             eeccCCCCccc
Q 048165          107 LRDCGITTIQG  117 (124)
Q Consensus       107 l~~n~~~~~~~  117 (124)
                      +++|.+...+.
T Consensus       110 l~~~~l~~~~~  120 (242)
T d1xwdc1         110 ISNTGIKHLPD  120 (242)
T ss_dssp             EESCCCCSCCC
T ss_pred             cchhhhccccc
Confidence            66666554443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=8.6e-11  Score=75.72  Aligned_cols=108  Identities=25%  Similarity=0.233  Sum_probs=79.1

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccchhcc----
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGSLEGL----   74 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~~~~~----   74 (124)
                      +.|+.|+++++.  +.+.--...++.+++++++++++|.++..      ..+..+++|++|++++|.+.+.....+    
T Consensus         2 ~~l~~ld~~~~~--i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEE--LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCC--CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCc--CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            367899999998  65332224567789999999999998761      246788999999999998874332222    


Q ss_pred             c-CCCCCCEEeccCCccCC------hhhhcCCCCCCEEeeeccCCCC
Q 048165           75 A-NLTNLQVLDLSGNQNLT------TLGLANLPNLKTLDLRDCGITT  114 (124)
Q Consensus        75 ~-~~~~L~~l~l~~~~~~~------~~~~~~~~~L~~l~l~~n~~~~  114 (124)
                      . ...+|++|++++|...+      ...+..+++|+.+++++|.+.+
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            2 23579999999996110      2346678999999999998764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.8e-09  Score=61.75  Aligned_cols=62  Identities=19%  Similarity=0.080  Sum_probs=39.4

Q ss_pred             CCCEEEccCccccccchhcccCCCCCCEEe-ccCCc--cCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           55 NLEALDLSSNYYLHGSLEGLANLTNLQVLD-LSGNQ--NLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        55 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~-l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      .++.+++.+|.+... +.......++..+. +.+|.  .+....+.++++|+.|++++|++++++.
T Consensus       154 ~l~~L~l~~n~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         154 ESVILWLNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             SCEEEECCSSCCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred             cceeeeccccccccc-ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH
Confidence            555666666666533 22223344554443 45554  5645567889999999999999987764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.86  E-value=1.7e-08  Score=62.88  Aligned_cols=100  Identities=24%  Similarity=0.206  Sum_probs=71.3

Q ss_pred             CcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEEe
Q 048165            5 RYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLD   84 (124)
Q Consensus         5 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   84 (124)
                      .++++|+++++.  ++ .+| +   ..+++++|++++|+++.++..  +.+|+.|++.+|.+. ..+. +  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~--L~-~lp-~---~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLG--LS-SLP-E---LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSC--CS-CCC-S---CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCS-CCCS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCC--CC-CCC-C---CCCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccc-hhhh-h--cccccccc
Confidence            357889999988  66 566 2   246789999999998886532  468899999988876 2222 1  24689999


Q ss_pred             ccCCccCChhhhcCCCCCCEEeeeccCCCCccc
Q 048165           85 LSGNQNLTTLGLANLPNLKTLDLRDCGITTIQG  117 (124)
Q Consensus        85 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  117 (124)
                      +++|.....+....++.|++++++++.+...+.
T Consensus       105 L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         105 VSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccccccchhhhccceeecccccccccccc
Confidence            998871112245678889999998888776553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.77  E-value=6.9e-09  Score=65.10  Aligned_cols=110  Identities=25%  Similarity=0.280  Sum_probs=73.0

Q ss_pred             CCcCcEEeccccccccCCc----ccccccccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccchhc
Q 048165            4 LRYLQVLDLSANYNITSGS----LTRLGLANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGSLEG   73 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~----~~~~~~~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~~~~   73 (124)
                      ++.++.+++++|.  +...    .-...+..+++++.|++++|.++..      ..+..+++|++|++++|.+.+.....
T Consensus       185 ~~~L~~L~L~~n~--i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         185 HRLLHTVKMVQNG--IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             CTTCCEEECCSSC--CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhccccccccc--ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            5678888888887  5421    1113456678888888888887651      34567788888888888887543333


