Citrus Sinensis ID: 048171

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
DYLTLCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK
Secondary Structure (PSIPRED)
ccccEEEEEEcccEEEEEEccccEEEEcHHHHHccccccEEEEccccccEEEcccccEEEEEEEEcccEEEEEEEccccccccccHHHHHHHHHcHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHcccccEEEEEEccccEEEEcHEEEEEEccccEEccccccccEEEEcccEEEEEEEEEcccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
DYLTLCLLLYRLFQVEIEFangskftlsaeylrihspaadgkirsvggekvifgrrhvgimsaepvgnygvrivfddlhktgiySWDYFYYLGSNKFTLMRNYIKTLKkhglsrdphkkk
Flexible Loop (DISEMBL)
DYLTLCLLLYRLFQVEIEFANGSKFTLSAEYLRIhspaadgkirsvgGEKVIFGRRHVGimsaepvgnyGVRIVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTlkkhglsrdphkkk
Low Complexity Region (SEG)
DYltlclllyrlFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK
Disordered region (IsUnstruct)
*YLTLCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLK************
Disordered Region (DISOPRED)
DYLTLCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGK*********IFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIK***************
Disordered Region (DISEMBL)
DYLTLCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLK************
Disordered Region (DISPRO)
DYLTLCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKH**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DYLTLCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
296081315	405	unnamed protein product [Vitis vinifera]	0.883	0.261	0.849	2e-51
224055661	136	predicted protein [Populus trichocarpa]	0.891	0.786	0.841	3e-49
359488654	131	PREDICTED: uncharacterized protein LOC10	0.908	0.832	0.825	8e-49
449492883	111	PREDICTED: uncharacterized LOC101219823	0.9	0.972	0.824	6e-48
357459735	134	hypothetical protein MTR_3g052740 [Medic	0.883	0.791	0.858	1e-47
449455888	136	PREDICTED: uncharacterized protein LOC10	0.883	0.779	0.820	1e-46
414879155	138	TPA: hypothetical protein ZEAMMB73_85172	0.883	0.768	0.811	3e-46
226501266	138	uncharacterized protein LOC100278318 [Ze	0.883	0.768	0.801	1e-45
242055311	138	hypothetical protein SORBIDRAFT_03g04305	0.891	0.775	0.794	2e-45
388522725	134	unknown [Lotus japonicus]	0.883	0.791	0.820	4e-45

>gi|296081315|emb|CBI17697.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/106 (84%), Positives = 101/106 (95%)

Query: 15  VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIV 74
           VE++F NGS F LSAE+LRIHSPAAD K+RS+GGEKVIFGRRHVGIMSAEPVGNYGVRI+
Sbjct: 300 VEVKFDNGSAFNLSAEFLRIHSPAADSKVRSIGGEKVIFGRRHVGIMSAEPVGNYGVRIL 359

Query: 75  FDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           FDDLHKTGIY+WDYFY+LGSNKFTLMRNYIKTLKKHGL+RDP ++K
Sbjct: 360 FDDLHKTGIYTWDYFYHLGSNKFTLMRNYIKTLKKHGLNRDPPRRK 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055661|ref|XP_002298590.1| predicted protein [Populus trichocarpa] gi|222845848|gb|EEE83395.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 101/107 (94%)

Query: 14  QVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
            VE+E+ANGSKF LSAE+LRI SPA DGK+RSVGGEKVI GRRHVGIMSAEPVGNYGVR+
Sbjct: 30  NVEVEYANGSKFNLSAEFLRIQSPAVDGKVRSVGGEKVIVGRRHVGIMSAEPVGNYGVRM 89

Query: 74  VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           +FDDLHKTGIY+WD+FY+LGSNKFTLMRNYIKTLKKHGLSRDP ++K
Sbjct: 90  IFDDLHKTGIYTWDFFYHLGSNKFTLMRNYIKTLKKHGLSRDPPRRK 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488654|ref|XP_003633797.1| PREDICTED: uncharacterized protein LOC100853099 [Vitis vinifera]

 Score =  197 bits (500), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 102/109 (93%)

Query: 12  LFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGV 71
           +  VE++F NGS F LSAE+LRIHSPAAD K+RS+GGEKVIFGRRHVGIMSAEPVGNYGV
Sbjct: 23  VLTVEVKFDNGSAFNLSAEFLRIHSPAADSKVRSIGGEKVIFGRRHVGIMSAEPVGNYGV 82

Query: 72  RIVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           RI+FDDLHKTGIY+WDYFY+LGSNKFTLMRNYIKTLKKHGL+RDP ++K
Sbjct: 83  RILFDDLHKTGIYTWDYFYHLGSNKFTLMRNYIKTLKKHGLNRDPPRRK 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492883|ref|XP_004159130.1| PREDICTED: uncharacterized LOC101219823 [Cucumis sativus]

 Score =  194 bits (492), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 89/108 (82%), Positives = 103/108 (95%)

Query: 13  FQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVR 72
           FQVE++FA+GS F LSAE+LR++SPAAD KIRS+GGEKVI GRRHVGIMSAEPVGNYGVR
Sbjct: 4   FQVEVKFADGSVFNLSAEFLRVYSPAADAKIRSIGGEKVISGRRHVGIMSAEPVGNYGVR 63

Query: 73  IVFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           I+FDDLH+TGIYSWDYF++LGSNKFTL+RNY+KTLKKHGLSRDP K+K
Sbjct: 64  ILFDDLHRTGIYSWDYFFHLGSNKFTLLRNYVKTLKKHGLSRDPPKRK 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459735|ref|XP_003600148.1| hypothetical protein MTR_3g052740 [Medicago truncatula] gi|355489196|gb|AES70399.1| hypothetical protein MTR_3g052740 [Medicago truncatula]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/106 (85%), Positives = 98/106 (92%)

Query: 15  VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIV 74
           VE+EFANGS F LSAE+LRI+SPA DGKIRS+GGEKVI GRRHVGIMSAEPVGNYGVR+ 
Sbjct: 29  VEVEFANGSVFKLSAEFLRINSPAVDGKIRSIGGEKVISGRRHVGIMSAEPVGNYGVRLN 88

Query: 75  FDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           FDDLHKTGIYSWDYFY+LGS KFTLMRNYIKTLKKHGLSRDP  +K
Sbjct: 89  FDDLHKTGIYSWDYFYHLGSKKFTLMRNYIKTLKKHGLSRDPRGRK 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455888|ref|XP_004145682.1| PREDICTED: uncharacterized protein LOC101219823 [Cucumis sativus]

 Score =  190 bits (482), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 101/106 (95%)

Query: 15  VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIV 74
           VE++FA+GS F LSAE+LR++SPAAD KIRS+GGEKVI GRRHVGIMSAEPVGNYGVRI+
Sbjct: 31  VEVKFADGSVFNLSAEFLRVYSPAADAKIRSIGGEKVISGRRHVGIMSAEPVGNYGVRIL 90

