Citrus Sinensis ID: 048175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
ENKINHWMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLESFCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDAMSTDDWGGACYIHIVLFFFG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEccccccccccccccccccccccccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
ENKINHWMLNLLMGflspqidleysdgptlpthgsdefrpFVRCLLESFCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYryvpfsfvkqrydgkmpsssdamstddwggacYIHIVLFFFG
Flexible Loop (DISEMBL)
ENKINHWMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLESFCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDAMSTDDWGGACYIHIVLFFFG
Low Complexity Region (SEG)
ENKINHWMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLESFCIGFLMTFFSAFDVHVFWPIllfywltlftltMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDAMSTDDWGGACYIHIVLFFFG
Disordered region (IsUnstruct)
***INHWMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLESFCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRY*************DDWGGACYIHIVLFFF*
Disordered Region (DISOPRED)
*NKINHWMLNLLMGFLSPQI*******************PFVRCLLESFCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSF************************CYIHIVLFFFG
Disordered Region (DISEMBL)
ENKINHWMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLESFCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYD***********TDDWGGACYIHIVLFFFG
Disordered Region (DISPRO)
ENKINHWMLNLLMGFLSPQIDLE***GPTLPTHGSDEFRPFVRCLLESFCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQ*****************WGGACYIHIVLFFFG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ENKINHWMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLESFCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDAMSTDDWGGACYIHIVLFFFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
O48670	191	Protein RER1A OS=Arabidop	yes	no	0.805	0.565	0.633	6e-36
O48671	195	Protein RER1B OS=Arabidop	no	no	0.805	0.553	0.613	8e-35
Q9ZWI7	212	Protein RER1C OS=Arabidop	no	no	0.820	0.518	0.590	2e-31
Q498C8	196	Protein RER1 OS=Rattus no	yes	no	0.738	0.505	0.5	1e-24
Q9CQU3	196	Protein RER1 OS=Mus muscu	yes	no	0.738	0.505	0.5	1e-24
Q5R5U4	196	Protein RER1 OS=Pongo abe	yes	no	0.738	0.505	0.5	2e-24
O15258	196	Protein RER1 OS=Homo sapi	yes	no	0.738	0.505	0.5	2e-24
Q9ZPV7	221	Protein RER1D OS=Arabidop	no	no	0.708	0.429	0.547	3e-24
Q5ZHM5	196	Protein RER1 OS=Gallus ga	yes	no	0.738	0.505	0.491	4e-24
A5PJ65	196	Protein RER1 OS=Bos tauru	yes	no	0.738	0.505	0.491	7e-24

>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 89/120 (74%), Gaps = 12/120 (10%)

Query: 7   WMLNLLMGFLSPQIDLE---YSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFL 54
           ++LNLL+GFLSP +D E    SDGP+LPT GSDEF+PF+R L E         +FCI FL
Sbjct: 71  YLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFL 130

Query: 55  MTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDA 114
           MTFFS FDV VFWPILL YW+ LF LTMRRQI HMIKY+Y+PFSF KQ+Y G+  S S A
Sbjct: 131 MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGGRSSSGSRA 190

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
Arabidopsis thaliana (taxid: 3702)

>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2

 Score =  145 bits (366), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 88/119 (73%), Gaps = 11/119 (9%)

Query: 7   WMLNLLMGFLSPQID--LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
           ++LNLL+GFLSP +D  LE SDG TLPT GSDEF+PF+R L E         +FCI FLM
Sbjct: 71  YLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLM 130

Query: 56  TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDA 114
           TFFS FDV VFWPILL YW+ LF LTMRRQI HMIK++Y+PFS  KQ+Y G+  S++  
Sbjct: 131 TFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRKSSANSG 189

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 88/122 (72%), Gaps = 12/122 (9%)

Query: 4   INHWMLNLLMGFLSPQIDLEYS--DGPTLPTHGSDEFRPFVRCLLE---------SFCIG 52
           I  ++LNL++ FLSPQ D E S   G +LPT  SDE+RPFVR L E         +F IG
Sbjct: 90  IGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIG 149

Query: 53  FLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSS 112
           F+MTFF  FDV VFWPILLFYW+ LF LTMR+QI HMIKYRYVPFSF K++Y GK P+ +
Sbjct: 150 FMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPAPT 208