Q ss_pred             cc------CCCCCCEEeccCCccCC-------hhhh-cCCCCCCEEeeeccCCCCcc
Q 048165           74 LA------NLTNLQVLDLSGNQNLT-------TLGL-ANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        74 ~~------~~~~L~~l~l~~~~~~~-------~~~~-~~~~~L~~l~l~~n~~~~~~  116 (124)
                      +.      ....++++++++|. ++       ...+ .+++.|+.+++++|.+....
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            32      23578888888886 21       1122 25678888898888886543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.57  E-value=6.7e-07  Score=55.48  Aligned_cols=102  Identities=26%  Similarity=0.273  Sum_probs=70.8

Q ss_pred             CCcCcEEeccccccccCCcccccccccccCccEEeccCCCCcchhhhccCCCCCEEEccCccccccchhcccCCCCCCEE
Q 048165            4 LRYLQVLDLSANYNITSGSLTRLGLANLTNLKKLDLDGCGITTIQGLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVL   83 (124)
Q Consensus         4 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   83 (124)
                      .++|++|++++|.  +. .+| .   ...+|+.|++++|.++..+.+  .+.|++|++++|.+. ..|. ++.+.+|+++
T Consensus        57 ~~~L~~L~Ls~N~--l~-~lp-~---~~~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          57 PPHLESLVASCNS--LT-ELP-E---LPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKII  125 (353)
T ss_dssp             CTTCSEEECCSSC--CS-SCC-C---CCTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEE
T ss_pred             CCCCCEEECCCCC--Cc-ccc-c---chhhhhhhhhhhcccchhhhh--ccccccccccccccc-cccc-hhhhccceee
Confidence            4689999999998  76 556 2   246789999999988875433  246999999999887 4443 5678899999


Q ss_pred             eccCCc--cC------------------ChhhhcCCCCCCEEeeeccCCCCcc
Q 048165           84 DLSGNQ--NL------------------TTLGLANLPNLKTLDLRDCGITTIQ  116 (124)
Q Consensus        84 ~l~~~~--~~------------------~~~~~~~~~~L~~l~l~~n~~~~~~  116 (124)
                      ++.++.  ..                  ....+..++.++.+++..|.....+
T Consensus       126 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         126 DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             ccccccccccccccccccchhhccccccccccccccccceecccccccccccc
Confidence            988775  11                  0112334456667777777665544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.48  E-value=1.5e-07  Score=53.41  Aligned_cols=108  Identities=12%  Similarity=0.151  Sum_probs=75.3

Q ss_pred             CCCcCcEEeccccccccCCc-cc--ccccccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccchh-
Q 048165            3 NLRYLQVLDLSANYNITSGS-LT--RLGLANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGSLE-   72 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~-~~--~~~~~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~~~-   72 (124)
                      +.+.|++|+++++.. +... +.  ...+...++++.|++++|.+...      ..+...+.|+.+++++|.+.+.... 
T Consensus        13 n~~~L~~L~L~~~~~-i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKR-VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCC-CCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            568899999987431 3211 11  12455678899999999998761      2455678999999999998854433 


Q ss_pred             ---cccCCCCCCEEeccCCc--cCC-------hhhhcCCCCCCEEeeeccC
Q 048165           73 ---GLANLTNLQVLDLSGNQ--NLT-------TLGLANLPNLKTLDLRDCG  111 (124)
Q Consensus        73 ---~~~~~~~L~~l~l~~~~--~~~-------~~~~~~~~~L~~l~l~~n~  111 (124)
                         ++...+.|++|++.+++  .++       ...+...+.|+.++++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence               45577899999998875  222       2344567889999886653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1e-08  Score=58.07  Aligned_cols=60  Identities=27%  Similarity=0.251  Sum_probs=34.7

