Citrus Sinensis ID: 048181

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MAATLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL
Secondary Structure (PSIPRED)
ccEEEHHHHHHccccccccccccccEEEcccccccccEEEEEccccEEEEEEcccEEEEEEccccEEEEEEEccccccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEccccEEEEEEccccccEEccccccEEEccccEEEEEccccccccccEEEEEEEcccccEEEEEEcccccEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEcccccccEEEEcccccccccEEcccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHHHcccccccccccHHccccccccccccccEEEcccccccEEEccccEEEEEEcccccEEEEEEccccccccccccccccccccccccccEEEccccccEEEEEcHccEEEEcccccEEEEEEcccccccEEEccccEEcccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccHHHEEEEEEcccccccEEEEcccccccccEEcccccccEEEEEEccccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
MAATLSLFVFVFslprmvfsiptftkilfppkafggesiafepvggafytgvadgrilkyqapdgftdfafttptrskavcdgttnldlgpicRRTFGLALHYATRQLYIADAYSgllvvgpngrlatqlatgaegqafhfldgldvdqgtgvvyftdasgvydfRTIVKLNItndstgrllsynprssqVTVLLRNltgpagvaiSVDSSFLLVSeftgnrtlkywlrgpransfdiinfqakphnikrnpgllQTFWEAAIItrqpagtpvpigqrISAFGAVLDTISFeaqysttpisevqpfggal
Flexible Loop (DISEMBL)
MAATLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNitndstgrllsynprSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEaqysttpisevqpfggal
Low Complexity Region (SEG)
MAATLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL
Disordered region (IsUnstruct)
***TLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYS**************
Disordered Region (DISOPRED)
MAATLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGG*L
Disordered Region (DISEMBL)
MAATLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL
Disordered Region (DISPRO)
MAATLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
P68175	344	Strictosidine synthase OS	N/A	no	0.925	0.834	0.376	2e-54
P68174	342	Strictosidine synthase (F	N/A	no	0.925	0.839	0.376	2e-54
P94111	335	Strictosidine synthase 1	yes	no	0.919	0.850	0.413	4e-53
P18417	352	Strictosidine synthase OS	N/A	no	0.925	0.815	0.374	2e-52
P92976	329	Strictosidine synthase 3	no	no	0.912	0.860	0.410	1e-51
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.687	0.512	0.326	1e-19
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.677	0.504	0.324	7e-19
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.738	0.551	0.309	1e-18
Q803F5	415	Adipocyte plasma membrane	no	no	0.687	0.513	0.310	2e-18
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.738	0.609	0.301	3e-18

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/292 (37%), Positives = 165/292 (56%), Gaps = 5/292 (1%)

Query: 22  PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAV 80
           P   +IL    ++   S  F+     FYT V DGR++KY+ P+ GF DFA+ +P  +KA 
Sbjct: 29  PILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAF 88

Query: 81  CDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFH 140
           C+ +T+ +  P+C RT+ ++ +    QLYI D Y  L VVG  G  ATQLAT  +G  F 
Sbjct: 89  CENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFK 148

Query: 141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG 200
           +L  + VDQ TG+VYFTD S +YD R + ++  T+D TGRL+ Y+P + + T+LL+ L  
Sbjct: 149 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHV 208

Query: 201 PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFW- 259
           P G  +S DSSF+LV+EF  ++ +KYWL GP+  + +++     P NIKRN      FW 
Sbjct: 209 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD--GHFWV 266

Query: 260 -EAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
             +  +     G   P G +   FG +L+ I     ++     ++Q   G L
Sbjct: 267 SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL 318

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.
Rauvolfia serpentina (taxid: 4060)
EC: 4EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/292 (37%), Positives = 165/292 (56%), Gaps = 5/292 (1%)

Query: 22  PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAV 80
           P   +IL    ++   S  F+     FYT V DGR++KY+ P+ GF DFA+ +P  +KA 
Sbjct: 27  PILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAF 86

Query: 81  CDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFH 140
           C+ +T+ +  P+C RT+ ++ +    QLYI D Y  L VVG  G  ATQLAT  +G  F 
Sbjct: 87  CENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFK 146

Query: 141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG 200
           +L  + VDQ TG+VYFTD S +YD R + ++  T+D TGRL+ Y+P + + T+LL+ L  
Sbjct: 147 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHV 206

Query: 201 PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFW- 259
           P G  +S DSSF+LV+EF  ++ +KYWL GP+  + +++     P NIKRN      FW 
Sbjct: 207 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD--GHFWV 264

Query: 260 -EAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
             +  +     G   P G +   FG +L+ I     ++     ++Q   G L
Sbjct: 265 SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL 316

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score =  208 bits (529), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 120/290 (41%), Positives = 171/290 (58%), Gaps = 5/290 (1%)

Query: 23  TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCD 82
           +F K+  P    G E+ AF+  G  FYTGV+ G+ILKY    G+ DFA  T + + + CD
Sbjct: 26  SFQKLPVPETRSGPEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCD 85

Query: 83  GTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFL 142
           GT    L   C R  G+A +  T  LY+ADA  GL V+ P G LAT++    +G+ F FL
Sbjct: 86  GTIGTALAGRCGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFL 145

Query: 143 DGLDVDQGTGVVYFTDASGVYD-FRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGP 201
           DGLDVD  TGVVYFT  S  +   + ++ L +  D+TG+L  Y+P +  VTVL+  L+G 
Sbjct: 146 DGLDVDPTTGVVYFTSFSSRFSPIQVLIALGL-KDATGKLYKYDPSTKVVTVLMEGLSGS 204

Query: 202 AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA-NSFDIINFQAKPHNIKRNPGLLQTFWE 260
           AG A+S D SF+LVS+FT +   +YW++GP+A +S D  N  + P NIKR  G    FW 
Sbjct: 205 AGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKR-IGSTGNFWV 263

Query: 261 AAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
           A+++ +    T  P   ++++ G VL TI  + ++  T +SEV  F G L
Sbjct: 264 ASVVNKIIVPTN-PSAVKVNSNGEVLQTIPLKDKFGDTLLSEVNEFEGNL 312

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/294 (37%), Positives = 160/294 (54%), Gaps = 7/294 (2%)

Query: 22  PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAV 80
           P   KI     ++   +  F+     FYT V DGR++KY+ P+ GFTDFA+ +P  +KA 
Sbjct: 33  PILKKIFIESPSYAPNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYASPFWNKAF 92

Query: 81  CDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFH 140
           C+ +T+ +  P+C RT+ ++  Y   Q+YI D +  L VVG  G  ATQLAT  +G  F 
Sbjct: 93  CENSTDPEKRPLCGRTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFK 152

Query: 141 FLDGLDVDQGTGVVYFTDASGVYDF--RTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL 198
           +L  + VDQ TG+VYFTD S ++D     + ++  T+D TGRL+ Y+P + + T+LL+ L
Sbjct: 153 WLYAVTVDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKEL 212

Query: 199 TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTF 258
             P G  IS D SF++V+EF  NR +KYWL GP+  S + +     P NIKRN      F
Sbjct: 213 HVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAEFLVTIPNPGNIKRNSD--GHF 270

Query: 259 W--EAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
           W   +  +     G  V  G +   FG +L  I     Y      ++Q   G L
Sbjct: 271 WVSSSEELDGGQHGRVVSRGIKFDGFGNILQVIPLPPPYEGEHFEQIQEHDGLL 324

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Catharanthus roseus (taxid: 4058)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/292 (41%), Positives = 165/292 (56%), Gaps = 9/292 (3%)

Query: 23  TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCD 82
           +F K+  P    G E+ AF+  G  FYTGV  G+ILKY    G+ DFA  T +   ++CD
Sbjct: 28  SFQKLPVPGNRTGPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCD 87

Query: 83  G---TTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAF 139
           G   TTN++    C R  G+A +  T  LY+ADA  GL V+   G LA ++A    G+ F
Sbjct: 88  GALGTTNVEK---CGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPF 144

Query: 140 HFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLT 199
            FLDGLDVD  TGVVYFT  S  +  R ++K   T DSTG+   Y+P    VTVL+  L+
Sbjct: 145 LFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLS 204

Query: 200 GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA-NSFDIINFQAKPHNIKRNPGLLQTF 258
           G AG A+S D SF+LV +FT +   +YW++G +A  S D  N  + P NIKR  G    F
Sbjct: 205 GSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKR-IGSTGNF 263

Query: 259 WEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
           W A+++     G   P   ++S+ G VL TI  + ++  T +SEV  + G L
Sbjct: 264 WVASVV-NSATGPTNPSAVKVSSAGKVLQTIPLKDKFGDTLVSEVNEYKGQL 314

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 17/230 (7%)

Query: 28  LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTR-SKAVCDGTTN 86
           LF  +  G ESIA    G   YTG ADG+I+K +        + T   R  K  CDG+  
Sbjct: 93  LFEDQLVGPESIA--NFGDLIYTGTADGKIVKIEGK------SITVIARLGKPPCDGSRE 144

Query: 87  LDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAE---GQAFHFLD 143
            +  P C R  G+ +      L++ADAY GL  V P     T L +  +   G+   F++
Sbjct: 145 QE--PSCGRPLGIRVG-PNGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVN 201

Query: 144 GLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG 203
            LDV Q    VYFTD+S  +  R  + L +   + GR+L Y+  + +VTVL+ NL    G
Sbjct: 202 DLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANG 261

Query: 204 VAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD--IINFQAKPHNIKRN 251
           + +  D   +LV+E T  R  +  + G      D  + N    P NI+R+
Sbjct: 262 IQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRS 311

Salmo salar (taxid: 8030)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 108/228 (47%), Gaps = 18/228 (7%)

Query: 28  LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTT-PTRSKAVCDGTTN 86
           LF  +  G ESIA   +G   +TG ADGR++K +  +  T   F + P +++        
Sbjct: 94  LFENQLVGPESIAH--IGDVMFTGTADGRVVKLENGEIETIARFGSGPCKTR-------- 143

Query: 87  LDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQL---ATGAEGQAFHFLD 143
            D  P+C R  G+        L++ADAY GL  V P  R    L    T  EG+   F++
Sbjct: 144 -DDEPVCGRPLGIRAG-PNGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVN 201

Query: 144 GLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG 203
            L V Q    +YFTD+S  +  R  + L +     GRLL Y+  + +V VLL  L  P G
Sbjct: 202 DLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNG 261

Query: 204 VAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII--NFQAKPHNIK 249
           V +S    F+LV+E T  R  + ++ G      D+   N    P NI+
Sbjct: 262 VQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIR 309

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 113/249 (45%), Gaps = 20/249 (8%)

Query: 28  LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTT-PTRSKAVCDGTTN 86
           LF  +  G ESI    +G   +TG ADGR++K +  +  T   F + P +++        
Sbjct: 93  LFENQLSGPESIV--NIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTR-------- 142

Query: 87  LDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQL---ATGAEGQAFHFLD 143
            D  P C R  G+        L++ DAY GL  V P  R    L    T  EG+   F++
Sbjct: 143 -DDEPTCGRPLGIRAG-PNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVN 200

Query: 144 GLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG 203
            L V +    +YFTD+S  +  R  + L +     GRLL Y+  + +V VLL  L  P G
Sbjct: 201 DLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNG 260

Query: 204 VAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII--NFQAKPHNIKRNPGLLQTFWEA 261
           V +S +  F+LV+E T  R  + ++ G      D+   N    P NI+  P     +W A
Sbjct: 261 VQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIR--PSSSGGYWVA 318

Query: 262 AIITRQPAG 270
           A   R   G
Sbjct: 319 AATIRANPG 327

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 16/229 (6%)

Query: 28  LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNL 87
           LF  +  G ES+A   +G  FYTG ADG+I+K +  +          T  K  C    + 
Sbjct: 93  LFEERLVGPESLA--NIGDVFYTGTADGKIVKIEGRN-----IHVLATIGKPPCGSREHE 145

Query: 88  DLGPICRRTFGLALHYATRQLYIADAYSGLLVVGP-NGRLATQLATGAE--GQAFHFLDG 144
                C R  G+ +      L++ADAY GL  V P  G + + ++T     G+   F++ 
Sbjct: 146 H---TCGRPLGIRVG-PNGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVND 201

Query: 145 LDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGV 204
           LDV Q    VYFTD+S  +  R  + L +   + GR+L Y+  + +V V++ NL  P G+
Sbjct: 202 LDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGI 261

Query: 205 AISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD--IINFQAKPHNIKRN 251
            +  D   +LV+E T  R  +  + G      D  I N    P NI+R+
Sbjct: 262 QLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRS 310

Danio rerio (taxid: 7955)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 113/249 (45%), Gaps = 20/249 (8%)

Query: 28  LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTT-PTRSKAVCDGTTN 86
           LF  +  G ESI    +G   +TG ADGR++K +  +  T   F + P +++        
Sbjct: 54  LFENQLNGPESIV--NIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTR-------- 103

Query: 87  LDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQL---ATGAEGQAFHFLD 143
            D  P C R  G+ +      L++ DAY GL  V P  R    L    T  EG+   F++
Sbjct: 104 -DDEPTCGRPLGIRVG-PNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVN 161

Query: 144 GLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG 203
            L + +    +YFTD+S  +  R  + L +     GRLL Y+  + +V VLL  L  P G
Sbjct: 162 DLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNG 221

Query: 204 VAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII--NFQAKPHNIKRNPGLLQTFWEA 261
           V +S +  F+LV+E    R  + ++ G      D+   N    P NI+  P     +W A
Sbjct: 222 VQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIR--PSSSGGYWVA 279

Query: 262 AIITRQPAG 270
           A   R   G
Sbjct: 280 AATIRANPG 288

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
297734130	693	unnamed protein product [Vitis vinifera]	0.974	0.435	0.564	5e-87
359491389	343	PREDICTED: strictosidine synthase 1-like	0.964	0.871	0.567	7e-87
224133232	335	predicted protein [Populus trichocarpa]	0.983	0.910	0.541	6e-80
147866837	342	hypothetical protein VITISV_013355 [Viti	0.980	0.888	0.504	3e-75
225455774	342	PREDICTED: strictosidine synthase 3-like	0.980	0.888	0.504	3e-75
317106655	336	JHL10I11.5 [Jatropha curcas]	0.990	0.913	0.485	6e-75
297734131	1075	unnamed protein product [Vitis vinifera]	0.961	0.277	0.507	2e-74
147772030	300	hypothetical protein VITISV_044019 [Viti	0.774	0.8	0.598	6e-72
147805897	326	hypothetical protein VITISV_000854 [Viti	0.945	0.898	0.490	7e-71
147866838	600	hypothetical protein VITISV_013356 [Viti	0.967	0.5	0.453	4e-63

>gi|297734130|emb|CBI15377.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 174/308 (56%), Positives = 220/308 (71%), Gaps = 6/308 (1%)

Query: 3   ATLSLFVFVF-SLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQ 61
           A +S+F+ +F S+P  V ++  FT++  PP   G E++AF+ +GG  YTGV+DGR+LKY 
Sbjct: 14  AMISIFLLLFFSVPHTVLTLSFFTQLQLPPNVTGPEALAFDRLGGGPYTGVSDGRVLKYG 73

Query: 62  APD-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVV 120
            P  GFTDFA+TTPTRSKAVCDGTT+ + GP C R  G+  +  T QLYIADAYSGLLVV
Sbjct: 74  GPSAGFTDFAYTTPTRSKAVCDGTTDPNSGPTCGRPLGVGFNNLTGQLYIADAYSGLLVV 133

Query: 121 GPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR 180
           G NG LAT +AT AEG  F FL+GLDVDQ TG VYFTDAS VY+ R I +    ND++GR
Sbjct: 134 GSNGGLATPVATTAEGVPFRFLNGLDVDQLTGNVYFTDASSVYELRDITQGVENNDASGR 193

Query: 181 LLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I 239
           LL Y+P + QVTVL+R L+GPAG A+S D SF+LVSEF  NRT K+WLRGP+AN+ ++  
Sbjct: 194 LLKYDPSTKQVTVLIRGLSGPAGAAVSRDGSFVLVSEFIANRTQKFWLRGPKANTSELFF 253

Query: 240 NFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTP 299
            FQ +P NIK +  +  TFW A  I +    T VP GQR+ A G VL T++FEA+Y +T 
Sbjct: 254 TFQGRPDNIKTS--ITDTFWVAVNIGKS-VPTTVPTGQRMDAHGNVLQTVNFEAEYGSTM 310

Query: 300 ISEVQPFG 307
           ISEVQ  G
Sbjct: 311 ISEVQGRG 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491389|ref|XP_002274134.2| PREDICTED: strictosidine synthase 1-like [Vitis vinifera]

 Score =  326 bits (836), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 173/305 (56%), Positives = 219/305 (71%), Gaps = 6/305 (1%)

Query: 3   ATLSLFVFVF-SLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQ 61
           A +S+F+ +F S+P  V ++  FT++  PP   G E++AF+ +GG  YTGV+DGR+LKY 
Sbjct: 14  AMISIFLLLFFSVPHTVLTLSFFTQLQLPPNVTGPEALAFDRLGGGPYTGVSDGRVLKYG 73

Query: 62  APD-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVV 120
            P  GFTDFA+TTPTRSKAVCDGTT+ + GP C R  G+  +  T QLYIADAYSGLLVV
Sbjct: 74  GPSAGFTDFAYTTPTRSKAVCDGTTDPNSGPTCGRPLGVGFNNLTGQLYIADAYSGLLVV 133

Query: 121 GPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR 180
           G NG LAT +AT AEG  F FL+GLDVDQ TG VYFTDAS VY+ R I +    ND++GR
Sbjct: 134 GSNGGLATPVATTAEGVPFRFLNGLDVDQLTGNVYFTDASSVYELRDITQGVENNDASGR 193

Query: 181 LLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I 239
           LL Y+P + QVTVL+R L+GPAG A+S D SF+LVSEF  NRT K+WLRGP+AN+ ++  
Sbjct: 194 LLKYDPSTKQVTVLIRGLSGPAGAAVSRDGSFVLVSEFIANRTQKFWLRGPKANTSELFF 253

Query: 240 NFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTP 299
            FQ +P NIK +  +  TFW A  I +    T VP GQR+ A G VL T++FEA+Y +T 
Sbjct: 254 TFQGRPDNIKTS--ITDTFWVAVNIGKS-VPTTVPTGQRMDAHGNVLQTVNFEAEYGSTM 310

Query: 300 ISEVQ 304
           ISEVQ
Sbjct: 311 ISEVQ 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133232|ref|XP_002321516.1| predicted protein [Populus trichocarpa] gi|222868512|gb|EEF05643.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 170/314 (54%), Positives = 206/314 (65%), Gaps = 9/314 (2%)

Query: 1   MAATLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKY 60
           M + LS+FVF F  P  V S  +F +I  PP  FG ES+AFE  GGAFYTGV DGR+L+Y
Sbjct: 12  MVSILSIFVFCF--PSTVLS-ESFRQIFLPPTGFGPESLAFESPGGAFYTGVNDGRVLRY 68

Query: 61  QAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLV 119
           Q P G +T FA T+P R+ A+CDGTT+ D GPIC R  GLA   +T+ LYIADAY GL V
Sbjct: 69  QPPTGSWTSFAITSPNRTIALCDGTTDPDKGPICGRPLGLAYSPSTKLLYIADAYYGLFV 128

Query: 120 VGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG 179
              NGRLA Q+AT AEGQ F   + LD+D  TG +YFTDAS VYD R   K  + NDSTG
Sbjct: 129 ADSNGRLAKQIATSAEGQRFVACNALDIDPITGNIYFTDASAVYDLRNSSKALLANDSTG 188

Query: 180 RLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII 239
           RL+ Y+ R +QVTVLLRNL+   GVA+S D  F+LVSEF GNR  +YWL G  A + DI 
Sbjct: 189 RLMKYDVRKNQVTVLLRNLSVAVGVAVSKDGGFVLVSEFVGNRIRRYWLTGRDAGTSDIF 248

Query: 240 --NFQ-AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYS 296
             N    +P+NIKR    L  F  AA   RQ + T VPI  R+   G + +T+S EAQY 
Sbjct: 249 LSNLNIVRPNNIKRTS--LGDFRIAAATVRQDSQTLVPIRVRVDEHGRISETVSLEAQYG 306

Query: 297 TTPISEVQPFGGAL 310
           +TPISEVQ  G +L
Sbjct: 307 STPISEVQQSGLSL 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866837|emb|CAN78855.1| hypothetical protein VITISV_013355 [Vitis vinifera]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 160/317 (50%), Positives = 205/317 (64%), Gaps = 13/317 (4%)

Query: 5   LSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD 64
           LS+F+     P  V S+ +FT++  PP   G  S+AF+   G  Y GV DGRI++Y   D
Sbjct: 13  LSIFILFLCFPAKVCSLSSFTQLQLPPNVTGPVSLAFDLTVGGPYAGVNDGRIIRYGGTD 72

Query: 65  -GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN 123
            GFTDFAF TPTRSKAVCDGTT+ D GP C R  GL+ +    Q+YIADAYSGL V G N
Sbjct: 73  VGFTDFAFCTPTRSKAVCDGTTDPDSGPTCGRPLGLSFNNLRNQMYIADAYSGLFVAGTN 132

Query: 124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK-------LNITND 176
           GRLAT+LAT AEG  F FL+GLDVD  +G+VYFTD S     R I +          ++D
Sbjct: 133 GRLATKLATSAEGVPFCFLNGLDVDPLSGLVYFTDFSTTIQLRNISRALASGNTTQFSSD 192

Query: 177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF 236
           +TGRLL Y+P +  VTVLLR L+G AG A+S D  F+LVSEF  NR LK+WLRGP+A++ 
Sbjct: 193 ATGRLLRYDPETKNVTVLLRGLSGAAGTAVSNDGMFVLVSEFNANRILKFWLRGPKASTA 252

Query: 237 D-IINFQAKPHNIKRNPGLLQTFWEAAII-TRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294
           +  ++F+ +P NIKR       FW A  +   Q   T +  GQRIS +G +L+T+SF+ Q
Sbjct: 253 ETFVSFRGRPVNIKRTAS--GNFWVAVNVPNNQSPPTTILTGQRISYYGTILETVSFDDQ 310

Query: 295 Y-STTPISEVQPFGGAL 310
           Y  +T I+EVQ   GAL
Sbjct: 311 YGGSTLITEVQQHLGAL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455774|ref|XP_002274235.1| PREDICTED: strictosidine synthase 3-like [Vitis vinifera]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 160/317 (50%), Positives = 205/317 (64%), Gaps = 13/317 (4%)

Query: 5   LSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD 64
           LS+F+     P  V S+ +FT++  PP   G  S+AF+   G  Y GV DGRI++Y   D
Sbjct: 13  LSIFILFLCFPAKVCSLSSFTQLQLPPNVTGPVSLAFDLTVGGPYAGVNDGRIIRYGGTD 72

Query: 65  -GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN 123
            GFTDFAF TPTRSKAVCDGTT+ D GP C R  GL+ +    Q+YIADAYSGL V G N
Sbjct: 73  VGFTDFAFCTPTRSKAVCDGTTDPDSGPTCGRPLGLSFNNLRNQMYIADAYSGLFVAGTN 132

Query: 124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK-------LNITND 176
           GRLAT+LAT AEG  F FL+GLDVD  +G+VYFTD S     R I +          ++D
Sbjct: 133 GRLATKLATSAEGVPFCFLNGLDVDPLSGLVYFTDFSTTIQLRNISRALASGNTTQFSSD 192

Query: 177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF 236
           +TGRLL Y+P +  VTVLLR L+G AG A+S D  F+LVSEF  NR LK+WLRGP+A++ 
Sbjct: 193 ATGRLLRYDPETKNVTVLLRGLSGAAGTAVSNDGMFVLVSEFNANRILKFWLRGPKASTA 252

Query: 237 D-IINFQAKPHNIKRNPGLLQTFWEAAII-TRQPAGTPVPIGQRISAFGAVLDTISFEAQ 294
           +  ++F+ +P NIKR       FW A  +   Q   T +  GQRIS +G +L+T+SF+ Q
Sbjct: 253 ETFVSFRGRPVNIKRTAS--GNFWVAVNVPNNQSPPTTILTGQRISYYGTILETVSFDDQ 310

Query: 295 Y-STTPISEVQPFGGAL 310
           Y  +T I+EVQ   GAL
Sbjct: 311 YGGSTLITEVQQHLGAL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106655|dbj|BAJ53159.1| JHL10I11.5 [Jatropha curcas]

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 152/313 (48%), Positives = 197/313 (62%), Gaps = 6/313 (1%)

Query: 1   MAATLSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKY 60
           +A  +S+ V  F++P +  SI +FTK+  PP+  G E+ AF+  G   YTGV DGR LKY
Sbjct: 11  VAMLVSMLVLSFTIPSLAISISSFTKLPLPPQVMGPEAFAFDLQGQGPYTGVLDGRTLKY 70

Query: 61  QAPD-GFTDFAFTTPTRSKAVCDGTTNLD-LGPICRRTFGLALHYATRQLYIADAYSGLL 118
           Q P  GF D+AF +P RSKA CDG TN    G IC R  G+   Y T +LYIADA  GLL
Sbjct: 71  QGPSLGFLDYAFDSPNRSKAACDGNTNPSAFGGICGRPLGIGFQY-TGELYIADANLGLL 129

Query: 119 VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST 178
           V   NGRLA  +A+ AEGQ F FLDGLD+   T  V+ TDAS  ++F  + +    NDST
Sbjct: 130 VASTNGRLARAVASSAEGQPFKFLDGLDIYPLTKTVFLTDASSRFNFSELAQAVAANDST 189

Query: 179 GRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD- 237
           GR + Y P  +  TVLLRNL+ PAGVA+S+D SF+LV+E+  NR LKYWL+GP+AN+ + 
Sbjct: 190 GRFIKYEPNINTTTVLLRNLSAPAGVAVSLDGSFVLVTEYLANRVLKYWLKGPKANTSEA 249

Query: 238 IINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYST 297
           ++ FQ +P NIKRNP  L  FW A  +   P    VP   +I+  G +L +     QY+T
Sbjct: 250 LVTFQGRPDNIKRNP--LGDFWVAVNVQETPTAPIVPTAVKINYSGKILASFPLSDQYNT 307

Query: 298 TPISEVQPFGGAL 310
           T ISEV  + G L
Sbjct: 308 TTISEVNEYDGNL 320

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734131|emb|CBI15378.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/315 (50%), Positives = 207/315 (65%), Gaps = 17/315 (5%)

Query: 5    LSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD 64
            LS+F+     P  V S+ +FT++  PP   G  S+AF+   G  Y GV DGRI++Y   D
Sbjct: 754  LSIFILFLCFPAKVCSLSSFTQLQLPPNVTGPVSLAFDLTVGGPYAGVNDGRIIRYGGTD 813

Query: 65   -GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN 123
             GFTDFAF TPTRSKAVCDGTT+ D GP C R  GL+ +    Q+YIADAYSGL V G N
Sbjct: 814  VGFTDFAFCTPTRSKAVCDGTTDPDSGPTCGRPLGLSFNNLRNQMYIADAYSGLFVAGTN 873

Query: 124  GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN-----ITNDST 178
            GRLAT+LAT AEG  F FL+GLDVD  +G+VYFT      DF T ++L+      ++D+T
Sbjct: 874  GRLATKLATSAEGVPFCFLNGLDVDPLSGLVYFT------DFSTTIQLSGNTTQFSSDAT 927

Query: 179  GRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD- 237
            GRLL Y+P +  VTVLLR L+G AG A+S D  F+LVSEF  NR LK+WLRGP+A++ + 
Sbjct: 928  GRLLRYDPETKNVTVLLRGLSGAAGTAVSNDGMFVLVSEFNANRILKFWLRGPKASTAET 987

Query: 238  IINFQAKPHNIKRNPGLLQTFWEAAII-TRQPAGTPVPIGQRISAFGAVLDTISFEAQY- 295
             ++F+ +P NIKR       FW A  +   Q   T +  GQRIS +G +L+T+SF+ QY 
Sbjct: 988  FVSFRGRPVNIKRTAS--GNFWVAVNVPNNQSPPTTILTGQRISYYGTILETVSFDDQYG 1045

Query: 296  STTPISEVQPFGGAL 310
             +T I+EVQ   GAL
Sbjct: 1046 GSTLITEVQQHLGAL 1060

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772030|emb|CAN77943.1| hypothetical protein VITISV_044019 [Vitis vinifera]

 Score =  276 bits (707), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 146/244 (59%), Positives = 177/244 (72%), Gaps = 4/244 (1%)

Query: 65  GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNG 124
           GFTDFA+TTPTRSKAVCDGTT+ + GP C R  G+  +  T QLYIADAYSGLLVVG NG
Sbjct: 35  GFTDFAYTTPTRSKAVCDGTTDPNSGPTCGRPLGVGFNNLTGQLYIADAYSGLLVVGSNG 94

Query: 125 RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY 184
            LAT +AT AEG  F FL+GLDVDQ TG VYFTDAS VY+ R I +    ND++GRLL Y
Sbjct: 95  GLATPVATTAEGVPFRFLNGLDVDQLTGNVYFTDASSVYELRDITQGVENNDASGRLLKY 154

Query: 185 NPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQA 243
           +P + QVTVL+R L+GPAG A+S D SF+LVSEF  NRT K+WLRGP+AN+ ++   FQ 
Sbjct: 155 DPSTKQVTVLIRGLSGPAGAAVSRDGSFVLVSEFIANRTQKFWLRGPKANTSELFFTFQG 214

Query: 244 KPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEV 303
           +P NIK +  +  TFW A  I +    T VP GQR+ A G VL T++FEA+Y +T ISEV
Sbjct: 215 RPDNIKTS--ITDTFWVAVNIGKS-VPTTVPTGQRMDAHGNVLQTVNFEAEYGSTMISEV 271

Query: 304 QPFG 307
           Q  G
Sbjct: 272 QXRG 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805897|emb|CAN59852.1| hypothetical protein VITISV_000854 [Vitis vinifera]

 Score =  273 bits (698), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 150/306 (49%), Positives = 192/306 (62%), Gaps = 13/306 (4%)

Query: 13  SLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAF 71
           S P  + S   F K+  P       S AF+ +GG  YTGV DGRI KY  P  GFT+FAF
Sbjct: 10  SFPSTILSNRIFIKLPLPKNVTSPYSFAFDQLGGGPYTGVTDGRIFKYGGPKVGFTEFAF 69

Query: 72  TTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLA 131
           T P RSK VCDGT +++LGPIC R  GL   +++  LYIADAY GLL VG NG  ATQ A
Sbjct: 70  TAPNRSKEVCDGTRDINLGPICGRPLGLGYDHSSXXLYIADAYFGLLAVGSNGGPATQAA 129

Query: 132 TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK------LNITNDSTGRLLSYN 185
           T AEG  F FL GLDVD  TG V  TD S  Y+ R I +        + +D+TGRLL Y+
Sbjct: 130 TSAEGVPFRFLSGLDVDPVTGTVXITDFSTEYELRDIRQALVSGNATVLSDTTGRLLKYD 189

Query: 186 PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAK 244
           PR+SQVTVLLRNL+G    A+S D SF+LV+EF  NR  K+WL G +A++ +I +  + +
Sbjct: 190 PRTSQVTVLLRNLSGAVXTALSTDRSFILVTEFNANRIQKFWLEGTKASTAEILVGLEGR 249

Query: 245 PHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQ 304
           P NI+     L++FW A  I   P  T VP  QRI  +G +L++++F AQY +  +SEVQ
Sbjct: 250 PTNIRTT---LESFWVAVSIQSTP--TTVPTAQRIDPYGNILESLNFAAQYGSNLLSEVQ 304

Query: 305 PFGGAL 310
            + GAL
Sbjct: 305 EYHGAL 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866838|emb|CAN78856.1| hypothetical protein VITISV_013356 [Vitis vinifera]

 Score =  248 bits (632), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 141/311 (45%), Positives = 185/311 (59%), Gaps = 11/311 (3%)

Query: 9   VFVFSLPRM---VFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD- 64
           +++ SLP     V     F K+  P    G ES+AF+  G   YTGV+DGR+LKYQ P  
Sbjct: 277 LYIGSLPLHFVGVLPFTLFNKLQLPSSITGPESLAFDLKGEGPYTGVSDGRVLKYQGPXV 336