Query: 113 DA 114
           ++
Sbjct: 209 ES 210

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 13/112 (11%)

Query: 9   LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
           LNL + FLSP++D     +  DGP+LPT  ++EFRPF+R L E            +  + 
Sbjct: 76  LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMIC 135

Query: 56  TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
           TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+  K+RY GK
Sbjct: 136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 13/112 (11%)

Query: 9   LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
           LNL + FLSP++D     +  DGP+LPT  ++EFRPF+R L E            +  + 
Sbjct: 76  LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMIC 135

Query: 56  TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
           TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+  K+RY GK
Sbjct: 136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Mus musculus (taxid: 10090)

>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 13/112 (11%)

Query: 9   LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
           LNL + FLSP++D     +  DGP+LPT  ++EFRPF+R L E            +  + 
Sbjct: 76  LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVC 135

Query: 56  TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
           TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+  K+RY GK
Sbjct: 136 TFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Pongo abelii (taxid: 9601)

>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 13/112 (11%)

Query: 9   LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
           LNL + FLSP++D     +  DGP+LPT  ++EFRPF+R L E            +  + 
Sbjct: 76  LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVC 135

Query: 56  TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
           TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+  K+RY GK
Sbjct: 136 TFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Homo sapiens (taxid: 9606)

>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 73/106 (68%), Gaps = 11/106 (10%)

Query: 7   WMLNLLMGFLSPQID--LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
           ++LNLL+GFLSP++D  LE  D  +LP   SDE++PFVR L E         +F + F+M
Sbjct: 75  YILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVM 134

Query: 56  TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVK 101
           TFFS  DV VFWPILL YWL L++LTM+R I+HM KYRY PF   K
Sbjct: 135 TFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 74/112 (66%), Gaps = 13/112 (11%)

Query: 9   LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
           LNL + FLSP++D     +  DGP+LPT  ++EFRPF+R L E            +    
Sbjct: 76  LNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMAC 135

Query: 56  TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
           TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+  K++Y GK
Sbjct: 136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKYKGK 187

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Gallus gallus (taxid: 9031)

>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 74/112 (66%), Gaps = 13/112 (11%)

Query: 9   LNLLMGFLSPQID----LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
           LNL + FLSP++D     +  DGP+LPT  ++EFRPF+R L E            +  + 
Sbjct: 76  LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVC 135

Query: 56  TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
           TFF AF+V VFWPIL+ Y++ LF +TM+RQI HMIKYRY+PF+  K+ Y GK
Sbjct: 136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGK 187

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
356496931	191	PREDICTED: protein RER1A-like [Glycine m	0.835	0.586	0.685	4e-39
225438813	204	PREDICTED: protein RER1A [Vitis vinifera	0.820	0.539	0.696	9e-39
388502768	191	unknown [Lotus japonicus]	0.843	0.591	0.682	1e-38
224094278	200	predicted protein [Populus trichocarpa]	0.805	0.54	0.700	2e-38
255567873	206	rer1 protein, putative [Ricinus communis	0.813	0.529	0.697	4e-38
388509732	192	unknown [Medicago truncatula]	0.843	0.588	0.648	2e-37
449462214	194	PREDICTED: protein RER1A-like isoform 2	0.843	0.582	0.629	3e-36
302774703	192	hypothetical protein SELMODRAFT_171760 [	0.850	0.593	0.604	3e-35
326499880	212	predicted protein [Hordeum vulgare subsp	0.820	0.518	0.601	3e-35
326527071	213	predicted protein [Hordeum vulgare subsp	0.820	0.516	0.601	4e-35

>gi|356496931|ref|XP_003517318.1| PREDICTED: protein RER1A-like [Glycine max]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 94/121 (77%), Gaps = 9/121 (7%)

Query: 7   WMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLMTF 57
           ++LNLL+GFLSPQ+D E SDGPTLPT GSDEFRPFVR L E         +FCI F+MTF
Sbjct: 71  YILNLLIGFLSPQVDPEISDGPTLPTRGSDEFRPFVRRLPEFKFWYSITKAFCIAFVMTF 130

Query: 58  FSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDAMST 117
           FSAFDV VFWPILLFYW+ LFTLTMRRQI HMIKY+YVPFSF K RYDGK  +   + + 
Sbjct: 131 FSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKLRYDGKRAAEGTSPTM 190

Query: 118 D 118
           D
Sbjct: 191 D 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438813|ref|XP_002283333.1| PREDICTED: protein RER1A [Vitis vinifera] gi|296082366|emb|CBI21371.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 95/122 (77%), Gaps = 12/122 (9%)

Query: 7   WMLNLLMGFLSPQIDLEYS---DGPTLPTHGSDEFRPFVRCLLE---------SFCIGFL 54
           ++LNLL+GFLSPQ+D E     DGPTLPT GSDEFRPFVR L E         +FCI F+
Sbjct: 79  YILNLLIGFLSPQVDPEIQELVDGPTLPTRGSDEFRPFVRRLPEFKFWYSITKAFCIAFV 138

Query: 55  MTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDA 114
           MTFFS FDV VFWPILLFYW+ LFTLTMRRQIMHMIKY+YVPFSF KQRY GK  SS++ 
Sbjct: 139 MTFFSVFDVPVFWPILLFYWMVLFTLTMRRQIMHMIKYKYVPFSFGKQRYGGKRTSSTED 198

Query: 115 MS 116
           MS
Sbjct: 199 MS 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502768|gb|AFK39450.1| unknown [Lotus japonicus]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 94/123 (76%), Gaps = 10/123 (8%)

Query: 7   WMLNLLMGFLSPQIDLE-YSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLMT 56
           ++LNLL+GFLSPQ+D E Y DGPTLPT GSDEFRPFVR L E         +FCI F+MT
Sbjct: 69  YILNLLIGFLSPQVDPEVYDDGPTLPTSGSDEFRPFVRRLPEFKFWYSITKAFCIAFVMT 128

Query: 57  FFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDAMS 116
           FFSAFDV VFWPILLFYW+ LFTLTMRRQI HMIKY+YVPFSF KQRY GK  S+     
Sbjct: 129 FFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYTGKRASAESKSL 188

Query: 117 TDD 119
            +D
Sbjct: 189 PED 191

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094278|ref|XP_002310121.1| predicted protein [Populus trichocarpa] gi|222853024|gb|EEE90571.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/117 (70%), Positives = 91/117 (77%), Gaps = 9/117 (7%)

Query: 7   WMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLMTF 57
           ++LNLL+GFLSPQID E  DGP+LPT GSDEFRPFVR LLE         +FCI F+MTF
Sbjct: 82  YLLNLLIGFLSPQIDPEIHDGPSLPTRGSDEFRPFVRRLLEFKFWYSITKAFCIAFVMTF 141

Query: 58  FSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDA 114
           FS FDV VFWPILL YW+ LF LTMRRQI HMIKYRYVPFS  KQRYDGK   S+D+
Sbjct: 142 FSVFDVPVFWPILLTYWVVLFVLTMRRQISHMIKYRYVPFSTGKQRYDGKKAPSTDS 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567873|ref|XP_002524914.1| rer1 protein, putative [Ricinus communis] gi|223535749|gb|EEF37411.1| rer1 protein, putative [Ricinus communis]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 94/119 (78%), Gaps = 10/119 (8%)

Query: 7   WMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLMTF 57
           +MLNLL+GFLSPQID E  DGPTLPT GSDEFRPFVR L E         +FC+ FLMTF
Sbjct: 85  YMLNLLIGFLSPQIDPEVLDGPTLPTRGSDEFRPFVRRLPEFKFWYSITKAFCVAFLMTF 144

Query: 58  FSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDAMS 116
           F AF+V VFWPILLFYW+ LF LTMRRQIMHMIKY+YVPFS  KQRY GK  +S+D++S
Sbjct: 145 FDAFNVPVFWPILLFYWVLLFVLTMRRQIMHMIKYKYVPFSIGKQRY-GKKATSTDSIS 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509732|gb|AFK42932.1| unknown [Medicago truncatula]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 95/125 (76%), Gaps = 12/125 (9%)

Query: 7   WMLNLLMGFLSPQID---LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFL 54
           ++LNLL+GFLSPQ+D   L+  +GP+LPT GSDEFRPFVR L E         +FCI F+
Sbjct: 68  YILNLLIGFLSPQVDPEILDADNGPSLPTSGSDEFRPFVRRLPEFKFWYSITKAFCIAFV 127