Query: 75  FDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           FDDLH+TGIYSWDYF++LGSNKFTL+RNY+KTLKKHGLSRDP K+K
Sbjct: 91  FDDLHRTGIYSWDYFFHLGSNKFTLLRNYVKTLKKHGLSRDPPKRK 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414879155|tpg|DAA56286.1| TPA: hypothetical protein ZEAMMB73_851729 [Zea mays]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/106 (81%), Positives = 100/106 (94%)

Query: 15  VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIV 74
           VEIEFA+GS F LSAE+LR++SPAAD KIRSVGGEKVIFGRRHVGIMSAE VGNYGVRI+
Sbjct: 33  VEIEFADGSSFHLSAEFLRVYSPAADSKIRSVGGEKVIFGRRHVGIMSAESVGNYGVRIL 92

Query: 75  FDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           FDDLHKTGI++WDY ++LGSNKF+LMRNYI+TL+KHGLSRDP ++K
Sbjct: 93  FDDLHKTGIFTWDYLHHLGSNKFSLMRNYIRTLRKHGLSRDPQRRK 138

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501266|ref|NP_001145103.1| uncharacterized protein LOC100278318 [Zea mays] gi|195651255|gb|ACG45095.1| hypothetical protein [Zea mays]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/106 (80%), Positives = 99/106 (93%)

Query: 15  VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIV 74
           VEIEFA+GS F LSAE+LR++SPA D KIRSVGGEKVIFGRRHVGIMSAE VGNYGVRI+
Sbjct: 33  VEIEFADGSSFHLSAEFLRVYSPAVDSKIRSVGGEKVIFGRRHVGIMSAESVGNYGVRIL 92

Query: 75  FDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           FDDLHKTGI++WDY ++LGSNKF+LMRNYI+TL+KHGLSRDP ++K
Sbjct: 93  FDDLHKTGIFTWDYLHHLGSNKFSLMRNYIRTLRKHGLSRDPQRRK 138

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055311|ref|XP_002456801.1| hypothetical protein SORBIDRAFT_03g043050 [Sorghum bicolor] gi|241928776|gb|EES01921.1| hypothetical protein SORBIDRAFT_03g043050 [Sorghum bicolor]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/107 (79%), Positives = 99/107 (92%)

Query: 14  QVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
            VEIEFA+GS F LSAE+LR++SPAAD KIRSVGGEKVIFGR+HVGIMSAE VGNYGVRI
Sbjct: 32  SVEIEFADGSSFHLSAEFLRVYSPAADSKIRSVGGEKVIFGRQHVGIMSAESVGNYGVRI 91

Query: 74  VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           +FDDLHKTGI++WDY ++LGSNKF LMRNYI+TL+KHGLSRDP ++K
Sbjct: 92  LFDDLHKTGIFTWDYLHHLGSNKFGLMRNYIRTLRKHGLSRDPQRRK 138

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522725|gb|AFK49424.1| unknown [Lotus japonicus]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 97/106 (91%)

Query: 15  VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIV 74
           VE+EFA+G  F LSAE+LRI+SPA DGKIRS+GGEKVI GRR VGIMSAEPVGNYGVR+ 
Sbjct: 29  VEVEFADGRAFKLSAEFLRINSPAVDGKIRSIGGEKVISGRRLVGIMSAEPVGNYGVRLN 88

Query: 75  FDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKKK 120
           FDDLHKTGIYSWDYFY+LGSN+FTLMRNYIKTLKK+GLSRDP  +K
Sbjct: 89  FDDLHKTGIYSWDYFYHLGSNRFTLMRNYIKTLKKYGLSRDPRGRK 134

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:2086676	141	AT3G27340 "AT3G27340" [Arabido	0.858	0.730	0.805	1.3e-43
UNIPROTKB|Q87UZ9	128	PSPTO_5142 "Uncharacterized pr	0.841	0.789	0.378	2.2e-18
UNIPROTKB|Q8E9U8	128	SO_4164 "Uncharacterized prote	0.833	0.781	0.401	5.8e-18
TIGR_CMR|SO_4164	128	SO_4164 "conserved hypothetica	0.833	0.781	0.401	5.8e-18
UNIPROTKB|Q4KJK4	125	PFL_0435 "Uncharacterized prot	0.766	0.736	0.393	9.8e-16
UNIPROTKB|Q606K0	121	MCA2016 "Putative uncharacteri	0.75	0.743	0.411	2e-15
UNIPROTKB|Q47W02	125	CPS_4371 "Conserved domain pro	0.816	0.784	0.352	2.9e-09
TIGR_CMR|CPS_4371	125	CPS_4371 "conserved domain pro	0.816	0.784	0.352	2.9e-09
UNIPROTKB|Q0BWC8	101	HNE_3544 "Putative uncharacter	0.625	0.742	0.287	6.3e-05

TAIR|locus:2086676 AT3G27340 "AT3G27340" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 83/103 (80%), Positives = 96/103 (93%)

Query:    14 QVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
             QVE+E+A+G+KF  S+E+LRIHSPAADGK+RS+GGEKVI GRR+VGIMSAEPVGNYGVR+
Sbjct:    33 QVEVEYADGTKFNFSSEFLRIHSPAADGKVRSIGGEKVISGRRYVGIMSAEPVGNYGVRL 92

Query:    74 VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDP 116
             VFDDLH+TGIY WDYFY LGSNKF LMRNYIKTL+KH LSR+P
Sbjct:    93 VFDDLHRTGIYPWDYFYELGSNKFGLMRNYIKTLQKHNLSREP 135

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q87UZ9 PSPTO_5142 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 39/103 (37%), Positives = 67/103 (65%)

Query:    17 IEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFD 76
             +++A   ++ L AE+LR+HSP+A+  ++  G   + FG+  VG+   EP G Y +++ FD
Sbjct:    22 LKYAANEEYHLPAEFLRVHSPSAE--VQGHGRPILQFGKLGVGLSKVEPAGQYALKLTFD 79

Query:    77 DLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKK 119
             D H +G+++WDY Y L + +  L  +Y++ LKK G SRDP ++
Sbjct:    80 DGHDSGLFTWDYLYQLATRQAALWEDYLQELKKAGKSRDPSEQ 122

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8E9U8 SO_4164 "Uncharacterized protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 41/102 (40%), Positives = 64/102 (62%)

Query:    15 VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIV 74
             +EI F NG ++ L+ E LR++SP+A+  +   G  K++  +++V I   EPVGNY V+IV
Sbjct:    20 LEISFDNGEQYQLTCEMLRVYSPSAE--VHGHGNPKLVTHKKNVNITRIEPVGNYAVKIV 77

Query:    75 FDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDP 116
             FDD H TG++SW   Y L +++  L   Y+  L+    SR+P
Sbjct:    78 FDDGHDTGLFSWQVLYDLATHQVELWEKYLARLRAEKASREP 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4164 SO_4164 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 41/102 (40%), Positives = 64/102 (62%)

Query:    15 VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIV 74
             +EI F NG ++ L+ E LR++SP+A+  +   G  K++  +++V I   EPVGNY V+IV
Sbjct:    20 LEISFDNGEQYQLTCEMLRVYSPSAE--VHGHGNPKLVTHKKNVNITRIEPVGNYAVKIV 77