Query: 65  GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNG 124
           GFTDFA T+P R++ +CDG+ +  L   C R  GL  +Y T  LY+ DAY GL+VVG +G
Sbjct: 337 GFTDFAVTSPNRTEEMCDGSIDPALAATCGRPLGLGFNYHTGDLYMVDAYLGLMVVGSSG 396

Query: 125 RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY 184
            +ATQLA  AEG  F FL GLDVDQG G+VYFT+AS  +  R + +L  +NDSTG L  Y
Sbjct: 397 GIATQLAAAAEGIPFRFLAGLDVDQGNGMVYFTEASTRFQLRDMQELIASNDSTGSLFRY 456

Query: 185 NPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQA 243
           +P+S +V VLL  L+   GVA+S D  F+LV+E T NR  ++WL GP+AN+ ++ +    
Sbjct: 457 DPQSREVRVLLGGLSVAVGVAVSRDGMFVLVAELTANRIRRFWLGGPKANTSEVFMELLG 516

Query: 244 KPHNIKRNPGLLQTFWEAAIITRQPAGTP----VPIGQRISAFGAVLDTISFEAQYSTTP 299
           KP NIKRN      FW A      P   P    +P+G R+S  G VL+       Y  + 
Sbjct: 517 KPSNIKRNE--RGEFWVAINNALGPPAPPESLVMPLGLRLSNDGRVLEVAPLVGAYQISA 574

Query: 300 ISEVQPFGGAL 310
           ISEVQ   G L
Sbjct: 575 ISEVQERNGEL 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2031486	335	SS2 "strictosidine synthase 2"	0.974	0.901	0.411	3.4e-54
TAIR|locus:2031496	325	AT1G74010 [Arabidopsis thalian	0.977	0.932	0.412	4.3e-54
TAIR|locus:2031511	329	SS3 "strictosidine synthase 3"	0.964	0.908	0.399	7.2e-52
TAIR|locus:2080575	374	AT3G57030 [Arabidopsis thalian	0.796	0.660	0.423	2.3e-44
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.777	0.598	0.388	1.8e-39
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.745	0.584	0.423	2.9e-39
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.748	0.594	0.400	7.8e-39
TAIR|locus:2040312	376	SSL2 "strictosidine synthase-l	0.748	0.617	0.408	4.9e-37
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.722	0.605	0.366	8.3e-35
TAIR|locus:2080660	376	AT3G57010 [Arabidopsis thalian	0.709	0.585	0.340	4.6e-34

TAIR|locus:2031486 SS2 "strictosidine synthase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 127/309 (41%), Positives = 180/309 (58%)

Query:     5 LSLFVFVFSLPRMVFSIP-TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAP 63
             +SL + + SL   VFS   +F K+  P    G E+ AF+  G  FYTGV+ G+ILKY   
Sbjct:     8 ISLLLLL-SLSSAVFSDDASFQKLPVPETRSGPEAFAFDSTGKGFYTGVSGGKILKYLPE 66

Query:    64 DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN 123
              G+ DFA  T + + + CDGT    L   C R  G+A +  T  LY+ADA  GL V+ P 
Sbjct:    67 TGYVDFAQITESSNSSWCDGTIGTALAGRCGRPAGIAFNEKTGDLYVADAPLGLHVISPA 126

Query:   124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYD-FRTIVKLNITNDSTGRLL 182
             G LAT++    +G+ F FLDGLDVD  TGVVYFT  S  +   + ++ L +  D+TG+L 
Sbjct:   127 GGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGL-KDATGKLY 185

Query:   183 SYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF-DIINF 241
              Y+P +  VTVL+  L+G AG A+S D SF+LVS+FT +   +YW++GP+A S  D  N 
Sbjct:   186 KYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNS 245

Query:   242 QAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPIS 301
              + P NIKR  G    FW A+++ +    T  P   ++++ G VL TI  + ++  T +S
Sbjct:   246 VSNPDNIKRI-GSTGNFWVASVVNKIIVPTN-PSAVKVNSNGEVLQTIPLKDKFGDTLLS 303

Query:   302 EVQPFGGAL 310
             EV  F G L
Sbjct:   304 EVNEFEGNL 312

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2031496 AT1G74010 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 129/313 (41%), Positives = 178/313 (56%)

Query:     5 LSLFVFVFSLPRMVFSIPTFT------KILFPPKAFGGESIAFEPVGGAFYTGVADGRIL 58
             ++ FVFV SL  + FS   F+      K+  P K  G ES AF+  GG FYTGV+ G+IL
Sbjct:     1 MASFVFVISLLLLSFSSAVFSDDASFQKLPVPDKRSGPESFAFDSTGG-FYTGVSGGKIL 59

Query:    59 KYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLL 118
             KY    G+ DFA  T + + A C+G         C R  G+AL+  T  LY+ADA  GL 
Sbjct:    60 KYVPGKGYVDFAQITDSSNSAWCNGALGTAFAGKCGRPAGIALNSKTGDLYVADAPLGLH 119

Query:   119 VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST 178
             V+ P G LAT+LA   +G+ F FLDGLDVD  TGVVYFT  S  +  R ++      D++
Sbjct:   120 VISPAGGLATKLADSVDGKPFKFLDGLDVDPTTGVVYFTSFSSKFGPREVLIAVGLKDAS 179

Query:   179 GRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF-D 237
             G+L  Y+P +  VT L+  L+G AG A+S D SF+LVSEF  +   KYW++GP+A +  D
Sbjct:   180 GKLFKYDPATKAVTELMEGLSGAAGCAVSSDGSFVLVSEFIKSNIKKYWIKGPKAGTIED 239

Query:   238 IINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYST 297
               +  + P NI+R  G    FW A+++ +    T  P   ++ A G VL TI  + ++  
Sbjct:   240 FSSLVSNPDNIRR-VGSTGNFWVASVVNKVVMPTD-PRAVKLDANGKVLQTIFLKNEFGN 297

Query:   298 TPISEVQPFGGAL 310
             T +SEV  F G L
Sbjct:   298 TLLSEVNEFNGHL 310

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031511 SS3 "strictosidine synthase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 123/308 (39%), Positives = 170/308 (55%)

Query:     7 LFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF 66
             L +  FS   +     +F K+  P    G E+ AF+  G  FYTGV  G+ILKY    G+
Sbjct:    12 LLLLSFSSSVLSTKKSSFQKLPVPGNRTGPEAFAFDSTGKGFYTGVTGGKILKYLPKKGY 71

Query:    67 TDFAFTTPTRSKAVCDG---TTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN 123
              DFA  T +   ++CDG   TTN++    C R  G+A +  T  LY+ADA  GL V+   
Sbjct:    72 VDFAQITNSSKSSLCDGALGTTNVEK---CGRPAGIAFNTKTGDLYVADAALGLHVIPRR 128

Query:   124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS 183
             G LA ++A    G+ F FLDGLDVD  TGVVYFT  S  +  R ++K   T DSTG+   
Sbjct:   129 GGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFK 188

Query:   184 YNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN-SFDIINFQ 242
             Y+P    VTVL+  L+G AG A+S D SF+LV +FT +   +YW++G +A  S D  N  
Sbjct:   189 YDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSV 248

Query:   243 AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISE 302
             + P NIKR  G    FW A+++     G   P   ++S+ G VL TI  + ++  T +SE
Sbjct:   249 SNPDNIKRI-GSTGNFWVASVVN-SATGPTNPSAVKVSSAGKVLQTIPLKDKFGDTLVSE 306

Query:   303 VQPFGGAL 310
             V  + G L
Sbjct:   307 VNEYKGQL 314

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2080575 AT3G57030 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
 Identities = 108/255 (42%), Positives = 141/255 (55%)

Query:    11 VFSLPRMVFSIPTF--TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQA-PDGFT 67
             +F+ P +  S   F   K++    A G ESIAF+P G   Y GV+DGRILK++  P G++
Sbjct:    30 IFAPPEISGSRDVFPSAKVVNLTGASGPESIAFDPAGEGPYVGVSDGRILKWRGEPLGWS 89

Query:    68 DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLA 127
             DFA T+  R +  C      +L  +C R  GL     T  LYIADAY GLLVVGP G LA
Sbjct:    90 DFAHTSSNRQE--CARPFAPELEHVCGRPLGLRFDKKTGDLYIADAYFGLLVVGPAGGLA 147

Query:   128 TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR 187
               L T AEGQ F F + LD+D+   V+YFTD S  +  R  +   +  D TGR + Y+  
Sbjct:   148 KPLVTEAEGQPFRFTNDLDIDEQEDVIYFTDTSARFQRRQFLAAVLNVDKTGRFIKYDRS 207

Query:   188 SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII-NFQAKPH 246
             S + TVLL+ L    GVA+S D SF+LV E T  + L+ WL GP A +  +       P 
Sbjct:   208 SKKATVLLQGLAFANGVALSKDRSFVLVVETTTCKILRLWLSGPNAGTHQVFAELPGFPD 267

Query:   247 NIKRNPGLLQTFWEA 261
             NI+RN      FW A
Sbjct:   268 NIRRNSN--GEFWVA 280

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 98/252 (38%), Positives = 137/252 (54%)

Query:    26 KILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVC--- 81
             K+ F  + FG ES+ F+ +G   YTG+ADGR++++     G+  F+  T   S+  C   
Sbjct:    75 KLEFVDQVFGPESLEFDSLGRGPYTGLADGRVVRWMGEAIGWETFSVVTSKWSEEACVRG 134

Query:    82 -DGTTNLDLG--PICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQA 138
              D TTN       +C R  GL  H  T  LYIADAY GLLVVGP G +AT LAT  EG+ 
Sbjct:   135 VDSTTNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKP 194

Query:   139 FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL 198
               F + LD+ +  G ++FTD S  YD      + +  +STGRLL Y+P +    ++L  L
Sbjct:   195 ILFANDLDIHRN-GSIFFTDTSKRYDRANHFFILLEGESTGRLLRYDPPTKTTHIVLEGL 253

Query:   199 TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII-NFQAKPHNIKRNPGLLQT 257
               P G+ +S D SFLL +E T  R +KYWL GP+    +++ +    P N++ N      
Sbjct:   254 AFPNGIQLSKDQSFLLFTETTNCRLVKYWLEGPKMGEVEVVADLPGFPDNVRINEE--GQ 311

Query:   258 FWEAAIITRQPA 269
             FW A    R PA
Sbjct:   312 FWVAIDCCRTPA 323

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 103/243 (42%), Positives = 139/243 (57%)

Query:    25 TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCD-- 82
             +KILF  +  G ES+AF+ +G   YTGVADGR+L +   + + DFA+T+  RS+ +CD  
Sbjct:    65 SKILFFNQIQGPESVAFDSLGRGPYTGVADGRVLFWDG-EKWIDFAYTSSNRSE-ICDPK 122

Query:    83 --GTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFH 140
                 + L    IC R  GL     T  LYIADAY GLL VGP G LAT L T AEG    
Sbjct:   123 PSALSYLRNEHICGRPLGLRFDKRTGDLYIADAYMGLLKVGPEGGLATPLVTEAEGVPLG 182

Query:   141 FLDGLDV-DQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLT 199
             F + LD+ D GT  VYFTD+S  Y  R  ++L  + D+TGR+L Y+P + +  VL+ NL 
Sbjct:   183 FTNDLDIADDGT--VYFTDSSISYQRRNFLQLVFSGDNTGRVLKYDPVAKKAVVLVSNLQ 240

Query:   200 GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINF-QAKPHNIKRNPGLLQTF 258
              P GV+IS D SF +  E       +YWL+G +A + D+  +    P N++ N      F
Sbjct:   241 FPNGVSISRDGSFFVFCEGDIGSLRRYWLKGEKAGTTDVFAYLPGHPDNVRTNQK--GEF 298

Query:   259 WEA 261
             W A
Sbjct:   299 WVA 301

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 97/242 (40%), Positives = 138/242 (57%)

Query:    25 TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGT 84
             ++I F  +  G ESIAF+P G   YTGVADGRIL +     +TDFA+T+  RS+ +CD  
Sbjct:    59 SEIRFLNEVQGPESIAFDPQGRGPYTGVADGRILFWNGTR-WTDFAYTSNNRSE-LCDPK 116

Query:    85 TNL-DL---GPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFH 140
              +L D      IC R  GL        LYIADAY G++ VGP G LAT +   A+G    
Sbjct:   117 PSLLDYLKDEDICGRPLGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLR 176

Query:   141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG 200
             F + LD+D   G VYFTD+S  +  R  + L ++ + +GR+L YNP++ + T L+RNL  
Sbjct:   177 FTNDLDIDD-EGNVYFTDSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQF 235

Query:   201 PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINF-QAKPHNIKRNPGLLQTFW 259
             P G+++  D SF +  E +  R  KYWL+G +A + +++      P NI+ N      FW
Sbjct:   236 PNGLSLGKDGSFFIFCEGSIGRLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKD--GDFW 293

Query:   260 EA 261
              A
Sbjct:   294 VA 295

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2040312 SSL2 "strictosidine synthase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 100/245 (40%), Positives = 136/245 (55%)

Query:    17 MVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPT 75
             +   IP F +++    A G ES  F+  G   YTG++DGRI+K+ A +  + DFA TT  
Sbjct:    34 LTVQIPDF-RLIPTTGALGPESFVFDFFGDGPYTGLSDGRIVKWLANESRWIDFAVTTSA 92

Query:    76 RSKAVCDGT-TNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGA 134
             R    C+G   +     +C R  GLA   +T  LYIADAY GLL VGP G +ATQ+    
Sbjct:    93 REG--CEGPHEHQRTEHVCGRPLGLAFDKSTGDLYIADAYMGLLKVGPTGGVATQVLPRE 150

Query:   135 EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL 194
               +A  F + LD++  TGVVYFTD+S VY  R  +   ++ D TGRL+ Y+  + QVT L
Sbjct:   151 LNEALRFTNSLDINPRTGVVYFTDSSSVYQRRNYIGAMMSGDKTGRLMKYD-NTKQVTTL 209

Query:   195 LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR--GPRANSFDIINFQAK-----PHN 247
             L NL    GVA+S +  +LLV E    R L+YWL     ++ S D     A+     P N
Sbjct:   210 LSNLAFVNGVALSQNGDYLLVVETAMCRILRYWLNETSVKSQSHDNYEIFAEGLPGFPDN 269

Query:   248 IKRNP 252
             IKR+P
Sbjct:   270 IKRSP 274

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 85/232 (36%), Positives = 128/232 (55%)

Query:    20 SIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSK 78
             ++ T  K +  P A G ESI F+P G   Y  V DGRILK++  D G+ DFA+T+P R  
Sbjct:    39 NVLTMAKTIPIPVA-GPESIEFDPKGEGPYAAVVDGRILKWRGDDLGWVDFAYTSPHRGN 97

Query:    79 AVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQA 138
               C  T   ++ P C R  GL     T  LYI D Y GL+ VGP G LA  +   AEG+ 
Sbjct:    98 --CSKT---EVVPTCGRPLGLTFEKKTGDLYICDGYLGLMKVGPEGGLAELIVDEAEGRK 152

Query:   139 FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL 198
               F +  D+D+   V YF D+S  Y FR +  + ++ + +GR++ Y+ ++ +  V++ NL
Sbjct:   153 VMFANQGDIDEEEDVFYFNDSSDKYHFRDVFFVAVSGERSGRVIRYDKKTKEAKVIMDNL 212

Query:   199 TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII-NFQAKPHNIK 249
                 G+A++ D SFL+  E   +   +YW++GP+A + DI       P NI+
Sbjct:   213 VCNNGLALNKDRSFLITCESGTSLVHRYWIKGPKAGTRDIFAKVPGYPDNIR 264

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2080660 AT3G57010 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 78/229 (34%), Positives = 127/229 (55%)

Query:    35 GGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGTTNLDLGPIC 93
             G ES+ F+P G   Y GV DGRILK++  + G+ DFA+T+P R     D  ++ ++ P C
Sbjct:    54 GPESLEFDPQGEGPYVGVTDGRILKWRGEELGWVDFAYTSPHR-----DNCSSHEVVPSC 108

Query:    94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV 153
              R  GL+    T  LYI D Y G++ VGP G LA  +   AEG+   F +  D+D+   +
Sbjct:   109 GRPLGLSFERKTGDLYICDGYFGVMKVGPEGGLAELVVDEAEGRKVMFANQGDIDEEEDI 168

Query:   154 VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFL 213
              YF D+S  Y FR +  ++++    GR++ Y+ +  +  V++  L  P G+A+S + SF+
Sbjct:   169 FYFNDSSDTYHFRDVFYVSLSGTKVGRVIRYDMKKKEAKVIMDKLRLPNGLALSKNGSFV 228

Query:   214 LVSEFTGNRTLKYWLRGPRANSFDII-NFQAKPHNIKRNPGLLQTFWEA 261
             +  E + N   + W++GP++ + ++       P NI+R P     FW A
Sbjct:   229 VTCESSTNICHRIWVKGPKSGTNEVFATLPGSPDNIRRTP--TGDFWVA 275

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P94111	STS1_ARATH	4, ., 3, ., 3, ., 2	0.4137	0.9193	0.8507	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.3.3	0.766
3rd Layer	4.3.3.2	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	4e-28
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	2e-06

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  104 bits (260), Expect = 4e-28
 Identities = 41/89 (46%), Positives = 57/89 (64%)

Query: 143 DGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPA 202
           + LDVD  TGV+YFTD+S  YD R ++   +  D TGRL+ Y+P +    VLL++L  P 
Sbjct: 1   NALDVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPN 60

Query: 203 GVAISVDSSFLLVSEFTGNRTLKYWLRGP 231
           G+A+S D SF+L  E    R  KYW++GP
Sbjct: 61  GIALSPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 44/194 (22%), Positives = 68/194 (35%), Gaps = 29/194 (14%)

Query: 36  GESIAFEPVGGA-FYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICR 94
           GE   ++P  GA  +  +  GRI +     G     F +P        G ++  L     
Sbjct: 27  GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSP-------GGFSSGALIDAGG 78

Query: 95  RTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVV 154
           R                      L+    G   T LA   +G   +  +   VD   G +
Sbjct: 79  RLIACEH-------------GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD-PDGRI 124

Query: 155 YFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLL 214
           +F D       ++  +       TG L   +P    V +L  +LT P G+A S D   L 
Sbjct: 125 WFGDMGYFDLGKSEERP------TGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLY 178

Query: 215 VSEFTGNRTLKYWL 228
           V++   NR  +Y L
Sbjct: 179 VADTPANRIHRYDL 192

Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	100.0
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	100.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.88
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.85
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.83
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.82
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.81
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.67
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.6
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.6
PRK11028	330	6-phosphogluconolactonase; Provisional	99.46
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.44
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
PRK11028	330	6-phosphogluconolactonase; Provisional	99.39
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.37
KOG1214	1289	consensus Nidogen and related basement membrane pr	99.35
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.31
COG3391	381	Uncharacterized conserved protein [Function unknow	99.27
COG3391	381	Uncharacterized conserved protein [Function unknow	99.19
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.17
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	99.14
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.1
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.06
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.04
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.01
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.01
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.01
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.98
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.95
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.92
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.86
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.85
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.82
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.77
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.76
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.69
PRK04792	448	tolB translocation protein TolB; Provisional	98.69
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.61
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.61
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.58
PRK04922	433	tolB translocation protein TolB; Provisional	98.55
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.52
PRK00178	430	tolB translocation protein TolB; Provisional	98.47
PRK04043	419	tolB translocation protein TolB; Provisional	98.47
PRK02889	427	tolB translocation protein TolB; Provisional	98.47
PRK05137	435	tolB translocation protein TolB; Provisional	98.45
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.39
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.36
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.34
PRK03629	429	tolB translocation protein TolB; Provisional	98.34
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	98.3
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.26
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.24
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.23
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.2
PRK02888	635	nitrous-oxide reductase; Validated	98.18
PRK01742	429	tolB translocation protein TolB; Provisional	98.17
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.15
PRK05137	435	tolB translocation protein TolB; Provisional	98.14
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.13
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.99
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.99
PRK03629	429	tolB translocation protein TolB; Provisional	97.98
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.97
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.96
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.95
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.9
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.9
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.89
PRK01029	428	tolB translocation protein TolB; Provisional	97.88
PRK04792	448	tolB translocation protein TolB; Provisional	97.85
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.82
PRK04922	433	tolB translocation protein TolB; Provisional	97.79
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.77
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.76
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.74
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.72
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.65
PRK02889	427	tolB translocation protein TolB; Provisional	97.64
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.64
PRK00178	430	tolB translocation protein TolB; Provisional	97.64
COG3211	616	PhoX Predicted phosphatase [General function predi	97.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.62
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.61
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.58
PRK04043	419	tolB translocation protein TolB; Provisional	97.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.51
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.51
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.49
PTZ00421	493	coronin; Provisional	97.46
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.44
KOG1273	405	consensus WD40 repeat protein [General function pr	97.36
PRK01742	429	tolB translocation protein TolB; Provisional	97.36
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.26
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.25
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.22
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.22
COG4946	668	Uncharacterized protein related to the periplasmic	97.19
KOG0266	456	consensus WD40 repeat-containing protein [General	97.16
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.13
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.09
KOG0266	456	consensus WD40 repeat-containing protein [General	97.08
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.06
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.02
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.95
KOG2055	514	consensus WD40 repeat protein [General function pr	96.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	96.86
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.85
PLN00181	793	protein SPA1-RELATED; Provisional	96.83
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.83
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.81
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.78
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.73
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.68
PRK02888	635	nitrous-oxide reductase; Validated	96.67
PTZ00421	493	coronin; Provisional	96.65
COG3211	616	PhoX Predicted phosphatase [General function predi	96.62
PRK01029	428	tolB translocation protein TolB; Provisional	96.57
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.53
KOG1215	877	consensus Low-density lipoprotein receptors contai	96.52
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.49
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.48
KOG1274	933	consensus WD40 repeat protein [General function pr	96.45
KOG1274	933	consensus WD40 repeat protein [General function pr	96.4
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.3
COG4946	668	Uncharacterized protein related to the periplasmic	96.29
KOG0286	343	consensus G-protein beta subunit [General function	96.22
KOG1539	910	consensus WD repeat protein [General function pred	96.2
KOG1407	313	consensus WD40 repeat protein [Function unknown]	96.16
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.14
KOG0315	311	consensus G-protein beta subunit-like protein (con	96.13
KOG2048	691	consensus WD40 repeat protein [General function pr	96.09
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.04
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.03
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.97
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.86
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.77
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.69
KOG1215	877	consensus Low-density lipoprotein receptors contai	95.69
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	95.58
PRK13616	591	lipoprotein LpqB; Provisional	95.52
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.51
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	95.31
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.26
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	95.24
KOG0279	315	consensus G protein beta subunit-like protein [Sig	95.17
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.1
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	95.04
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.02
KOG2055	514	consensus WD40 repeat protein [General function pr	95.01
KOG0278	334	consensus Serine/threonine kinase receptor-associa	94.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	94.97
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	94.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	94.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	94.88
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.88
PTZ00420	568	coronin; Provisional	94.81
KOG2139	445	consensus WD40 repeat protein [General function pr	94.77
smart00284	255	OLF Olfactomedin-like domains.	94.7
PTZ00420	568	coronin; Provisional	94.64
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	94.63
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	94.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	94.43
KOG0288	459	consensus WD40 repeat protein TipD [General functi	94.41
KOG0293	519	consensus WD40 repeat-containing protein [Function	94.17
KOG1539	910	consensus WD repeat protein [General function pred	94.12
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	93.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	93.82
PLN00181	793	protein SPA1-RELATED; Provisional	93.81
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	93.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	93.76
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	93.75
KOG4328	498	consensus WD40 protein [Function unknown]	93.69
KOG0640	430	consensus mRNA cleavage stimulating factor complex	93.47
PRK13616	591	lipoprotein LpqB; Provisional	93.39
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.39
COG5276	370	Uncharacterized conserved protein [Function unknow	93.32
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.1
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	92.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	92.7
KOG0643	327	consensus Translation initiation factor 3, subunit	92.6
KOG0310	487	consensus Conserved WD40 repeat-containing protein	92.58
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	92.57
KOG0278	334	consensus Serine/threonine kinase receptor-associa	92.39
KOG0289	506	consensus mRNA splicing factor [General function p	92.14
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.05
KOG3881	412	consensus Uncharacterized conserved protein [Funct	92.0
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	91.99
KOG2110	391	consensus Uncharacterized conserved protein, conta	91.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	91.38
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.0
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	90.63
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	90.46
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	90.35
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	90.27
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	89.99
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	89.82
KOG0639	705	consensus Transducin-like enhancer of split protei	89.58
KOG0263	707	consensus Transcription initiation factor TFIID, s	89.41
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.33
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	88.5
KOG0286	343	consensus G-protein beta subunit [General function	88.38
KOG0973	942	consensus Histone transcription regulator HIRA, WD	88.29
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	88.0
KOG0289	506	consensus mRNA splicing factor [General function p	87.99
KOG0294	362	consensus WD40 repeat-containing protein [Function	87.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	87.87
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	87.66
PHA02713	557	hypothetical protein; Provisional	87.53
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	87.27
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.16
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	87.09
KOG0973	942	consensus Histone transcription regulator HIRA, WD	86.15
KOG0296	399	consensus Angio-associated migratory cell protein	85.94
COG5276	370	Uncharacterized conserved protein [Function unknow	85.37
KOG0316	307	consensus Conserved WD40 repeat-containing protein	85.08
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	84.98
KOG2139	445	consensus WD40 repeat protein [General function pr	84.7
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	84.26
KOG2321	703	consensus WD40 repeat protein [General function pr	83.84
KOG3881	412	consensus Uncharacterized conserved protein [Funct	83.69
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	82.96
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	82.67
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	82.43
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	81.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	81.29
KOG0275	508	consensus Conserved WD40 repeat-containing protein	80.84

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=1.1e-44  Score=325.60  Aligned_cols=276  Identities=40%  Similarity=0.691  Sum_probs=241.2

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      .+.+||.+++|+.|.=-++...+++|.++... .+++.++..........|.+......++.|++|.||+++...|.|||
T Consensus        52 ~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V  131 (376)
T KOG1520|consen   52 HLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV  131 (376)
T ss_pred             ccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence            47899999999876446788889999999876 56777665422222334554333455788999999999966669999


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      ||++.|+++|++++++.+.+....+|+++.+.|++.|++ +|.+||||++..|++++++.++++.+++||+++||+.+..
T Consensus       132 aDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~  210 (376)
T KOG1520|consen  132 ADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKV  210 (376)
T ss_pred             EecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccc
Confidence            999999999999999888888889999999999999999 6999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCCC
Q 048181          191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQP  268 (310)
Q Consensus       191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~  268 (310)
                      ++++.+++.+|||+++|+|++++.+||+...||.||++.|+++|+.++  .++||+||||+.++  +|++|||.+..++.
T Consensus       211 ~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~--~G~fWVal~~~~~~  288 (376)
T KOG1520|consen  211 TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDS--TGHFWVALHSKRST  288 (376)
T ss_pred             hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECC--CCCEEEEEecccch
Confidence            999999999999999999999999999999999999999999999998  56999999999999  99999999888754


Q ss_pred             C-------C-----------------------CCceeeEEECCCCcEEEEEecCCCccccceeEEEecCCCC
Q 048181          269 A-------G-----------------------TPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL  310 (310)
Q Consensus       269 ~-------~-----------------------~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~~~~l  310 (310)
                      +       |                       .+|..|.+.|.+|++++++|++.++++..+++|.|++|+|
T Consensus       289 ~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~L  360 (376)
T KOG1520|consen  289 LWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHL  360 (376)
T ss_pred             HHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeE
Confidence            2       1                       1346677888999999999999999999999999999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=100.00  E-value=2.6e-34  Score=254.30  Aligned_cols=223  Identities=24%  Similarity=0.353  Sum_probs=175.9

Q ss_pred             cceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           36 GESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        36 Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      |||++||+ +|+|||+|+.+++|+|++++++...+..                     ...|.|++++.++|+||||+..
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---------------------~~~~~G~~~~~~~g~l~v~~~~   60 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---------------------LPGPNGMAFDRPDGRLYVADSG   60 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---------------------SSSEEEEEEECTTSEEEEEETT
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---------------------cCCCceEEEEccCCEEEEEEcC
Confidence            89999997 7999999999999999999977644321                     1229999997568999999875


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCc-cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                       ++..+|+++++++.+.....+. ++..|||+++++ +|+|||||+......         ....|+||+++++ ++++.
T Consensus        61 -~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   61 -GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             -CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEE
T ss_pred             -ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccc---------cccccceEEECCC-CeEEE
Confidence             5677799999888877664444 789999999999 599999998642110         0111899999998 88999


Q ss_pred             eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCC--Cceee-ecC---CCCCceeeeCCCCCCcEEEEEecCCC
Q 048181          194 LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA--NSFDI-INF---QAKPHNIKRNPGLLQTFWEAAIITRQ  267 (310)
Q Consensus       194 ~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~--g~~~~-~~l---~g~Pdgl~~d~~~dG~l~va~~~~~~  267 (310)
                      +.+++..||||+|+|||++|||+++.+++|++|+++.+..  ...++ ..+   .+.||||++|+  +|+||||++..  
T Consensus       129 ~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~--~G~l~va~~~~--  204 (246)
T PF08450_consen  129 VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS--DGNLWVADWGG--  204 (246)
T ss_dssp             EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT--TS-EEEEEETT--
T ss_pred             EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC--CCCEEEEEcCC--
Confidence            9999999999999999999999999999999999985421  12232 333   34699999999  99999999976  


Q ss_pred             CCCCCceeeEEECCCCcEEEEEecCCCccccceeEEEe
Q 048181          268 PAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQP  305 (310)
Q Consensus       268 ~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~  305 (310)
                            .+|.++||+|+++..|.+|..    .+|.++=
T Consensus       205 ------~~I~~~~p~G~~~~~i~~p~~----~~t~~~f  232 (246)
T PF08450_consen  205 ------GRIVVFDPDGKLLREIELPVP----RPTNCAF  232 (246)
T ss_dssp             ------TEEEEEETTSCEEEEEE-SSS----SEEEEEE
T ss_pred             ------CEEEEECCCccEEEEEcCCCC----CEEEEEE
Confidence                  489999999999999999944    5666553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.8e-32  Score=244.43  Aligned_cols=226  Identities=23%  Similarity=0.279  Sum_probs=172.8

Q ss_pred             CCCCCCcceEEEccCC-CEEEEEeCCCeEEEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           30 PPKAFGGESIAFEPVG-GAFYTGVADGRILKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      ..+..-.||++|+++. .|||+|+..++|+|+++. ++.+++..                    ....+.++.++ +.|+
T Consensus        21 ~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~--------------------p~~~~~~~~~d-~~g~   79 (307)
T COG3386          21 DKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS--------------------PGGFSSGALID-AGGR   79 (307)
T ss_pred             ecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC--------------------CCCcccceeec-CCCe
Confidence            3345679999999985 599999999999999997 44555532                    22346788887 7888


Q ss_pred             EEEEeCCCcEEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          108 LYIADAYSGLLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       108 LyVad~~~gi~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      |++|+.+  +.+++++.+.. +.++...++.+.++|||+.++++ |++||+|+.+ +.     ....+..+.|+|||+||
T Consensus        80 Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p  150 (307)
T COG3386          80 LIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGY-FD-----LGKSEERPTGSLYRVDP  150 (307)
T ss_pred             EEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcCC-CCEEEeCCCc-cc-----cCccccCCcceEEEEcC
Confidence            8888654  55555454444 67777777888999999999995 9999999983 11     01123456789999999


Q ss_pred             CCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec---CCCCCce-ee--ecCCCCCceeeeCCCCCCcEEE
Q 048181          187 RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR---GPRANSF-DI--INFQAKPHNIKRNPGLLQTFWE  260 (310)
Q Consensus       187 ~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~---~~~~g~~-~~--~~l~g~Pdgl~~d~~~dG~l~v  260 (310)
                      .++..+.+.+.+..||||||||||++||++||..++|++|+++   +...+.. .+  ...+|.|||+++|+  +|+||+
T Consensus       151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa--dG~lw~  228 (307)
T COG3386         151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA--DGNLWV  228 (307)
T ss_pred             CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC--CCCEEE
Confidence            6444444444599999999999999999999999999999987   3322322 12  33579999999999  999996