Query: 55  MTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDA 114
           MTFFSAFDV VFWPILLFYW+ LFTLTMRRQI HMIKY+YVPFSF KQRYD K  S+   
Sbjct: 128 MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQIAHMIKYKYVPFSFGKQRYDRKRASAEST 187

Query: 115 MSTDD 119
             +D+
Sbjct: 188 SLSDN 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462214|ref|XP_004148836.1| PREDICTED: protein RER1A-like isoform 2 [Cucumis sativus] gi|449507345|ref|XP_004163005.1| PREDICTED: protein RER1A-like isoform 2 [Cucumis sativus]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 95/124 (76%), Gaps = 11/124 (8%)

Query: 7   WMLNLLMGFLSPQID--LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
           ++LNLL+GFLSP +D  +E SDGP LPT GSDEFRPF+R L E         +FCI F+M
Sbjct: 71  YILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFRPFIRRLPEFKFWYSFTKAFCIAFVM 130

Query: 56  TFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDAM 115
           TFFS FDV VFWPILL YW+ LF LTMRRQI HMIKY+Y+PFSF KQ++ GK PS+S  +
Sbjct: 131 TFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYLPFSFGKQKHGGKKPSASSVV 190

Query: 116 STDD 119
           ++DD
Sbjct: 191 TSDD 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302774703|ref|XP_002970768.1| hypothetical protein SELMODRAFT_171760 [Selaginella moellendorffii] gi|302818900|ref|XP_002991122.1| hypothetical protein SELMODRAFT_161436 [Selaginella moellendorffii] gi|300141053|gb|EFJ07768.1| hypothetical protein SELMODRAFT_161436 [Selaginella moellendorffii] gi|300161479|gb|EFJ28094.1| hypothetical protein SELMODRAFT_171760 [Selaginella moellendorffii]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 90/124 (72%), Gaps = 10/124 (8%)

Query: 4   INHWMLNLLMGFLSPQIDLEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFL 54
           +  ++LNLL+GFLSPQ+D E S+GP LPT GSDEFRPF+R L E         +FC+ F 
Sbjct: 70  VGIYILNLLIGFLSPQVDPE-SEGPMLPTKGSDEFRPFIRMLPEFKFWYALTKAFCVAFA 128

Query: 55  MTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDA 114
           +TFFS FDV VFWPILL YW+ LF LTM+RQI HMIKY+YVPFS  KQRY GK P+   +
Sbjct: 129 LTFFSIFDVPVFWPILLLYWVVLFALTMKRQIKHMIKYKYVPFSVGKQRYTGKKPAEKAS 188

Query: 115 MSTD 118
            S D
Sbjct: 189 SSRD 192

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326499880|dbj|BAJ90775.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 95/123 (77%), Gaps = 13/123 (10%)

Query: 7   WMLNLLMGFLSPQIDLEYSD----GPTLPTHGSDEFRPFVR---------CLLESFCIGF 53
           ++LNLL+ FLSPQ+D E ++    GP+LPT  SDEFRPFVR          +L++FCI F
Sbjct: 86  YLLNLLIAFLSPQVDPELAEVLGEGPSLPTRSSDEFRPFVRRLPEFKFWYSILKAFCIAF 145

Query: 54  LMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSD 113
            MTFFS FDV VFWPILLFYW+ LFT+TM+RQI+HM+KYRYVPF+F KQRY+GK  +S+D
Sbjct: 146 GMTFFSVFDVPVFWPILLFYWVVLFTVTMKRQILHMVKYRYVPFTFGKQRYNGKRAASAD 205

Query: 114 AMS 116
            ++
Sbjct: 206 DLT 208

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326527071|dbj|BAK04477.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 95/123 (77%), Gaps = 13/123 (10%)

Query: 7   WMLNLLMGFLSPQIDLEYSD----GPTLPTHGSDEFRPFVR---------CLLESFCIGF 53
           ++LNLL+ FLSPQ+D E ++    GP+LPT  SDEFRPFVR          +L++FCI F
Sbjct: 87  YLLNLLIAFLSPQVDPELAEVLGEGPSLPTRSSDEFRPFVRRLPEFKFWYSILKAFCIAF 146