Query:    75 FDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDP 116
             FDD H TG++SW   Y L +++  L   Y+  L+    SR+P
Sbjct:    78 FDDGHDTGLFSWQVLYDLATHQVELWEKYLARLRAEKASREP 119

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q4KJK4 PFL_0435 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 37/94 (39%), Positives = 58/94 (61%)

Query:    25 FTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIY 84
             + L AE LR+HSP+A+  ++  G   + FG+  VG+   EP G Y +++ FDD H +G++
Sbjct:    27 YHLPAELLRVHSPSAE--VQGHGKPILQFGKLGVGLTKVEPAGQYALKLTFDDGHDSGLF 84

Query:    85 SWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHK 118
             +WDY Y L   +  L  +Y+  LK  G SRDP++
Sbjct:    85 TWDYLYQLALRQDELWNDYLAELKAAGKSRDPNE 118

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q606K0 MCA2016 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/90 (41%), Positives = 56/90 (62%)

Query:    15 VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIV 74
             +EI F +GS+F L  EYLR++SP+A+ +    G E +   +  V I + +PVG+YG++  
Sbjct:    20 LEISFDDGSRFELPCEYLRVYSPSAEVRGHGPGQETLPLNKEDVTITAVDPVGHYGIKPT 79

Query:    75 FDDLHKTGIYSWDYFYYLGSNKFTLMRNYI 104
             F D H TGIY+W   Y LG +  TL + Y+
Sbjct:    80 FSDGHDTGIYTWKLLYDLGRHYNTLWQEYL 109

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47W02 CPS_4371 "Conserved domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 36/102 (35%), Positives = 53/102 (51%)

Query:    17 IEFANGSKFT---LSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
             +EF+     T   LS EYLRI S A   K    G  +V   +++V ++S E V  +G R+
Sbjct:    17 VEFSANENITSTQLSFEYLRISSDANSAKKNKAGQIQVTSHKKNVLLISIESVAKHGYRL 76

Query:    74 VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRD 115
             +FDD H + I+S +Y   L     T  + Y+  LK  G SR+
Sbjct:    77 IFDDEH-SAIFSEEYLQTLTLEYETRWQTYLSALKDSGHSRE 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4371 CPS_4371 "conserved domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 36/102 (35%), Positives = 53/102 (51%)

Query:    17 IEFANGSKFT---LSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
             +EF+     T   LS EYLRI S A   K    G  +V   +++V ++S E V  +G R+
Sbjct:    17 VEFSANENITSTQLSFEYLRISSDANSAKKNKAGQIQVTSHKKNVLLISIESVAKHGYRL 76

Query:    74 VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRD 115
             +FDD H + I+S +Y   L     T  + Y+  LK  G SR+
Sbjct:    77 IFDDEH-SAIFSEEYLQTLTLEYETRWQTYLSALKDSGHSRE 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BWC8 HNE_3544 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 23/80 (28%), Positives = 40/80 (50%)

Query:    19 FANGSKFTLSAEYLRIHSPAADGKIRSVGGEK---VIFGRRHVGIMSAEPVGNYGVRIVF 75
             F +G    +    LR+ SP+A+ +    G +    V+     + +  AEP+G Y +R+ F
Sbjct:    23 FDDGQSGRVDYRTLRLESPSAEVQGHGSGPKPPPPVV--PEDIRVTKAEPIGRYALRLHF 80

Query:    76 DDLHKTGIYSWDYFYYLGSN 95
              D H +G+Y+W+    L  N
Sbjct:    81 SDGHSSGLYTWNILRALTIN 100


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.141   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      120       110   0.00091  102 3  11 22  0.44    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  117 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.39u 0.14s 11.53t   Elapsed:  00:00:00
  Total cpu time:  11.39u 0.14s 11.53t   Elapsed:  00:00:00
  Start:  Fri May 10 13:42:40 2013   End:  Fri May 10 13:42:40 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	120
COG3536	120	COG3536, COG3536, Uncharacterized protein conserve	3e-35
pfam06155	87	pfam06155, DUF971, Protein of unknown function (DU	4e-35

>gnl|CDD|226066 COG3536, COG3536, Uncharacterized protein conserved in bacteria [Function unknown]

 Score =  117 bits (294), Expect = 3e-35
 Identities = 47/101 (46%), Positives = 65/101 (64%)

Query: 16  EIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVF 75
            + FA+G+ F L AE+LR+ SP+A+ +    G   ++ G+R+V I   EPVGNY VRI+F
Sbjct: 18  SLTFADGAPFRLPAEFLRVLSPSAEVQGHGPGQRVLVPGKRNVQIRDIEPVGNYAVRILF 77

Query: 76  DDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDP 116
           DD H +GIY+W Y + LG  K  L + Y+  L   GLSRDP
Sbjct: 78  DDGHDSGIYTWAYLHELGEEKDALWQAYLDELAAAGLSRDP 118

Length = 120

>gnl|CDD|218914 pfam06155, DUF971, Protein of unknown function (DUF971)

 Score =  115 bits (291), Expect = 4e-35
 Identities = 39/77 (50%), Positives = 48/77 (62%)

Query: 14 QVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
           +EIE+ +G    L AEYLR+  P A+ +    G E +  G+R V I S EPVGNY VRI
Sbjct: 11 VLEIEWDDGESSELPAEYLRVACPCAECRGHGPGQEVLQTGKRDVRITSIEPVGNYAVRI 70

Query: 74 VFDDLHKTGIYSWDYFY 90
          VF D H +GIYSWDY  
Sbjct: 71 VFSDGHDSGIYSWDYLR 87

This family consists of several short bacterial proteins and one sequence from Oryza sativa. The function of this family is unknown. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
COG3536	120	Uncharacterized protein conserved in bacteria [Fun	100.0
PF06155	89	DUF971: Protein of unknown function (DUF971); Inte	100.0
TIGR02409	366	carnitine_bodg gamma-butyrobetaine hydroxylase. Me	99.85
KOG3888	407	consensus Gamma-butyrobetaine,2-oxoglutarate dioxy	99.77
TIGR02410	362	carnitine_TMLD trimethyllysine dioxygenase. Member	99.7
KOG3889	371	consensus Predicted gamma-butyrobetaine,2-oxogluta	99.38
PF06155	89	DUF971: Protein of unknown function (DUF971); Inte	97.35
KOG3888	407	consensus Gamma-butyrobetaine,2-oxoglutarate dioxy	96.51
TIGR02410	362	carnitine_TMLD trimethyllysine dioxygenase. Member	95.52
TIGR02409	366	carnitine_bodg gamma-butyrobetaine hydroxylase. Me	94.49
PF10387	79	DUF2442: Protein of unknown function (DUF2442); In	88.98

>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=6e-36  Score=207.19  Aligned_cols=109  Identities=43%  Similarity=0.748  Sum_probs=105.8