Q ss_pred             EEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          261 AAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       261 a~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      +.....       .+|.+|+|+|+.+..+.+|..
T Consensus       229 ~a~~~g-------~~v~~~~pdG~l~~~i~lP~~  255 (307)
T COG3386         229 AAVWGG-------GRVVRFNPDGKLLGEIKLPVK  255 (307)
T ss_pred             ecccCC-------ceEEEECCCCcEEEEEECCCC
Confidence            544431       379999999999999999974

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.88  E-value=3.8e-20  Score=192.34  Aligned_cols=221  Identities=15%  Similarity=0.133  Sum_probs=155.0

Q ss_pred             CCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeee-cCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           31 PKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFT-TPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        31 ~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      ..+..|.++++|+. |++|++|..+++|++++.++........ ++.++   .+|.   .....+.+|.||++++.++.|
T Consensus       565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~---~dG~---~~~a~f~~P~GIavd~~gn~L  638 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGL---RDGS---FEDATFNRPQGLAYNAKKNLL  638 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCC---CCCc---hhccccCCCcEEEEeCCCCEE
Confidence            45789999999974 7899999999999999999876443321 11110   1111   012356789999998545679


Q ss_pred             EEEeCCC-cEEEEeCCCCeEEEeecc------CCC------ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181          109 YIADAYS-GLLVVGPNGRLATQLATG------AEG------QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus       109 yVad~~~-gi~~id~~~~~~~~~~~~------~~g------~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      ||+|..+ .|.++|..++.+++++..      ..+      ..++.|.++++++++|++||+|..+              
T Consensus       639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~--------------  704 (1057)
T PLN02919        639 YVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ--------------  704 (1057)
T ss_pred             EEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--------------
Confidence            9999875 488899988887776532      111      2378899999999669999999764              


Q ss_pred             CCCceEEEEcCCCCeEEEee---------------cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce----
Q 048181          176 DSTGRLLSYNPRSSQVTVLL---------------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF----  236 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~---------------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~----  236 (310)
                         ++|+++|..++.+..+.               ..+..|+||+++|||++|||+++.+++|++|++++......    
T Consensus       705 ---~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        705 ---HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             ---CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence               34555555444433221               23568999999999999999999999999999864210000    


Q ss_pred             --------ee---e-----cCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCc
Q 048181          237 --------DI---I-----NFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGA  284 (310)
Q Consensus       237 --------~~---~-----~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~  284 (310)
                              ..   .     .....|.|+++++  +|++||++....        +|.++|+++.
T Consensus       782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~--dG~LYVADs~N~--------rIrviD~~tg  835 (1057)
T PLN02919        782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK--DGQIYVADSYNH--------KIKKLDPATK  835 (1057)
T ss_pred             cccCcccccccCCCCchhhhhccCCceeeEeC--CCcEEEEECCCC--------EEEEEECCCC
Confidence                    00   0     0113599999999  999999998874        5666666543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.85  E-value=1.5e-21  Score=143.56  Aligned_cols=89  Identities=53%  Similarity=0.823  Sum_probs=74.1

Q ss_pred             cceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCe
Q 048181          143 DGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNR  222 (310)
Q Consensus       143 ndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~  222 (310)
                      ||++|++++|.|||||++..|..++++.++++..++|+|++|||.+++++++.+++.+||||++++|+++|+|+|+...|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            79999995599999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCC
Q 048181          223 TLKYWLRGP  231 (310)
Q Consensus       223 I~~~~~~~~  231 (310)
                      |.||++.||
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999999874

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.83  E-value=4.9e-19  Score=149.39  Aligned_cols=224  Identities=16%  Similarity=0.172  Sum_probs=148.9

Q ss_pred             ceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC--eEEEEeC
Q 048181           37 ESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR--QLYIADA  113 (310)
Q Consensus        37 egia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g--~LyVad~  113 (310)
                      ||+.|+.+ +.|||+|+..+.|+|++-......-+..         ++       +   -..|..+- -.|  ..|++-.
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~i---------e~-------p---~~ag~ilp-v~~~~q~~~v~~   77 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKI---------EG-------P---PSAGFILP-VEGGPQEFAVGC   77 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEEEEE---------ec-------C---cceeEEEE-ecCCCceEEEee
Confidence            89999965 7899999999999998876432211100         00       0   01233332 222  3444433


Q ss_pred             CCc--EEEEeCCCCeEEEeec---cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          114 YSG--LLVVGPNGRLATQLAT---GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       114 ~~g--i~~id~~~~~~~~~~~---~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      +..  |...|-......++.+   ......-++.||..+|| +|+.|...+... .      ..++ ...|.||++-+. 
T Consensus        78 G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~-~------~~le-~~~g~Ly~~~~~-  147 (310)
T KOG4499|consen   78 GSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADF-G------DDLE-PIGGELYSWLAG-  147 (310)
T ss_pred             cceEEEEEcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccc-c------cccc-ccccEEEEeccC-
Confidence            332  4444422222222222   22233467889999999 599998776531 0      1122 124677777764 


Q ss_pred             CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC--CCCcee-ee---c----CCCCCceeeeCCCCCCcE
Q 048181          189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP--RANSFD-II---N----FQAKPHNIKRNPGLLQTF  258 (310)
Q Consensus       189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~--~~g~~~-~~---~----l~g~Pdgl~~d~~~dG~l  258 (310)
                      ++++..+..+..+|||+||.|.+.+|+.|+.+..|..|+++-+  .....+ +.   .    .+-.||||++|.  +|+|
T Consensus       148 h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L  225 (310)
T KOG4499|consen  148 HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNL  225 (310)
T ss_pred             CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcE
Confidence            8899999999999999999999999999999999966665532  222221 11   1    124799999999  9999


Q ss_pred             EEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCCccccceeEEE
Q 048181          259 WEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       259 ~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~~~~~~~t~~~  304 (310)
                      |||++++        +.|+++|| .||++..+.+|..    +||+++
T Consensus       226 ~Va~~ng--------~~V~~~dp~tGK~L~eiklPt~----qitscc  260 (310)
T KOG4499|consen  226 YVATFNG--------GTVQKVDPTTGKILLEIKLPTP----QITSCC  260 (310)
T ss_pred             EEEEecC--------cEEEEECCCCCcEEEEEEcCCC----ceEEEE
Confidence            9999998        48999998 5999999999954    666654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.82  E-value=1.1e-17  Score=174.11  Aligned_cols=219  Identities=11%  Similarity=0.148  Sum_probs=152.4

Q ss_pred             CCCCcceEEEccCCC-EEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEPVGG-AFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      .|..|.||+++++++ +|++|..+++|++++..++. ++++..+.... ...+|.  .........|.++++++.+++||
T Consensus       622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~-~~~gg~--~~~~~~ln~P~gVa~dp~~g~Ly  698 (1057)
T PLN02919        622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGS-DYQGGK--KGTSQVLNSPWDVCFEPVNEKVY  698 (1057)
T ss_pred             ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccC-CCCCCh--hhhHhhcCCCeEEEEecCCCeEE
Confidence            467899999999876 78888889999999987554 45543221110 001110  00112356899999985589999


Q ss_pred             EEeCCC-cEEEEeCCCCeEEEeeccC-----C-----CccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          110 IADAYS-GLLVVGPNGRLATQLATGA-----E-----GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       110 Vad~~~-gi~~id~~~~~~~~~~~~~-----~-----g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      |+|..+ .|++++..++.+..+....     .     ...+..|++|+++++++.|||+|..+                 
T Consensus       699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----------------  761 (1057)
T PLN02919        699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----------------  761 (1057)
T ss_pred             EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----------------
Confidence            999864 4999999887765553211     1     12467899999999644599999754                 


Q ss_pred             ceEEEEcCCCCeEEEee----------------------cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce
Q 048181          179 GRLLSYNPRSSQVTVLL----------------------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF  236 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~----------------------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~  236 (310)
                      ++|.++|.+++....+.                      ..+..|.||+++++|+ |||+++.+++|.+|+.++.   ..
T Consensus       762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg---~v  837 (1057)
T PLN02919        762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATK---RV  837 (1057)
T ss_pred             CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCC---eE
Confidence            46777776655433221                      1245799999999997 9999999999999998643   11


Q ss_pred             e-e---------------ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC-CcE
Q 048181          237 D-I---------------INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF-GAV  285 (310)
Q Consensus       237 ~-~---------------~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~  285 (310)
                      . +               ..+ ..|.||++++  +|++||++....        +|.++|.+ +++
T Consensus       838 ~tiaG~G~~G~~dG~~~~a~l-~~P~GIavd~--dG~lyVaDt~Nn--------~Irvid~~~~~~  892 (1057)
T PLN02919        838 TTLAGTGKAGFKDGKALKAQL-SEPAGLALGE--NGRLFVADTNNS--------LIRYLDLNKGEA  892 (1057)
T ss_pred             EEEeccCCcCCCCCccccccc-CCceEEEEeC--CCCEEEEECCCC--------EEEEEECCCCcc
Confidence            1 1               111 2699999999  999999998774        78888865 444

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.81  E-value=5.9e-18  Score=145.98  Aligned_cols=232  Identities=17%  Similarity=0.188  Sum_probs=174.7

Q ss_pred             hhhhhcCCceeee---ecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCC
Q 048181            8 FVFVFSLPRMVFS---IPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDG   83 (310)
Q Consensus         8 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g   83 (310)
                      +++.|+.|-|..+   -.+...+++|.. ..|..++.++||.+||.+...+-|-+++|..+ .+++.             
T Consensus        34 l~G~~a~~A~gs~pa~~~s~~~fpvp~G-~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-------------   99 (353)
T COG4257          34 LIGEFATPAAGSSPAPDGSSAEFPVPNG-SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-------------   99 (353)
T ss_pred             hhccccchhhcCCCCCCCccceeccCCC-CCccccccCCCCceEEecCccccceecCCCCCceEEEe-------------
Confidence            4555555555444   456777888843 57999999999999999999999999999855 44443             


Q ss_pred             CccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCcc
Q 048181           84 TTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVY  163 (310)
Q Consensus        84 ~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~  163 (310)
                            .....+|+|+.++ .+|..||||....|.++|+++.+.+.+.-..+ ..-...|-..+|++ |+||||....  
T Consensus       100 ------Lg~Ga~Phgiv~g-pdg~~Witd~~~aI~R~dpkt~evt~f~lp~~-~a~~nlet~vfD~~-G~lWFt~q~G--  168 (353)
T COG4257         100 ------LGSGASPHGIVVG-PDGSAWITDTGLAIGRLDPKTLEVTRFPLPLE-HADANLETAVFDPW-GNLWFTGQIG--  168 (353)
T ss_pred             ------cCCCCCCceEEEC-CCCCeeEecCcceeEEecCcccceEEeecccc-cCCCcccceeeCCC-ccEEEeeccc--
Confidence                  1345789999998 79999999999899999999988877632221 12234577899994 9999998653  


Q ss_pred             CccceeEeeeecCCCceEEEEcCCCCeEEEeecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee----
Q 048181          164 DFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI----  238 (310)
Q Consensus       164 ~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~----  238 (310)
                                      .--|+||.++.+++.... -..|+|||..|||. +|+++...+-|-+++...   +..++    
T Consensus       169 ----------------~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~~---~~aev~p~P  228 (353)
T COG4257         169 ----------------AYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPFA---GHAEVVPQP  228 (353)
T ss_pred             ----------------cceecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEccccc---CCcceecCC
Confidence                            222667776766665433 34799999999997 999999999999998643   33333    


Q ss_pred             ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          239 INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       239 ~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      ..+...-.++..|+  -|.+|++.++.        +.+.+|||.-+.=..+.+|..
T Consensus       229 ~~~~~gsRriwsdp--ig~~wittwg~--------g~l~rfdPs~~sW~eypLPgs  274 (353)
T COG4257         229 NALKAGSRRIWSDP--IGRAWITTWGT--------GSLHRFDPSVTSWIEYPLPGS  274 (353)
T ss_pred             CcccccccccccCc--cCcEEEeccCC--------ceeeEeCcccccceeeeCCCC
Confidence            33334567788999  99999999987        478888888777777888754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.67  E-value=1.9e-14  Score=127.14  Aligned_cols=192  Identities=22%  Similarity=0.368  Sum_probs=127.8

Q ss_pred             eEEEeCCCCCCCcceEEEc-cCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           24 FTKILFPPKAFGGESIAFE-PVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d-~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      .+.+.+++    |-|++++ ++|.+|+++.  +.+..++++.+ .+.+...        +.+      .....+|+.+++
T Consensus        34 ~~~~~~~~----~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~--------~~~------~~~~~~~ND~~v   93 (246)
T PF08450_consen   34 VEVIDLPG----PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADL--------PDG------GVPFNRPNDVAV   93 (246)
T ss_dssp             EEEEESSS----EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEE--------ETT------CSCTEEEEEEEE
T ss_pred             EEEEecCC----CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeec--------cCC------CcccCCCceEEE
Confidence            34456664    9999999 6777666664  34455586644 4444321        100      124568999999


Q ss_pred             ecCCCeEEEEeCCC---------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181          102 HYATRQLYIADAYS---------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus       102 d~~~g~LyVad~~~---------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      | ++|+||+++...         +|++++++ ++++.+..     .+..||++++++++..|||+|+..           
T Consensus        94 d-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----~~~~pNGi~~s~dg~~lyv~ds~~-----------  155 (246)
T PF08450_consen   94 D-PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----GLGFPNGIAFSPDGKTLYVADSFN-----------  155 (246)
T ss_dssp             --TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----EESSEEEEEEETTSSEEEEEETTT-----------
T ss_pred             c-CCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-----CcccccceEECCcchheeeccccc-----------
Confidence            8 799999997532         38999998 66665543     367899999999644699999864           


Q ss_pred             eecCCCceEEEEcCC--CCeE---EEee--cC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC-C
Q 048181          173 ITNDSTGRLLSYNPR--SSQV---TVLL--RN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ-A  243 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~--~g~~---~~~~--~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~-g  243 (310)
                            ++|++++.+  ++++   +++.  .. ...|.|++++++|+ |||+....++|++|+.+|..   .....+| .
T Consensus       156 ------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~---~~~i~~p~~  225 (246)
T PF08450_consen  156 ------GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKL---LREIELPVP  225 (246)
T ss_dssp             ------TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCE---EEEEE-SSS
T ss_pred             ------ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccE---EEEEcCCCC
Confidence                  678888764  2312   2232  22 23599999999997 99999999999999987531   2213344 4


Q ss_pred             CCceeeeCCCCCCcEEEEEe
Q 048181          244 KPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~l~va~~  263 (310)
                      .|.++++..+..+.|||+..
T Consensus       226 ~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  226 RPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SEEEEEEESTTSSEEEEEEB
T ss_pred             CEEEEEEECCCCCEEEEEeC
Confidence            79999994210468999853

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.60  E-value=3.3e-13  Score=116.85  Aligned_cols=216  Identities=11%  Similarity=0.117  Sum_probs=158.0

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCC-ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      ..++++++.. ..|.+|.+++||+.|++|..+ .|.|++++. ..+.|....                +....+-.-..+
T Consensus        94 ev~~ypLg~G-a~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~----------------~~a~~nlet~vf  155 (353)
T COG4257          94 EVETYPLGSG-ASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPL----------------EHADANLETAVF  155 (353)
T ss_pred             ceEEEecCCC-CCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeeccc----------------ccCCCcccceee
Confidence            4567788744 689999999999999999877 899999964 355554321                112223345678


Q ss_pred             ecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181          102 HYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       102 d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      | +.|+||++.. .| --++|+..+.++++-.. .   -..|+||++.+ +|.+|++.-..                 ..
T Consensus       156 D-~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP-q---G~gpyGi~atp-dGsvwyaslag-----------------na  211 (353)
T COG4257         156 D-PWGNLWFTGQ-IGAYGRLDPARNVISVFPAP-Q---GGGPYGICATP-DGSVWYASLAG-----------------NA  211 (353)
T ss_pred             C-CCccEEEeec-cccceecCcccCceeeeccC-C---CCCCcceEECC-CCcEEEEeccc-----------------cc
Confidence            8 8999999854 33 33889988777766432 2   24689999999 59999996432                 35


Q ss_pred             EEEEcCCCCeEEEeecC---CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC---CCCceeeeCCCC
Q 048181          181 LLSYNPRSSQVTVLLRN---LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ---AKPHNIKRNPGL  254 (310)
Q Consensus       181 l~~~d~~~g~~~~~~~~---l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~---g~Pdgl~~d~~~  254 (310)
                      |-++|+.++..+++...   -....+|..|+.|+ +++++..++++.+|+.+..   ...--.||   ..|+.|.+|.  
T Consensus       212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~---sW~eypLPgs~arpys~rVD~--  285 (353)
T COG4257         212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVT---SWIEYPLPGSKARPYSMRVDR--  285 (353)
T ss_pred             eEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccc---cceeeeCCCCCCCcceeeecc--
Confidence            88999988765554321   12334688888886 9999999999999987631   11112233   4699999999  


Q ss_pred             CCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          255 LQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       255 dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      .|.+|..++..+        .+.||||.-.-..++.+|..
T Consensus       286 ~grVW~sea~ag--------ai~rfdpeta~ftv~p~pr~  317 (353)
T COG4257         286 HGRVWLSEADAG--------AIGRFDPETARFTVLPIPRP  317 (353)
T ss_pred             CCcEEeeccccC--------ceeecCcccceEEEecCCCC
Confidence            999999999874        79999999999999999865

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.60  E-value=1.4e-13  Score=128.84  Aligned_cols=170  Identities=20%  Similarity=0.290  Sum_probs=117.3

Q ss_pred             CCCCcceEEEccCCCEEEEEeC-----------CC-eEEEEECC---Cce---EEeeeecCCCCccccCCCccccCCCCC
Q 048181           32 KAFGGESIAFEPVGGAFYTGVA-----------DG-RILKYQAP---DGF---TDFAFTTPTRSKAVCDGTTNLDLGPIC   93 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~-----------~g-~I~r~~~~---g~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~   93 (310)
                      .+..|.+|++|++|++|+++..           .+ +|+++...   |+.   ++|+                    ...
T Consensus        12 ~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--------------------~~l   71 (367)
T TIGR02604        12 LLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--------------------EEL   71 (367)
T ss_pred             ccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--------------------cCC
Confidence            4789999999999999888742           23 89998753   332   2232                    345


Q ss_pred             CceeeEEEecCCCeEEEEeCCCcEEEE-eCCC-----CeEEEeeccCCCc---cccCccceEEeCCCCeEEEEcCCCccC
Q 048181           94 RRTFGLALHYATRQLYIADAYSGLLVV-GPNG-----RLATQLATGAEGQ---AFHFLDGLDVDQGTGVVYFTDASGVYD  164 (310)
Q Consensus        94 ~~P~Gla~d~~~g~LyVad~~~gi~~i-d~~~-----~~~~~~~~~~~g~---~~~~pndvavd~~~G~lyvtd~~~~~~  164 (310)
                      ..|.||++. .+| |||++.. .|+++ +.++     ++.+.+.+.+...   +...+|++++++ +|+|||++......
T Consensus        72 ~~p~Gi~~~-~~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~  147 (367)
T TIGR02604        72 SMVTGLAVA-VGG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLAS  147 (367)
T ss_pred             CCccceeEe-cCC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCc
Confidence            689999996 677 9998754 58887 4332     1444555544332   346699999999 59999998743110


Q ss_pred             c--cceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEE
Q 048181          165 F--RTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKY  226 (310)
Q Consensus       165 ~--~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~  226 (310)
                      .  .............|+++|+++++++.+++..++..|+|++|+++|+ ||++|...+...++
T Consensus       148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i  210 (367)
T TIGR02604       148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV  210 (367)
T ss_pred             eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence            0  0000000112235899999999889999999999999999999997 89998866554443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.46  E-value=7.2e-11  Score=108.74  Aligned_cols=192  Identities=12%  Similarity=0.146  Sum_probs=118.6

Q ss_pred             CCcceEEEccCCCEEEEE-eCCCeEEEEEC--CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           34 FGGESIAFEPVGGAFYTG-VADGRILKYQA--PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d-~~~g~I~r~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      ..|..++++|+|+.+|+. ...+.|..++.  ++.+.....                  ....+.|.++++++.+..||+
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~------------------~~~~~~p~~i~~~~~g~~l~v   96 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE------------------SPLPGSPTHISTDHQGRFLFS   96 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee------------------ecCCCCceEEEECCCCCEEEE
Confidence            468999999999866665 45677755443  343332210                  122346889999855556888


Q ss_pred             EeCCCc-EEEEeCCC-CeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          111 ADAYSG-LLVVGPNG-RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       111 ad~~~g-i~~id~~~-~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      +....+ |..++.+. +..........+  ...|..++++|++..+|+++...                 ++|..||.++
T Consensus        97 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~-----------------~~v~v~d~~~  157 (330)
T PRK11028         97 ASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLKE-----------------DRIRLFTLSD  157 (330)
T ss_pred             EEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCCC-----------------CEEEEEEECC
Confidence            876543 66666542 222111111222  24578999999655788887643                 4566665543


Q ss_pred             -CeEEE------eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e---cCC------CCCceeeeC
Q 048181          189 -SQVTV------LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I---NFQ------AKPHNIKRN  251 (310)
Q Consensus       189 -g~~~~------~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~---~l~------g~Pdgl~~d  251 (310)
                       +.++.      ....-..|.+++|+|||++|||++...++|..|+++.. .++.+. .   .+|      ..|.+|+++
T Consensus       158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~  236 (330)
T PRK11028        158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHIT  236 (330)
T ss_pred             CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence             32211      11223579999999999999999998999999998732 233322 1   111      134468899


Q ss_pred             CCCCCc-EEEEEecC
Q 048181          252 PGLLQT-FWEAAIIT  265 (310)
Q Consensus       252 ~~~dG~-l~va~~~~  265 (310)
                      +  +|+ +|++....
T Consensus       237 p--dg~~lyv~~~~~  249 (330)
T PRK11028        237 P--DGRHLYACDRTA  249 (330)
T ss_pred             C--CCCEEEEecCCC
Confidence            9  885 78886543

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.45  E-value=1.3e-11  Score=124.27  Aligned_cols=242  Identities=18%  Similarity=0.174  Sum_probs=152.0

Q ss_pred             hhhhhhhcCCceee-eecceEEEeCC-CCCCCcceEEEcc-CCCEEEEEeCCCeEEEEEC------CCceEEeeeecCCC
Q 048181            6 SLFVFVFSLPRMVF-SIPTFTKILFP-PKAFGGESIAFEP-VGGAFYTGVADGRILKYQA------PDGFTDFAFTTPTR   76 (310)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~------~g~~~~~~~~~~~~   76 (310)
                      |++|+=|-.-|-.+ +-.+...++|. .....-.-||++| +|.||++|...++|+|+..      ...+++++..+..+
T Consensus       377 Sl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~C  456 (1899)
T KOG4659|consen  377 SLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVC  456 (1899)
T ss_pred             cEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCc
Confidence            34444444333333 22333445665 3445566799998 6999999999999999853      23467777776653


Q ss_pred             --CccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeecc---------------CCCccc
Q 048181           77 --SKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATG---------------AEGQAF  139 (310)
Q Consensus        77 --~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~---------------~~g~~~  139 (310)
                        +...|+.+ ..+....+..|.||++| ++|.||++|..+ |.+||..+ -++++...               ...-++
T Consensus       457 lp~desCGDG-alA~dA~L~~PkGIa~d-k~g~lYfaD~t~-IR~iD~~g-iIstlig~~~~~~~p~~C~~~~kl~~~~l  532 (1899)
T KOG4659|consen  457 LPADESCGDG-ALAQDAQLIFPKGIAFD-KMGNLYFADGTR-IRVIDTTG-IISTLIGTTPDQHPPRTCAQITKLVDLQL  532 (1899)
T ss_pred             cccccccCcc-hhcccceeccCCceeEc-cCCcEEEecccE-EEEeccCc-eEEEeccCCCCccCccccccccchhheee
Confidence              22236432 23445677899999998 899999999764 88898654 55554321               111257


Q ss_pred             cCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC-------CC--CeEEEee--cCCCCCceeEEcc
Q 048181          140 HFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP-------RS--SQVTVLL--RNLTGPAGVAISV  208 (310)
Q Consensus       140 ~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~-------~~--g~~~~~~--~~l~~pnGIa~~~  208 (310)
                      .+|.++|++|-++.+||-|.+-          ++....+++|..+-.       .+  .....++  ..+..|..|++++
T Consensus       533 eWPT~LaV~Pmdnsl~Vld~nv----------vlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~  602 (1899)
T KOG4659|consen  533 EWPTSLAVDPMDNSLLVLDTNV----------VLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGT  602 (1899)
T ss_pred             ecccceeecCCCCeEEEeecce----------EEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecC
Confidence            8999999999889999998753          222233444433210       00  0000011  2345779999999


Q ss_pred             CCCEEEEEecCCCeEE---EEEecCCC---CCcee-----e----------------ecCCCCCceeeeCCCCCCcEEEE
Q 048181          209 DSSFLLVSEFTGNRTL---KYWLRGPR---ANSFD-----I----------------INFQAKPHNIKRNPGLLQTFWEA  261 (310)
Q Consensus       209 dg~~Lyv~d~~~~~I~---~~~~~~~~---~g~~~-----~----------------~~l~g~Pdgl~~d~~~dG~l~va  261 (310)
                      +|. |||+|+...+|-   ++..+|.-   +|...     .                +.+ ..|..+|+.+  ||.+|+|
T Consensus       603 ~G~-lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~l-nsp~alaVsP--dg~v~IA  678 (1899)
T KOG4659|consen  603 DGA-LYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKL-NSPYALAVSP--DGDVIIA  678 (1899)
T ss_pred             Cce-EEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhcccc-CCcceEEECC--CCcEEEe
Confidence            995 999999876554   44433310   11100     0                111 3599999999  9999999


Q ss_pred             EecC
Q 048181          262 AIIT  265 (310)
Q Consensus       262 ~~~~  265 (310)
                      +.++
T Consensus       679 D~gN  682 (1899)
T KOG4659|consen  679 DSGN  682 (1899)
T ss_pred             cCCc
Confidence            9886

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.44  E-value=1.1e-10  Score=108.41  Aligned_cols=225  Identities=16%  Similarity=0.152  Sum_probs=134.2

Q ss_pred             CCcceEEEccCCCEEEEEe-CCCeEEEE--ECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           34 FGGESIAFEPVGGAFYTGV-ADGRILKY--QAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~-~~g~I~r~--~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      ..|..++++++|+.+|+.. ..|.|..+  +.+|........-      ...|...........+|+.+.+++....+||
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~------~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTV------RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEE------ESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeec------ccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            5799999999998777776 46777554  4445433211000      0000000011134568999999855567999


Q ss_pred             EeCCC-cEEEEeCC--CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          111 ADAYS-GLLVVGPN--GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       111 ad~~~-gi~~id~~--~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      +|.+. .|+.++.+  ++++.... ...-++-..|..+++++++..+|+.+....               .=.++.++..
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~---------------~v~v~~~~~~  224 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVD-SIKVPPGSGPRHLAFSPDGKYAYVVNELSN---------------TVSVFDYDPS  224 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEE-EEECSTTSSEEEEEE-TTSSEEEEEETTTT---------------EEEEEEEETT
T ss_pred             EecCCCEEEEEEEeCCCceEEEee-ccccccCCCCcEEEEcCCcCEEEEecCCCC---------------cEEEEeeccc
Confidence            99875 46665554  33343321 111123456899999996567899875421               1123444433


Q ss_pred             CCeEEEee--c-------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecC---CCCCceeeeCCCC
Q 048181          188 SSQVTVLL--R-------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF---QAKPHNIKRNPGL  254 (310)
Q Consensus       188 ~g~~~~~~--~-------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l---~g~Pdgl~~d~~~  254 (310)
                      +++++.+.  .       +-..|.+|+++|||++|||+....+.|..|+++.. .|..+. ..+   ...|.+|++++  
T Consensus       225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~G~~Pr~~~~s~--  301 (345)
T PF10282_consen  225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTGGKFPRHFAFSP--  301 (345)
T ss_dssp             TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEESSSSEEEEEE-T--
T ss_pred             CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCCCCCccEEEEeC--
Confidence            45444321  1       12368899999999999999999999999999753 355544 222   23599999999  


Q ss_pred             CCc-EEEEEecCCCCCCCCceeeEEECC-CCcEEEEE
Q 048181          255 LQT-FWEAAIITRQPAGTPVPIGQRISA-FGAVLDTI  289 (310)
Q Consensus       255 dG~-l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~  289 (310)
                      +|+ |||+.....      .-.++++|+ +|++...-
T Consensus       302 ~g~~l~Va~~~s~------~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  302 DGRYLYVANQDSN------TVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             TSSEEEEEETTTT------EEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCC------eEEEEEEeCCCCcEEEec
Confidence            996 788877654      134567775 57755543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=2.7e-10  Score=105.83  Aligned_cols=225  Identities=16%  Similarity=0.147  Sum_probs=139.2

Q ss_pred             CCCCcceEEEccCCCEEEEEeC----CCeEEE--EECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           32 KAFGGESIAFEPVGGAFYTGVA----DGRILK--YQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~----~g~I~r--~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      ....|..++++++++++|+...    .+.|..  ++++ ++.+.+...                 ......|..+++++.
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-----------------~~~g~~p~~i~~~~~   97 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-----------------PSGGSSPCHIAVDPD   97 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-----------------EESSSCEEEEEECTT
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-----------------ccCCCCcEEEEEecC
Confidence            3468999999999987777654    467664  5565 444443210                 124557899999866


Q ss_pred             CCeEEEEeCCCc-EEEEeCCC-CeEEEeecc---------CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181          105 TRQLYIADAYSG-LLVVGPNG-RLATQLATG---------AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus       105 ~g~LyVad~~~g-i~~id~~~-~~~~~~~~~---------~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      +..||+++...+ +..++.+. +.+......         ...+...+|..+.++|++..+|++|.+.            
T Consensus        98 g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~------------  165 (345)
T PF10282_consen   98 GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA------------  165 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT------------
T ss_pred             CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC------------
Confidence            677999998765 44444332 444332111         0112346788999999655799998753            


Q ss_pred             ecCCCceEEEE--cCCCCeEEE----eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee----ecCC-
Q 048181          174 TNDSTGRLLSY--NPRSSQVTV----LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI----INFQ-  242 (310)
Q Consensus       174 ~~~~~G~l~~~--d~~~g~~~~----~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~----~~l~-  242 (310)
                           .+|+.|  +..+++++.    ....-..|..|+|+|||+++||+....+.|..|+++.. .+..+.    ..++ 
T Consensus       166 -----D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  166 -----DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLPE  239 (345)
T ss_dssp             -----TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCET
T ss_pred             -----CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeeccc
Confidence                 244444  444333433    23445689999999999999999999999999999842 244332    2221 


Q ss_pred             ---C--CCceeeeCCCCCCc-EEEEEecCCCC-------C----------C--CCceeeEEECCCCcEEEEEecCC
Q 048181          243 ---A--KPHNIKRNPGLLQT-FWEAAIITRQP-------A----------G--TPVPIGQRISAFGAVLDTISFEA  293 (310)
Q Consensus       243 ---g--~Pdgl~~d~~~dG~-l~va~~~~~~~-------~----------~--~~~~~v~~~~~~G~~~~~~~~p~  293 (310)
                         +  .|.+|++++  ||+ |||+..+..+.       .          +  -..|+-+.++|+|+.+-+-....
T Consensus       240 ~~~~~~~~~~i~isp--dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  240 GFTGENAPAEIAISP--DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             TSCSSSSEEEEEE-T--TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred             cccccCCceeEEEec--CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence               1  588899999  995 79988775421       0          0  13466677777777666555443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.39  E-value=3.9e-10  Score=103.90  Aligned_cols=208  Identities=7%  Similarity=0.003  Sum_probs=126.2

Q ss_pred             CcceEEEccCCCEEEEEe-CCCeEEEEECC--CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           35 GGESIAFEPVGGAFYTGV-ADGRILKYQAP--DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~-~~g~I~r~~~~--g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      .|..++++++|+.+|+.. .+++|..++.+  +......                 ........|+++++++..+.+||+
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~-----------------~~~~~~~~~~~~~~~p~g~~l~v~  143 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI-----------------QIIEGLEGCHSANIDPDNRTLWVP  143 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce-----------------eeccCCCcccEeEeCCCCCEEEEe
Confidence            689999999998777764 46777766543  2221100                 001123468899998555678898