Query: 54  LMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSD 113
            MTFFS FDV VFWPILLFYW+ LFT+TM+RQI+HM+KYRYVPF+F KQRY+GK  +S+D
Sbjct: 147 GMTFFSVFDVPVFWPILLFYWVVLFTVTMKRQILHMVKYRYVPFTFGKQRYNGKRAASAD 206

Query: 114 AMS 116
            ++
Sbjct: 207 DLT 209

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2136373	191	ATRER1A "AT4G39220" [Arabidops	0.805	0.565	0.566	9.1e-29
TAIR|locus:2049354	195	RER1B "AT2G21600" [Arabidopsis	0.791	0.543	0.555	8.2e-28
TAIR|locus:2058583	212	ATRER1C1 "AT2G23310" [Arabidop	0.820	0.518	0.516	2.6e-24
MGI|MGI:1915080	196	Rer1 "RER1 retention in endopl	0.738	0.505	0.473	4.4e-20
RGD|1306324	196	Rer1 "RER1 retention in endopl	0.738	0.505	0.473	4.4e-20
UNIPROTKB|O15258	196	RER1 "Protein RER1" [Homo sapi	0.738	0.505	0.473	7.2e-20
UNIPROTKB|Q5ZHM5	196	RER1 "Protein RER1" [Gallus ga	0.738	0.505	0.491	9.2e-20
UNIPROTKB|I3LJC8	196	LOC100736849 "Uncharacterized	0.805	0.551	0.454	1.9e-19
UNIPROTKB|A5PJ65	196	RER1 "Protein RER1" [Bos tauru	0.738	0.505	0.464	2.5e-19
UNIPROTKB|F6XF58	196	RER1 "Uncharacterized protein"	0.738	0.505	0.464	4e-19

TAIR|locus:2136373 ATRER1A "AT4G39220" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 68/120 (56%), Positives = 80/120 (66%)

Query:     7 WMLNLLMGFLSPQIDLE---YSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFL 54
             ++LNLL+GFLSP +D E    SDGP+LPT GSDEF+PF+R L E         +FCI FL
Sbjct:    71 YLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFL 130

Query:    55 MTFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDA 114
             MTFFS FDV VFWPI            MRRQI HMIKY+Y+PFSF KQ+Y G+  S S A
Sbjct:   131 MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGGRSSSGSRA 190

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2049354 RER1B "AT2G21600" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 65/117 (55%), Positives = 79/117 (67%)

Query:     7 WMLNLLMGFLSPQID--LEYSDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
             ++LNLL+GFLSP +D  LE SDG TLPT GSDEF+PF+R L E         +FCI FLM
Sbjct:    71 YLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLM 130

Query:    56 TFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSS 112
             TFFS FDV VFWPI            MRRQI HMIK++Y+PFS  KQ+Y G+  S++
Sbjct:   131 TFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRKSSAN 187

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2058583 ATRER1C1 "AT2G23310" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 63/122 (51%), Positives = 78/122 (63%)

Query:     4 INHWMLNLLMGFLSPQIDLEYS--DGPTLPTHGSDEFRPFVRCLLE---------SFCIG 52
             I  ++LNL++ FLSPQ D E S   G +LPT  SDE+RPFVR L E         +F IG
Sbjct:    90 IGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIG 149

Query:    53 FLMTFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSS 112
             F+MTFF  FDV VFWPI            MR+QI HMIKYRYVPFSF K++Y GK P+ +
Sbjct:   150 FMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPAPT 208

Query:   113 DA 114
             ++
Sbjct:   209 ES 210

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=NAS

GO:0045185 "maintenance of protein location" evidence=IGI

MGI|MGI:1915080 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 53/112 (47%), Positives = 68/112 (60%)

Query:     9 LNLLMGFLSPQID---LEYSD-GPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
             LNL + FLSP++D   +E SD GP+LPT  ++EFRPF+R L E            +  + 
Sbjct:    76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMIC 135

Query:    56 TFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGK 107
             TFF AF+V VFWPI            M+RQI HMIKYRY+PF+  K+RY GK
Sbjct:   136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=ISO

RGD|1306324 Rer1 "RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 53/112 (47%), Positives = 68/112 (60%)

Query:     9 LNLLMGFLSPQID---LEYSD-GPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
             LNL + FLSP++D   +E SD GP+LPT  ++EFRPF+R L E            +  + 
Sbjct:    76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMIC 135