Q ss_pred             cCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeeeecccceeeeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171           10 YRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYF   89 (120)
Q Consensus        10 ~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wL   89 (120)
                      .+.+.|.|+|+||..+++|+..||-.||||+|..+..+|+.+.....+|+|..|+++|||||+|.|+|||.+|||+|.||
T Consensus        12 k~r~~L~l~f~dg~~~~L~ae~LRv~sPsAEvqghgp~q~v~v~gkr~V~i~~i~p~GnYavri~FdDgHDsGiy~W~YL   91 (120)
T COG3536          12 KDRKVLSLTFADGAPFRLPAEFLRVLSPSAEVQGHGPGQRVLVPGKRNVQIRDIEPVGNYAVRILFDDGHDSGIYTWAYL   91 (120)
T ss_pred             ccCcEEEEEeCCCCcccCCHHHHHhcCchHHhcccCCCCceeeeccccceEEEeEecCceEEEEEecCCcccCcccHHHH
Confidence            56688999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             HhhccCchHHHHHHHHHHHHcCCCCCCCC
Q 048171           90 YYLGSNKFTLMRNYIKTLKKHGLSRDPHK  118 (120)
Q Consensus        90 r~~~~~~~~~W~~y~~~~~~~~~~~~~~~  118 (120)
                      ++++..++.+|++||++|+++|+|||+||
T Consensus        92 ~~lg~~~d~lw~~Yl~eLA~~G~sRd~~~  120 (120)
T COG3536          92 HELGEEKDALWQAYLDELAAAGLSRDPPE  120 (120)
T ss_pred             HHHhhhhhHHHHHHHHHHHHcccccCCCC
Confidence            99999999999999999999999999986

>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins

Probab=100.00  E-value=2.8e-33  Score=187.67  Aligned_cols=82  Identities=32%  Similarity=0.542  Sum_probs=69.8

Q ss_pred             ecCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeee--eecccceeeeEEEEecCeeEEEEeCCCCceecCCH
Q 048171            9 LYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKV--IFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSW   86 (120)
Q Consensus         9 ~~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l--~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~   86 (120)
                      ..+++.|+|+|+||.++.||+.|||+|||||.|+++.++|+++  ..++.+|+|.+|+++|+|+|+|.|+|||.+|||+|
T Consensus         6 ~~~~~~l~i~w~DG~~~~~~~~~LRd~C~Ca~C~~~~~~~~~~~~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~sgiY~~   85 (89)
T PF06155_consen    6 DKDERHLEIEWSDGQESRFPYEWLRDNCPCAECRGEETGQRRLDTADIPPDVRPKSIEPVGNYALRITWSDGHDSGIYPW   85 (89)
T ss_dssp             ECCTTEEEEEETTSEEEEEEHHHHHHT-SSSSTCSTTTTEE-----GCGTTTTEEEEEEETTTEEEEEETTSB---EEEH
T ss_pred             ecCCCEEEEEECCCCEEEECHHHHhccCCChhhccccccCccccccccCCCceEeEEEECCCCEEEEEECCCCceeEecH
Confidence            4567999999999999999999999999999999777777743  35799999999999999999999999999899999


Q ss_pred             HHHH
Q 048171           87 DYFY   90 (120)
Q Consensus        87 ~wLr   90 (120)
                      +|||
T Consensus        86 ~~Lr   89 (89)
T PF06155_consen   86 EWLR   89 (89)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9996

; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.

>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase

Probab=99.85  E-value=1.1e-21  Score=159.33  Aligned_cols=78  Identities=19%  Similarity=0.191  Sum_probs=68.5

Q ss_pred             EEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEecC-eeEEEEeCCCCceecCCHHHHHh
Q 048171           15 VEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPVGN-YGVRIVFDDLHKTGIYSWDYFYY   91 (120)
Q Consensus        15 L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~g~-yal~I~WsDGH~sgiy~~~wLr~   91 (120)
                      |.|.|+||.+++||++||||||||+.|+++.++|+.+.  .+|.+|+|.+++++++ +.+.|.|+|||. |+|+++||++
T Consensus         2 l~v~w~dg~~~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~~~~~~~i~w~DgH~-s~y~~~wL~~   80 (366)
T TIGR02409         2 VNVKWQDGKTSRFPAIWLRDNCPCPDCYTISNGARKLLVLDIPVEINIRKLWIDDDGNLVVIFWPDGHL-SEFPAEWLKK   80 (366)
T ss_pred             eEEEeCCCCEeeecCeEeecCCCCCCccCcccCCccCchhhcCCcccceEEEEcCCCcEEEEEecCCCc-eEcCHHHHhh
Confidence            78999999999999999999999999997666776543  4689999999999863 468999999997 5999999998


Q ss_pred             hc
Q 048171           92 LG   93 (120)
Q Consensus        92 ~~   93 (120)
                      ++
T Consensus        81 ~~   82 (366)
T TIGR02409        81 RC   82 (366)
T ss_pred             cc
Confidence            75

Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.

>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]

Probab=99.77  E-value=6e-20  Score=149.21  Aligned_cols=96  Identities=14%  Similarity=0.105  Sum_probs=80.9

Q ss_pred             eeeeecCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEe-cCeeEEEEeCCCCce
Q 048171            5 LCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPV-GNYGVRIVFDDLHKT   81 (120)
Q Consensus         5 ~~~~~~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~-g~yal~I~WsDGH~s   81 (120)
                      .+.+...++.++|.|.||....||.+||||||||+.|+++.++.+++.  ..+.+|.|.++.++ .+..|.|.|+|||. 
T Consensus        18 ~a~~~n~~~iv~v~~~d~~~~~fp~iwlrDncpc~~Cf~~s~kark~~~~~~d~~i~~~~l~~ded~k~l~I~W~Dgh~-   96 (407)
T KOG3888|consen   18 SAAAANRSHIVQVPWFDRKSLTFPFIWLRDNCPCSDCFSPSAKARKLLWDHFDVNIRPQDLQIDEDRKSLVIKWSDGHH-   96 (407)
T ss_pred             hhhhcCCcceEeecccCCCcccccceeeecCCcchhhcCHHHHHHHhhhhhcccccccceeeEcccCcEEEEEecCCCc-
Confidence            344556778899999999999999999999999999998888888754  35778889998887 33489999999996 


Q ss_pred             ecCCHHHHHhhc--------------cCchHHHH
Q 048171           82 GIYSWDYFYYLG--------------SNKFTLMR  101 (120)
Q Consensus        82 giy~~~wLr~~~--------------~~~~~~W~  101 (120)
                      |.|+++||++++              ++..++|.
T Consensus        97 s~Fpl~wlker~fs~~~~~~~~r~~yrp~~qlWg  130 (407)
T KOG3888|consen   97 SQFPLQWLKERCFSSQVRQRYLREVYRPPPQLWG  130 (407)
T ss_pred             ccCCHHHHHhhCcchHHHHHHHHHhcCCchhhcc
Confidence            689999999887              66667776

>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase

Probab=99.70  E-value=6.5e-18  Score=137.40  Aligned_cols=66  Identities=9%  Similarity=0.038  Sum_probs=55.8