Q ss_pred             eCCCc-EEEEeCCC-CeEEEee-ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE--EEEcC
Q 048181          112 DAYSG-LLVVGPNG-RLATQLA-TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL--LSYNP  186 (310)
Q Consensus       112 d~~~g-i~~id~~~-~~~~~~~-~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l--~~~d~  186 (310)
                      +...+ |..+|.++ +.+.... ....-..-..|+++++++++..+|+++...                 ++|  |.++.
T Consensus       144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-----------------~~v~v~~~~~  206 (330)
T PRK11028        144 CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-----------------SSVDVWQLKD  206 (330)
T ss_pred             eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-----------------CEEEEEEEeC
Confidence            87644 77777654 3322100 000001124589999999655688887532                 334  44443


Q ss_pred             CCCeEEEeec---------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecC--CCCCceeeeCCCC
Q 048181          187 RSSQVTVLLR---------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF--QAKPHNIKRNPGL  254 (310)
Q Consensus       187 ~~g~~~~~~~---------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l--~g~Pdgl~~d~~~  254 (310)
                      .+++.+.+..         +..+|.+|+++|||++||+++...+.|..|+++.. .+..++ ...  ...|.++++++  
T Consensus       207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-~~~~~~~~~~~~~~~p~~~~~~~--  283 (330)
T PRK11028        207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED-GSVLSFEGHQPTETQPRGFNIDH--  283 (330)
T ss_pred             CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC-CCeEEEeEEEeccccCCceEECC--
Confidence            3344332211         11245579999999999999888889999988642 233333 222  23699999999  


Q ss_pred             CC-cEEEEEecCCCCCCCCceeeEEECC-CCcE
Q 048181          255 LQ-TFWEAAIITRQPAGTPVPIGQRISA-FGAV  285 (310)
Q Consensus       255 dG-~l~va~~~~~~~~~~~~~~v~~~~~-~G~~  285 (310)
                      || .||++....+      .-.+++++. +|.+
T Consensus       284 dg~~l~va~~~~~------~v~v~~~~~~~g~l  310 (330)
T PRK11028        284 SGKYLIAAGQKSH------HISVYEIDGETGLL  310 (330)
T ss_pred             CCCEEEEEEccCC------cEEEEEEcCCCCcE
Confidence            99 5788875443      135666774 4653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.37  E-value=1.3e-10  Score=108.89  Aligned_cols=209  Identities=18%  Similarity=0.165  Sum_probs=124.3

Q ss_pred             CCCCCcceEEEccCCCEEEEEeCCCeEEEEEC-CC------ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181           31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQA-PD------GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY  103 (310)
Q Consensus        31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~-~g------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~  103 (310)
                      ..+..|+||++.++| +|+++  ..+|+++.. ++      +.+++....+.            .-......+++++++ 
T Consensus        69 ~~l~~p~Gi~~~~~G-lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~------------~~~~~~~~~~~l~~g-  132 (367)
T TIGR02604        69 EELSMVTGLAVAVGG-VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGG------------QINNHHHSLNSLAWG-  132 (367)
T ss_pred             cCCCCccceeEecCC-EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCC------------CCCcccccccCceEC-
Confidence            357789999999888 77765  557998843 22      22233210000            000113458899997 


Q ss_pred             CCCeEEEEeCC--------------------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCcc
Q 048181          104 ATRQLYIADAY--------------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVY  163 (310)
Q Consensus       104 ~~g~LyVad~~--------------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~  163 (310)
                      ++|+||+++..                    .+|+++++++++.+.++.     .+..|+++++++ +|++|+||....-
T Consensus       133 pDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~-~G~l~~tdn~~~~  206 (367)
T TIGR02604       133 PDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDS-WGDVFFCDNDDPP  206 (367)
T ss_pred             CCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECC-CCCEEEEccCCCc
Confidence            78999997651                    138999999887776643     367899999999 5999999975321


Q ss_pred             CccceeEeeeecCCCceEE-----EEcCCCC---eE---------------EEeecCCCCCceeEEccC-------CCEE
Q 048181          164 DFRTIVKLNITNDSTGRLL-----SYNPRSS---QV---------------TVLLRNLTGPAGVAISVD-------SSFL  213 (310)
Q Consensus       164 ~~~~~~~~~~~~~~~G~l~-----~~d~~~g---~~---------------~~~~~~l~~pnGIa~~~d-------g~~L  213 (310)
                        ...+..+......|..+     ..++..+   +.               .........|.|+++...       .+.+
T Consensus       207 --~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~  284 (367)
T TIGR02604       207 --LCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLL  284 (367)
T ss_pred             --eeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCE
Confidence              00000000010011000     0000000   00               001112246899999842       2458


Q ss_pred             EEEecCCCeEEEEEecCCCC---Cc-eee-ec--CCCCCceeeeCCCCCCcEEEEEecC
Q 048181          214 LVSEFTGNRTLKYWLRGPRA---NS-FDI-IN--FQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       214 yv~d~~~~~I~~~~~~~~~~---g~-~~~-~~--l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ++++...++|+++.++....   ++ ..+ ..  .-+.|-.+++++  ||.|||+++..
T Consensus       285 fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~p--DG~Lyv~d~~~  341 (367)
T TIGR02604       285 LVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGP--DGALYVSDWYD  341 (367)
T ss_pred             EeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECC--CCCEEEEEecc
Confidence            99999999999999863211   11 112 21  115788999999  99999999654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=99.35  E-value=5.5e-11  Score=115.52  Aligned_cols=223  Identities=16%  Similarity=0.121  Sum_probs=156.5

Q ss_pred             EeCCCCCCCcceEEEc-cCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           27 ILFPPKAFGGESIAFE-PVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        27 ~~~~~~~~~Pegia~d-~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      |-+|+.  -|-||++| .+..+||+|+....|.|-...|.. +++.                   ...+..|-|||+|-.
T Consensus      1020 l~~p~~--IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~-------------------n~~L~SPEGiAVDh~ 1078 (1289)
T KOG1214|consen 1020 LSLPGS--IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV-------------------NSGLISPEGIAVDHI 1078 (1289)
T ss_pred             Eecccc--eeeeeecccccceEEEeecCCCccccccccCCCCceee-------------------cccCCCccceeeeec
Confidence            555664  37789999 556799999999999998887643 3321                   245678999999866


Q ss_pred             CCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          105 TRQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       105 ~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      ..++|.+|... .|-+-.+++.+.+++...    .+..|.+|++|+-.|+||+||+..               .+-.|-+
T Consensus      1079 ~Rn~ywtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWnR---------------enPkIet 1139 (1289)
T KOG1214|consen 1079 RRNMYWTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWNR---------------ENPKIET 1139 (1289)
T ss_pred             cceeeeeccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeeccccc---------------cCCccee
Confidence            77899998754 233333445444444432    366789999999889999999863               1234544


Q ss_pred             EcCCCCeEE-EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEE
Q 048181          184 YNPRSSQVT-VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEA  261 (310)
Q Consensus       184 ~d~~~g~~~-~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va  261 (310)
                      .+.+...-+ .+.+.+..|||+.|+|-.+.|-.+|..++|+-...+++.  |...+ .+|. +|-+|+-+.  + ++|-+
T Consensus      1140 s~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~~Lq-YPF~itsy~--~-~fY~T 1213 (1289)
T KOG1214|consen 1140 SSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQNNLQ-YPFSITSYA--D-HFYHT 1213 (1289)
T ss_pred             eccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhhccc-Cceeeeecc--c-cceee
Confidence            444422223 344678899999999999999999999999999988864  54444 5665 899999998  6 48888


Q ss_pred             EecCCCCCCCCceeeEEECCCCcEEEEEecCCCc-cccceeEE
Q 048181          262 AIITRQPAGTPVPIGQRISAFGAVLDTISFEAQY-STTPISEV  303 (310)
Q Consensus       262 ~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~-~~~~~t~~  303 (310)
                      +|--.        .|+.++--+.-.+...+|.+- ++=.||.|
T Consensus      1214 DWk~n--------~vvsv~~~~~~~td~~~p~~~s~lyGItav 1248 (1289)
T KOG1214|consen 1214 DWKRN--------GVVSVNKHSGQFTDEYLPEQRSHLYGITAV 1248 (1289)
T ss_pred             ccccC--------ceEEeeccccccccccccccccceEEEEec
Confidence            88653        678888766655666666432 23344444

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=5.1e-10  Score=101.71  Aligned_cols=196  Identities=18%  Similarity=0.240  Sum_probs=124.3

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      .+.+..|+.  .+.+..++..|.|+ +......++..+. ++. +.++..        ++       .....+|+...++
T Consensus        59 ~~~~~~p~~--~~~~~~~d~~g~Lv-~~~~g~~~~~~~~-~~~~t~~~~~--------~~-------~~~~~r~ND~~v~  119 (307)
T COG3386          59 KRVFPSPGG--FSSGALIDAGGRLI-ACEHGVRLLDPDT-GGKITLLAEP--------ED-------GLPLNRPNDGVVD  119 (307)
T ss_pred             eEEEECCCC--cccceeecCCCeEE-EEccccEEEeccC-CceeEEeccc--------cC-------CCCcCCCCceeEc
Confidence            456677764  47788888777744 4433333333322 333 443311        11       1345789999998


Q ss_pred             cCCCeEEEEeCC-----C------c-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181          103 YATRQLYIADAY-----S------G-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK  170 (310)
Q Consensus       103 ~~~g~LyVad~~-----~------g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~  170 (310)
                       ++|++|+.+..     .      + ++++++.++..+.+.     ..+..||+|+++|++-.+|++|+..         
T Consensus       120 -pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-----~~~~~~NGla~SpDg~tly~aDT~~---------  184 (307)
T COG3386         120 -PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-----DDLTIPNGLAFSPDGKTLYVADTPA---------  184 (307)
T ss_pred             -CCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-----CcEEecCceEECCCCCEEEEEeCCC---------
Confidence             78999998776     2      2 999998765444332     1367899999999644999999864         


Q ss_pred             eeeecCCCceEEEEcCC--CC----eEEEeec--CCCCCceeEEccCCCEEEEE-ecCCCeEEEEEecCCCCCceeeecC
Q 048181          171 LNITNDSTGRLLSYNPR--SS----QVTVLLR--NLTGPAGVAISVDSSFLLVS-EFTGNRTLKYWLRGPRANSFDIINF  241 (310)
Q Consensus       171 ~~~~~~~~G~l~~~d~~--~g----~~~~~~~--~l~~pnGIa~~~dg~~Lyv~-d~~~~~I~~~~~~~~~~g~~~~~~l  241 (310)
                              +++++++-+  ++    +...+.-  .-..|.|+++|.||+ ||++ .....+|.+|+.+|...+.   ..+
T Consensus       185 --------~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~l~~~---i~l  252 (307)
T COG3386         185 --------NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGKLLGE---IKL  252 (307)
T ss_pred             --------CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCCcEEEE---EEC
Confidence                    456666432  11    1111111  225799999999997 7854 4444599999987643322   445


Q ss_pred             C-CCCceeeeCCCCC-CcEEEEEecCC
Q 048181          242 Q-AKPHNIKRNPGLL-QTFWEAAIITR  266 (310)
Q Consensus       242 ~-g~Pdgl~~d~~~d-G~l~va~~~~~  266 (310)
                      | ..|.++++-.. + ..|||+....+
T Consensus       253 P~~~~t~~~FgG~-~~~~L~iTs~~~~  278 (307)
T COG3386         253 PVKRPTNPAFGGP-DLNTLYITSARSG  278 (307)
T ss_pred             CCCCCccceEeCC-CcCEEEEEecCCC
Confidence            6 57888888651 3 46999977653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=7.5e-09  Score=97.42  Aligned_cols=220  Identities=17%  Similarity=0.161  Sum_probs=150.8

Q ss_pred             CCcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ..|.++++.++| .+|++......+..++.. .......                 .......|.|+++.....++|+++
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~-----------------~~~g~~~p~~i~v~~~~~~vyv~~   92 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQS-----------------LSVGGVYPAGVAVNPAGNKVYVTT   92 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCceeeecccc-cceeeee-----------------ccCCCccccceeeCCCCCeEEEec
Confidence            379999999998 566666555555555544 2111100                 011226899999975566799998


Q ss_pred             CC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      .. +.|.+||.++.+......  -|   ..|.+++++++++.+|++|...               .++.+..+|..++++
T Consensus        93 ~~~~~v~vid~~~~~~~~~~~--vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~  152 (381)
T COG3391          93 GDSNTVSVIDTATNTVLGSIP--VG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKV  152 (381)
T ss_pred             CCCCeEEEEcCcccceeeEee--ec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeE
Confidence            66 458999966544332221  12   2688999999867999999852               247899999988776


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee---eecCCCCCceeeeCCCCCCc-EEEEEecCC-
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD---IINFQAKPHNIKRNPGLLQT-FWEAAIITR-  266 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~---~~~l~g~Pdgl~~d~~~dG~-l~va~~~~~-  266 (310)
                      ......-..|-|++++|+|+.+|+++...++|..++.++.......   .......|.++++++  +|+ +||++.... 
T Consensus       153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~--~g~~~yV~~~~~~~  230 (381)
T COG3391         153 TATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP--DGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC--CCCEEEEEeccCCC
Confidence            6554333368999999999999999999999999997654221111   122335799999999  997 899988762 


Q ss_pred             -CCC--------------C-CC-ceeeEEECCCCcEEEEEecCC
Q 048181          267 -QPA--------------G-TP-VPIGQRISAFGAVLDTISFEA  293 (310)
Q Consensus       267 -~~~--------------~-~~-~~~v~~~~~~G~~~~~~~~p~  293 (310)
                       ...              + .. .+..+.++|+|+.+.+.....
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~  274 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG  274 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence             110              1 11 456788899999888886663

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=1.3e-08  Score=95.85  Aligned_cols=186  Identities=20%  Similarity=0.251  Sum_probs=129.1

Q ss_pred             CCcceEEEccCCC-EEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           34 FGGESIAFEPVGG-AFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ..|.++++.+.|. +|......+.|..++.... ....                    ......|.++++++.++.+||+
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~--------------------~~vG~~P~~~~~~~~~~~vYV~  133 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS--------------------IPVGLGPVGLAVDPDGKYVYVA  133 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE--------------------eeeccCCceEEECCCCCEEEEE
Confidence            6799999999987 6666666788999985432 2111                    1223379999998667799999


Q ss_pred             eCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          112 DAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       112 d~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      +..   +.+.++|.+++++...  ...|   ..|-++++++++..+|++|..                 +++|..+|..+
T Consensus       134 n~~~~~~~vsvid~~t~~~~~~--~~vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~  191 (381)
T COG3391         134 NAGNGNNTVSVIDAATNKVTAT--IPVG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSG  191 (381)
T ss_pred             ecccCCceEEEEeCCCCeEEEE--EecC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCC
Confidence            984   3499999988765433  2222   145799999964459999954                 36788888765


Q ss_pred             CeEEE-----eecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EE
Q 048181          189 SQVTV-----LLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FW  259 (310)
Q Consensus       189 g~~~~-----~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~  259 (310)
                      ..+..     .......|.++++++||+.+||++..+  +++.+++........... .+.. .|.++++++  +|. +|
T Consensus       192 ~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p--~g~~~y  268 (381)
T COG3391         192 NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDP--AGKAAY  268 (381)
T ss_pred             cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECC--CCCEEE
Confidence            54442     234567899999999999999999988  689988875422111111 2222 599999999  996 56


Q ss_pred             EEEec
Q 048181          260 EAAII  264 (310)
Q Consensus       260 va~~~  264 (310)
                      ++...
T Consensus       269 v~~~~  273 (381)
T COG3391         269 VANSQ  273 (381)
T ss_pred             EEecC
Confidence            66554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.17  E-value=3.4e-09  Score=97.87  Aligned_cols=175  Identities=20%  Similarity=0.234  Sum_probs=101.2

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEec---CCCeE
Q 048181           33 AFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY---ATRQL  108 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~---~~g~L  108 (310)
                      |..|.+|++.|||++|+++. .|+|++++.++.. ..+.....             ..........||++++   .++.|
T Consensus         1 L~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~-------------v~~~~~~gllgia~~p~f~~n~~l   66 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPE-------------VFADGERGLLGIAFHPDFASNGYL   66 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TT-------------TBTSTTBSEEEEEE-TTCCCC-EE
T ss_pred             CCCceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceeccccc-------------ccccccCCcccceeccccCCCCEE
Confidence            45799999999999777665 9999999977654 23322110             0112234678999984   25899


Q ss_pred             EEEeCC---------CcEEEEeCCCC--e---EEEeeccCCC--ccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181          109 YIADAY---------SGLLVVGPNGR--L---ATQLATGAEG--QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus       109 yVad~~---------~gi~~id~~~~--~---~~~~~~~~~g--~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      ||+-..         ..|.++..+.+  .   .+.+......  .....-..|+++| +|.|||+-.....  .....  
T Consensus        67 Yv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~--~~~~~--  141 (331)
T PF07995_consen   67 YVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGN--DDNAQ--  141 (331)
T ss_dssp             EEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTT--GGGGC--
T ss_pred             EEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCC--ccccc--
Confidence            997542         13666654433  1   2233222111  1233456799999 5999998654321  00000  


Q ss_pred             eecCCCceEEEEcCCCC-------------eEEEeecCCCCCceeEEccCCCEEEEEecCCC---eEEEE
Q 048181          173 ITNDSTGRLLSYNPRSS-------------QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN---RTLKY  226 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g-------------~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~---~I~~~  226 (310)
                      -.....|+|+|++++..             ..++.+.++..|.|++|+|....||++|....   +|.++
T Consensus       142 ~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i  211 (331)
T PF07995_consen  142 DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRI  211 (331)
T ss_dssp             STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE
T ss_pred             ccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEe
Confidence            01234688999987632             23566778889999999998335999886543   45554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=99.14  E-value=3.2e-08  Score=87.18  Aligned_cols=203  Identities=13%  Similarity=0.148  Sum_probs=113.5

Q ss_pred             eEEEeCCCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           24 FTKILFPPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      ++..++|+-...+.||+|+++ +.||.+....+.|+.++.+|+.. .+..                   ...+.+-||++
T Consensus        12 i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l-------------------~g~~D~EgI~y   72 (248)
T PF06977_consen   12 IEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL-------------------DGFGDYEGITY   72 (248)
T ss_dssp             EEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--------------------SS-SSEEEEEE
T ss_pred             EeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC-------------------CCCCCceeEEE
Confidence            445677876667999999997 55777777889999999987653 3321                   22456889999


Q ss_pred             ecCCCeEEEEeCCC-cEEEEeC--CCCeE-----EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181          102 HYATRQLYIADAYS-GLLVVGP--NGRLA-----TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus       102 d~~~g~LyVad~~~-gi~~id~--~~~~~-----~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      - .++.+.+++... .++.++.  .+..+     +.+.-......=....|++.|+.++++|+.--.             
T Consensus        73 ~-g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-------------  138 (248)
T PF06977_consen   73 L-GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-------------  138 (248)
T ss_dssp             --STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-------------
T ss_pred             E-CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-------------
Confidence            4 777777777543 4666554  33221     112111111111235799999987899987321             


Q ss_pred             ecCCCceEEEEcC--CCCeEEEee--------cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e---
Q 048181          174 TNDSTGRLLSYNP--RSSQVTVLL--------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I---  239 (310)
Q Consensus       174 ~~~~~G~l~~~d~--~~g~~~~~~--------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~---  239 (310)
                        .| .+||.++.  .........        ..+.-+-+++++|..++||+-...+++|..++.+|.-.....+ .   
T Consensus       139 --~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~  215 (248)
T PF06977_consen  139 --KP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFH  215 (248)
T ss_dssp             --SS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGG
T ss_pred             --CC-hhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCccc
Confidence              12 34666653  112222111        1344689999999998999999999999999976542222222 1   


Q ss_pred             ----cCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          240 ----NFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       240 ----~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                          .++ -|-||++|+  +|+|||+.-.+
T Consensus       216 gl~~~~~-QpEGIa~d~--~G~LYIvsEpN  242 (248)
T PF06977_consen  216 GLSKDIP-QPEGIAFDP--DGNLYIVSEPN  242 (248)
T ss_dssp             G-SS----SEEEEEE-T--T--EEEEETTT
T ss_pred             CcccccC-CccEEEECC--CCCEEEEcCCc
Confidence                123 499999999  99999997654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.10  E-value=2.7e-07  Score=82.44  Aligned_cols=203  Identities=11%  Similarity=0.068  Sum_probs=127.3

Q ss_pred             CCcceEEEccCCCEEEEE-eCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-
Q 048181           34 FGGESIAFEPVGGAFYTG-VADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d-~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-  111 (310)
                      ..|..++++++|+.+|+. ..+++|..++.........                   ......|.+++++ ++|.++++ 
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~-~dg~~l~~~  132 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE-------------------IPVGVEPEGMAVS-PDGKIVVNT  132 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE-------------------eeCCCCcceEEEC-CCCCEEEEE
Confidence            357889999999866665 4568888888764322110                   0112346789997 56666554 


Q ss_pred             eCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          112 DAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       112 d~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      .... .+..+|.++++......  .+   ..|+.++++++ |+ +|++...                 +|.++.+|..++
T Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~--~~---~~~~~~~~s~d-g~~l~~~~~~-----------------~~~v~i~d~~~~  189 (300)
T TIGR03866       133 SETTNMAHFIDTKTYEIVDNVL--VD---QRPRFAEFTAD-GKELWVSSEI-----------------GGTVSVIDVATR  189 (300)
T ss_pred             ecCCCeEEEEeCCCCeEEEEEE--cC---CCccEEEECCC-CCEEEEEcCC-----------------CCEEEEEEcCcc
Confidence            3332 25667877655432111  11   24678899995 65 5565321                 356777877666


Q ss_pred             eEEEeec--------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EE
Q 048181          190 QVTVLLR--------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FW  259 (310)
Q Consensus       190 ~~~~~~~--------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~  259 (310)
                      +......        ....|.+++++|||+++|++....++|..++...   +.... ......|..+++++  +|. ||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~--~g~~l~  264 (300)
T TIGR03866       190 KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLVGQRVWQLAFTP--DEKYLL  264 (300)
T ss_pred             eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEeCCCcceEEECC--CCCEEE
Confidence            4322111        1224679999999999999887788899998753   33221 22234588999999  996 45


Q ss_pred             EEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          260 EAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       260 va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                      ++....        +.+.++|. .++++..+...
T Consensus       265 ~~~~~~--------~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       265 TTNGVS--------NDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             EEcCCC--------CeEEEEECCCCcEEEEEEcc
Confidence            554433        37888996 58888888764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.06  E-value=3.7e-08  Score=89.05  Aligned_cols=180  Identities=14%  Similarity=0.130  Sum_probs=107.0

Q ss_pred             eeeEEEecCCCeEEEEeCCC-------------cEEEEeCCCCeEEEeec--cCCCccccCccceEEeCCC-----CeEE
Q 048181           96 TFGLALHYATRQLYIADAYS-------------GLLVVGPNGRLATQLAT--GAEGQAFHFLDGLDVDQGT-----GVVY  155 (310)
Q Consensus        96 P~Gla~d~~~g~LyVad~~~-------------gi~~id~~~~~~~~~~~--~~~g~~~~~pndvavd~~~-----G~ly  155 (310)
                      ..++.+| +.|+|||.|.+.             .|+.+|++++++.....  ...-++-.+.||+++|...     +.+|
T Consensus         3 V~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             ccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            3578998 899999999652             38999999886532211  1111245678999999842     5899


Q ss_pred             EEcCCCccCccceeEeeeecCCCceEEEEcCCC-----CeEEEeecC-----CCCCceeEEcc---CCCEEEEEecCCCe
Q 048181          156 FTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-----SQVTVLLRN-----LTGPAGVAISV---DSSFLLVSEFTGNR  222 (310)
Q Consensus       156 vtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-----g~~~~~~~~-----l~~pnGIa~~~---dg~~Lyv~d~~~~~  222 (310)
                      +||....   .    .+.-...+|+.+|+-...     ........+     .....||++++   ||++||+.-..+.+
T Consensus        82 ItD~~~~---g----lIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~  154 (287)
T PF03022_consen   82 ITDSGGP---G----LIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRK  154 (287)
T ss_dssp             EEETTTC---E----EEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SE
T ss_pred             EeCCCcC---c----EEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCc
Confidence            9998742   0    011111233444432100     000011111     12357899987   88999999999999


Q ss_pred             EEEEEec---CCCCCcee-------e-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCC-----cEE
Q 048181          223 TLKYWLR---GPRANSFD-------I-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFG-----AVL  286 (310)
Q Consensus       223 I~~~~~~---~~~~g~~~-------~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G-----~~~  286 (310)
                      +++++.+   .+......       . ..-++..+|+++|+  +|+||.+.....        .|.++++++     +..
T Consensus       155 ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~--~G~ly~~~~~~~--------aI~~w~~~~~~~~~~~~  224 (287)
T PF03022_consen  155 LYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP--NGNLYFTDVEQN--------AIGCWDPDGPYTPENFE  224 (287)
T ss_dssp             EEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET--TTEEEEEECCCT--------EEEEEETTTSB-GCCEE
T ss_pred             EEEEEHHHhhCccccccccccccceeccccCCCCceEEECC--CCcEEEecCCCC--------eEEEEeCCCCcCccchh
Confidence            9999854   11111111       1 11123469999999  999999998874        899999998     566


Q ss_pred             EEEecCC
Q 048181          287 DTISFEA  293 (310)
Q Consensus       287 ~~~~~p~  293 (310)
                      ..+.+|.
T Consensus       225 ~l~~d~~  231 (287)
T PF03022_consen  225 ILAQDPR  231 (287)
T ss_dssp             EEEE-CC
T ss_pred             eeEEcCc
Confidence            6666665

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.04  E-value=3.4e-08  Score=100.31  Aligned_cols=217  Identities=16%  Similarity=0.197  Sum_probs=136.8

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      +|..|-.+|..+||.||+-|.  +-|+|+.++|..+++...+.                ....+-.=||+++-+|.|||+
T Consensus       363 ~L~aPvala~a~DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~----------------t~~sh~Yy~AvsPvdgtlyvS  424 (1899)
T KOG4659|consen  363 SLFAPVALAYAPDGSLIVGDF--NYIRRISQDGQVSTILTLGL----------------TDTSHSYYIAVSPVDGTLYVS  424 (1899)
T ss_pred             eeeceeeEEEcCCCcEEEccc--hheeeecCCCceEEEEEecC----------------CCccceeEEEecCcCceEEec
Confidence            455788899999999766653  47999999988776543221                122344579999889999999


Q ss_pred             eCCC-cEEEEeC-CC----CeEEEeecc----------C-C-----CccccCccceEEeCCCCeEEEEcCCCccCcccee
Q 048181          112 DAYS-GLLVVGP-NG----RLATQLATG----------A-E-----GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIV  169 (310)
Q Consensus       112 d~~~-gi~~id~-~~----~~~~~~~~~----------~-~-----g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~  169 (310)
                      |... .|+++.. ..    +..+.++..          . +     ...+.+|-|+++|. +|.+||.|....       
T Consensus       425 dp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD~t~I-------  496 (1899)
T KOG4659|consen  425 DPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFADGTRI-------  496 (1899)
T ss_pred             CCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEecccEE-------
Confidence            9764 5888842 11    112333321          0 1     13689999999999 699999997641       


Q ss_pred             EeeeecCCCceEEEEcCC----------CCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC---CCce
Q 048181          170 KLNITNDSTGRLLSYNPR----------SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR---ANSF  236 (310)
Q Consensus       170 ~~~~~~~~~G~l~~~d~~----------~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~---~g~~  236 (310)
                         -..+.+|-+--+-..          .+..+...-.+.+|..+|++|=.+.|||-|+  +.|++++.+..-   +|..
T Consensus       497 ---R~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP  571 (1899)
T KOG4659|consen  497 ---RVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRP  571 (1899)
T ss_pred             ---EEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCc
Confidence               011222322222110          0111111224679999999997778999875  566666654320   1111


Q ss_pred             eeecCC---------------CCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEE
Q 048181          237 DIINFQ---------------AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVL  286 (310)
Q Consensus       237 ~~~~l~---------------g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~  286 (310)
                      ....++               -.|..|++..  +|.|||++...+.     --+|.++..||++.
T Consensus       572 ~hC~~a~~t~~~skla~H~tl~~~r~Iavg~--~G~lyvaEsD~rr-----iNrvr~~~tdg~i~  629 (1899)
T KOG4659|consen  572 THCDLANATSSASKLADHRTLLIQRDIAVGT--DGALYVAESDGRR-----INRVRKLSTDGTIS  629 (1899)
T ss_pred             cccccCCCchhhhhhhhhhhhhhhhceeecC--CceEEEEeccchh-----hhheEEeccCceEE
Confidence            101111               2478899999  9999999998751     24688889999643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.01  E-value=5.6e-07  Score=80.42  Aligned_cols=172  Identities=14%  Similarity=0.162  Sum_probs=103.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCC
Q 048181           45 GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS-GLLVVGPN  123 (310)
Q Consensus        45 G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~  123 (310)
                      +++|++...++.|..++.+++......                   .....|.++++++.+..+|++.... .|..+|.+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-------------------~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTF-------------------PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEE-------------------ECCCCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            356777778899999987643221110                   1123467899974334577776543 48888988


Q ss_pred             CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCce
Q 048181          124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG  203 (310)
Q Consensus       124 ~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnG  203 (310)
                      +++.......  +   ..+..+++++++..+|++...                 ++.+..+|..+++.......-..|++
T Consensus        62 ~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~  119 (300)
T TIGR03866        62 TGEVIGTLPS--G---PDPELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEG  119 (300)
T ss_pred             CCcEEEeccC--C---CCccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcce
Confidence            7654332111  1   124678899853457776532                 35788888876544332332345899


Q ss_pred             eEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEEE
Q 048181          204 VAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEAA  262 (310)
Q Consensus       204 Ia~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va~  262 (310)
                      ++++|||+.++++......++.++...   +.... ......|..+++++  +|. ||++.
T Consensus       120 ~~~~~dg~~l~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~  175 (300)
T TIGR03866       120 MAVSPDGKIVVNTSETTNMAHFIDTKT---YEIVDNVLVDQRPRFAEFTA--DGKELWVSS  175 (300)
T ss_pred             EEECCCCCEEEEEecCCCeEEEEeCCC---CeEEEEEEcCCCccEEEECC--CCCEEEEEc
Confidence            999999997777765555666666542   22211 11234577889998  886 45553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.01  E-value=5.4e-07  Score=81.13  Aligned_cols=226  Identities=15%  Similarity=0.104  Sum_probs=134.3

Q ss_pred             CCcceEEEccCCCEEEEEeCC-CeEEEE--ECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVAD-GRILKY--QAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~-g~I~r~--~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      ..|.-+++|++|+.+|+.... |.|..+  ..+|..........      -.|++ .........++-..+++....|++
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~------h~g~~-p~~rQ~~~h~H~a~~tP~~~~l~v  161 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK------HTGSG-PHERQESPHVHSANFTPDGRYLVV  161 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee------cCCCC-CCccccCCccceeeeCCCCCEEEE
Confidence            356889999999888887654 444433  33443321100000      01111 011112234556667644447888


Q ss_pred             EeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          111 ADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       111 ad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      +|-+. .|..++.+.|..+.. ....-++-..|..|+++|+.--.|+..--               ...=.++.|++..+
T Consensus       162 ~DLG~Dri~~y~~~dg~L~~~-~~~~v~~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~~y~~~~g  225 (346)
T COG2706         162 PDLGTDRIFLYDLDDGKLTPA-DPAEVKPGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVLEYNPAVG  225 (346)
T ss_pred             eecCCceEEEEEcccCccccc-cccccCCCCCcceEEEcCCCcEEEEEecc---------------CCEEEEEEEcCCCc
Confidence            88764 587777776665433 22112444668899999953345655421               11123566676556