Query:    56 TFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGK 107
             TFF AF+V VFWPI            M+RQI HMIKYRY+PF+  K+RY GK
Sbjct:   136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA;ISO

GO:0030173 "integral to Golgi membrane" evidence=IEA;ISO

UNIPROTKB|O15258 RER1 "Protein RER1" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 53/112 (47%), Positives = 68/112 (60%)

Query:     9 LNLLMGFLSPQID---LEYSD-GPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
             LNL + FLSP++D   +E SD GP+LPT  ++EFRPF+R L E            +  + 
Sbjct:    76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVC 135

Query:    56 TFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGK 107
             TFF AF+V VFWPI            M+RQI HMIKYRY+PF+  K+RY GK
Sbjct:   136 TFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187

GO:0030173 "integral to Golgi membrane" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ZHM5 RER1 "Protein RER1" [Gallus gallus (taxid:9031)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 55/112 (49%), Positives = 70/112 (62%)

Query:     9 LNLLMGFLSPQID---LEYSD-GPTLPTHGSDEFRPFVRCLLE-----SFCIGFLM---- 55
             LNL + FLSP++D   +E SD GP+LPT  ++EFRPF+R L E     S   G L+    
Sbjct:    76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMAC 135

Query:    56 TFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGK 107
             TFF AF+V VFWPI            M+RQI HMIKYRY+PF+  K++Y GK
Sbjct:   136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKYKGK 187

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

UNIPROTKB|I3LJC8 LOC100736849 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 55/121 (45%), Positives = 71/121 (58%)

Query:     9 LNLLMGFLSPQID---LEYSD-GPTLPTHGSDEFRPFVRCLLE-SF--------CIGFLM 55
             LNL + FLSP++D   +E SD GP+LPT  ++EFRPF+R L E  F         +  + 
Sbjct:    76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGVLVAMVC 135

Query:    56 TFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGKMPSSSDAM 115
             TFF AF+V VFWPI            M+RQI HMIKYRY+PF+  K+ Y GK  S+    
Sbjct:   136 TFFEAFNVPVFWPILVMYFVMLFCITMKRQIKHMIKYRYIPFTHGKRTYRGKEDSAKTLT 195

Query:   116 S 116
             S
Sbjct:   196 S 196

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A5PJ65 RER1 "Protein RER1" [Bos taurus (taxid:9913)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 52/112 (46%), Positives = 67/112 (59%)

Query:     9 LNLLMGFLSPQID---LEYSD-GPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
             LNL + FLSP++D   +E SD GP+LPT  ++EFRPF+R L E            +  + 
Sbjct:    76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVC 135

Query:    56 TFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGK 107
             TFF AF+V VFWPI            M+RQI HMIKYRY+PF+  K+ Y GK
Sbjct:   136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGK 187

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA

UNIPROTKB|F6XF58 RER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 52/112 (46%), Positives = 66/112 (58%)

Query:     9 LNLLMGFLSPQID---LEYSD-GPTLPTHGSDEFRPFVRCLLE---------SFCIGFLM 55
             LNL + FLSP++D   +E SD GP+LPT  ++EFRPF+R L E            +    
Sbjct:    76 LNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMAC 135

Query:    56 TFFSAFDVHVFWPIXXXXXXXXXXXXMRRQIMHMIKYRYVPFSFVKQRYDGK 107
             TFF AF+V VFWPI            M+RQI HMIKYRY+PF+  K+ Y GK
Sbjct:   136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGK 187

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
pfam03248	175	pfam03248, Rer1, Rer1 family	3e-43
COG5249	180	COG5249, RER1, Golgi protein involved in Golgi-to-	2e-22

>gnl|CDD|202582 pfam03248, Rer1, Rer1 family

 Score =  139 bits (353), Expect = 3e-43
 Identities = 57/115 (49%), Positives = 68/115 (59%), Gaps = 16/115 (13%)

Query: 9   LNLLMGFLSPQIDLEYSD-------GPTLPTHGSDEFRPFVRCLLE---------SFCIG 52
           LNL + FL+P+ D            GP+LPT   DEFRPF+R L E         +  I 
Sbjct: 61  LNLFLAFLTPKFDPSLEQEDEDVEEGPSLPTSNDDEFRPFIRRLPEFKFWYSATRATVIA 120