Q ss_pred             eechHHHhhcCCCCcceecCCCCeeee--ecc---cceeeeEEEEecCeeEEEEeCCCCceecCCHHHHHhhc
Q 048171           26 TLSAEYLRIHSPAADGKIRSVGGEKVI--FGR---RHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLG   93 (120)
Q Consensus        26 ~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~---~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wLr~~~   93 (120)
                      .||++||||||+|+.|+++.++||.+.  .++   .+|.+.++.++++ .|+|+|+|||. |.|+++||++++
T Consensus         1 ~f~~iWLRD~c~c~~c~~~~t~qRl~~~~~i~~~~~~i~~~~~~~~~~-~l~i~W~dgh~-s~y~~~wL~~~~   71 (362)
T TIGR02410         1 IFHNVWLRDNCTCQECYHLATHQRLLNSFDITSLSEDIKPATVIIDED-TLRVTWPDGHV-SKFKEDWLIRHS   71 (362)
T ss_pred             CCCCeeeecCCCCCccCCCCCCCcccchhhCCCcccCccccEEEEeCC-eEEEEecCCCc-eecCHHHHHhcc
Confidence            489999999999999997666666542  344   8999999998876 59999999996 689999999876

Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.

>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]

Probab=99.38  E-value=4.2e-13  Score=106.96  Aligned_cols=81  Identities=17%  Similarity=0.114  Sum_probs=67.1

Q ss_pred             CEEeechHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEecCeeEEEEeCCCCceecCCHHHHHhhcc------
Q 048171           23 SKFTLSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYFYYLGS------   94 (120)
Q Consensus        23 ~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wLr~~~~------   94 (120)
                      ....+|++||||+|+|+.|++-++.||+..  +++..|.|..|.+++- .|+|+|+|||. +-|..+|+-+...      
T Consensus        16 ~~~~~~~vWLRDHCrs~~cyn~~TnQR~~D~~sl~~~i~p~~v~~De~-tLq~~W~DgH~-skydl~~i~~~~~e~g~~s   93 (371)
T KOG3889|consen   16 SKLIMPFVWLRDHCRSQKCYNLPTNQRKCDITSLSKIIHPNQVIIDEA-TLQIVWIDGHQ-SKYDLGNIIREGKEEGNVS   93 (371)
T ss_pred             ceEEeeeeehhhhcchhhhcCCccccccccccccchhcCcceEEEcCc-EEEEEeccccc-cccchhHHhhhhhhhcccc
Confidence            467899999999999999998888888854  4688899999999875 69999999997 5899999976652      


Q ss_pred             ---CchHHHHHHHH
Q 048171           95 ---NKFTLMRNYIK  105 (120)
Q Consensus        95 ---~~~~~W~~y~~  105 (120)
                         ...++|-+-+.
T Consensus        94 k~~~~~~lWNs~i~  107 (371)
T KOG3889|consen   94 KDNKIYELWNSSIS  107 (371)
T ss_pred             cccccccchhhHHH
Confidence               23678984443

>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins

Probab=97.35  E-value=0.00018  Score=47.78  Aligned_cols=36  Identities=6%  Similarity=0.048  Sum_probs=26.8

Q ss_pred             EEEEe-cCeeEEEEeCCCCceecCCHHHHHhhccCchH
Q 048171           62 SAEPV-GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFT   98 (120)
Q Consensus        62 ~v~~~-g~yal~I~WsDGH~sgiy~~~wLr~~~~~~~~   98 (120)
                      +|++. ++..|.|.|+||+. +.|++.|||.+|..+.+
T Consensus         2 ~i~l~~~~~~l~i~w~DG~~-~~~~~~~LRd~C~Ca~C   38 (89)
T PF06155_consen    2 EIKLDKDERHLEIEWSDGQE-SRFPYEWLRDNCPCAEC   38 (89)
T ss_dssp             EEEEECCTTEEEEEETTSEE-EEEEHHHHHHT-SSSST
T ss_pred             eEEEecCCCEEEEEECCCCE-EEECHHHHhccCCChhh
Confidence            34443 34589999999996 68999999999955544

; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.

>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]

Probab=96.51  E-value=0.002  Score=53.41  Aligned_cols=33  Identities=9%  Similarity=0.187  Sum_probs=29.2

Q ss_pred             cCCceEEEEeCCCCEEeechHHHhhcCCCCcce
Q 048171           10 YRLFQVEIEFANGSKFTLSAEYLRIHSPAADGK   42 (120)
Q Consensus        10 ~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~   42 (120)
                      .+.+.|.|+|+||+.++||..|||+.|....-.
T Consensus        82 ed~k~l~I~W~Dgh~s~Fpl~wlker~fs~~~~  114 (407)
T KOG3888|consen   82 EDRKSLVIKWSDGHHSQFPLQWLKERCFSSQVR  114 (407)
T ss_pred             ccCcEEEEEecCCCcccCCHHHHHhhCcchHHH
Confidence            456899999999999999999999999888643

>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase

Probab=95.52  E-value=0.013  Score=47.81  Aligned_cols=27  Identities=15%  Similarity=0.235  Sum_probs=24.0

Q ss_pred             CCceEEEEeCCCCEEeechHHHhhcCC
Q 048171           11 RLFQVEIEFANGSKFTLSAEYLRIHSP   37 (120)
Q Consensus        11 ~~~~L~V~W~DG~~~~~~~~wLRdnCp   37 (120)
                      .++.|+|+|+||+.++|+.-|||.+|.
T Consensus        46 ~~~~l~i~W~dgh~s~y~~~wL~~~~~   72 (362)
T TIGR02410        46 DEDTLRVTWPDGHVSKFKEDWLIRHSY   72 (362)
T ss_pred             eCCeEEEEecCCCceecCHHHHHhccC
Confidence            345699999999999999999999874

Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.

>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase

Probab=94.49  E-value=0.05  Score=44.40  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=22.7

Q ss_pred             ceEEEEeCCCCEEeechHHHhhcCC
Q 048171           13 FQVEIEFANGSKFTLSAEYLRIHSP   37 (120)
Q Consensus        13 ~~L~V~W~DG~~~~~~~~wLRdnCp   37 (120)
                      ..+.|.|+||+.+.|++.|||++|-
T Consensus        59 ~~~~i~w~DgH~s~y~~~wL~~~~~   83 (366)
T TIGR02409        59 NLVVIFWPDGHLSEFPAEWLKKRCY   83 (366)
T ss_pred             cEEEEEecCCCceEcCHHHHhhccC
Confidence            4589999999999999999999874

Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.