Q ss_pred             eEEEee------cCC---CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecC--CC-CCceeeeCCCCCC
Q 048181          190 QVTVLL------RNL---TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF--QA-KPHNIKRNPGLLQ  256 (310)
Q Consensus       190 ~~~~~~------~~l---~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l--~g-~Pdgl~~d~~~dG  256 (310)
                      +++.+.      +.+   .+.-.|.+++||++||+++-.-+.|+.|.++. ..|..++ ...  .| .|..+.+++  .|
T Consensus       226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~-~~g~L~~~~~~~teg~~PR~F~i~~--~g  302 (346)
T COG2706         226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP-DGGKLELVGITPTEGQFPRDFNINP--SG  302 (346)
T ss_pred             eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC-CCCEEEEEEEeccCCcCCccceeCC--CC
Confidence            665543      223   34457899999999999999999999999874 3455555 222  23 499999999  99


Q ss_pred             cEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEe
Q 048181          257 TFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTIS  290 (310)
Q Consensus       257 ~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~  290 (310)
                      ++.++.....+     .-.+.+.|+ .|++-..-.
T Consensus       303 ~~Liaa~q~sd-----~i~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         303 RFLIAANQKSD-----NITVFERDKETGRLTLLGR  332 (346)
T ss_pred             CEEEEEccCCC-----cEEEEEEcCCCceEEeccc
Confidence            87766655431     245777776 477554433

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.01  E-value=6.5e-08  Score=91.96  Aligned_cols=189  Identities=19%  Similarity=0.174  Sum_probs=112.8

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      ++.-.+...|..|.+|++.+||++|++....|+|++++++++.. .+... +.           .......+.+.||+++
T Consensus        20 f~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l-~~-----------v~~~~ge~GLlglal~   87 (454)
T TIGR03606        20 FDKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTL-PE-----------IVNDAQHNGLLGLALH   87 (454)
T ss_pred             cEEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecC-Cc-----------eeccCCCCceeeEEEC
Confidence            33334456799999999999999887776679999998765432 22110 00           0000124568899997


Q ss_pred             c------CCCeEEEEeC----------CCcEEEEeCC--CCe---EEEeeccCCCccccCccceEEeCCCCeEEEEcCCC
Q 048181          103 Y------ATRQLYIADA----------YSGLLVVGPN--GRL---ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASG  161 (310)
Q Consensus       103 ~------~~g~LyVad~----------~~gi~~id~~--~~~---~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~  161 (310)
                      +      .++.|||+-.          ...|.++..+  +..   .+.+....+.....+-..|++++ +|.|||+--..
T Consensus        88 PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~  166 (454)
T TIGR03606        88 PDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQ  166 (454)
T ss_pred             CCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCC
Confidence            3      3467999731          2347776543  111   12333322222223445789999 59999976443


Q ss_pred             ccC-------cccee-----Eee---eecCCCceEEEEcCCCC-----------eEEEeecCCCCCceeEEccCCCEEEE
Q 048181          162 VYD-------FRTIV-----KLN---ITNDSTGRLLSYNPRSS-----------QVTVLLRNLTGPAGVAISVDSSFLLV  215 (310)
Q Consensus       162 ~~~-------~~~~~-----~~~---~~~~~~G~l~~~d~~~g-----------~~~~~~~~l~~pnGIa~~~dg~~Lyv  215 (310)
                      ...       ...-.     .+.   -.....|+|+|++++..           ..++..-++..|.|++|+|+|+ ||+
T Consensus       167 g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~  245 (454)
T TIGR03606       167 GRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYA  245 (454)
T ss_pred             CCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEE
Confidence            110       00000     000   01124689999998732           1356677899999999999875 999


Q ss_pred             EecCC---CeEEEE
Q 048181          216 SEFTG---NRTLKY  226 (310)
Q Consensus       216 ~d~~~---~~I~~~  226 (310)
                      +|-..   .+|.++
T Consensus       246 ~e~Gp~~~DEiN~I  259 (454)
T TIGR03606       246 SEQGPNSDDELNII  259 (454)
T ss_pred             EecCCCCCcEEEEe
Confidence            99755   345544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.98  E-value=9.2e-09  Score=100.42  Aligned_cols=159  Identities=16%  Similarity=0.152  Sum_probs=119.3

Q ss_pred             CCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           32 KAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        32 ~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      .|..|||||+|.- .++||+|....+|-....+|+.+.+.+                  ...+-+|.+|++|+-.|+||.
T Consensus      1066 ~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf------------------~tdLVNPR~iv~D~~rgnLYw 1127 (1289)
T KOG1214|consen 1066 GLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLF------------------YTDLVNPRAIVVDPIRGNLYW 1127 (1289)
T ss_pred             cCCCccceeeeeccceeeeeccccchhheeecCCceeeEEE------------------eecccCcceEEeecccCceee
Confidence            6789999999975 479999999999988888877543332                  134568999999988999999


Q ss_pred             EeCCCc---EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          111 ADAYSG---LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       111 ad~~~g---i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      +|+.+.   |-+.++++...+.+...    .+..|||+.+||-...|-+.|.++                 .++--+.++
T Consensus      1128 tDWnRenPkIets~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAGt-----------------~rleC~~p~ 1186 (1289)
T KOG1214|consen 1128 TDWNRENPKIETSSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAGT-----------------KRLECTLPD 1186 (1289)
T ss_pred             ccccccCCcceeeccCCccceEEeec----ccCCCCCceeCcccceeeEEecCC-----------------cceeEecCC
Confidence            998753   77778777555555543    355799999999645566777654                 355555554


Q ss_pred             CCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181          188 SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       188 ~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      .-..+++..+|.+|-+|.-..|  .+|.+|+..++|..++..+.
T Consensus      1187 g~gRR~i~~~LqYPF~itsy~~--~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1187 GTGRRVIQNNLQYPFSITSYAD--HFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred             CCcchhhhhcccCceeeeeccc--cceeeccccCceEEeecccc
Confidence            3334556789999999977654  59999999999999887654

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.95  E-value=3.3e-09  Score=77.67  Aligned_cols=83  Identities=18%  Similarity=0.211  Sum_probs=61.3

Q ss_pred             cceEEeCCCCeEEEEcCCCccCc-cceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC
Q 048181          143 DGLDVDQGTGVVYFTDASGVYDF-RTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN  221 (310)
Q Consensus       143 ndvavd~~~G~lyvtd~~~~~~~-~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~  221 (310)
                      ||++.-. ..++|+|+.+.-... .... +.....+-|.++.||+  ++.+.+++++.+||||++|||+++|||++...+
T Consensus         1 NDIvavG-~~sFy~TNDhyf~~~~l~~l-E~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~   76 (86)
T PF01731_consen    1 NDIVAVG-PDSFYVTNDHYFTDPFLRLL-ETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAH   76 (86)
T ss_pred             CCEEEEC-cCcEEEECchhhCcHHHHHH-HHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence            5666555 379999987542110 0111 1122345688999997  468889999999999999999999999999999


Q ss_pred             eEEEEEec
Q 048181          222 RTLKYWLR  229 (310)
Q Consensus       222 ~I~~~~~~  229 (310)
                      .|.+|...
T Consensus        77 ~I~vy~~~   84 (86)
T PF01731_consen   77 SIHVYKRH   84 (86)
T ss_pred             eEEEEEec
Confidence            99999764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.92  E-value=2.3e-06  Score=77.17  Aligned_cols=220  Identities=10%  Similarity=0.096  Sum_probs=128.9

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeC---CCeEE--EEECC-CceEEeeeecCCCCccccCCCccccCCCCCCce
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVA---DGRIL--KYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT   96 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~---~g~I~--r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P   96 (310)
                      .+..+++-..+..|.-|+++++++.+|+-..   .|+|-  +++++ |..+.+..                 .......|
T Consensus        29 ~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-----------------~~~~g~~p   91 (346)
T COG2706          29 ELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-----------------QTLPGSPP   91 (346)
T ss_pred             ccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-----------------cccCCCCC
Confidence            3334444456678999999999976777653   45554  56665 43432210                 01122345


Q ss_pred             eeEEEecCCC-eEEEEeCCCc---EEEEeCCCCeEEEeec----cCCC----ccccCccceEEeCCCCeEEEEcCCCccC
Q 048181           97 FGLALHYATR-QLYIADAYSG---LLVVGPNGRLATQLAT----GAEG----QAFHFLDGLDVDQGTGVVYFTDASGVYD  164 (310)
Q Consensus        97 ~Gla~d~~~g-~LyVad~~~g---i~~id~~~~~~~~~~~----~~~g----~~~~~pndvavd~~~G~lyvtd~~~~~~  164 (310)
                      .-+++| ++| .||+|+...+   ++.+..+ |.+.....    ...+    +.-..+.-..++|++..|++.|-+.   
T Consensus        92 ~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~---  166 (346)
T COG2706          92 CYVSVD-EDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT---  166 (346)
T ss_pred             eEEEEC-CCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC---
Confidence            789998 566 5777887766   3333333 34332211    1111    1122356677888533666777543   


Q ss_pred             ccceeEeeeecCCCceEEEEcCCCCeEEEee----cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--
Q 048181          165 FRTIVKLNITNDSTGRLLSYNPRSSQVTVLL----RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--  238 (310)
Q Consensus       165 ~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~----~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--  238 (310)
                                    -+++.|+.+.|.++...    ..-..|.=|+|+|+|+..|+..--+++|.++.++.. .|+.+.  
T Consensus       167 --------------Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ  231 (346)
T COG2706         167 --------------DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQ  231 (346)
T ss_pred             --------------ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEee
Confidence                          24544444445544322    344689999999999999999999999999988863 455432  


Q ss_pred             --ecCC----C--CCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECCCCcEEE
Q 048181          239 --INFQ----A--KPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAFGAVLD  287 (310)
Q Consensus       239 --~~l~----g--~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~G~~~~  287 (310)
                        ..+|    +  ....|.+++  ||+ ||++..+..+      -.+.++||+|..++
T Consensus       232 ~i~tlP~dF~g~~~~aaIhis~--dGrFLYasNRg~ds------I~~f~V~~~~g~L~  281 (346)
T COG2706         232 TIDTLPEDFTGTNWAAAIHISP--DGRFLYASNRGHDS------IAVFSVDPDGGKLE  281 (346)
T ss_pred             eeccCccccCCCCceeEEEECC--CCCEEEEecCCCCe------EEEEEEcCCCCEEE
Confidence              2333    2  234588999  996 5666655431      23455666644333

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.86  E-value=7.4e-07  Score=78.43  Aligned_cols=164  Identities=17%  Similarity=0.236  Sum_probs=110.8

Q ss_pred             cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc--eEEeeeecCCCCccccCCCccccCCCCCCceeeE
Q 048181           22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG--FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGL   99 (310)
Q Consensus        22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gl   99 (310)
                      ...++.++|.++ ..||+++- ++.+|-..-.++..+.++++.=  ..++.                     ..+.-.||
T Consensus        79 ~~~~~~~l~~~~-FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~---------------------y~~EGWGL  135 (264)
T PF05096_consen   79 KVLQSVPLPPRY-FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFP---------------------YPGEGWGL  135 (264)
T ss_dssp             SEEEEEE-TTT---EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE----------------------SSS--EE
T ss_pred             cEEEEEECCccc-cceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEe---------------------cCCcceEE
Confidence            345677888664 78999987 4578888889999999999742  12222                     12356799


Q ss_pred             EEecCCCeEEEEeCCCcEEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          100 ALHYATRQLYIADAYSGLLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       100 a~d~~~g~LyVad~~~gi~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      +.|  +..||++|+...|+.+||++-+. ..+.-...+.+....|-+..-  +|.||..-...                 
T Consensus       136 t~d--g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~t-----------------  194 (264)
T PF05096_consen  136 TSD--GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQT-----------------  194 (264)
T ss_dssp             EEC--SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTS-----------------
T ss_pred             EcC--CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCC-----------------
Confidence            974  77899999988899999987433 223222456788999999988  59999865432                 


Q ss_pred             ceEEEEcCCCCeEEEeec-----------C-----CCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          179 GRLLSYNPRSSQVTVLLR-----------N-----LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~~-----------~-----l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      -.|.++||.+|++.-..+           .     ...-||||++|+++.+||+-..=.+++++.+.
T Consensus       195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence            479999999999876542           0     23469999999999999997766778877664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.85  E-value=3.3e-08  Score=90.17  Aligned_cols=148  Identities=17%  Similarity=0.272  Sum_probs=100.9

Q ss_pred             CCCCcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           32 KAFGGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        32 ~~~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      ...+|-||+++..| +||++|-.- .+++++++++..+....       ..+|       ......+++.++ ++|.+|.
T Consensus       113 ~CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~-------~~~G-------~~~kf~N~ldI~-~~g~vyF  176 (376)
T KOG1520|consen  113 LCGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLAD-------EAEG-------KPFKFLNDLDID-PEGVVYF  176 (376)
T ss_pred             ccCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccc-------cccC-------eeeeecCceeEc-CCCeEEE
Confidence            33479999999987 888777654 49999999876322110       0011       122345689998 5999999


Q ss_pred             EeCCC------------------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181          111 ADAYS------------------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus       111 ad~~~------------------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      +|...                  +++++|+.+...+++..     .+.+|||++++++...+.++.+..           
T Consensus       177 TDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~sfvl~~Et~~-----------  240 (376)
T KOG1520|consen  177 TDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGSFVLVAETTT-----------  240 (376)
T ss_pred             eccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCCEEEEEeecc-----------
Confidence            98521                  37788877755545432     478999999999755666666543           


Q ss_pred             eecCCCceEEEEc---CCCCeEEEeecCCC-CCceeEEccCCCEEEEEec
Q 048181          173 ITNDSTGRLLSYN---PRSSQVTVLLRNLT-GPAGVAISVDSSFLLVSEF  218 (310)
Q Consensus       173 ~~~~~~G~l~~~d---~~~g~~~~~~~~l~-~pnGIa~~~dg~~Lyv~d~  218 (310)
                            .++.||-   ++.|+.++++++++ +|+.|-.+++|. +||+-.
T Consensus       241 ------~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal~  283 (376)
T KOG1520|consen  241 ------ARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVALH  283 (376)
T ss_pred             ------ceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCC-EEEEEe
Confidence                  3555554   33455588888665 899999999997 677653

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.82  E-value=1.4e-06  Score=78.90  Aligned_cols=197  Identities=18%  Similarity=0.261  Sum_probs=113.8

Q ss_pred             cceEEEccCCCEEEEEeCC------------CeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           36 GESIAFEPVGGAFYTGVAD------------GRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~------------g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      ..++.+|+.|+||++|...            -+|+.++.....  .++.++.              .........+.|++
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~--------------~~~~~~s~lndl~V   68 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPP--------------DIAPPDSFLNDLVV   68 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--C--------------CCS-TCGGEEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECCh--------------HHcccccccceEEE
Confidence            4578999999999999642            489999988543  2333211              12234456778999


Q ss_pred             ecCC-----CeEEEEeCC-CcEEEEeCCCCeEEEeeccC------------CCccccC---ccceEEeC---CCCeEEEE
Q 048181          102 HYAT-----RQLYIADAY-SGLLVVGPNGRLATQLATGA------------EGQAFHF---LDGLDVDQ---GTGVVYFT  157 (310)
Q Consensus       102 d~~~-----g~LyVad~~-~gi~~id~~~~~~~~~~~~~------------~g~~~~~---pndvavd~---~~G~lyvt  157 (310)
                      |..+     +.+|++|.. .+|+++|..+++...+....            .|..+..   ..+++.++   ++..||+.
T Consensus        69 D~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~  148 (287)
T PF03022_consen   69 DVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFH  148 (287)
T ss_dssp             ECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEE
T ss_pred             EccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEE
Confidence            8533     579999987 46999999998876654321            1112222   23344443   22345554


Q ss_pred             cCCCccCccceeEeeeecCCCceEEEEcC------CC-------CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEE
Q 048181          158 DASGVYDFRTIVKLNITNDSTGRLLSYNP------RS-------SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTL  224 (310)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~G~l~~~d~------~~-------g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~  224 (310)
                      -.+.                 .++|++..      ..       .+++.+.+......|+++|++|. ||+++...+.|.
T Consensus       149 ~lss-----------------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~  210 (287)
T PF03022_consen  149 PLSS-----------------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIG  210 (287)
T ss_dssp             ETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEE
T ss_pred             eCCC-----------------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEE
Confidence            3321                 23555421      00       12233333334678999999885 999999999999


Q ss_pred             EEEecCCCC-Cceee----ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          225 KYWLRGPRA-NSFDI----INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       225 ~~~~~~~~~-g~~~~----~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      +++.+++.. ...++    ...--.||++.++.+.+|.||+....
T Consensus       211 ~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  211 CWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             EEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence            999876422 12232    22124799999997446899998754

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.77  E-value=1.2e-05  Score=74.36  Aligned_cols=216  Identities=10%  Similarity=-0.000  Sum_probs=115.9

Q ss_pred             cceEEEeCCCC-----CCCcceEEEccCCCEEEEEe--CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCC
Q 048181           22 PTFTKILFPPK-----AFGGESIAFEPVGGAFYTGV--ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICR   94 (310)
Q Consensus        22 ~~~~~~~~~~~-----~~~Pegia~d~~G~l~~~d~--~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   94 (310)
                      ..+.+|++|.+     ...|+.+++.+||+.+|+..  .+..+..+|...+...-..                   +...
T Consensus        88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei-------------------~vp~  148 (352)
T TIGR02658        88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM-------------------DVPD  148 (352)
T ss_pred             cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE-------------------eCCC
Confidence            34556777754     34555999999998777654  3788989998754322110                   1111


Q ss_pred             ceeeEEEecCCCeEEE-EeCCCcEEEEeCCCCeEEEeecc-CC---CccccCccceEEeC-CCCeEEEEcCCCccCccce
Q 048181           95 RTFGLALHYATRQLYI-ADAYSGLLVVGPNGRLATQLATG-AE---GQAFHFLDGLDVDQ-GTGVVYFTDASGVYDFRTI  168 (310)
Q Consensus        95 ~P~Gla~d~~~g~LyV-ad~~~gi~~id~~~~~~~~~~~~-~~---g~~~~~pndvavd~-~~G~lyvtd~~~~~~~~~~  168 (310)
                      -+...... .+..... .|.....+.++.++. ...-... ++   ..-+..|   .+.+ ++..+|+|..         
T Consensus       149 ~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~-~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e---------  214 (352)
T TIGR02658       149 CYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGN-PKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT---------  214 (352)
T ss_pred             CcEEEEec-CCccEEEeecCceEEEEecCCCc-eEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC---------
Confidence            12222222 2233322 233332334444432 2111111 11   1123344   2233 3345555532         


Q ss_pred             eEeeeecCCCceEEEEcCCCCeEEEe--ec----C----CCCCce---eEEccCCCEEEEEe---------cCCCeEEEE
Q 048181          169 VKLNITNDSTGRLLSYNPRSSQVTVL--LR----N----LTGPAG---VAISVDSSFLLVSE---------FTGNRTLKY  226 (310)
Q Consensus       169 ~~~~~~~~~~G~l~~~d~~~g~~~~~--~~----~----l~~pnG---Ia~~~dg~~Lyv~d---------~~~~~I~~~  226 (310)
                                |.|+.+|..+..+...  +.    .    --.|-|   +++++||++|||+.         ...++|+.+
T Consensus       215 ----------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi  284 (352)
T TIGR02658       215 ----------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV  284 (352)
T ss_pred             ----------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence                      6777777432211111  11    0    113555   99999999999953         233689999


Q ss_pred             EecCCCCCceee-ecCCCCCceeeeCCCCCCc--EEEEEecCCCCCCCCceeeEEECC-CCcEEEEE-ecCC
Q 048181          227 WLRGPRANSFDI-INFQAKPHNIKRNPGLLQT--FWEAAIITRQPAGTPVPIGQRISA-FGAVLDTI-SFEA  293 (310)
Q Consensus       227 ~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~--l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~-~~p~  293 (310)
                      |...   ++..- ..+...|.+|++++  ||.  ||++....        ..|..+|. .++++..+ .+..
T Consensus       285 D~~t---~kvi~~i~vG~~~~~iavS~--Dgkp~lyvtn~~s--------~~VsViD~~t~k~i~~i~~vg~  343 (352)
T TIGR02658       285 DAKT---GKRLRKIELGHEIDSINVSQ--DAKPLLYALSTGD--------KTLYIFDAETGKELSSVNQLGR  343 (352)
T ss_pred             ECCC---CeEEEEEeCCCceeeEEECC--CCCeEEEEeCCCC--------CcEEEEECcCCeEEeeeccCCC
Confidence            8753   22211 22334699999999  997  46666544        25888885 68899998 5553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.76  E-value=1.4e-06  Score=76.76  Aligned_cols=175  Identities=19%  Similarity=0.169  Sum_probs=92.0

Q ss_pred             cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECC--CceEEeeeecCCCCccccCCCccccCC-CCCCceee
Q 048181           22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAP--DGFTDFAFTTPTRSKAVCDGTTNLDLG-PICRRTFG   98 (310)
Q Consensus        22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~--g~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~P~G   98 (310)
                      ..++++++.+ +.-||||++-.+|.+++++-..++++.+..+  ++....+.. .    . .    ..... .....--|
T Consensus        54 ~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~-~----~-~----~l~~~~~~N~G~EG  122 (248)
T PF06977_consen   54 KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADV-Q----K-I----SLGFPNKGNKGFEG  122 (248)
T ss_dssp             -EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEE-E----E-E----E---S---SS--EE
T ss_pred             CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhc-e----E-E----ecccccCCCcceEE
Confidence            4578888885 6789999999888766667678888877653  221110000 0    0 0    00000 11222459


Q ss_pred             EEEecCCCeEEEEeCC--CcEEEEeC--CCCeEEEeec-cC--CCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181           99 LALHYATRQLYIADAY--SGLLVVGP--NGRLATQLAT-GA--EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus        99 la~d~~~g~LyVad~~--~gi~~id~--~~~~~~~~~~-~~--~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~  171 (310)
                      |++|+.+++||++.-.  .+|+.++.  .......... ..  ....+.-|.+++++|++|.+|+-....          
T Consensus       123 la~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es----------  192 (248)
T PF06977_consen  123 LAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES----------  192 (248)
T ss_dssp             EEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT----------
T ss_pred             EEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC----------
Confidence            9999888999998533  24788875  2222221111 11  122345588999999999999864332          


Q ss_pred             eeecCCCceEEEEcCCCCeEEEe---e-------cCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          172 NITNDSTGRLLSYNPRSSQVTVL---L-------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g~~~~~---~-------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                             ..|..+|.+ |++...   .       ..+..|.|||++++|+ ||++.- .+..++|.
T Consensus       193 -------~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f~  248 (248)
T PF06977_consen  193 -------RLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRFE  248 (248)
T ss_dssp             -------TEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEEE
T ss_pred             -------CeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEeC
Confidence                   356666654 443221   1       2457899999999996 888764 66888773

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.69  E-value=8.3e-06  Score=72.14  Aligned_cols=202  Identities=11%  Similarity=0.141  Sum_probs=123.9

Q ss_pred             CCCCcceEEEccCCCEEEEEe-CCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEPVGGAFYTGV-ADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~-~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ....-.+++|+|+-+.+|+-. .--.|+.++.+|... ++.                   ......|-+|++- .+|...
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-------------------L~g~~DpE~Ieyi-g~n~fv  143 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-------------------LTGFSDPETIEYI-GGNQFV  143 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-------------------ccccCChhHeEEe-cCCEEE
Confidence            334567899999977666654 445788899888753 322                   1235567789984 555555


Q ss_pred             EEeCCCc---EEEEeCCCCeEEE----e-eccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          110 IADAYSG---LLVVGPNGRLATQ----L-ATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       110 Vad~~~g---i~~id~~~~~~~~----~-~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                      ++|...+   ++.+|.++..+..    + ...... .=....|+|-|++++++||.--.               .|- +|
T Consensus       144 i~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k-~N~GfEGlA~d~~~~~l~~aKEr---------------~P~-~I  206 (316)
T COG3204         144 IVDERDRALYLFTVDADTTVISAKVQKIPLGTTNK-KNKGFEGLAWDPVDHRLFVAKER---------------NPI-GI  206 (316)
T ss_pred             EEehhcceEEEEEEcCCccEEeccceEEeccccCC-CCcCceeeecCCCCceEEEEEcc---------------CCc-EE
Confidence            5665543   4556666543211    1 011111 11235799999998999997432               222 35


Q ss_pred             EEEcCCCCeEEEeec-------C--CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--------ecCCCC
Q 048181          182 LSYNPRSSQVTVLLR-------N--LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--------INFQAK  244 (310)
Q Consensus       182 ~~~d~~~g~~~~~~~-------~--l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--------~~l~g~  244 (310)
                      |.++...........       .  +.--.|+.+++..++|+|-.-..++|..++.+|.-.+...+        ..+| .
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip-q  285 (316)
T COG3204         207 FEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP-Q  285 (316)
T ss_pred             EEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-C
Confidence            555422111111000       0  11236899998888899988889999999988753333222        3345 4


Q ss_pred             CceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181          245 PHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       245 Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                      |.|+++|.  +|+||+..-.+         ...+|.++
T Consensus       286 aEGiamDd--~g~lYIvSEPn---------lfy~F~~~  312 (316)
T COG3204         286 AEGIAMDD--DGNLYIVSEPN---------LFYRFTPQ  312 (316)
T ss_pred             cceeEECC--CCCEEEEecCC---------cceecccC
Confidence            89999999  99999987765         46777765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=2e-05  Score=75.82  Aligned_cols=205  Identities=13%  Similarity=0.064  Sum_probs=119.4

Q ss_pred             eEEEccCCC-EEEEEeCC--CeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-e
Q 048181           38 SIAFEPVGG-AFYTGVAD--GRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-D  112 (310)
Q Consensus        38 gia~d~~G~-l~~~d~~~--g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d  112 (310)
                      ++.|.|||+ ++|+...+  .+|+.++..++. +.+..                    ..+.....++.++...|+++ +
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~--------------------~~g~~~~~~wSPDG~~La~~~~  281 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS--------------------FPGINGAPRFSPDGKKLALVLS  281 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC--------------------CCCCcCCeeECCCCCEEEEEEe
Confidence            679999986 56665433  468888877543 22210                    00111235676333346654 2


Q ss_pred             CC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          113 AY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       113 ~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      ..  ..|+.+|.++++.+.+....     ......++++++..|+++-...               ....||++|.++++
T Consensus       282 ~~g~~~Iy~~dl~tg~~~~lt~~~-----~~~~~p~wSpDG~~I~f~s~~~---------------g~~~Iy~~dl~~g~  341 (448)
T PRK04792        282 KDGQPEIYVVDIATKALTRITRHR-----AIDTEPSWHPDGKSLIFTSERG---------------GKPQIYRVNLASGK  341 (448)
T ss_pred             CCCCeEEEEEECCCCCeEECccCC-----CCccceEECCCCCEEEEEECCC---------------CCceEEEEECCCCC
Confidence            22  24999999888766553211     1223567888534566653211               22469999988787


Q ss_pred             EEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEEEecCC
Q 048181          191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEAAIITR  266 (310)
Q Consensus       191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va~~~~~  266 (310)
                      .+.+........+.+++|||++|+++....  .+|+++++++.   .... ..- ..-....+.+  ||. |+.+....+
T Consensus       342 ~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g---~~~~lt~~-~~d~~ps~sp--dG~~I~~~~~~~g  415 (448)
T PRK04792        342 VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG---AMQVLTST-RLDESPSVAP--NGTMVIYSTTYQG  415 (448)
T ss_pred             EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC---CeEEccCC-CCCCCceECC--CCCEEEEEEecCC
Confidence            766542223345679999999998876543  36888887653   3322 111 1111236777  885 444333322


Q ss_pred             CCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          267 QPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       267 ~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                            ...+..++.+|+....+..+.+
T Consensus       416 ------~~~l~~~~~~G~~~~~l~~~~g  437 (448)
T PRK04792        416 ------KQVLAAVSIDGRFKARLPAGQG  437 (448)
T ss_pred             ------ceEEEEEECCCCceEECcCCCC
Confidence                  1357778899998888877655

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.61  E-value=1.5e-06  Score=80.41  Aligned_cols=121  Identities=14%  Similarity=0.094  Sum_probs=90.2

Q ss_pred             CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec---------CCC
Q 048181          151 TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF---------TGN  221 (310)
Q Consensus       151 ~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~---------~~~  221 (310)
                      ..++||+|....             ...++++.+|.+++++.-.++.-..|+|+ ++|||+.||++++         ...
T Consensus        12 ~~~v~V~d~~~~-------------~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d   77 (352)
T TIGR02658        12 ARRVYVLDPGHF-------------AATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTD   77 (352)
T ss_pred             CCEEEEECCccc-------------ccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCC
Confidence            368999997531             11378999999988887777777899997 9999999999999         888


Q ss_pred             eEEEEEecCCCCCceeeecCCC--------CCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEec
Q 048181          222 RTLKYWLRGPRANSFDIINFQA--------KPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISF  291 (310)
Q Consensus       222 ~I~~~~~~~~~~g~~~~~~l~g--------~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~  291 (310)
                      .|..||...-+ -..+ ..+|.        .|..+++++  ||+ |||+.....       ..|-++| +.++++..+..
T Consensus        78 ~V~v~D~~t~~-~~~~-i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~-------~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658        78 YVEVIDPQTHL-PIAD-IELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPS-------PAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             EEEEEECccCc-EEeE-EccCCCchhhccCccceEEECC--CCCEEEEecCCCC-------CEEEEEECCCCcEEEEEeC
Confidence            99999875321 1111 12222        355999999  995 899876632       3688888 56899999999


Q ss_pred             CCCcc
Q 048181          292 EAQYS  296 (310)
Q Consensus       292 p~~~~  296 (310)
                      |.++.
T Consensus       147 p~~~~  151 (352)
T TIGR02658       147 PDCYH  151 (352)
T ss_pred             CCCcE
Confidence            87753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.61  E-value=4.5e-05  Score=68.42  Aligned_cols=237  Identities=14%  Similarity=0.051  Sum_probs=138.9

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccC--CCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDL--GPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      .|..|.|++.+++ ++++..  ..+|+++........-.  .+.   ..+|.-..+..  ....-.-+.|++  .++++|
T Consensus        47 ~F~r~MGl~~~~~-~l~~~t--~~qiw~f~~~~n~l~~~--~~~---~~~D~~yvPr~~~~TGdidiHdia~--~~~~l~  116 (335)
T TIGR03032        47 TFPRPMGLAVSPQ-SLTLGT--RYQLWRFANVDNLLPAG--QTH---PGYDRLYVPRASYVTGDIDAHDLAL--GAGRLL  116 (335)
T ss_pred             ccCccceeeeeCC-eEEEEE--cceeEEccccccccccc--ccC---CCCCeEEeeeeeeeccCcchhheee--cCCcEE
Confidence            4678999998754 444444  44788872221110000  000   00010000000  111123456777  466777


Q ss_pred             EEeCC-CcEEEEeCCCCeEEE----eeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          110 IADAY-SGLLVVGPNGRLATQ----LATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       110 Vad~~-~gi~~id~~~~~~~~----~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      +.+.. +-+-.+++.-...-.    +.+....+.=-+.||+|+.. +.--|||--+..-....|.    +.+.+|.+. +
T Consensus       117 fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gWR----~~~~~gG~v-i  190 (335)
T TIGR03032       117 FVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGWR----EGRRDGGCV-I  190 (335)
T ss_pred             EEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCccccc----ccccCCeEE-E
Confidence            77654 447778765432211    22222222224689999985 4566777543211111111    122334333 5


Q ss_pred             cCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEe
Q 048181          185 NPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       185 d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                      |..+++  ++.+++.+|.+.-|. ||+ ||++|+.+++|.+++.+   .|..+. ..+||+|.||.+..   ..++|++.
T Consensus       191 dv~s~e--vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~---~G~~e~Va~vpG~~rGL~f~G---~llvVgmS  260 (335)
T TIGR03032       191 DIPSGE--VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQ---AGKFQPVAFLPGFTRGLAFAG---DFAFVGLS  260 (335)
T ss_pred             EeCCCC--EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCC---CCcEEEEEECCCCCcccceeC---CEEEEEec
Confidence            555554  578999999999998 455 99999999999999875   366666 88999999999985   46789988