Query: 53  FLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK 107
              TFFS FD+ VFWPILL Y++ LF LTMRRQI HMIKY+YVPF   K +Y  K
Sbjct: 121 LFCTFFSFFDIPVFWPILLMYFIILFFLTMRRQIKHMIKYKYVPFDIGKPKYGRK 175

RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Length = 175

>gnl|CDD|227574 COG5249, RER1, Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

 Score = 86.8 bits (215), Expect = 2e-22
 Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 13/111 (11%)

Query: 7   WMLNLLMGFLSPQIDLEYS----DGPTLPTHGSDEFRPFVRCLLE---------SFCIGF 53
           ++LN  + FL+P+ D+ +     D         +EFRPF+R L E         +  +  
Sbjct: 67  YLLNAFLAFLTPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMAL 126

Query: 54  LMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRY 104
           + ++F  FDV VFWPIL+ Y++ L   T RRQI HM KYRY PF   K++Y
Sbjct: 127 IGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNPFDIGKKKY 177

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG1688	188	consensus Golgi proteins involved in ER retention	100.0
PF03248	176	Rer1: Rer1 family; InterPro: IPR004932 RER1 family	100.0
COG5249	180	RER1 Golgi protein involved in Golgi-to-ER retriev	100.0
PF09973	233	DUF2208: Predicted membrane protein (DUF2208); Int	89.15
PF13260	54	DUF4051: Protein of unknown function (DUF4051)	82.58

>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-60  Score=379.59  Aligned_cols=108  Identities=56%  Similarity=1.041  Sum_probs=105.2

Q ss_pred             cchhHHHHHHHHhhcCCCCCCCC---CCCCCCCCCCCCCCCchhhhhhh---------HHHHHHHhhhhcccccchhhHH
Q 048175            2 NKINHWMLNLLMGFLSPQIDLEY---SDGPTLPTHGSDEFRPFVRCLLE---------SFCIGFLMTFFSAFDVHVFWPI   69 (134)
Q Consensus         2 y~LgIYlLnlfi~FLtPk~Dp~~---~dg~~LP~~~~dEFrPFiRRLPE---------a~~ia~~~TfF~~fDIPVFWPI   69 (134)
                      ||||||+|||||||||||+|||+   +||+.||+++|||||||||||||         |+++|++||||++|||||||||
T Consensus        68 Y~LgIYlLNlfiaFLtPk~Dp~~~~~~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPI  147 (188)
T KOG1688|consen   68 YALGIYLLNLFIAFLTPKVDPELQDADDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPI  147 (188)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchhhcccCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence            89999999999999999999996   68999999999999999999999         9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccCCCCC
Q 048175           70 LLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGKMP  109 (134)
Q Consensus        70 Ll~YFi~Lf~lTMrrqI~HMIKYkYvPf~~gK~~Y~~~~~  109 (134)
                      |++||++||++||||||+|||||||+||+.||++|+++++
T Consensus       148 Ll~Y~i~lf~ltmrRqI~HMiKyrY~Pf~~gK~~~~~~~~  187 (188)
T KOG1688|consen  148 LLMYFIVLFFLTMRRQIAHMIKYRYIPFDIGKKKYGSHSD  187 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccCchhhhcccc
Confidence            9999999999999999999999999999999999988765

>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment

Probab=100.00  E-value=2.1e-60  Score=375.55  Aligned_cols=107  Identities=54%  Similarity=1.041  Sum_probs=102.8