>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed

Probab=88.98  E-value=0.19  Score=32.18  Aligned_cols=29  Identities=28%  Similarity=0.618  Sum_probs=23.6

Q ss_pred             eeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171           60 IMSAEPVGNYGVRIVFDDLHKTGIYSWDYF   89 (120)
Q Consensus        60 ~~~v~~~g~yal~I~WsDGH~sgiy~~~wL   89 (120)
                      +++|.+.++|.|.|+|+||.. .+|+...+
T Consensus         1 i~~V~~~~~~~L~v~f~dG~~-~~~dl~~~   29 (79)
T PF10387_consen    1 IISVKPLDDYRLRVTFSDGET-RIFDLSPL   29 (79)
T ss_dssp             -EEEEEETTTEEEEEETTS-E-EEEECCCS
T ss_pred             CeEEEEcCCcEEEEEEcCCCE-EEEEhHHh
Confidence            467888888999999999995 78998877

The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	120
2l6n_A	132	Nmr Solution Structure Of The Protein Yp_001092504.		1e-21
2l6p_A	124	Nmr Solution Structure Of The Protein Np_253742.1 L		2e-17
3luu_A	101	Crystal Structure Of Protein With Unknown Function		3e-09

>pdb|2L6N|A Chain A, Nmr Solution Structure Of The Protein Yp_001092504.1 Length = 132

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 14  QVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
           Q+EI F NG +FTLS E LR++SP+A+  +   G   ++  +++V I +  PVGNY V++
Sbjct: 22  QLEISFDNGQQFTLSCELLRVYSPSAE--VHGHGNPVLVTHKKNVNINAITPVGNYAVKL 79
Query: 74  VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDP 116
           VFDD H TG+YSW   Y L SN+  L  NY+  L+    SR+P
Sbjct: 80  VFDDGHDTGLYSWKVLYDLASNQVDLWENYLARLRAAKASREP 122

>pdb|2L6P|A Chain A, Nmr Solution Structure Of The Protein Np_253742.1 Length = 124

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query: 25  FTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIY 84
           + L AE+LR+HSP+A+  ++  G   + +G+ +VG++  EP G Y +++ FDD H +G++
Sbjct: 26  YDLPAEFLRVHSPSAE--VQGHGNPVLQYGKLNVGLVGVEPAGQYALKLSFDDGHDSGLF 83
Query: 85  SWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHK 118
           +WDY Y L + K  L  +Y+  L   G SRDP +
Sbjct: 84  TWDYLYELATRKDQLWADYLAELASAGKSRDPDE 117

>pdb|3LUU|A Chain A, Crystal Structure Of Protein With Unknown Function Which Belongs To Pfam Duf971 Family (afe_2189) From Acidithiobacillus Ferrooxidans Atcc 23270 At 1.93 A Resolution Length = 101

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 16  EIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVF 75
           E+++A+G    L+ E+LR+  P A+ K  +    +++ G+ HV ++   PVG+Y V++ F
Sbjct: 22  EVDWADGHTSRLTFEHLRVECPCAECKGHTPDQAQIVTGKEHVSVVEVVPVGHYAVQLHF 81
Query: 76  DDLHKTGIYSWDYFYYLGSN 95
            D H TGI++W+Y   L + 
Sbjct: 82  SDGHNTGIFTWEYLRRLDAE 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
2l6p_A	124	PHAC1, PHAC2 and PHAD genes; DUF971, structural ge	2e-34
2l6n_A	132	Uncharacterized protein YP_001092504.1; PJ06155C,	4e-34
3luu_A	101	Uncharacterized protein; AFE_2189, PFAM DUF971 fam	8e-25

>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa} Length = 124

 Score =  114 bits (287), Expect = 2e-34
 Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 14  QVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
            + + +   S + L AE+LR+HSP+A+ +    G   + +G+ +VG++  EP G Y +++
Sbjct: 16  TLTLRYGEDS-YDLPAEFLRVHSPSAEVQGH--GNPVLQYGKLNVGLVGVEPAGQYALKL 72

Query: 74  VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDPHK 118
            FDD H +G+++WDY Y L + K  L  +Y+  L   G SRDP +
Sbjct: 73  SFDDGHDSGLFTWDYLYELATRKDQLWADYLAELASAGKSRDPDE 117

>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica} Length = 132

 Score =  114 bits (286), Expect = 4e-34
 Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 14  QVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
           Q+EI F NG +FTLS E LR++SP+A+  +   G   ++  +++V I +  PVGNY V++
Sbjct: 22  QLEISFDNGQQFTLSCELLRVYSPSAE--VHGHGNPVLVTHKKNVNINAITPVGNYAVKL 79

Query: 74  VFDDLHKTGIYSWDYFYYLGSNKFTLMRNYIKTLKKHGLSRDP 116
           VFDD H TG+YSW   Y L SN+  L  NY+  L+    SR+P
Sbjct: 80  VFDDGHDTGLYSWKVLYDLASNQVDLWENYLARLRAAKASREP 122

>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans} Length = 101

 Score = 89.7 bits (222), Expect = 8e-25
 Identities = 27/81 (33%), Positives = 50/81 (61%)

Query: 14  QVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRI 73
            +E+++A+G    L+ E+LR+  P A+ K  +    +++ G+ HV ++   PVG+Y V++
Sbjct: 20  VMEVDWADGHTSRLTFEHLRVECPCAECKGHTPDQAQIVTGKEHVSVVEVVPVGHYAVQL 79

Query: 74  VFDDLHKTGIYSWDYFYYLGS 94
            F D H TGI++W+Y   L +
Sbjct: 80  HFSDGHNTGIFTWEYLRRLDA 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
2l6n_A	132	Uncharacterized protein YP_001092504.1; PJ06155C,	100.0
2l6p_A	124	PHAC1, PHAC2 and PHAD genes; DUF971, structural ge	100.0
3luu_A	101	Uncharacterized protein; AFE_2189, PFAM DUF971 fam	100.0
3o2g_A	388	Gamma-butyrobetaine dioxygenase; gamma-butyrobetai	99.92
3luu_A	101	Uncharacterized protein; AFE_2189, PFAM DUF971 fam	97.74
2l6n_A	132	Uncharacterized protein YP_001092504.1; PJ06155C,	96.55
2l6p_A	124	PHAC1, PHAC2 and PHAD genes; DUF971, structural ge	95.93
3o2g_A	388	Gamma-butyrobetaine dioxygenase; gamma-butyrobetai	95.89
2auw_A	170	Hypothetical protein NE0471; alpha-beta structure,	83.94

>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}

Probab=100.00  E-value=3.3e-41  Score=240.75  Aligned_cols=110  Identities=42%  Similarity=0.694  Sum_probs=102.0

Q ss_pred             eecCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeeeecccceeeeEEEEecCeeEEEEeCCCCceecCCHH
Q 048171            8 LLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWD   87 (120)
Q Consensus         8 ~~~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~   87 (120)
                      ....++.|+|.|+||.++.||++|||+|||||+|+++.  |+.+..++.+|.|.+|+++|+|+|+|+|+|||.||+|+|+
T Consensus        16 l~~~~~~L~v~w~DG~~~~~~~~wLRd~Cpcaec~~~~--qr~l~~~~~dv~i~~i~~vG~yaL~I~wsDGH~SGiYs~~   93 (132)
T 2l6n_A           16 LKRKSRQLEISFDNGQQFTLSCELLRVYSPSAEVHGHG--NPVLVTHKKNVNINAITPVGNYAVKLVFDDGHDTGLYSWK   93 (132)
T ss_dssp             EEGGGTEEEEEETTSCEEEEEHHHHHHSCSCSSSSSSS--CCCCCCCCSSCCEEEEEEETTTEEEEEETTTBCCCCEEHH
T ss_pred             EecCCCEEEEEECCCCEEEeCHHHHHhcCCCcccCCcc--ccccccCCCCcceEEEEecCCceEEEEeCCCCccCEECHH
Confidence            33467899999999999999999999999999999654  7776678899999999999999999999999998899999