Q ss_pred             cCCCCC-----C-----CCc-eeeEEEC-CCCcEEEEEecCCC
Q 048181          264 ITRQPA-----G-----TPV-PIGQRIS-AFGAVLDTISFEAQ  294 (310)
Q Consensus       264 ~~~~~~-----~-----~~~-~~v~~~~-~~G~~~~~~~~p~~  294 (310)
                      -.|+.+     |     ... -.+..+| .+|.++..++++..
T Consensus       261 k~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~  303 (335)
T TIGR03032       261 KLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGV  303 (335)
T ss_pred             cccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCc
Confidence            888432     2     122 3356677 57999999998865

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.58  E-value=2.1e-05  Score=73.41  Aligned_cols=185  Identities=15%  Similarity=0.088  Sum_probs=104.5

Q ss_pred             eCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-------EeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181           28 LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-------DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA  100 (310)
Q Consensus        28 ~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla  100 (310)
                      .+...+..|.+++..|+|.+++.....|++..+..++...       .+...+..   ...+..-...+......|.+++
T Consensus        61 ~~a~gLe~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~---Gll~~al~~~fa~~~~~~~~~a  137 (399)
T COG2133          61 VVAQGLEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQG---GLLDIALSPDFAQGRLVYFGIS  137 (399)
T ss_pred             cccccccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCC---CccceEecccccccceeeeEEE
Confidence            4456688999999999996555555548777665432111       01100000   0000001123334456788888


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeE---EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCc--cce---eEee
Q 048181          101 LHYATRQLYIADAYSGLLVVGPNGRLA---TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDF--RTI---VKLN  172 (310)
Q Consensus       101 ~d~~~g~LyVad~~~gi~~id~~~~~~---~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~--~~~---~~~~  172 (310)
                      .  ..+.+|++... .+.+++....+.   ..+....++....+--.|+++|+ |.||||--+.....  ++.   ...+
T Consensus       138 ~--~~~~~~~~n~~-~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pD-G~Lyvs~G~~~~~~~aq~~~~~~Gk~  213 (399)
T COG2133         138 E--PGGGLYVANRV-AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPD-GKLYVTTGSNGDPALAQDNVSLAGKV  213 (399)
T ss_pred             e--ecCCceEEEEE-EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCC-CcEEEEeCCCCCcccccCccccccce
Confidence            8  47778887644 477777221222   22333444333556678999995 99999865431000  000   0001


Q ss_pred             eecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCC
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG  220 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~  220 (310)
                      ++.... .+...|+.+...+++.-++..|.|++|+|....||++|-..
T Consensus       214 ~r~~~a-~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         214 LRIDRA-GIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             eeeccC-cccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence            111122 24445555555667777899999999999955699999877

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.58  E-value=1.3e-05  Score=75.09  Aligned_cols=190  Identities=15%  Similarity=0.168  Sum_probs=111.4

Q ss_pred             CCEEE-EEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCC-eEEEEeCCCcEEE
Q 048181           45 GGAFY-TGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATR-QLYIADAYSGLLV  119 (310)
Q Consensus        45 G~l~~-~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g-~LyVad~~~gi~~  119 (310)
                      +++++ +...++.|.-++.+...  ..+.                     ..+.+ .++++. ++| .+||++....|.+
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~---------------------~~~~~h~~~~~s-~Dgr~~yv~~rdg~vsv   62 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIP---------------------TGGAPHAGLKFS-PDGRYLYVANRDGTVSV   62 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE----------------------STTEEEEEE-T-T-SSEEEEEETTSEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEc---------------------CCCCceeEEEec-CCCCEEEEEcCCCeEEE
Confidence            45554 45568999999987532  2221                     22334 457775 555 5999986656999


Q ss_pred             EeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCC-
Q 048181          120 VGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL-  198 (310)
Q Consensus       120 id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l-  198 (310)
                      ||+.++++..-..  .|   ..|.++++++++..+|+++..                 .+.+..+|..+.++...+... 
T Consensus        63 iD~~~~~~v~~i~--~G---~~~~~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~  120 (369)
T PF02239_consen   63 IDLATGKVVATIK--VG---GNPRGIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGG  120 (369)
T ss_dssp             EETTSSSEEEEEE---S---SEEEEEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--E
T ss_pred             EECCcccEEEEEe--cC---CCcceEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeeccccc
Confidence            9998876422111  12   347899999964457777642                 367888898776554333211 


Q ss_pred             -------CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEE-EEEecCCCC
Q 048181          199 -------TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFW-EAAIITRQP  268 (310)
Q Consensus       199 -------~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~-va~~~~~~~  268 (310)
                             +...+|..++.+...+++-...++||.++++..  .....  .....+|.+..+|+  +|+++ +|.....  
T Consensus       121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--~~~~~~~i~~g~~~~D~~~dp--dgry~~va~~~sn--  194 (369)
T PF02239_consen  121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--KNLKVTTIKVGRFPHDGGFDP--DGRYFLVAANGSN--  194 (369)
T ss_dssp             E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--SCEEEEEEE--TTEEEEEE-T--TSSEEEEEEGGGT--
T ss_pred             ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--cccceeeecccccccccccCc--ccceeeecccccc--
Confidence                   234588888988867777788899999998753  22222  33345799999999  99765 5555442  


Q ss_pred             CCCCceeeEEECC-CCcEEEEEe
Q 048181          269 AGTPVPIGQRISA-FGAVLDTIS  290 (310)
Q Consensus       269 ~~~~~~~v~~~~~-~G~~~~~~~  290 (310)
                            .+..+|. .++.+..+.
T Consensus       195 ------~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  195 ------KIAVIDTKTGKLVALID  211 (369)
T ss_dssp             ------EEEEEETTTTEEEEEEE
T ss_pred             ------eeEEEeeccceEEEEee
Confidence                  4555554 455554443

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=7e-05  Score=71.79  Aligned_cols=204  Identities=15%  Similarity=0.067  Sum_probs=119.2

Q ss_pred             ceEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEE
Q 048181           37 ESIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIA  111 (310)
Q Consensus        37 egia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVa  111 (310)
                      .+++|.|||+ ++|+...  ...|+.++.+++. ..+..                    ..+.....++. ++| +|+++
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~--------------------~~g~~~~~~~S-pDG~~l~~~  265 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS--------------------FRGINGAPSFS-PDGRRLALT  265 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc--------------------CCCCccCceEC-CCCCEEEEE
Confidence            3678999986 6666543  3468888877543 22210                    00111245776 455 46554


Q ss_pred             -eCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          112 -DAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       112 -d~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                       +..  ..|+.+|.++++.+.+.... +    .....++++++..|+++....               ....||.+|..+
T Consensus       266 ~s~~g~~~Iy~~d~~~g~~~~lt~~~-~----~~~~~~~spDG~~l~f~sd~~---------------g~~~iy~~dl~~  325 (433)
T PRK04922        266 LSRDGNPEIYVMDLGSRQLTRLTNHF-G----IDTEPTWAPDGKSIYFTSDRG---------------GRPQIYRVAASG  325 (433)
T ss_pred             EeCCCCceEEEEECCCCCeEECccCC-C----CccceEECCCCCEEEEEECCC---------------CCceEEEEECCC
Confidence             322  24999999888766553211 1    123568888533465543211               123688888776


Q ss_pred             CeEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EE-EEEe
Q 048181          189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FW-EAAI  263 (310)
Q Consensus       189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~-va~~  263 (310)
                      ++.+.+...-.....++++|||+.|+++....  .+|+.+++.+.   .... ..-. ......+++  ||+ |+ .+..
T Consensus       326 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~~-~~~~p~~sp--dG~~i~~~s~~  399 (433)
T PRK04922        326 GSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPGS-LDESPSFAP--NGSMVLYATRE  399 (433)
T ss_pred             CCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCCC-CCCCceECC--CCCEEEEEEec
Confidence            76655443223345789999999988875433  36888887642   2222 1111 223457888  996 33 3333


Q ss_pred             cCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          264 ITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      ..+       ..+..++.+|+....+..+.+
T Consensus       400 ~g~-------~~L~~~~~~g~~~~~l~~~~g  423 (433)
T PRK04922        400 GGR-------GVLAAVSTDGRVRQRLVSADG  423 (433)
T ss_pred             CCc-------eEEEEEECCCCceEEcccCCC
Confidence            222       478889999998888876644

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.52  E-value=1.6e-05  Score=75.79  Aligned_cols=163  Identities=15%  Similarity=0.171  Sum_probs=98.7

Q ss_pred             CCCCceeeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeecc---CCCccccCccceEEeCC------CCeEEEEcCC
Q 048181           91 PICRRTFGLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATG---AEGQAFHFLDGLDVDQG------TGVVYFTDAS  160 (310)
Q Consensus        91 ~~~~~P~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~---~~g~~~~~pndvavd~~------~G~lyvtd~~  160 (310)
                      ..+..|.+|++. ++|+|||+... ..|++++..++..+.+...   ........+-|||++|+      ++.||++-+.
T Consensus        27 ~GL~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~  105 (454)
T TIGR03606        27 SGLNKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY  105 (454)
T ss_pred             CCCCCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence            356789999996 79999999874 4588998766543332211   11112345779999864      3578987532


Q ss_pred             CccCccceeEeeeecCCCceEEEEcCC--CC---eEEEeecCC-----CCCceeEEccCCCEEEEEecC-----------
Q 048181          161 GVYDFRTIVKLNITNDSTGRLLSYNPR--SS---QVTVLLRNL-----TGPAGVAISVDSSFLLVSEFT-----------  219 (310)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~G~l~~~d~~--~g---~~~~~~~~l-----~~pnGIa~~~dg~~Lyv~d~~-----------  219 (310)
                      ..-..        ......+|.|+..+  +.   ..+.+...+     +.-..|+|+|||+ ||++--.           
T Consensus       106 ~~~~~--------~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~  176 (454)
T TIGR03606       106 KNGDK--------ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFL  176 (454)
T ss_pred             cCCCC--------CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccccC
Confidence            10000        00012356665422  11   123333333     3456899999996 9995221           


Q ss_pred             ---------------------CCeEEEEEecCCCC-------C-ceee--ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          220 ---------------------GNRTLKYWLRGPRA-------N-SFDI--INFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       220 ---------------------~~~I~~~~~~~~~~-------g-~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                                           .+.|+|++.+|.-.       + ..++  -++- -|-||++|+  +|.||+++++.+
T Consensus       177 ~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~R-Np~Gla~dp--~G~Lw~~e~Gp~  251 (454)
T TIGR03606       177 PNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHR-NPQGLAFTP--DGTLYASEQGPN  251 (454)
T ss_pred             cchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEecc-ccceeEECC--CCCEEEEecCCC
Confidence                                 23789999886410       0 1233  2332 499999999  999999999985

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=0.0002  Score=68.39  Aligned_cols=205  Identities=14%  Similarity=0.040  Sum_probs=118.1

Q ss_pred             ceEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEE
Q 048181           37 ESIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIA  111 (310)
Q Consensus        37 egia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVa  111 (310)
                      ..+.|.|||+ ++|+...  +..|+.++.+++. +.+.                    ...+.....++. ++| +|+++
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--------------------~~~g~~~~~~~S-pDG~~la~~  260 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--------------------NFEGLNGAPAWS-PDGSKLAFV  260 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--------------------CCCCCcCCeEEC-CCCCEEEEE
Confidence            5678999986 5566543  3468888877543 2221                    001111235676 455 56544


Q ss_pred             eC-C--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          112 DA-Y--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       112 d~-~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      .. .  ..|+.+|.++++.+.+... .+    ......+++++..|+++...               .+...||+++..+
T Consensus       261 ~~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~  320 (430)
T PRK00178        261 LSKDGNPEIYVMDLASRQLSRVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNG  320 (430)
T ss_pred             EccCCCceEEEEECCCCCeEEcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCC
Confidence            22 2  2499999998876655321 11    12345678854457665321               1234689998877


Q ss_pred             CeEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcE-EEEEec
Q 048181          189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTF-WEAAII  264 (310)
Q Consensus       189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l-~va~~~  264 (310)
                      ++.+.+..........+++|||+.|+++....  ..|+.+++++   +..+. ... .......+.+  ||.. +.+...
T Consensus       321 g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t---g~~~~lt~~-~~~~~p~~sp--dg~~i~~~~~~  394 (430)
T PRK00178        321 GRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR---GSVRILTDT-SLDESPSVAP--NGTMLIYATRQ  394 (430)
T ss_pred             CCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC---CCEEEccCC-CCCCCceECC--CCCEEEEEEec
Confidence            77665543222334578999999998876543  3688888764   23332 211 1222347888  8864 333332


Q ss_pred             CCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          265 TRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       265 ~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      .+      ...+..++.+|+....+..+.+
T Consensus       395 ~g------~~~l~~~~~~g~~~~~l~~~~g  418 (430)
T PRK00178        395 QG------RGVLMLVSINGRVRLPLPTAQG  418 (430)
T ss_pred             CC------ceEEEEEECCCCceEECcCCCC
Confidence            21      1467788888887777766654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=0.00037  Score=66.52  Aligned_cols=202  Identities=9%  Similarity=-0.038  Sum_probs=120.6

Q ss_pred             eEEEccCCC--EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEE
Q 048181           38 SIAFEPVGG--AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIA  111 (310)
Q Consensus        38 gia~d~~G~--l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVa  111 (310)
                      .+.|.|||+  +||+...  +..|+.++..++. +.+..                    ..+......+. ++| +|+++
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--------------------~~g~~~~~~~S-PDG~~la~~  250 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--------------------SQGMLVVSDVS-KDGSKLLLT  250 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--------------------CCCcEEeeEEC-CCCCEEEEE
Confidence            678999986  5556654  4679999987553 33320                    01111223465 444 56554


Q ss_pred             eCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          112 DAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       112 d~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ...   ..|+.++.++++.+.+... .+. .   ....++|++..|||+....               ....||++|.++
T Consensus       251 ~~~~g~~~Iy~~dl~~g~~~~LT~~-~~~-d---~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~  310 (419)
T PRK04043        251 MAPKGQPDIYLYDTNTKTLTQITNY-PGI-D---VNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNS  310 (419)
T ss_pred             EccCCCcEEEEEECCCCcEEEcccC-CCc-c---CccEECCCCCEEEEEECCC---------------CCceEEEEECCC
Confidence            332   2499999888876665322 211 1   1236888644788875431               124799999988


Q ss_pred             CeEEEeecCCCCCceeEEccCCCEEEEEecCC--------CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-E
Q 048181          189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--------NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-F  258 (310)
Q Consensus       189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--------~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l  258 (310)
                      ++.+.+...-. .+ ..++|||+.|.++....        .+|+.+++++.   ..+. .. .+.-....+.+  ||. |
T Consensus       311 g~~~rlt~~g~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~-~~~~~~p~~SP--DG~~I  382 (419)
T PRK04043        311 GSVEQVVFHGK-NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTA-NGVNQFPRFSS--DGGSI  382 (419)
T ss_pred             CCeEeCccCCC-cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCC-CCCcCCeEECC--CCCEE
Confidence            88765543211 23 48999999887765433        47898888653   3322 11 11112366888  886 4


Q ss_pred             EEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          259 WEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       259 ~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      +.+.....      ...+..++.+|+....+....|
T Consensus       383 ~f~~~~~~------~~~L~~~~l~g~~~~~l~~~~g  412 (419)
T PRK04043        383 MFIKYLGN------QSALGIIRLNYNKSFLFPLKVG  412 (419)
T ss_pred             EEEEccCC------cEEEEEEecCCCeeEEeecCCC
Confidence            44433322      2468889999998888877655

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=0.00023  Score=68.07  Aligned_cols=204  Identities=15%  Similarity=0.100  Sum_probs=116.6

Q ss_pred             eEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEe
Q 048181           38 SIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIAD  112 (310)
Q Consensus        38 gia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad  112 (310)
                      +++|.|||+ ++|+...  +..|+.++..++. ..+.                    ...+.....++. ++| +|+++.
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------------~~~g~~~~~~~S-PDG~~la~~~  258 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA--------------------NFKGSNSAPAWS-PDGRTLAVAL  258 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee--------------------cCCCCccceEEC-CCCCEEEEEE
Confidence            578999986 5565543  3468888877543 2221                    001122346776 455 565542


Q ss_pred             CC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          113 AY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       113 ~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      ..   ..|+.+|.+++..+.+... .+    ......+++++..|+++....               ..-.||.++..++
T Consensus       259 ~~~g~~~Iy~~d~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~s~~~---------------g~~~Iy~~~~~~g  318 (427)
T PRK02889        259 SRDGNSQIYTVNADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFTSDRG---------------GAPQIYRMPASGG  318 (427)
T ss_pred             ccCCCceEEEEECCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEEecCC---------------CCcEEEEEECCCC
Confidence            22   2499999887766555321 11    123467888533466542211               1236888887666


Q ss_pred             eEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcE-EEEEecC
Q 048181          190 QVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTF-WEAAIIT  265 (310)
Q Consensus       190 ~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l-~va~~~~  265 (310)
                      +.+.+...-......+|+|||++|+++....  .+|+.+++++.   .... ..- ..-....+.+  ||.. +.+....
T Consensus       319 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~~-~~~~~p~~sp--dg~~l~~~~~~~  392 (427)
T PRK02889        319 AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTDT-TRDESPSFAP--NGRYILYATQQG  392 (427)
T ss_pred             ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccCC-CCccCceECC--CCCEEEEEEecC
Confidence            6554432222234578999999887765443  36888887642   2222 111 1234568888  8863 3333322


Q ss_pred             CCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          266 RQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       266 ~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      +      ...+..++.+|+....+..|.|
T Consensus       393 g------~~~l~~~~~~g~~~~~l~~~~g  415 (427)
T PRK02889        393 G------RSVLAAVSSDGRIKQRLSVQGG  415 (427)
T ss_pred             C------CEEEEEEECCCCceEEeecCCC
Confidence            1      1457788899998888887766

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=0.00024  Score=68.10  Aligned_cols=205  Identities=10%  Similarity=0.001  Sum_probs=118.6

Q ss_pred             cceEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEE
Q 048181           36 GESIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYI  110 (310)
Q Consensus        36 Pegia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyV  110 (310)
                      -..++|.|||+ ++|++..  +..|+.++..++. ..+.                    ...+.....++. ++| .|++
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--------------------~~~g~~~~~~~S-PDG~~la~  262 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--------------------NFPGMTFAPRFS-PDGRKVVM  262 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--------------------cCCCcccCcEEC-CCCCEEEE
Confidence            34678999986 6666543  4679888877543 2221                    001112245675 455 4544


Q ss_pred             EeC-C--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          111 ADA-Y--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       111 ad~-~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      +.. .  ..|+.+|.++++.+.+... .+    ......++|++..|+++....               ....||++|.+
T Consensus       263 ~~~~~g~~~Iy~~d~~~~~~~~Lt~~-~~----~~~~~~~spDG~~i~f~s~~~---------------g~~~Iy~~d~~  322 (435)
T PRK05137        263 SLSQGGNTDIYTMDLRSGTTTRLTDS-PA----IDTSPSYSPDGSQIVFESDRS---------------GSPQLYVMNAD  322 (435)
T ss_pred             EEecCCCceEEEEECCCCceEEccCC-CC----ccCceeEcCCCCEEEEEECCC---------------CCCeEEEEECC
Confidence            422 2  3499999988876665321 11    123567888533465543211               12469999987


Q ss_pred             CCeEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcE-EEEEe
Q 048181          188 SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTF-WEAAI  263 (310)
Q Consensus       188 ~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l-~va~~  263 (310)
                      +++.+.+...-..-+..+|+|||+.|+++....  .+|+.+++++.   .... .. ........+.+  ||+. +.+..
T Consensus       323 g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---~~~~lt~-~~~~~~p~~sp--DG~~i~~~~~  396 (435)
T PRK05137        323 GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---GERILTS-GFLVEGPTWAP--NGRVIMFFRQ  396 (435)
T ss_pred             CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---ceEeccC-CCCCCCCeECC--CCCEEEEEEc
Confidence            777766554322335688999999988876433  47888887643   2222 11 11345678888  8863 33333


Q ss_pred             -cCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181          264 -ITRQPAGTPVPIGQRISAFGAVLDTISF  291 (310)
Q Consensus       264 -~~~~~~~~~~~~v~~~~~~G~~~~~~~~  291 (310)
                       ..+.    ....+.+++.+|+....+..
T Consensus       397 ~~~~~----~~~~L~~~dl~g~~~~~l~~  421 (435)
T PRK05137        397 TPGSG----GAPKLYTVDLTGRNEREVPT  421 (435)
T ss_pred             cCCCC----CcceEEEEECCCCceEEccC
Confidence             2210    01368888988876666553

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.41  E-value=0.0006  Score=58.92  Aligned_cols=200  Identities=13%  Similarity=0.106  Sum_probs=121.5

Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC-CC
Q 048181           37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA-YS  115 (310)
Q Consensus        37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~-~~  115 (310)
                      ..+.+.++++.+++...++.|..++..........                  .........+.+. ++++++++.. ..
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~------------------~~~~~~i~~~~~~-~~~~~~~~~~~~~  115 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTL------------------TGHTSYVSSVAFS-PDGRILSSSSRDK  115 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE------------------eccCCcEEEEEEc-CCCCEEEEecCCC
Confidence            48889998877778777899988887643211100                  0112245678886 5567777655 44


Q ss_pred             cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181          116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL  195 (310)
Q Consensus       116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~  195 (310)
                      .+..++..+++......   . .......++++++ +.++++...                 +|.+..+|..+++.....
T Consensus       116 ~i~~~~~~~~~~~~~~~---~-~~~~i~~~~~~~~-~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~  173 (289)
T cd00200         116 TIKVWDVETGKCLTTLR---G-HTDWVNSVAFSPD-GTFVASSSQ-----------------DGTIKLWDLRTGKCVATL  173 (289)
T ss_pred             eEEEEECCCcEEEEEec---c-CCCcEEEEEEcCc-CCEEEEEcC-----------------CCcEEEEEccccccceeE
Confidence            58888877544322222   1 1234678899984 666665431                 356777777654433322


Q ss_pred             c-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCc
Q 048181          196 R-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPV  273 (310)
Q Consensus       196 ~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~  273 (310)
                      . .-.....++++++++.++++.. .+.|..|++....  .... .........+++++  ++.++++....        
T Consensus       174 ~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~--------  240 (289)
T cd00200         174 TGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGK--CLGTLRGHENGVNSVAFSP--DGYLLASGSED--------  240 (289)
T ss_pred             ecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCc--eecchhhcCCceEEEEEcC--CCcEEEEEcCC--------
Confidence            2 2235689999999987777665 7889888875311  1111 12233567899998  88887776622        


Q ss_pred             eeeEEECCC-CcEEEEEe
Q 048181          274 PIGQRISAF-GAVLDTIS  290 (310)
Q Consensus       274 ~~v~~~~~~-G~~~~~~~  290 (310)
                      +.+..++.+ ++....+.
T Consensus       241 ~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         241 GTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             CcEEEEEcCCceeEEEcc
Confidence            245566643 55555555

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.39  E-value=0.00052  Score=65.05  Aligned_cols=205  Identities=15%  Similarity=0.102  Sum_probs=118.4

Q ss_pred             eEEEccCCC-EEEEEeCC--CeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEe
Q 048181           38 SIAFEPVGG-AFYTGVAD--GRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIAD  112 (310)
Q Consensus        38 gia~d~~G~-l~~~d~~~--g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad  112 (310)
                      +++|.+||+ ++|+...+  .+|+.++..++ ...+..                    ..+.....++. ++| .|+++.
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--------------------~~~~~~~~~~s-pDg~~l~~~~  252 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--------------------FPGMNGAPAFS-PDGSKLAVSL  252 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--------------------CCCCccceEEC-CCCCEEEEEE
Confidence            567888987 44554332  57888887644 332210                    11122346776 455 576653


Q ss_pred             CC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          113 AY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       113 ~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      ..   ..|+.++.+++..+.+... .+    .....++++++..|+++....               ....||.+|..++
T Consensus       253 ~~~~~~~i~~~d~~~~~~~~l~~~-~~----~~~~~~~s~dg~~l~~~s~~~---------------g~~~iy~~d~~~~  312 (417)
T TIGR02800       253 SKDGNPDIYVMDLDGKQLTRLTNG-PG----IDTEPSWSPDGKSIAFTSDRG---------------GSPQIYMMDADGG  312 (417)
T ss_pred             CCCCCccEEEEECCCCCEEECCCC-CC----CCCCEEECCCCCEEEEEECCC---------------CCceEEEEECCCC
Confidence            32   2499999888766555321 11    112446777533565543211               1246899988777


Q ss_pred             eEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCc-EEEEEecCC
Q 048181          190 QVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQT-FWEAAIITR  266 (310)
Q Consensus       190 ~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~-l~va~~~~~  266 (310)
                      +.+.+.........++++|||++|+++....  .+|+.+++++   +..+............+.+  ||+ |+.+.....
T Consensus       313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~---~~~~~l~~~~~~~~p~~sp--dg~~l~~~~~~~~  387 (417)
T TIGR02800       313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG---GGERVLTDTGLDESPSFAP--NGRMILYATTRGG  387 (417)
T ss_pred             CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC---CCeEEccCCCCCCCceECC--CCCEEEEEEeCCC
Confidence            7666554444566889999999888876543  3788888764   2233211111233456777  775 444443322


Q ss_pred             CCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          267 QPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       267 ~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                            ...+..++.+|+....+..|.+
T Consensus       388 ------~~~l~~~~~~g~~~~~~~~~~g  409 (417)
T TIGR02800       388 ------RGVLGLVSTDGRFRARLPLGNG  409 (417)
T ss_pred             ------cEEEEEEECCCceeeECCCCCC
Confidence                  1356667789998888877754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.36  E-value=1.8e-05  Score=67.93  Aligned_cols=139  Identities=15%  Similarity=0.226  Sum_probs=85.9

Q ss_pred             EEccCCCEEEEEeC----------CCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           40 AFEPVGGAFYTGVA----------DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        40 a~d~~G~l~~~d~~----------~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      -+||+|+ ||.+..          .|.++++-++++.+.+                    -...+-|+||++|.+...+|
T Consensus       115 kvdP~Gr-yy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i--------------------~~~v~IsNgl~Wd~d~K~fY  173 (310)
T KOG4499|consen  115 KVDPDGR-YYGGTMADFGDDLEPIGGELYSWLAGHQVELI--------------------WNCVGISNGLAWDSDAKKFY  173 (310)
T ss_pred             ccCCCCc-eeeeeeccccccccccccEEEEeccCCCceee--------------------ehhccCCccccccccCcEEE
Confidence            4678888 676642          3555555555444322                    13445688999997778899


Q ss_pred             EEeCCC-cE--EEEeCCCCeEE---Eeecc--CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          110 IADAYS-GL--LVVGPNGRLAT---QLATG--AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       110 Vad~~~-gi--~~id~~~~~~~---~~~~~--~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                      +.|..+ .|  +.+|..+|.+.   .+...  .....-..|+|+++|. +|+|||+..+.                 |++
T Consensus       174 ~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng-----------------~~V  235 (310)
T KOG4499|consen  174 YIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNG-----------------GTV  235 (310)
T ss_pred             EEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecC-----------------cEE
Confidence            998764 46  56667776542   22111  1111234699999999 59999997654                 799


Q ss_pred             EEEcCCCCeEEEee-cCCCCCceeEEccC-CCEEEEEe
Q 048181          182 LSYNPRSSQVTVLL-RNLTGPAGVAISVD-SSFLLVSE  217 (310)
Q Consensus       182 ~~~d~~~g~~~~~~-~~l~~pnGIa~~~d-g~~Lyv~d  217 (310)
                      +++||.+|++-.-. =....-...||--. =..|||+-
T Consensus       236 ~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  236 QKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             EEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            99999998753211 12233356666532 13566654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.34  E-value=7.3e-05  Score=70.13  Aligned_cols=168  Identities=14%  Similarity=0.173  Sum_probs=95.2

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      .+.+++..+.  -+-++++.+||+.+|+...++.|..+|...... ++.                  ...+..|.|+++.
T Consensus        28 ~~~~i~~~~~--~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~------------------i~~G~~~~~i~~s   86 (369)
T PF02239_consen   28 VVARIPTGGA--PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VAT------------------IKVGGNPRGIAVS   86 (369)
T ss_dssp             EEEEEE-STT--EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEE------------------EE-SSEEEEEEE-
T ss_pred             EEEEEcCCCC--ceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEE------------------EecCCCcceEEEc
Confidence            4556666543  256788999999888888899999999875432 111                  1345689999997


Q ss_pred             cCCC-eEEEEeCC-CcEEEEeCCCCeEEE-eecc-CCC-ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCC
Q 048181          103 YATR-QLYIADAY-SGLLVVGPNGRLATQ-LATG-AEG-QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDS  177 (310)
Q Consensus       103 ~~~g-~LyVad~~-~gi~~id~~~~~~~~-~~~~-~~g-~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~  177 (310)
                       ++| .+|+++.. ..+..+|.++.+... +... ... .+-.+..++..++. ..-|+..                ...
T Consensus        87 -~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~-~~~fVv~----------------lkd  148 (369)
T PF02239_consen   87 -PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG-RPEFVVN----------------LKD  148 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS-SSEEEEE----------------ETT
T ss_pred             -CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC-CCEEEEE----------------Ecc
Confidence             555 57777754 458889988765432 2111 110 11123345555552 4434322                123


Q ss_pred             CceEEEEcCCCCe-E-EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          178 TGRLLSYNPRSSQ-V-TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       178 ~G~l~~~d~~~g~-~-~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      .++++.+|-...+ + ....+--.+|.+..++|+|+++|++....+.|-.++..
T Consensus       149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~  202 (369)
T PF02239_consen  149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK  202 (369)
T ss_dssp             TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred             CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence            4788888754321 1 12333446899999999999999987777777666643

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=0.00081  Score=64.44  Aligned_cols=203  Identities=14%  Similarity=0.093  Sum_probs=116.5

Q ss_pred             ceEEEccCCC-EEEEEe--CCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEE
Q 048181           37 ESIAFEPVGG-AFYTGV--ADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIA  111 (310)
Q Consensus        37 egia~d~~G~-l~~~d~--~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVa  111 (310)
                      .+++|.|||. +.|+..  .+..|+.++..++. +.+.                    ...+.....++. ++| .|+++
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--------------------~~~~~~~~~~~S-PDG~~La~~  260 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------------SFPRHNGAPAFS-PDGSKLAFA  260 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--------------------CCCCCcCCeEEC-CCCCEEEEE
Confidence            3789999986 555543  23467777766443 2221                    000111235786 455 56655


Q ss_pred             eCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEE-cCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          112 DAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFT-DASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       112 d~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvt-d~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      ...   ..|+.+|.++++.+.+... .    ......+++|+ |+ |+++ +...                .-.||++|.
T Consensus       261 ~~~~g~~~I~~~d~~tg~~~~lt~~-~----~~~~~~~wSPD-G~~I~f~s~~~g----------------~~~Iy~~d~  318 (429)
T PRK03629        261 LSKTGSLNLYVMDLASGQIRQVTDG-R----SNNTEPTWFPD-SQNLAYTSDQAG----------------RPQVYKVNI  318 (429)
T ss_pred             EcCCCCcEEEEEECCCCCEEEccCC-C----CCcCceEECCC-CCEEEEEeCCCC----------------CceEEEEEC
Confidence            322   2499999988877665322 1    12346788995 64 5444 3211                236899998


Q ss_pred             CCCeEEEeecCCCCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEE-E
Q 048181          187 RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEA-A  262 (310)
Q Consensus       187 ~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va-~  262 (310)
                      ++++.+.+..........+++|||++|+++....  ..|+.+++++   +..+. .. ...-....+.+  ||...+. .
T Consensus       319 ~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~---g~~~~Lt~-~~~~~~p~~Sp--DG~~i~~~s  392 (429)
T PRK03629        319 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGVQVLTD-TFLDETPSIAP--NGTMVIYSS  392 (429)
T ss_pred             CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC---CCeEEeCC-CCCCCCceECC--CCCEEEEEE
Confidence            8777666544333445789999999887765433  4688888764   33322 11 11112456888  9964333 3