Q ss_pred             cccCccEEeccCCCCcchh----hhccCCCCCEEEccCccccccchhcccCCCCCCEEeccCCc
Q 048165           30 NLTNLKKLDLDGCGITTIQ----GLAKLKNLEALDLSSNYYLHGSLEGLANLTNLQVLDLSGNQ   89 (124)
Q Consensus        30 ~~~~l~~L~l~~~~l~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~   89 (124)
                      .+++|++|++++|+++...    .+..+++|+.+++++|.+.....-.......++.+++.+|.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            4666777777777666532    23456677777777776663322222233456666666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4.7e-08  Score=55.22  Aligned_cols=80  Identities=28%  Similarity=0.182  Sum_probs=57.3

Q ss_pred             CCCcCcEEeccccccccCCccc-ccccccccCccEEeccCCCCcchhhh--ccCCCCCEEEccCccccccchh-------
Q 048165            3 NLRYLQVLDLSANYNITSGSLT-RLGLANLTNLKKLDLDGCGITTIQGL--AKLKNLEALDLSSNYYLHGSLE-------   72 (124)
Q Consensus         3 ~~~~l~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~--~~~~~L~~l~l~~~~~~~~~~~-------   72 (124)
                      .+++|++|++++|.  +...-+ ...+..+++|+.|++++|.++..+.+  .....|+.+++.+|.+......       
T Consensus        63 ~~~~L~~L~Ls~N~--i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          63 NIPELLSLNLSNNR--LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HCTTCCCCCCCSSC--CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             hCCCCCEeeCCCcc--ccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            47899999999998  663211 13456799999999999999986432  2345799999999988743221       


Q ss_pred             cccCCCCCCEEe
Q 048165           73 GLANLTNLQVLD   84 (124)
Q Consensus        73 ~~~~~~~L~~l~   84 (124)
                      .+..+|+|+.|+
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            133567777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2e-07  Score=59.68  Aligned_cols=81  Identities=26%  Similarity=0.312  Sum_probs=38.4

Q ss_pred             cCccEEeccCCCCcch--h----hhccCCCCCEEEccCccccccchh----ccc-CCCCCCEEeccCCccCC-------h
Q 048165           32 TNLKKLDLDGCGITTI--Q----GLAKLKNLEALDLSSNYYLHGSLE----GLA-NLTNLQVLDLSGNQNLT-------T   93 (124)
Q Consensus        32 ~~l~~L~l~~~~l~~~--~----~~~~~~~L~~l~l~~~~~~~~~~~----~~~-~~~~L~~l~l~~~~~~~-------~   93 (124)
                      ..++.++++++.+...  .    .+...++|++|++++|.+.+....    .+. ..+.|++|++++|. ++       .
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~  390 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA  390 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHH
Confidence            3455555555554431  1    122344566666666655432221    222 23456666666654 11       1


Q ss_pred             hhhcCCCCCCEEeeeccCCC
Q 048165           94 LGLANLPNLKTLDLRDCGIT  113 (124)
Q Consensus        94 ~~~~~~~~L~~l~l~~n~~~  113 (124)
                      ..+..+++|++|++++|.++
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCC
T ss_pred             HHHhcCCCCCEEECCCCcCC
Confidence            22344556666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.38  E-value=2.9e-07  Score=57.54  Aligned_cols=13  Identities=31%  Similarity=0.386  Sum_probs=6.1

Q ss_pred             CCCCCCEEeccCC
Q 048165           76 NLTNLQVLDLSGN   88 (124)
Q Consensus        76 ~~~~L~~l~l~~~   88 (124)
                      .+++|++|++++|
T Consensus       241 ~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         241 SWPNLRELGLNDC  253 (344)
T ss_dssp             GCTTCCEEECTTC
T ss_pred             ccccchhhhhhcC
Confidence            3444444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.18  E-value=2.5e-06  Score=48.12  Aligned_cols=86  Identities=16%  Similarity=0.277  Sum_probs=63.3