Q ss_pred             HHHhhccCchHHHHHHHHHHHHcCCCCCCCCC
Q 048171           88 YFYYLGSNKFTLMRNYIKTLKKHGLSRDPHKK  119 (120)
Q Consensus        88 wLr~~~~~~~~~W~~y~~~~~~~~~~~~~~~~  119 (120)
                      ||++++..+..+|++||++|+++|+|||+++.
T Consensus        94 ~L~~l~~~~~~~w~~yl~~l~~~g~~r~~~~~  125 (132)
T 2l6n_A           94 VLYDLASNQVDLWENYLARLRAAKASREPLID  125 (132)
T ss_dssp             HHHHHHTTTTHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHcCCCCCCccc
Confidence            99999999999999999999999999999875

>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.8e-40  Score=234.61  Aligned_cols=107  Identities=34%  Similarity=0.732  Sum_probs=100.2

Q ss_pred             cCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeeeecccceeeeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171           10 YRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYF   89 (120)
Q Consensus        10 ~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wL   89 (120)
                      ..++.|+|.|+ |.++.||++|||+|||||+|+++  +|+.+...+.+|.|.+++++|+|+|+|+|+|||.+|+|+|+||
T Consensus        12 ~~~~~L~v~w~-G~~~~~~~~wLRd~Cpcaec~~~--~qr~l~~~~~dv~i~~i~~~G~yaL~I~wsDGH~sgiY~~~~L   88 (124)
T 2l6p_A           12 KASKTLTLRYG-EDSYDLPAEFLRVHSPSAEVQGH--GNPVLQYGKLNVGLVGVEPAGQYALKLSFDDGHDSGLFTWDYL   88 (124)
T ss_dssp             TTTCEEEEEET-TEEEEEEHHHHHHTCCCSSCCSC--CCCCCCCSCTTCCEEEEEECSSSCEEEEETTSCCCCCCTTHHH
T ss_pred             cCCCEEEEEEC-CEEEEeCHHHHHhcCCCcccCCC--CccccccCCCCcceEEEEEcCCceEEEEECCCCcceEECHHHH
Confidence            45788999999 99999999999999999999964  7777667789999999999999999999999998799999999


Q ss_pred             HhhccCchHHHHHHHHHHHHcCCCCCCCCC
Q 048171           90 YYLGSNKFTLMRNYIKTLKKHGLSRDPHKK  119 (120)
Q Consensus        90 r~~~~~~~~~W~~y~~~~~~~~~~~~~~~~  119 (120)
                      ++++..+..+|++||++|+++|+|||+++.
T Consensus        89 ~~l~~~~~~~~~~y~~~l~~~g~~r~~~~~  118 (124)
T 2l6p_A           89 YELATRKDQLWADYLAELASAGKSRDPDES  118 (124)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHTTCCSSTTCC
T ss_pred             HHhhhhHHHHHHHHHHHHHHcCCCCCCccc
Confidence            999999999999999999999999999874

>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}

Probab=100.00  E-value=4.4e-33  Score=189.87  Aligned_cols=85  Identities=32%  Similarity=0.640  Sum_probs=70.1

Q ss_pred             cCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeeeecccceeeeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171           10 YRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVIFGRRHVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYF   89 (120)
Q Consensus        10 ~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~~~~~di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wL   89 (120)
                      .+++.|+|.|+||+++.||++|||+|||||+|+++.++|+.+..++.+|.|.+++++|+|+|+|+|+|||++|+|+|+||
T Consensus        16 ~~~~~L~v~w~DG~~~~~~~~wLRd~c~ca~c~~~~t~qr~l~~~~~~v~~~~i~~~g~yal~i~wsDGH~~s~Y~~~~L   95 (101)
T 3luu_A           16 MISRVMEVDWADGHTSRLTFEHLRVECPCAECKGHTPDQAQIVTGKEHVSVVEVVPVGHYAVQLHFSDGHNTGIFTWEYL   95 (101)
T ss_dssp             TTTTEEEEEETTSCEEEEEHHHHHHTCCCC----------CCCCCCTTCCEEEEEEETTTEEEEEETTSCCCCEEEHHHH
T ss_pred             CCCCEEEEEeCCCCEEEECHHHHHhhCCChhhcCccCCccccccCCCCcceeEEEECCCCeEEEEECCCCceeEECHHHH
Confidence            45689999999999999999999999999999988888887678899999999999999999999999997799999999


Q ss_pred             Hhhcc
Q 048171           90 YYLGS   94 (120)
Q Consensus        90 r~~~~   94 (120)
                      ++++.
T Consensus        96 ~~~~~  100 (101)
T 3luu_A           96 RRLDA  100 (101)
T ss_dssp             HHHTT
T ss_pred             HHhhh
Confidence            99874

>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A

Probab=99.92  E-value=4.8e-25  Score=178.93  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=77.5

Q ss_pred             eeeeecCCceEEEEeCCCCEEeechHHHhhcCCCCcceecCCCCeeee--ecccceeeeEEEEecCeeEEEEeCCCCcee
Q 048171            5 LCLLLYRLFQVEIEFANGSKFTLSAEYLRIHSPAADGKIRSVGGEKVI--FGRRHVGIMSAEPVGNYGVRIVFDDLHKTG   82 (120)
Q Consensus         5 ~~~~~~~~~~L~V~W~DG~~~~~~~~wLRdnCpCa~C~~~~~~~~~l~--~~~~di~~~~v~~~g~yal~I~WsDGH~sg   82 (120)
                      +..+..+++.|.|+|+||.++.||++|||||||||.|+++.++|+.+.  .+|.+|++.+++++| |+|+|.|+|||. |
T Consensus         8 ~~~~~~~~~~l~v~w~dG~~~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~-~~l~i~w~dgH~-s   85 (388)
T 3o2g_A            8 KAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDR-KKVYITWPDEHY-S   85 (388)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEHHHHHHTCCSTTTEEGGGTEECCCGGGCCTTCCCSEEEECS-SEEEEECTTSCE-E
T ss_pred             eeeecCCCCEEEEEECCCCeeeeCHHHHHhcCCCccccCccccccccCHhhcCcccccceEEeeC-CEEEEEecCCCc-e
Confidence            455667889999999999999999999999999999997666655543  468999999999998 799999999995 7