Q ss_pred             ecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          263 IITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       263 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      ....      ...+..++.+|+....+....+
T Consensus       393 ~~~~------~~~l~~~~~~G~~~~~l~~~~~  418 (429)
T PRK03629        393 SQGM------GSVLNLVSTDGRFKARLPATDG  418 (429)
T ss_pred             cCCC------ceEEEEEECCCCCeEECccCCC
Confidence            3221      1346667889988777765333

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=98.30  E-value=5e-05  Score=74.18  Aligned_cols=82  Identities=20%  Similarity=0.368  Sum_probs=53.7

Q ss_pred             ccccCccceEEeCCCCeEEEEcCCCccC-ccce-eEeeeecCCCceEEEEcCCCC-------eEEEee------------
Q 048181          137 QAFHFLDGLDVDQGTGVVYFTDASGVYD-FRTI-VKLNITNDSTGRLLSYNPRSS-------QVTVLL------------  195 (310)
Q Consensus       137 ~~~~~pndvavd~~~G~lyvtd~~~~~~-~~~~-~~~~~~~~~~G~l~~~d~~~g-------~~~~~~------------  195 (310)
                      .+|..|.|+++++.+|.+||+-+...-. .... ..........|.|+++++..+       +.+.+.            
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            4789999999999889999998765310 0000 000012345689999987654       333322            


Q ss_pred             ------cCCCCCceeEEccCCCEEEEEecC
Q 048181          196 ------RNLTGPAGVAISVDSSFLLVSEFT  219 (310)
Q Consensus       196 ------~~l~~pnGIa~~~dg~~Lyv~d~~  219 (310)
                            ..+..|.+|+|+++|+ ||+++-.
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~  455 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDG  455 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCC-EEEEeCC
Confidence                  2367899999999998 6766543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.26  E-value=2.1e-05  Score=72.74  Aligned_cols=159  Identities=19%  Similarity=0.247  Sum_probs=91.9

Q ss_pred             CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeec--cCCCccccCccceEEeCC---CCeEEEEcCCCccCccce
Q 048181           94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLAT--GAEGQAFHFLDGLDVDQG---TGVVYFTDASGVYDFRTI  168 (310)
Q Consensus        94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~--~~~g~~~~~pndvavd~~---~G~lyvtd~~~~~~~~~~  168 (310)
                      .+|.+|++. ++|+|||++....|++++.++.....+..  .........+-+++++|+   ++.||+.-+......   
T Consensus         2 ~~P~~~a~~-pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~---   77 (331)
T PF07995_consen    2 NNPRSMAFL-PDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG---   77 (331)
T ss_dssp             SSEEEEEEE-TTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS---
T ss_pred             CCceEEEEe-CCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC---
Confidence            479999997 78999999986558889855432133322  222223345679999993   489998765210000   


Q ss_pred             eEeeeecCCCceEEEEcCCCC-----eEEEeec-------CCCCCceeEEccCCCEEEEEec-------------CCCeE
Q 048181          169 VKLNITNDSTGRLLSYNPRSS-----QVTVLLR-------NLTGPAGVAISVDSSFLLVSEF-------------TGNRT  223 (310)
Q Consensus       169 ~~~~~~~~~~G~l~~~d~~~g-----~~~~~~~-------~l~~pnGIa~~~dg~~Lyv~d~-------------~~~~I  223 (310)
                            ....-+|+|+....+     ..+.+..       ......+|+|+||| +|||+--             ..+.|
T Consensus        78 ------~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i  150 (331)
T PF07995_consen   78 ------GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI  150 (331)
T ss_dssp             ------SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred             ------CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence                  000124555432211     1222221       23455789999999 6999742             24689


Q ss_pred             EEEEecCCCC----------Cceee--ecCCCCCceeeeCCCCC-CcEEEEEecCC
Q 048181          224 LKYWLRGPRA----------NSFDI--INFQAKPHNIKRNPGLL-QTFWEAAIITR  266 (310)
Q Consensus       224 ~~~~~~~~~~----------g~~~~--~~l~g~Pdgl~~d~~~d-G~l~va~~~~~  266 (310)
                      +|++.+|.-.          ...++  .++- -|-+|++|+  . |+||+++.+..
T Consensus       151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~--~tg~l~~~d~G~~  203 (331)
T PF07995_consen  151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDP--NTGRLWAADNGPD  203 (331)
T ss_dssp             EEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEET--TTTEEEEEEE-SS
T ss_pred             EEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEEC--CCCcEEEEccCCC
Confidence            9999876410          01233  3343 389999999  8 99999998763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.24  E-value=0.00092  Score=59.08  Aligned_cols=187  Identities=14%  Similarity=0.138  Sum_probs=110.0

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEe--CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGV--ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~--~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      +++++-. .-.+-+|+.+..+|.+|-+.-  ...+|++++++++...-..                .+ +..-.--||++
T Consensus        36 v~~ypHd-~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~----------------~l-~~~~FgEGit~   97 (264)
T PF05096_consen   36 VETYPHD-PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV----------------PL-PPRYFGEGITI   97 (264)
T ss_dssp             EEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE----------------E--TTT--EEEEEE
T ss_pred             EEECCCC-CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE----------------EC-CccccceeEEE
Confidence            3444443 235789999987888665553  3458999998854321110                01 11123348998


Q ss_pred             ecCCCeEEEEeCCCc-EEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181          102 HYATRQLYIADAYSG-LLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       102 d~~~g~LyVad~~~g-i~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      .  +++||.-....+ .+++|+++-+. ..+.  +++++    -|++.|  +..||+||.+.                  
T Consensus        98 ~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~--y~~EG----WGLt~d--g~~Li~SDGS~------------------  149 (264)
T PF05096_consen   98 L--GDKLYQLTWKEGTGFVYDPNTLKKIGTFP--YPGEG----WGLTSD--GKRLIMSDGSS------------------  149 (264)
T ss_dssp             E--TTEEEEEESSSSEEEEEETTTTEEEEEEE---SSS------EEEEC--SSCEEEE-SSS------------------
T ss_pred             E--CCEEEEEEecCCeEEEEccccceEEEEEe--cCCcc----eEEEcC--CCEEEEECCcc------------------
Confidence            5  789998878766 78899886432 2332  23322    478866  47899999753                  


Q ss_pred             eEEEEcCCCCeEE----Eeec--CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee----eecC--------
Q 048181          180 RLLSYNPRSSQVT----VLLR--NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD----IINF--------  241 (310)
Q Consensus       180 ~l~~~d~~~g~~~----~~~~--~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~----~~~l--------  241 (310)
                      +|+.+||++-+..    +...  .+..-|=+.+- +| .||..-..+.+|.++++..   |.+.    +.++        
T Consensus       150 ~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~t---G~V~~~iDls~L~~~~~~~~  224 (264)
T PF05096_consen  150 RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPET---GKVVGWIDLSGLRPEVGRDK  224 (264)
T ss_dssp             EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTT
T ss_pred             ceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCC---CeEEEEEEhhHhhhcccccc
Confidence            6888888654322    2222  23455778776 56 5999999999999999763   4432    1111        


Q ss_pred             -----CCCCceeeeCCCCCCcEEEEE
Q 048181          242 -----QAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       242 -----~g~Pdgl~~d~~~dG~l~va~  262 (310)
                           ...-.|||.|++ .+.+||+-
T Consensus       225 ~~~~~~dVLNGIAyd~~-~~~l~vTG  249 (264)
T PF05096_consen  225 SRQPDDDVLNGIAYDPE-TDRLFVTG  249 (264)
T ss_dssp             ST--TTS-EEEEEEETT-TTEEEEEE
T ss_pred             cccccCCeeEeEeEeCC-CCEEEEEe
Confidence                 134689999874 56899985

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.23  E-value=0.00014  Score=64.43  Aligned_cols=178  Identities=16%  Similarity=0.152  Sum_probs=96.9

Q ss_pred             eecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEE--CCCceEEeeeecCCCCccccCCCccccCCCCCCcee
Q 048181           20 SIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQ--APDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF   97 (310)
Q Consensus        20 ~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~--~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~   97 (310)
                      .-+-++++++++ +.-||+|++-.+|...++|-..++++.+.  +++........     +...+.     .......--
T Consensus       116 ~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~-----~i~L~~-----~~k~N~GfE  184 (316)
T COG3204         116 EGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQ-----KIPLGT-----TNKKNKGFE  184 (316)
T ss_pred             CCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccce-----EEeccc-----cCCCCcCce
Confidence            345678888886 88999999998888777787888888764  44333222110     000000     001122234


Q ss_pred             eEEEecCCCeEEEEeCCC--cEEEEeCCCCeEEEeeccCC--Cc--cccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181           98 GLALHYATRQLYIADAYS--GLLVVGPNGRLATQLATGAE--GQ--AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~--gi~~id~~~~~~~~~~~~~~--g~--~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~  171 (310)
                      |+|+|+.+++||++-..+  +|+.++........-.....  ..  -+.-..++.+++.++.++|=.             
T Consensus       185 GlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS-------------  251 (316)
T COG3204         185 GLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS-------------  251 (316)
T ss_pred             eeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEe-------------
Confidence            999998899999996553  57877632211111000000  00  011223344444334444311             


Q ss_pred             eeecCCCceEEEEcCCCCeE-EE---------eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181          172 NITNDSTGRLLSYNPRSSQV-TV---------LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL  228 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g~~-~~---------~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~  228 (310)
                          ..+..|..+|.+ |++ ..         +...++.|.|||.+++|+ ||++. ..+..+||..
T Consensus       252 ----~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvS-EPnlfy~F~~  311 (316)
T COG3204         252 ----DESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVS-EPNLFYRFTP  311 (316)
T ss_pred             ----cCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEe-cCCcceeccc
Confidence                123445555554 322 11         234577899999999997 77653 3455666654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.20  E-value=0.00078  Score=66.27  Aligned_cols=164  Identities=17%  Similarity=0.280  Sum_probs=109.5

Q ss_pred             CCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      |.+..-.++++.|||.++.++..+|+|-.++...+.  .+|.                    .....-.++.+. ..|+.
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt--------------------eHts~Vt~v~f~-~~g~~  406 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT--------------------EHTSGVTAVQFT-ARGNV  406 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec--------------------cCCCceEEEEEE-ecCCE
Confidence            445666788888888888888888888888876543  2321                    222344588886 67887


Q ss_pred             EEEeCCCc-EEEEeCCCCe-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          109 YIADAYSG-LLVVGPNGRL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       109 yVad~~~g-i~~id~~~~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      .++..-.| |...|.+..+ .+++..+.   | ...+-+|+|| .|.|.++..-..|                .|+.++.
T Consensus       407 llssSLDGtVRAwDlkRYrNfRTft~P~---p-~QfscvavD~-sGelV~AG~~d~F----------------~IfvWS~  465 (893)
T KOG0291|consen  407 LLSSSLDGTVRAWDLKRYRNFRTFTSPE---P-IQFSCVAVDP-SGELVCAGAQDSF----------------EIFVWSV  465 (893)
T ss_pred             EEEeecCCeEEeeeecccceeeeecCCC---c-eeeeEEEEcC-CCCEEEeeccceE----------------EEEEEEe
Confidence            77655444 7777876432 23332221   2 2346899999 5988887654322                3677777


Q ss_pred             CCCeEEEeecCCCCC-ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee
Q 048181          187 RSSQVTVLLRNLTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI  238 (310)
Q Consensus       187 ~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~  238 (310)
                      ++|++.-++.+-..| -|++|+|+|+ ++++-+....|+..++-+. .+++|.
T Consensus       466 qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEt  516 (893)
T KOG0291|consen  466 QTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVET  516 (893)
T ss_pred             ecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-Cceeee
Confidence            788876666666666 5899999998 6788888998888887653 344443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.18  E-value=0.00015  Score=70.95  Aligned_cols=94  Identities=11%  Similarity=0.092  Sum_probs=67.8

Q ss_pred             ceEEEEcCCC-----CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCC---Ccee----e-e--cCCC
Q 048181          179 GRLLSYNPRS-----SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA---NSFD----I-I--NFQA  243 (310)
Q Consensus       179 G~l~~~d~~~-----g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~---g~~~----~-~--~l~g  243 (310)
                      ++|..+|..+     .++...+.--..|-|+++||||+++|++....+.|..+++..-+.   +..+    + .  .+--
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            3577777765     244444555568999999999999999999999999999864210   1111    1 1  2223


Q ss_pred             CCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181          244 KPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                      .|-..++|.  +|+.|++++.-.        +++++|-+
T Consensus       376 GPLHTaFDg--~G~aytslf~ds--------qv~kwn~~  404 (635)
T PRK02888        376 GPLHTAFDG--RGNAYTTLFLDS--------QIVKWNIE  404 (635)
T ss_pred             CcceEEECC--CCCEEEeEeecc--------eeEEEehH
Confidence            599999999  999999999863        67777743

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=0.0018  Score=61.96  Aligned_cols=200  Identities=17%  Similarity=0.156  Sum_probs=112.6

Q ss_pred             cceEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEE
Q 048181           36 GESIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYI  110 (310)
Q Consensus        36 Pegia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyV  110 (310)
                      -.+++|.|||+ ++|+...  +..|+.++..++. +.+..                    ..+.-...++. ++|+ |++
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~--------------------~~g~~~~~~wS-PDG~~La~  264 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS--------------------FRGHNGAPAFS-PDGSRLAF  264 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec--------------------CCCccCceeEC-CCCCEEEE
Confidence            35689999986 5555543  3468888876543 22210                    00111246776 5664 555


Q ss_pred             EeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          111 ADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       111 ad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      +....   .|+.+|.++++.+.+... .    ......+++|+ |+ |+++-...               ..-+||.++.
T Consensus       265 ~~~~~g~~~Iy~~d~~~~~~~~lt~~-~----~~~~~~~wSpD-G~~i~f~s~~~---------------g~~~I~~~~~  323 (429)
T PRK01742        265 ASSKDGVLNIYVMGANGGTPSQLTSG-A----GNNTEPSWSPD-GQSILFTSDRS---------------GSPQVYRMSA  323 (429)
T ss_pred             EEecCCcEEEEEEECCCCCeEeeccC-C----CCcCCEEECCC-CCEEEEEECCC---------------CCceEEEEEC
Confidence            43222   388899887766554321 1    12346788995 65 66553211               1236888887


Q ss_pred             CCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          187 RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       187 ~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .++..+.+ ... . ...+++|||++|+++..  ..++++++.+   +..+.  ...  .-....+.+  ||+..+....
T Consensus       324 ~~~~~~~l-~~~-~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~---g~~~~lt~~~--~~~~~~~sP--dG~~i~~~s~  391 (429)
T PRK01742        324 SGGGASLV-GGR-G-YSAQISADGKTLVMING--DNVVKQDLTS---GSTEVLSSTF--LDESPSISP--NGIMIIYSST  391 (429)
T ss_pred             CCCCeEEe-cCC-C-CCccCCCCCCEEEEEcC--CCEEEEECCC---CCeEEecCCC--CCCCceECC--CCCEEEEEEc
Confidence            65555443 221 1 34789999998877644  5678888754   33222  121  123466888  9975554433


Q ss_pred             CCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          265 TRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       265 ~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      .+.     ...+..++.+|+....+....+
T Consensus       392 ~g~-----~~~l~~~~~~G~~~~~l~~~~g  416 (429)
T PRK01742        392 QGL-----GKVLQLVSADGRFKARLPGSDG  416 (429)
T ss_pred             CCC-----ceEEEEEECCCCceEEccCCCC
Confidence            210     1123345789998888865544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.15  E-value=0.0026  Score=54.92  Aligned_cols=183  Identities=14%  Similarity=0.101  Sum_probs=110.2

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC-
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA-  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~-  113 (310)
                      ...++.+.+++.++++...++.|..++..........                  .........++++ +++.++++.. 
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------~~~~~~i~~~~~~-~~~~~l~~~~~  155 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL------------------RGHTDWVNSVAFS-PDGTFVASSSQ  155 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe------------------ccCCCcEEEEEEc-CcCCEEEEEcC
Confidence            5778899988887777776899998887632221110                  1122345678887 5566666544 


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ...+..+|..+++.......    .-.....++++++ + .++++..                  +|.+..+|..+++..
T Consensus       156 ~~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~~------------------~~~i~i~d~~~~~~~  212 (289)
T cd00200         156 DGTIKLWDLRTGKCVATLTG----HTGEVNSVAFSPD-GEKLLSSSS------------------DGTIKLWDLSTGKCL  212 (289)
T ss_pred             CCcEEEEEccccccceeEec----CccccceEEECCC-cCEEEEecC------------------CCcEEEEECCCCcee
Confidence            44488888765443222111    1124578899985 6 5555542                  366777877655443


Q ss_pred             Eee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          193 VLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       193 ~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ... ..-.....+++++++. ++++....+.|+.|++...  ..... .........+++++  +|+++++...
T Consensus       213 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~  281 (289)
T cd00200         213 GTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSP--DGKRLASGSA  281 (289)
T ss_pred             cchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc--eeEEEccccCCcEEEEEECC--CCCEEEEecC
Confidence            333 2233568899999965 6666666888988887531  11111 22223467788998  8776665443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.14  E-value=0.0023  Score=61.39  Aligned_cols=112  Identities=11%  Similarity=0.038  Sum_probs=70.2

Q ss_pred             eEEEecCCC-eEEEE-eCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181           98 GLALHYATR-QLYIA-DAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        98 Gla~d~~~g-~LyVa-d~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      ..++. ++| +|+.+ ...  ..|+.+|.++++.+.+.. ..+    .....+++|++..|+++-..             
T Consensus       206 ~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPDG~~la~~~~~-------------  266 (435)
T PRK05137        206 TPRFS-PNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPDGRKVVMSLSQ-------------  266 (435)
T ss_pred             eeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCCCCEEEEEEec-------------
Confidence            46675 455 45443 322  349999998887665532 222    12356889953356555321             


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG  230 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~  230 (310)
                        ..+..||.+|.++++.+.+...-......+|+|||+.|+++...  ..+|+++++++
T Consensus       267 --~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g  323 (435)
T PRK05137        267 --GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG  323 (435)
T ss_pred             --CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence              12356999998888777665544445678999999988776533  34799998765

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.13  E-value=3.6e-06  Score=48.17  Aligned_cols=28  Identities=25%  Similarity=0.483  Sum_probs=25.1

Q ss_pred             CCCCceeEEccCCCEEEEEecCCCeEEEE
Q 048181          198 LTGPAGVAISVDSSFLLVSEFTGNRTLKY  226 (310)
Q Consensus       198 l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~  226 (310)
                      +..|.||+++++|+ |||+|+.++||++|
T Consensus         1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            45799999998885 99999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.13  E-value=2.1e-05  Score=58.05  Aligned_cols=60  Identities=22%  Similarity=0.335  Sum_probs=42.1

Q ss_pred             eeEEEecCCCeEEEEeCCC------------------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEc
Q 048181           97 FGLALHYATRQLYIADAYS------------------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTD  158 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~------------------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd  158 (310)
                      ++++++..+|.+|++|...                  +++++|+.+++.+++..     .+.+||||++++++..++|++
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----GLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----EESSEEEEEE-TTSSEEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----CCCccCeEEEcCCCCEEEEEe
Confidence            3678874349999998521                  39999999998887764     467999999999644588888


Q ss_pred             CCC
Q 048181          159 ASG  161 (310)
Q Consensus       159 ~~~  161 (310)
                      +..
T Consensus        76 t~~   78 (89)
T PF03088_consen   76 TGR   78 (89)
T ss_dssp             GGG
T ss_pred             ccC
Confidence            753

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.99  E-value=0.0044  Score=53.69  Aligned_cols=188  Identities=14%  Similarity=0.132  Sum_probs=105.3

Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEE
Q 048181           40 AFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLV  119 (310)
Q Consensus        40 a~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~  119 (310)
                      ++..++. +|+...++.|+.++...+...+....        .        .....+  ..+  .++++||+.....++.
T Consensus        32 ~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~--------~--------~~~~~~--~~~--~~~~v~v~~~~~~l~~   90 (238)
T PF13360_consen   32 AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDL--------P--------GPISGA--PVV--DGGRVYVGTSDGSLYA   90 (238)
T ss_dssp             EEEETTE-EEEEETTSEEEEEETTTSEEEEEEEC--------S--------SCGGSG--EEE--ETTEEEEEETTSEEEE
T ss_pred             EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeec--------c--------ccccce--eee--cccccccccceeeeEe
Confidence            4434455 55556899999999865554443211        0        011111  244  4789999876667999


Q ss_pred             EeCCCCeEEEe-ec-cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecC
Q 048181          120 VGPNGRLATQL-AT-GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRN  197 (310)
Q Consensus       120 id~~~~~~~~~-~~-~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~  197 (310)
                      +|..+|+...- .. ..+...+..+-..+++  ++.+|+...                  +|.|+.+|+++|+..-... 
T Consensus        91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~-  149 (238)
T PF13360_consen   91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS------------------SGKLVALDPKTGKLLWKYP-  149 (238)
T ss_dssp             EETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEET------------------CSEEEEEETTTTEEEEEEE-
T ss_pred             cccCCcceeeeeccccccccccccccCceEe--cCEEEEEec------------------cCcEEEEecCCCcEEEEee-
Confidence            99887765432 11 1121223334455555  477888764                  3678999988887632222 


Q ss_pred             CCCCc------------eeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          198 LTGPA------------GVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       198 l~~pn------------GIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      +..|.            +-.+..++ .+|++..... +..++...   |...- .. ...+..+....  ++.||++...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~-~~~~d~~t---g~~~w~~~-~~~~~~~~~~~--~~~l~~~~~~  221 (238)
T PF13360_consen  150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR-VVAVDLAT---GEKLWSKP-ISGIYSLPSVD--GGTLYVTSSD  221 (238)
T ss_dssp             SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSS-EEEEETTT---TEEEEEEC-SS-ECECEECC--CTEEEEEETT
T ss_pred             cCCCCCCcceeeecccccceEEECC-EEEEEcCCCe-EEEEECCC---CCEEEEec-CCCccCCceee--CCEEEEEeCC
Confidence            12222            33333345 6888775554 56666543   33212 22 23345544555  6889999843


Q ss_pred             CCCCCCCCceeeEEECC-CCcEE
Q 048181          265 TRQPAGTPVPIGQRISA-FGAVL  286 (310)
Q Consensus       265 ~~~~~~~~~~~v~~~~~-~G~~~  286 (310)
                      .         .++.+|. .|+++
T Consensus       222 ~---------~l~~~d~~tG~~~  235 (238)
T PF13360_consen  222 G---------RLYALDLKTGKVV  235 (238)
T ss_dssp             T---------EEEEEETTTTEEE
T ss_pred             C---------EEEEEECCCCCEE
Confidence            2         7999995 57764

...

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.99  E-value=0.0035  Score=54.42  Aligned_cols=218  Identities=12%  Similarity=0.051  Sum_probs=126.7

Q ss_pred             ecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181           21 IPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA  100 (310)
Q Consensus        21 ~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla  100 (310)
                      +.++..++.+-  .....+.|..+|+..|++..+|.+..++... ..             |.     ..-....--+-+.
T Consensus        73 p~Pv~t~e~h~--kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~-------------~q-----R~~~~~spVn~vv  131 (311)
T KOG0315|consen   73 PNPVATFEGHT--KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LS-------------CQ-----RNYQHNSPVNTVV  131 (311)
T ss_pred             CCceeEEeccC--CceEEEEEeecCeEEEecCCCceEEEEeccC-cc-------------cc-----hhccCCCCcceEE
Confidence            33555555552  2456778888899888888888777776542 10             10     0001112224688


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181          101 LHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       101 ~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      +++..+.|+++|....|+..|+.........-..   ...+...++++++ |...++-..                 .|+
T Consensus       132 lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe---~~~~i~sl~v~~d-gsml~a~nn-----------------kG~  190 (311)
T KOG0315|consen  132 LHPNQTELISGDQSGNIRVWDLGENSCTHELIPE---DDTSIQSLTVMPD-GSMLAAANN-----------------KGN  190 (311)
T ss_pred             ecCCcceEEeecCCCcEEEEEccCCccccccCCC---CCcceeeEEEcCC-CcEEEEecC-----------------Ccc
Confidence            8878899999998877999998764322111111   2245567899994 876654322                 355


Q ss_pred             EEEEcCCCCeE-EEee--cCC----CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCC
Q 048181          181 LLSYNPRSSQV-TVLL--RNL----TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPG  253 (310)
Q Consensus       181 l~~~d~~~g~~-~~~~--~~l----~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~  253 (310)
                      .|.++.-++.. +.+.  ..+    .+.--.-+|||+++ +++.+....+..+..++-..++..+.+-.+--.+.+|+. 
T Consensus       191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-  268 (311)
T KOG0315|consen  191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-  268 (311)
T ss_pred             EEEEEccCCCccccceEhhheecccceEEEEEECCCCcE-EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-
Confidence            55555432211 1111  112    12345678999984 566677778877776642122222222234577899999 


Q ss_pred             CCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEec
Q 048181          254 LLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISF  291 (310)
Q Consensus       254 ~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~  291 (310)
                       ||.+.|+...-.        .+.-.+ +.|+.++.+..
T Consensus       269 -dg~YlvTassd~--------~~rlW~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  269 -DGEYLVTASSDH--------TARLWDLSAGKEVRQYQG  298 (311)
T ss_pred             -CccEEEecCCCC--------ceeecccccCceeeecCC
Confidence             998888766542        344556 35777766654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.98  E-value=0.0084  Score=57.47  Aligned_cols=113  Identities=13%  Similarity=0.035  Sum_probs=70.8

Q ss_pred             eeEEEecCCC-eEEEE-eC--CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           97 FGLALHYATR-QLYIA-DA--YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        97 ~Gla~d~~~g-~LyVa-d~--~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      ...++. ++| +|.++ ..  ...|+.++.++++.+.+.. ..+    .....+++|++..|+++....           
T Consensus       202 ~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPDG~~La~~~~~~-----------  264 (429)
T PRK03629        202 MSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPDGSKLAFALSKT-----------  264 (429)
T ss_pred             eeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCCCCEEEEEEcCC-----------
Confidence            356786 455 44333 22  2348888988887665532 222    123578999633577663321           


Q ss_pred             eecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG  230 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~  230 (310)
                          .+..||.+|.++++.+.+...-......+|+|||+.|+++...  ..+||++++++
T Consensus       265 ----g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        265 ----GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             ----CCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence                1235899998888777766544455788999999977655432  34788888865

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.97  E-value=0.004  Score=56.25  Aligned_cols=153  Identities=14%  Similarity=0.075  Sum_probs=91.3

Q ss_pred             CceeeEEEecCCCeEEEEeCCCc--EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181           94 RRTFGLALHYATRQLYIADAYSG--LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus        94 ~~P~Gla~d~~~g~LyVad~~~g--i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~  171 (310)
                      .+.+|+++++.++...+.-..-|  .+++|..+++........++..|+.  -.++++++..||.|....          
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~----------   72 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDY----------   72 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEecccc----------
Confidence            46678888743444433222223  8889999887665555555555532  466788544566665432          


Q ss_pred             eeecCCCceEEEEcCCCCeEEEe---ecCCCCCceeEEccCCCEEEEEecCC------C-----------eEEEEEecCC
Q 048181          172 NITNDSTGRLLSYNPRSSQVTVL---LRNLTGPAGVAISVDSSFLLVSEFTG------N-----------RTLKYWLRGP  231 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g~~~~~---~~~l~~pnGIa~~~dg~~Lyv~d~~~------~-----------~I~~~~~~~~  231 (310)
                         ....|.|-.||.. ...+.+   ...--.|--|.+.|||++|.|++-.=      +           .+..++..  
T Consensus        73 ---~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~--  146 (305)
T PF07433_consen   73 ---ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR--  146 (305)
T ss_pred             ---CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC--
Confidence               2356889999986 223332   23344789999999999999975321      1           12222111  


Q ss_pred             CCCce-eeecCC-----CCCceeeeCCCCCCcEEEEEecCCC
Q 048181          232 RANSF-DIINFQ-----AKPHNIKRNPGLLQTFWEAAIITRQ  267 (310)
Q Consensus       232 ~~g~~-~~~~l~-----g~Pdgl~~d~~~dG~l~va~~~~~~  267 (310)
                       .|.+ +...+|     -.-..|+++.  +|.+|+++.....
T Consensus       147 -sG~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~  185 (305)
T PF07433_consen  147 -SGALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGD  185 (305)
T ss_pred             -CCceeeeeecCccccccceeeEEecC--CCcEEEEEecCCC
Confidence             1221 111232     1357799999  9999999988753

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.96  E-value=0.00015  Score=70.94  Aligned_cols=120  Identities=18%  Similarity=0.291  Sum_probs=76.2

Q ss_pred             CCCceeeEEEecCCCeEEEEeC--C------------------CcEEEEeCCCC-------eEEEeeccC----------
Q 048181           92 ICRRTFGLALHYATRQLYIADA--Y------------------SGLLVVGPNGR-------LATQLATGA----------  134 (310)
Q Consensus        92 ~~~~P~Gla~d~~~g~LyVad~--~------------------~gi~~id~~~~-------~~~~~~~~~----------  134 (310)
                      .+.+|-|+.+++.+|++|++..  .                  .+|++++++++       +.+.+....          
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            4678899999988999999742  1                  13999988765       333332211          


Q ss_pred             ---CCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce-----------EEEEcCCCCeEEEeecCC--
Q 048181          135 ---EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR-----------LLSYNPRSSQVTVLLRNL--  198 (310)
Q Consensus       135 ---~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~-----------l~~~d~~~g~~~~~~~~l--  198 (310)
                         ....|..|..|++++ .|+|||..........     +....++|.           ++..++.+++++.+....  
T Consensus       428 ~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~~~~~~-----l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~g  501 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDP-DGNLWIQEDGGGSNNN-----LPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNG  501 (524)
T ss_pred             CcccCCCcCCCCceEECC-CCCEEEEeCCCCCCcc-----cccccccCceeeeeecccceeeeccccccceeeeccCCCC
Confidence               134688999999999 5999986543221100     001112232           444566667776665432  


Q ss_pred             CCCceeEEccCCCEEEEEe
Q 048181          199 TGPAGVAISVDSSFLLVSE  217 (310)
Q Consensus       199 ~~pnGIa~~~dg~~Lyv~d  217 (310)
                      .-..|++|+||+++|||.-
T Consensus       502 aE~tG~~fspDg~tlFvni  520 (524)
T PF05787_consen  502 AEITGPCFSPDGRTLFVNI  520 (524)
T ss_pred             cccccceECCCCCEEEEEE
Confidence            2357999999999999864

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.95  E-value=0.0024  Score=57.60  Aligned_cols=201  Identities=17%  Similarity=0.122  Sum_probs=113.9

Q ss_pred             EEccCCCEEEEEe-----CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEeC
Q 048181           40 AFEPVGGAFYTGV-----ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIADA  113 (310)
Q Consensus        40 a~d~~G~l~~~d~-----~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad~  113 (310)
                      +|++||+++|+.-     ..|.|-.++...++..+.                 .+....-.|+-|.+. ++| .|.|++.
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~-----------------E~~s~GIGPHel~l~-pDG~tLvVANG  118 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG-----------------EFPSHGIGPHELLLM-PDGETLVVANG  118 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe-----------------EecCCCcChhhEEEc-CCCCEEEEEcC
Confidence            5778898888853     467788888775554432                 122334468888886 566 8888875


Q ss_pred             C------C------------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181          114 Y------S------------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus       114 ~------~------------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      +      .            .+..+|..+|++..-....+.....+...+++++ +|.+++.-....-. .+        
T Consensus       119 GI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~-~~--------  188 (305)
T PF07433_consen  119 GIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDP-GD--------  188 (305)
T ss_pred             CCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCC-Cc--------
Confidence            3      1            2556666666542211121222345678899999 59999986432100 00        


Q ss_pred             CCCceEEEEcCCCCeEEEee------cCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCce-
Q 048181          176 DSTGRLLSYNPRSSQVTVLL------RNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHN-  247 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~------~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdg-  247 (310)
                       ..--|..++.. ...+.+.      ..+ .+--.||++++|+.+.++....+++..++...   |...  .....||. 
T Consensus       189 -~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t---g~~~--~~~~l~D~c  261 (305)
T PF07433_consen  189 -APPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT---GRLL--GSVPLPDAC  261 (305)
T ss_pred             -cCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC---CCEe--eccccCcee
Confidence             00112333322 1122211      112 35678999999998889999999999886542   3321  11124554 