Q ss_pred             ccccCccEEeccCC-CCcc--h----hhhccCCCCCEEEccCccccccchhc----ccCCCCCCEEeccCCccCC-----
Q 048165           29 ANLTNLKKLDLDGC-GITT--I----QGLAKLKNLEALDLSSNYYLHGSLEG----LANLTNLQVLDLSGNQNLT-----   92 (124)
Q Consensus        29 ~~~~~l~~L~l~~~-~l~~--~----~~~~~~~~L~~l~l~~~~~~~~~~~~----~~~~~~L~~l~l~~~~~~~-----   92 (124)
                      ...++++.|+++++ .++.  .    ..+...+.|++|++++|.+.+.....    +...+.|+++++++|. ++     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHH
Confidence            45688999999975 4655  1    24666788999999999987543333    3457899999999996 21     


Q ss_pred             --hhhhcCCCCCCEEeeeccCCCCc
Q 048165           93 --TLGLANLPNLKTLDLRDCGITTI  115 (124)
Q Consensus        93 --~~~~~~~~~L~~l~l~~n~~~~~  115 (124)
                        ...+...+.|++|++++|.+..+
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCc
Confidence              22456778899999998876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.12  E-value=2.3e-06  Score=48.14  Aligned_cols=109  Identities=20%  Similarity=0.167  Sum_probs=73.9

Q ss_pred             CCCCcCcEEeccccccccCCcc-c--ccccccccCccEEeccCCCCcch------hhhccCCCCCEEEccCccccccch-
Q 048165            2 ANLRYLQVLDLSANYNITSGSL-T--RLGLANLTNLKKLDLDGCGITTI------QGLAKLKNLEALDLSSNYYLHGSL-   71 (124)
Q Consensus         2 ~~~~~l~~l~l~~~~~~~~~~~-~--~~~~~~~~~l~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~~~-   71 (124)
                      .+.+.|++|+++++.. ++... .  ...+...++++.|++++|.++..      ..+...+.++.+++.++.+.+... 
T Consensus        14 ~~~~~L~~L~L~~~~~-i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCC-CCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            3568899999987421 32111 1  12345778899999999988772      245567899999999998875433 


Q ss_pred             ---hcccCCCCCCEEeccCCc-cCC-------hhhhcCCCCCCEEeeeccC
Q 048165           72 ---EGLANLTNLQVLDLSGNQ-NLT-------TLGLANLPNLKTLDLRDCG  111 (124)
Q Consensus        72 ---~~~~~~~~L~~l~l~~~~-~~~-------~~~~~~~~~L~~l~l~~n~  111 (124)
                         ..+...+.++.+++..+. .+.       ...+...+.|+.|++..+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence               345577889887775443 221       2345578899999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.46  E-value=0.00014  Score=40.62  Aligned_cols=86  Identities=15%  Similarity=0.170  Sum_probs=60.6

Q ss_pred             cccccCccEEeccC-CCCcc--h----hhhccCCCCCEEEccCccccccchhc----ccCCCCCCEEeccCCcc------
Q 048165           28 LANLTNLKKLDLDG-CGITT--I----QGLAKLKNLEALDLSSNYYLHGSLEG----LANLTNLQVLDLSGNQN------   90 (124)
Q Consensus        28 ~~~~~~l~~L~l~~-~~l~~--~----~~~~~~~~L~~l~l~~~~~~~~~~~~----~~~~~~L~~l~l~~~~~------   90 (124)
                      ....+.|+.|++++ +.++.  .    ..+...++|++|++++|.+.+.....    +....+++.+++.++..      
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34678999999998 45655  1    34567889999999999887543333    34678999999998861      


Q ss_pred             -CChhhhcCCCCCCEEee--eccCCCC
Q 048165           91 -LTTLGLANLPNLKTLDL--RDCGITT  114 (124)
Q Consensus        91 -~~~~~~~~~~~L~~l~l--~~n~~~~  114 (124)
                       + ...+...++++.+++  ..|.+.+
T Consensus        93 ~l-~~~l~~~~~L~~l~L~l~~n~i~~  118 (166)
T d1io0a_          93 AL-VEALQSNTSLIELRIDNQSQPLGN  118 (166)
T ss_dssp             HH-HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HH-HHHHHhCccccEEeeccCCCcCcH
Confidence             2 234567788887665  4556543