Q ss_pred             cCCHHHHHhhccC
Q 048171           83 IYSWDYFYYLGSN   95 (120)
Q Consensus        83 iy~~~wLr~~~~~   95 (120)
                      +|+++||++++..
T Consensus        86 ~y~~~~L~~~~~~   98 (388)
T 3o2g_A           86 EFQADWLKKRCFS   98 (388)
T ss_dssp             EEEHHHHHHTCCS
T ss_pred             EeCHHHHHhhcCC
Confidence            9999999998744

>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}

Probab=97.74  E-value=2.6e-05  Score=52.11  Aligned_cols=40  Identities=8%  Similarity=0.030  Sum_probs=32.0

Q ss_pred             eeeeEEEEe-cCeeEEEEeCCCCceecCCHHHHHhhccCchH
Q 048171           58 VGIMSAEPV-GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFT   98 (120)
Q Consensus        58 i~~~~v~~~-g~yal~I~WsDGH~sgiy~~~wLr~~~~~~~~   98 (120)
                      ..|++|.+. ++..|.|.|+|||. +.|++.|||.+|..+.+
T Consensus         7 ~~P~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~c~ca~c   47 (101)
T 3luu_A            7 TQPLEIRPLMISRVMEVDWADGHT-SRLTFEHLRVECPCAEC   47 (101)
T ss_dssp             GCEEEEEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCCC--
T ss_pred             CCCeEEEEeCCCCEEEEEeCCCCE-EEECHHHHHhhCCChhh
Confidence            467888876 45689999999996 68999999999976655

>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}

Probab=96.55  E-value=0.0017  Score=45.54  Aligned_cols=40  Identities=10%  Similarity=0.044  Sum_probs=30.7

Q ss_pred             eeeeEEEEe-cCeeEEEEeCCCCceecCCHHHHHhhccCchH
Q 048171           58 VGIMSAEPV-GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFT   98 (120)
Q Consensus        58 i~~~~v~~~-g~yal~I~WsDGH~sgiy~~~wLr~~~~~~~~   98 (120)
                      +.|+.+.+. .+..|.|.|+||+. ..|++.|||.+|..+.+
T Consensus         9 ~~p~~i~l~~~~~~L~v~w~DG~~-~~~~~~wLRd~Cpcaec   49 (132)
T 2l6n_A            9 PKVTGLKLKRKSRQLEISFDNGQQ-FTLSCELLRVYSPSAEV   49 (132)
T ss_dssp             CCEEEEEEEGGGTEEEEEETTSCE-EEEEHHHHHHSCSCSSS
T ss_pred             CCCeeEEEecCCCEEEEEECCCCE-EEeCHHHHHhcCCCccc
Confidence            446666665 33489999999996 68999999999966544

>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}

Probab=95.93  E-value=0.0042  Score=42.98  Aligned_cols=30  Identities=17%  Similarity=0.336  Sum_probs=24.8

Q ss_pred             CCceEEEEeCCCC-EEeechHHHhhcCCCCc
Q 048171           11 RLFQVEIEFANGS-KFTLSAEYLRIHSPAAD   40 (120)
Q Consensus        11 ~~~~L~V~W~DG~-~~~~~~~wLRdnCpCa~   40 (120)
                      .+..|.|.|+||+ ++.|++.|||++|....
T Consensus        66 G~yaL~I~wsDGH~sgiY~~~~L~~l~~~~~   96 (124)
T 2l6p_A           66 GQYALKLSFDDGHDSGLFTWDYLYELATRKD   96 (124)
T ss_dssp             SSSCEEEEETTSCCCCCCTTHHHHHHHTTHH
T ss_pred             CCceEEEEECCCCcceEECHHHHHHhhhhHH
Confidence            3457999999998 67999999999975543

>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A

Probab=95.89  E-value=0.006  Score=48.97  Aligned_cols=37  Identities=16%  Similarity=0.139  Sum_probs=28.3

Q ss_pred             eEEEEe-cCeeEEEEeCCCCceecCCHHHHHhhccCchH
Q 048171           61 MSAEPV-GNYGVRIVFDDLHKTGIYSWDYFYYLGSNKFT   98 (120)
Q Consensus        61 ~~v~~~-g~yal~I~WsDGH~sgiy~~~wLr~~~~~~~~   98 (120)
                      .++++. ++..|.|.|+||+. +.|++-|||.+|..+.+
T Consensus         7 ~~~~~~~~~~~l~v~w~dG~~-~~~~~~wLRd~C~c~~c   44 (388)
T 3o2g_A            7 QKAEALDGAHLMQILWYDEEE-SLYPAVWLRDNCPCSDC   44 (388)
T ss_dssp             EEEEEETTTTEEEEEETTSCE-EEEEHHHHHHTCCSTTT
T ss_pred             eeeeecCCCCEEEEEECCCCe-eeeCHHHHHhcCCCccc
Confidence            345544 44589999999996 68999999999855443

>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1

Probab=83.94  E-value=0.64  Score=33.67  Aligned_cols=32  Identities=9%  Similarity=0.052  Sum_probs=26.6

Q ss_pred             ceeeeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171           57 HVGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYF   89 (120)
Q Consensus        57 di~~~~v~~~g~yal~I~WsDGH~sgiy~~~wL   89 (120)
                      -.++++|++.++|.|.|+|+||-. ++|+..=|
T Consensus         8 ~p~V~~V~~l~~Y~L~v~F~dGe~-~~~Dl~pl   39 (170)
T 2auw_A            8 FPKLTAVEALAPYRLRTTWSTGEV-LEVDVGDI   39 (170)
T ss_dssp             CCCEEEEEECSTTEEEEEETTSCE-EEEECHHH
T ss_pred             CcceEEEEECCCeEEEEEEeCCCE-EEEEhHHh
Confidence            357899999989999999999995 79986533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	120
d2auwa2	84	Hypothetical protein NE0471 N-terminal domain {Nit	91.7

>d2auwa2 d.331.1.1 (A:4-87) Hypothetical protein NE0471 N-terminal domain {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: NE0471 N-terminal domain-like
superfamily: NE0471 N-terminal domain-like
family: NE0471 N-terminal domain-like
domain: Hypothetical protein NE0471 N-terminal domain
species: Nitrosomonas europaea [TaxId: 915]

Probab=91.70  E-value=0.053  Score=33.43  Aligned_cols=31  Identities=10%  Similarity=0.055  Sum_probs=26.1

Q ss_pred             eeeeEEEEecCeeEEEEeCCCCceecCCHHHH
Q 048171           58 VGIMSAEPVGNYGVRIVFDDLHKTGIYSWDYF   89 (120)
Q Consensus        58 i~~~~v~~~g~yal~I~WsDGH~sgiy~~~wL   89 (120)
                      .++++|++.++|.|.|+|+||-. ++|...=+
T Consensus         4 pkv~~V~~l~~y~L~v~F~dG~~-~~~Dl~~~   34 (84)
T d2auwa2           4 PKLTAVEALAPYRLRTTWSTGEV-LEVDVGDI   34 (84)
T ss_dssp             CCEEEEEECSTTEEEEEETTSCE-EEEECHHH
T ss_pred             cceEEEEECCCcEEEEEEcCCCE-EEEEhHHh
Confidence            36889999999999999999985 78986643