Q ss_pred             CcchhHHHHHHHHhhcCCCCCCCC-------CCCCCCCC--CCCCCCCchhhhhhh---------HHHHHHHhhhhcccc
Q 048175            1 ENKINHWMLNLLMGFLSPQIDLEY-------SDGPTLPT--HGSDEFRPFVRCLLE---------SFCIGFLMTFFSAFD   62 (134)
Q Consensus         1 ~y~LgIYlLnlfi~FLtPk~Dp~~-------~dg~~LP~--~~~dEFrPFiRRLPE---------a~~ia~~~TfF~~fD   62 (134)
                      .||||||+||+||+|||||+||++       |||+.||+  ++|||||||+|||||         |+++|++||||++||
T Consensus        52 tY~LgIylLnlfi~FltP~~Dp~l~~~~~~~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fd  131 (176)
T PF03248_consen   52 TYALGIYLLNLFIAFLTPKFDPELEQDEEDEEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFD  131 (176)
T ss_pred             hHHHHHHHHHHHHHHhCCcCccccccccccccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            389999999999999999999986       35779999  899999999999999         999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccCCC
Q 048175           63 VHVFWPILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDGK  107 (134)
Q Consensus        63 IPVFWPILl~YFi~Lf~lTMrrqI~HMIKYkYvPf~~gK~~Y~~~  107 (134)
                      ||||||||++|||+||++||||||+|||||||+|||+||++|++|
T Consensus       132 iPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy~Y~Pf~~gK~~y~~~  176 (176)
T PF03248_consen  132 IPVFWPILLVYFIVLFVLTMKRQIKHMIKYRYVPFDFGKKKYGRK  176 (176)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhccCC
Confidence            999999999999999999999999999999999999999999986

The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane

>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.4e-51  Score=324.74  Aligned_cols=105  Identities=40%  Similarity=0.825  Sum_probs=98.3

Q ss_pred             cchhHHHHHHHHhhcCCCCCCCC---CCCCCCCC-CCCCCCCchhhhhhh---------HHHHHHHhhhhcccccchhhH
Q 048175            2 NKINHWMLNLLMGFLSPQIDLEY---SDGPTLPT-HGSDEFRPFVRCLLE---------SFCIGFLMTFFSAFDVHVFWP   68 (134)
Q Consensus         2 y~LgIYlLnlfi~FLtPk~Dp~~---~dg~~LP~-~~~dEFrPFiRRLPE---------a~~ia~~~TfF~~fDIPVFWP   68 (134)
                      |+||||+||+|++|||||+||+.   +|+..+|. +.|||||||||||||         |+++|++.|+|++||||||||
T Consensus        62 Y~LgiyLLn~flaFLTPKfdms~eq~e~d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwP  141 (180)
T COG5249          62 YCLGIYLLNAFLAFLTPKFDMSFEQIEDDDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWP  141 (180)
T ss_pred             HHHHHHHHHHHHHHhCCCCcccHhhhccccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhH
Confidence            89999999999999999999997   34444554 479999999999999         999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccCC
Q 048175           69 ILLFYWLTLFTLTMRRQIMHMIKYRYVPFSFVKQRYDG  106 (134)
Q Consensus        69 ILl~YFi~Lf~lTMrrqI~HMIKYkYvPf~~gK~~Y~~  106 (134)
                      |||+|||+|+..|||||||||+||||+|||.||++|++
T Consensus       142 ILvvYfi~l~f~t~rRqIqHM~KYrY~PfdigKkky~s  179 (180)
T COG5249         142 ILVVYFIFLVFYTARRQIQHMKKYRYNPFDIGKKKYKS  179 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhcc
Confidence            99999999999999999999999999999999999975

>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues

Probab=89.15  E-value=0.6  Score=38.96  Aligned_cols=38  Identities=13%  Similarity=0.561  Sum_probs=32.6

Q ss_pred             HHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048175           49 FCIGFLMTFFSAFDVHVFWPILLFYWLTLFTLTMRRQIMHMI   90 (134)
Q Consensus        49 ~~ia~~~TfF~~fDIPVFWPILl~YFi~Lf~lTMrrqI~HMI   90 (134)
                      ++.|++.++++.-    ||++.+.||++.+++||.-.++++-
T Consensus        12 l~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~r   49 (233)
T PF09973_consen   12 LLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSYR   49 (233)
T ss_pred             HHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            5678888988754    6799999999999999998888876

However, these proteins are predicted to contain three or more transmembrane segments.

>PF13260 DUF4051: Protein of unknown function (DUF4051)

Probab=82.58  E-value=1.8  Score=29.38  Aligned_cols=22  Identities=32%  Similarity=0.786  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 048175           71 LFYWLTLFTLTMRRQIMHMIKY   92 (134)
Q Consensus        71 l~YFi~Lf~lTMrrqI~HMIKY   92 (134)
                      .-|||+|-++..-...-||.+|
T Consensus         4 awywivli~lv~~gy~~hmkry   25 (54)
T PF13260_consen    4 AWYWIVLIVLVVVGYFCHMKRY   25 (54)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3588888888888888899887

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00