Q ss_pred             -eeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEE
Q 048181          248 -IKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLD  287 (310)
Q Consensus       248 -l~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~  287 (310)
                       ++...  +|  |+...+.        +.++++++.+....
T Consensus       262 Gva~~~--~~--f~~ssG~--------G~~~~~~~~~~~~~  290 (305)
T PF07433_consen  262 GVAPTD--DG--FLVSSGQ--------GQLIRLSPDGPQPR  290 (305)
T ss_pred             eeeecC--Cc--eEEeCCC--------ccEEEccCcccccc
Confidence             44454  55  3333332        36777777655443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00082  Score=56.90  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=77.2

Q ss_pred             CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCe-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      +.=.||+-|  +.+|+-+|...-+..-||++=. ...+.-..+|.|....|-+..-  +|.+|..-..            
T Consensus       131 GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~------------  194 (262)
T COG3823         131 GEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQ------------  194 (262)
T ss_pred             CcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeee------------
Confidence            344688875  6678888877668888887621 2222223567788888888876  4888865322            


Q ss_pred             eecCCCceEEEEcCCCCeEEEeec-------------CCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLLR-------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~~-------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                           +-++.|++|++|++..+++             +...+||||.+|+++.+|++-..=..++-+.
T Consensus       195 -----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk  257 (262)
T COG3823         195 -----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVK  257 (262)
T ss_pred             -----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEE
Confidence                 2479999999998876653             2347899999999988999754333444443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.90  E-value=0.0086  Score=55.90  Aligned_cols=205  Identities=13%  Similarity=0.117  Sum_probs=101.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe----cCCCe--EEE-EeCC--
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH----YATRQ--LYI-ADAY--  114 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d----~~~g~--LyV-ad~~--  114 (310)
                      ...+++....++.++.++.+|+.....                     ..++++.+.+-    .....  |.+ ++..  
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~---------------------~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g  125 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKELQSL---------------------PVGRPNNVDVRYGFPLNGKTVDLAVASDRSDG  125 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EEEEE----------------------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCC
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEEEee---------------------cCCCcceeeeecceecCCceEEEEEEecCcCC
Confidence            456777777788899999988764332                     12355533320    01222  333 3432  


Q ss_pred             -C--cEEEEeCCCCeEEEeeccCC--CccccCccceEE--eCCCCeEEEEcCCCccCccceeEeeeecCCCceE--EEEc
Q 048181          115 -S--GLLVVGPNGRLATQLATGAE--GQAFHFLDGLDV--DQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL--LSYN  185 (310)
Q Consensus       115 -~--gi~~id~~~~~~~~~~~~~~--g~~~~~pndvav--d~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l--~~~d  185 (310)
                       +  .+++||++++.++.+.....  ...+.-+-|+++  ++.+|.+|+--..                .+|.+  |++.
T Consensus       126 ~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~  189 (381)
T PF02333_consen  126 RNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELT  189 (381)
T ss_dssp             T-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEE
T ss_pred             CCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEE
Confidence             2  28889988777665532110  012333567776  3435766643211                12332  2221


Q ss_pred             -CCCCeEE--Ee--ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee------ecCCCCCceeee--CC
Q 048181          186 -PRSSQVT--VL--LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI------INFQAKPHNIKR--NP  252 (310)
Q Consensus       186 -~~~g~~~--~~--~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~------~~l~g~Pdgl~~--d~  252 (310)
                       ...+.++  .+  ..-...+.|++.|....+||++|-. .-||+|+.+.......++      ..+..-.-||++  ..
T Consensus       190 ~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~  268 (381)
T PF02333_consen  190 DDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS  268 (381)
T ss_dssp             E-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C
T ss_pred             eCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecC
Confidence             2223221  11  1233578999999998899999964 689999876432111122      123334678887  23


Q ss_pred             CCCCcEEEEEecCCCCCCCCceeeEEECCCC--cEEEEEecCCC
Q 048181          253 GLLQTFWEAAIITRQPAGTPVPIGQRISAFG--AVLDTISFEAQ  294 (310)
Q Consensus       253 ~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G--~~~~~~~~p~~  294 (310)
                      +-+|.|+++..+..        .-..|+.+|  +.+..+.+-++
T Consensus       269 ~g~gYLivSsQG~~--------sf~Vy~r~~~~~~~g~f~i~~~  304 (381)
T PF02333_consen  269 DGKGYLIVSSQGDN--------SFAVYDREGPNAYVGSFRIGDG  304 (381)
T ss_dssp             CC-EEEEEEEGGGT--------EEEEEESSTT--EEEEEEEE--
T ss_pred             CCCeEEEEEcCCCC--------eEEEEecCCCCcccceEEeccC
Confidence            00456777777763        455566443  56677766554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.89  E-value=0.00069  Score=60.96  Aligned_cols=141  Identities=16%  Similarity=0.208  Sum_probs=89.8

Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC-
Q 048181           37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY-  114 (310)
Q Consensus        37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~-  114 (310)
                      ..|+| .++.++|+...=+++-.+++.-..+. +.  .+...        +.+.+..+ +-+|||+. ...--||+... 
T Consensus       106 Hdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~Wk--PpFIs--------~la~eDRC-HLNGlA~~-~g~p~yVTa~~~  172 (335)
T TIGR03032       106 HDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWK--PPFIS--------KLAPEDRC-HLNGMALD-DGEPRYVTALSQ  172 (335)
T ss_pred             hheee-cCCcEEEEECcceeEEEECCCCccccccC--Ccccc--------ccCccCce-eecceeee-CCeEEEEEEeec
Confidence            34777 46677888777777878877644331 11  00000        01111222 45799995 34445775321 


Q ss_pred             ------------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          115 ------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       115 ------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                                  .|=..+|..++++  +++     .+.+|..-...  +|+|||.|+..                 |.+.
T Consensus       173 sD~~~gWR~~~~~gG~vidv~s~ev--l~~-----GLsmPhSPRWh--dgrLwvldsgt-----------------Gev~  226 (335)
T TIGR03032       173 SDVADGWREGRRDGGCVIDIPSGEV--VAS-----GLSMPHSPRWY--QGKLWLLNSGR-----------------GELG  226 (335)
T ss_pred             cCCcccccccccCCeEEEEeCCCCE--EEc-----CccCCcCCcEe--CCeEEEEECCC-----------------CEEE
Confidence                        1222355555532  222     35677777777  59999999864                 8999


Q ss_pred             EEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec
Q 048181          183 SYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF  218 (310)
Q Consensus       183 ~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~  218 (310)
                      ++|+++|+.+++..--.+|.||+|.  |++++|+-+
T Consensus       227 ~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       227 YVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             EEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence            9999889998888766799999999  888888665

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.021  Score=54.70  Aligned_cols=203  Identities=10%  Similarity=0.016  Sum_probs=105.5

Q ss_pred             ceEEEccCCC---EEEEEeCC--CeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEE
Q 048181           37 ESIAFEPVGG---AFYTGVAD--GRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLY  109 (310)
Q Consensus        37 egia~d~~G~---l~~~d~~~--g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~Ly  109 (310)
                      .+++|.|||+   ++|+...+  .+|+..+.+++. ..+.                    ...+.....++. ++| +|.
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--------------------~~~g~~~~p~wS-PDG~~La  246 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--------------------ALQGNQLMPTFS-PRKKLLA  246 (428)
T ss_pred             ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--------------------cCCCCccceEEC-CCCCEEE
Confidence            3578999985   44566543  568888877553 2221                    011122235675 455 554


Q ss_pred             EEeCC---CcEEE--EeCCC---CeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCce
Q 048181          110 IADAY---SGLLV--VGPNG---RLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       110 Vad~~---~gi~~--id~~~---~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      ++...   ..++.  ++.++   ++.+.+....    .......+++|+ |+ |+++....               ..-+
T Consensus       247 f~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~----~~~~~~p~wSPD-G~~Laf~s~~~---------------g~~~  306 (428)
T PRK01029        247 FISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA----FGTQGNPSFSPD-GTRLVFVSNKD---------------GRPR  306 (428)
T ss_pred             EEECCCCCcceeEEEeecccCCCCcceEeecCC----CCCcCCeEECCC-CCEEEEEECCC---------------CCce
Confidence            44321   13444  34433   2333333211    111234688995 64 55543211               1235


Q ss_pred             EEEEcCC--CCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCC
Q 048181          181 LLSYNPR--SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLL  255 (310)
Q Consensus       181 l~~~d~~--~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~d  255 (310)
                      ||+++.+  +++.+.+..........+|+|||++|+++...  ..+|+.+++++.   ..+. ...+.......+.+  |
T Consensus       307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g---~~~~Lt~~~~~~~~p~wSp--D  381 (428)
T PRK01029        307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG---RDYQLTTSPENKESPSWAI--D  381 (428)
T ss_pred             EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC---CeEEccCCCCCccceEECC--C
Confidence            7777543  23344443322333568899999988776543  357999988653   3322 21123345678888  8


Q ss_pred             Cc-EEEEEecCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181          256 QT-FWEAAIITRQPAGTPVPIGQRISAFGAVLDTISF  291 (310)
Q Consensus       256 G~-l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~  291 (310)
                      |+ |+.+.....      ...+..+|.+|.....+..
T Consensus       382 G~~L~f~~~~~g------~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        382 SLHLVYSAGNSN------ESELYLISLITKKTRKIVI  412 (428)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCEEEeec
Confidence            86 443332221      1367788877654444443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.85  E-value=0.014  Score=56.30  Aligned_cols=112  Identities=8%  Similarity=0.024  Sum_probs=70.3

Q ss_pred             eEEEecCCC-eEEEE-eCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181           98 GLALHYATR-QLYIA-DAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        98 Gla~d~~~g-~LyVa-d~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      ...+. ++| +|+++ +..  ..|+.+|.++++.+.+.. ..+  .  ....+++|++..|+++....            
T Consensus       222 ~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g--~--~~~~~wSPDG~~La~~~~~~------------  283 (448)
T PRK04792        222 SPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG--I--NGAPRFSPDGKKLALVLSKD------------  283 (448)
T ss_pred             CceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC--C--cCCeeECCCCCEEEEEEeCC------------
Confidence            45675 455 45443 322  249999998877655432 222  1  13578899633476653211            


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG  230 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~  230 (310)
                         .+..||.+|.++++.+.+..........+|+|||++|+++...  ...|+++++++
T Consensus       284 ---g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~  339 (448)
T PRK04792        284 ---GQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS  339 (448)
T ss_pred             ---CCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence               1246999998888777665544455678999999988776543  35788888764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.82  E-value=0.01  Score=56.48  Aligned_cols=187  Identities=19%  Similarity=0.197  Sum_probs=116.6

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ..-..+++.++|..+|+...+|.|..++...+.. .+.            |      .....+-.+|+.+ ..+.||.+.
T Consensus       321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~------------g------~~h~nqI~~~~~~-~~~~~~t~g  381 (603)
T KOG0318|consen  321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA------------G------KGHTNQIKGMAAS-ESGELFTIG  381 (603)
T ss_pred             cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc------------c------ccccceEEEEeec-CCCcEEEEe
Confidence            3455788889999899999999999998764431 111            0      1223455688885 568899888


Q ss_pred             CCCcEEEEeCCCCeEEE-eeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AYSGLLVVGPNGRLATQ-LATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~-~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      ....+.+++..++..+. ..-..    -..|-++++.++++.+.++....                   |..+...++ +
T Consensus       382 ~Dd~l~~~~~~~~~~t~~~~~~l----g~QP~~lav~~d~~~avv~~~~~-------------------iv~l~~~~~-~  437 (603)
T KOG0318|consen  382 WDDTLRVISLKDNGYTKSEVVKL----GSQPKGLAVLSDGGTAVVACISD-------------------IVLLQDQTK-V  437 (603)
T ss_pred             cCCeEEEEecccCcccccceeec----CCCceeEEEcCCCCEEEEEecCc-------------------EEEEecCCc-c
Confidence            77778888775432211 00011    23467999998534555554321                   222221111 1


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCC
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQ  267 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~  267 (310)
                      .. ..--..|.++|++||++.+-| --..+.|..|.++|...-+..+ ....+.+.-++..+  ||.+++++...|.
T Consensus       438 ~~-~~~~y~~s~vAv~~~~~~vaV-GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp--d~~yla~~Da~rk  510 (603)
T KOG0318|consen  438 SS-IPIGYESSAVAVSPDGSEVAV-GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP--DGAYLAAGDASRK  510 (603)
T ss_pred             ee-eccccccceEEEcCCCCEEEE-ecccceEEEEEecCCcccceeeeecccCCceEEEECC--CCcEEEEeccCCc
Confidence            11 122246899999999985443 3455679999998743211112 34456688899999  9999888887763

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.79  E-value=0.014  Score=56.03  Aligned_cols=113  Identities=12%  Similarity=0.038  Sum_probs=70.0

Q ss_pred             eEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181           98 GLALHYATRQLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      ..++.++...|+.+...   ..|+.++.++++.+.+.. ..+  .  ....+++|++..|+++-..              
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g--~--~~~~~~SpDG~~l~~~~s~--------------  268 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG--I--NGAPSFSPDGRRLALTLSR--------------  268 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC--C--ccCceECCCCCEEEEEEeC--------------
Confidence            45665333345554322   249999998877655532 222  1  1257899963357665322              


Q ss_pred             cCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181          175 NDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG  230 (310)
Q Consensus       175 ~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~  230 (310)
                       ..+..||.+|..+++.+.+..........+|+|||+.|+++...  ...|+.+++++
T Consensus       269 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~  325 (433)
T PRK04922        269 -DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG  325 (433)
T ss_pred             -CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence             12346999999888776665443344578999999988776543  34688888764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.77  E-value=0.012  Score=55.59  Aligned_cols=97  Identities=12%  Similarity=0.053  Sum_probs=59.9

Q ss_pred             CceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCC-CCCceeeeCCCC
Q 048181          178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQ-AKPHNIKRNPGL  254 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~-g~Pdgl~~d~~~  254 (310)
                      +|.++.+|+.+|+.. +...+..+..++..  ++.||+.. ..++|+.++...   |+..-  ..+. ..-....+ .  
T Consensus       265 ~g~l~ald~~tG~~~-W~~~~~~~~~~~~~--~~~vy~~~-~~g~l~ald~~t---G~~~W~~~~~~~~~~~sp~v-~--  334 (394)
T PRK11138        265 NGNLVALDLRSGQIV-WKREYGSVNDFAVD--GGRIYLVD-QNDRVYALDTRG---GVELWSQSDLLHRLLTAPVL-Y--  334 (394)
T ss_pred             CCeEEEEECCCCCEE-EeecCCCccCcEEE--CCEEEEEc-CCCeEEEEECCC---CcEEEcccccCCCcccCCEE-E--
Confidence            478999999888652 22233344455553  44688876 467898888753   32211  1111 11122334 3  


Q ss_pred             CCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCC
Q 048181          255 LQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEA  293 (310)
Q Consensus       255 dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~  293 (310)
                      +|.||++...+         .+..+|+ +|+++....++.
T Consensus       335 ~g~l~v~~~~G---------~l~~ld~~tG~~~~~~~~~~  365 (394)
T PRK11138        335 NGYLVVGDSEG---------YLHWINREDGRFVAQQKVDS  365 (394)
T ss_pred             CCEEEEEeCCC---------EEEEEECCCCCEEEEEEcCC
Confidence            58999987764         6888896 799999988863

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.76  E-value=0.021  Score=51.32  Aligned_cols=222  Identities=12%  Similarity=0.072  Sum_probs=121.0

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECC-----Cce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAP-----DGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~-----g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      .|..|.||++.|.+.+|++|...+...-++.+     +..  .++....+       .+      ......|.|+++. .
T Consensus        21 ~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~-------~~------~~~~~~PTGiVfN-~   86 (336)
T TIGR03118        21 GLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP-------PP------LAAEGTPTGQVFN-G   86 (336)
T ss_pred             cccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC-------CC------CCCCCCccEEEEe-C
Confidence            67899999999999877788778877777765     211  11111100       00      1234578999996 3


Q ss_pred             CCeEEEEeCC-C--cEEEEeCCCCeEEEeeccCC-------------CccccCccceEEeCC--CCeEEEEcCCCccCcc
Q 048181          105 TRQLYIADAY-S--GLLVVGPNGRLATQLATGAE-------------GQAFHFLDGLDVDQG--TGVVYFTDASGVYDFR  166 (310)
Q Consensus       105 ~g~LyVad~~-~--gi~~id~~~~~~~~~~~~~~-------------g~~~~~pndvavd~~--~G~lyvtd~~~~~~~~  166 (310)
                      ....-|+... .  ..+.+..++|.+.-+....+             +..-..=-++|+...  ...||.+|-.      
T Consensus        87 ~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~------  160 (336)
T TIGR03118        87 SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR------  160 (336)
T ss_pred             CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC------
Confidence            3333233211 1  13344444444433321110             000001124555431  2466666643      


Q ss_pred             ceeEeeeecCCCceEEEEcCCCCeEEE---e----ecCCCCCceeEEccCCCEEEEEecC-------------CCeEEEE
Q 048181          167 TIVKLNITNDSTGRLLSYNPRSSQVTV---L----LRNLTGPAGVAISVDSSFLLVSEFT-------------GNRTLKY  226 (310)
Q Consensus       167 ~~~~~~~~~~~~G~l~~~d~~~g~~~~---~----~~~l~~pnGIa~~~dg~~Lyv~d~~-------------~~~I~~~  226 (310)
                                 +|+|-.||..-.++..   .    +..-..|-+|.--  |..|||+-..             .+.|-+|
T Consensus       161 -----------~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvF  227 (336)
T TIGR03118       161 -----------QGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVF  227 (336)
T ss_pred             -----------CCceEEecCccccccCCCCccCCCCCCCCCCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEE
Confidence                       3667767643222211   0    1112357788665  3459997532             2457777


Q ss_pred             EecCCCCCceee-ecCCCCCceeeeCCC----CCCcEEEEEecCCCCCCCCceeeEEECCC-CcEEEEEecCCCc
Q 048181          227 WLRGPRANSFDI-INFQAKPHNIKRNPG----LLQTFWEAAIITRQPAGTPVPIGQRISAF-GAVLDTISFEAQY  295 (310)
Q Consensus       227 ~~~~~~~g~~~~-~~l~g~Pdgl~~d~~----~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~p~~~  295 (310)
                      +.+|.-..+... ..| ..|.||++.++    +.|.|.|+-++-        +.+-.||++ |+.+..+..+.+.
T Consensus       228 d~~G~l~~r~as~g~L-NaPWG~a~APa~FG~~sg~lLVGNFGD--------G~InaFD~~sG~~~g~L~~~~G~  293 (336)
T TIGR03118       228 TLNGQLLRRVASSGRL-NAPWGLAIAPESFGSLSGALLVGNFGD--------GTINAYDPQSGAQLGQLLDPDNH  293 (336)
T ss_pred             cCCCcEEEEeccCCcc-cCCceeeeChhhhCCCCCCeEEeecCC--------ceeEEecCCCCceeeeecCCCCC
Confidence            776532111111 223 46999999431    257899998886        489999985 9999999999874

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.74  E-value=0.014  Score=52.42  Aligned_cols=192  Identities=13%  Similarity=0.095  Sum_probs=108.9

Q ss_pred             CCCCceeeEEEecCCCeEEEEeCCCc-EEEEeCC--C--CeEEEeeccCC---C-ccccCccceEEeCCCCeEEEEcCCC
Q 048181           91 PICRRTFGLALHYATRQLYIADAYSG-LLVVGPN--G--RLATQLATGAE---G-QAFHFLDGLDVDQGTGVVYFTDASG  161 (310)
Q Consensus        91 ~~~~~P~Gla~d~~~g~LyVad~~~g-i~~id~~--~--~~~~~~~~~~~---g-~~~~~pndvavd~~~G~lyvtd~~~  161 (310)
                      +.+.+|+||++. +.+-+||+|...+ ...+|..  +  +....+.-.++   + .....|.++++.. ...+-|+....
T Consensus        20 p~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~   97 (336)
T TIGR03118        20 PGLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGI   97 (336)
T ss_pred             ccccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCc
Confidence            566789999996 6899999998876 3344433  1  11111111111   1 1234588888886 34444554321


Q ss_pred             ccCccceeEeeeecCCCceEEEEcCCCCeE------EEeecC--CCCCceeEEccC--CCEEEEEecCCCeEEEEEecCC
Q 048181          162 VYDFRTIVKLNITNDSTGRLLSYNPRSSQV------TVLLRN--LTGPAGVAISVD--SSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       162 ~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~------~~~~~~--l~~pnGIa~~~d--g~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      . ....+    +....+|.|.-+.+.-+..      .++...  -..=.|+|+...  +++||.++..+++|-+|+-+-.
T Consensus        98 ~-~~a~F----if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~  172 (336)
T TIGR03118        98 T-GPSRF----LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR  172 (336)
T ss_pred             c-cceeE----EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence            1 11111    1223467777776642222      122111  111258887743  6799999999999999964321


Q ss_pred             CCCc-eee--ecCC--CCCceeeeCCCCCCcEEEEEecCCCCCC-----CCceeeEEECCCCcEEEEEecC
Q 048181          232 RANS-FDI--INFQ--AKPHNIKRNPGLLQTFWEAAIITRQPAG-----TPVPIGQRISAFGAVLDTISFE  292 (310)
Q Consensus       232 ~~g~-~~~--~~l~--g~Pdgl~~d~~~dG~l~va~~~~~~~~~-----~~~~~v~~~~~~G~~~~~~~~p  292 (310)
                      +... ...  ..+|  -.|-+|.--   .|+|||+-.-.....+     .-++.|-+||.+|++++++...
T Consensus       173 ~~~~~g~F~DP~iPagyAPFnIqni---g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~  240 (336)
T TIGR03118       173 PPPLPGSFIDPALPAGYAPFNVQNL---GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS  240 (336)
T ss_pred             cccCCCCccCCCCCCCCCCcceEEE---CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC
Confidence            1100 001  2344  248888765   4899999655432221     2346788999999999988554

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.72  E-value=0.017  Score=57.22  Aligned_cols=215  Identities=16%  Similarity=0.146  Sum_probs=132.9

Q ss_pred             CCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCC--ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181           29 FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD--GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR  106 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g  106 (310)
                      |...-.+..++.|...|+.+++...+|+|+.+|...  .+++|..                   +..-+-.-+++| +.|
T Consensus       388 FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-------------------P~p~QfscvavD-~sG  447 (893)
T KOG0291|consen  388 FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-------------------PEPIQFSCVAVD-PSG  447 (893)
T ss_pred             eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-------------------CCceeeeEEEEc-CCC
Confidence            333335677888999999999999999999999873  2344421                   122233468898 678


Q ss_pred             eEEEEeCCC--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          107 QLYIADAYS--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       107 ~LyVad~~~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      .|.+|-...  .|+..+.++|+..-+...=+| |   ..++.+++. |.+.++-+...               +=++|-+
T Consensus       448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-P---Vs~l~f~~~-~~~LaS~SWDk---------------TVRiW~i  507 (893)
T KOG0291|consen  448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-P---VSGLSFSPD-GSLLASGSWDK---------------TVRIWDI  507 (893)
T ss_pred             CEEEeeccceEEEEEEEeecCeeeehhcCCCC-c---ceeeEEccc-cCeEEeccccc---------------eEEEEEe
Confidence            887765443  388999999876544433222 2   357899994 88888765421               1133433


Q ss_pred             cCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC-CCCc-----------eeeecC-------CCCC
Q 048181          185 NPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP-RANS-----------FDIINF-------QAKP  245 (310)
Q Consensus       185 d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~-~~g~-----------~~~~~l-------~g~P  245 (310)
                      -...++++.+. --.-.-+++|.|||+.|-|+ +..+.|.-|+.... ..+.           .+.+.+       ...=
T Consensus       508 f~s~~~vEtl~-i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F  585 (893)
T KOG0291|consen  508 FSSSGTVETLE-IRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF  585 (893)
T ss_pred             eccCceeeeEe-eccceeEEEEcCCCCeEEEE-EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence            33345555543 12345789999999987665 56677776665421 1111           111000       0112


Q ss_pred             ceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCCCc
Q 048181          246 HNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEAQY  295 (310)
Q Consensus       246 dgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~~  295 (310)
                      .-|+...  ||+..+|....+        .+..|+ ++|-++.++++-...
T Consensus       586 tti~ySa--DG~~IlAgG~sn--------~iCiY~v~~~vllkkfqiS~N~  626 (893)
T KOG0291|consen  586 TTICYSA--DGKCILAGGESN--------SICIYDVPEGVLLKKFQISDNR  626 (893)
T ss_pred             EEEEEcC--CCCEEEecCCcc--------cEEEEECchhheeeeEEecccc
Confidence            4588888  998888876664        455566 667777777776543

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.65  E-value=0.0002  Score=44.75  Aligned_cols=38  Identities=21%  Similarity=0.180  Sum_probs=34.1

Q ss_pred             eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181          194 LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       194 ~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      +..++..||||++++.++.||.+|+..+.|.+++++|.
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            44578899999999999999999999999999999864

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.64  E-value=0.044  Score=52.47  Aligned_cols=113  Identities=11%  Similarity=-0.016  Sum_probs=67.8

Q ss_pred             eEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181           98 GLALHYATRQLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      ..++.++..+|+++...   ..|+.+|..+++.+.+.. ..+    .....+++|++..|+++-..              
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPDG~~la~~~~~--------------  260 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPDGRTLAVALSR--------------  260 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCCCCEEEEEEcc--------------
Confidence            45776333355544322   239999998887665532 222    12357899963357665321              


Q ss_pred             cCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec--CCCeEEEEEecC
Q 048181          175 NDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRG  230 (310)
Q Consensus       175 ~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~  230 (310)
                       ...-.||.+|.+++..+.+...-..-...+|+|||++|+++..  ....||+++.++
T Consensus       261 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        261 -DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             -CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence             1224689998876666655443333456789999998876543  234688877654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.64  E-value=0.045  Score=51.75  Aligned_cols=113  Identities=10%  Similarity=-0.017  Sum_probs=66.9

Q ss_pred             eEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181           98 GLALHYATRQLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      ..++.+....|+++...   ..|+.++.++++...+.. ..+    ....++++|++..|+++....             
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spDg~~l~~~~~~~-------------  255 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPDGSKLAVSLSKD-------------  255 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCCCCEEEEEECCC-------------
Confidence            34565333345444332   248889988876554432 222    123478888533577764321             


Q ss_pred             cCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec--CCCeEEEEEecC
Q 048181          175 NDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRG  230 (310)
Q Consensus       175 ~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~  230 (310)
                        .+..||.+|..+++.+.+..........+|++||++|+++..  ....|+.+++++
T Consensus       256 --~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~  311 (417)
T TIGR02800       256 --GNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG  311 (417)
T ss_pred             --CCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence              234689999877766655443323346789999998876543  234789888764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.64  E-value=0.053  Score=51.78  Aligned_cols=114  Identities=10%  Similarity=0.030  Sum_probs=70.0

Q ss_pred             eeEEEecCCCeEEE-EeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181           97 FGLALHYATRQLYI-ADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        97 ~Gla~d~~~g~LyV-ad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      ...++.++..+|++ +...  ..|+.++.++++.+.+.. ..+    .....+++|++..|+++-...            
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG~~la~~~~~~------------  264 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDGSKLAFVLSKD------------  264 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCCCEEEEEEccC------------
Confidence            35577633345544 4322  249999998887665532 222    112578888533566653221            


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG  230 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~  230 (310)
                         .+..||.+|.++++.+.+...-.......|+|||+.|+++...  ...|+++++++
T Consensus       265 ---g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~  320 (430)
T PRK00178        265 ---GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG  320 (430)
T ss_pred             ---CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence               1246999998888776655443344567899999988776433  34788888764

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.63  E-value=0.00061  Score=65.46  Aligned_cols=121  Identities=16%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             CCCceeeEEEecCCCeEEEEeCCC-----------------cEEEEeCCCC-------eEEEeeccCCC-----------
Q 048181           92 ICRRTFGLALHYATRQLYIADAYS-----------------GLLVVGPNGR-------LATQLATGAEG-----------  136 (310)
Q Consensus        92 ~~~~P~Gla~d~~~g~LyVad~~~-----------------gi~~id~~~~-------~~~~~~~~~~g-----------  136 (310)
                      ...+|-++++.+..|++|++...+                 +|+++-+.++       +...+....+.           
T Consensus       415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~  494 (616)
T COG3211         415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI  494 (616)
T ss_pred             cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence            456889999987788999975321                 3888877664       33333321111           


Q ss_pred             --ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCC--CCCceeEEccCCCE
Q 048181          137 --QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL--TGPAGVAISVDSSF  212 (310)
Q Consensus       137 --~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l--~~pnGIa~~~dg~~  212 (310)
                        .-|+.|+++++|+. |+||+......-...++.      ..-+.+..=++++++++.....-  .--.|++|+||+++
T Consensus       495 ~~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~~------~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~T  567 (616)
T COG3211         495 NANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNRF------RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKT  567 (616)
T ss_pred             ccccccCCCceEECCC-CCEEEEecCCCCccCccc------ccccccccCCCccceeeeeccCCCcceeecceeCCCCce
Confidence              12777999999995 999985433211111100      01112333355566665544322  23469999999999


Q ss_pred             EEEEecC
Q 048181          213 LLVSEFT  219 (310)
Q Consensus       213 Lyv~d~~  219 (310)
                      |||.-..
T Consensus       568 lFV~vQH  574 (616)
T COG3211         568 LFVNVQH  574 (616)
T ss_pred             EEEEecC
Confidence            9997553

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.62  E-value=0.027  Score=52.75  Aligned_cols=98  Identities=13%  Similarity=0.047  Sum_probs=59.8

Q ss_pred             CceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCC-CCceeeeCCCC
Q 048181          178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQA-KPHNIKRNPGL  254 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g-~Pdgl~~d~~~  254 (310)
                      +|.++.+|+++|+..-.. ........+++  ++++|+.. ..++|+.++.+.   |+..-  ..+.+ .-....+.   
T Consensus       250 ~g~l~a~d~~tG~~~W~~-~~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~t---G~~~W~~~~~~~~~~ssp~i~---  319 (377)
T TIGR03300       250 QGRVAALDLRSGRVLWKR-DASSYQGPAVD--DNRLYVTD-ADGVVVALDRRS---GSELWKNDELKYRQLTAPAVV---  319 (377)
T ss_pred             CCEEEEEECCCCcEEEee-ccCCccCceEe--CCEEEEEC-CCCeEEEEECCC---CcEEEccccccCCccccCEEE---
Confidence            478999999888653222 23333444443  45688875 578899998753   32211  12211 11122343   


Q ss_pred             CCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCC
Q 048181          255 LQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQ  294 (310)
Q Consensus       255 dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~  294 (310)
                      ++.||++...+         .+..+|+ +|+++..+..+.+
T Consensus       320 g~~l~~~~~~G---------~l~~~d~~tG~~~~~~~~~~~  351 (377)
T TIGR03300       320 GGYLVVGDFEG---------YLHWLSREDGSFVARLKTDGS  351 (377)
T ss_pred             CCEEEEEeCCC---------EEEEEECCCCCEEEEEEcCCC
Confidence            46899987654         6888997 5999999988753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.61  E-value=0.00011  Score=41.91  Aligned_cols=28  Identities=11%  Similarity=0.197  Sum_probs=25.5

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCeEEEE
Q 048181           33 AFGGESIAFEPVGGAFYTGVADGRILKY   60 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~   60 (310)
                      |..|.|++++++|++|++|..+++|.++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4689999999999999999999999875

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.0035  Score=58.80  Aligned_cols=78  Identities=19%  Similarity=0.160  Sum_probs=47.2

Q ss_pred             EeCCCC-CCCcceEEEccCCCEEEEEe-------------CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCC
Q 048181           27 ILFPPK-AFGGESIAFEPVGGAFYTGV-------------ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPI   92 (310)
Q Consensus        27 ~~~~~~-~~~Pegia~d~~G~l~~~d~-------------~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~   92 (310)
                      -.+|+. ...-..|+|+|||.||++-=             ..|+|+|++.++.+.. .          ..+...+-+...
T Consensus       169 ~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~-d----------~p~~~~~i~s~G  237 (399)
T COG2133         169 RGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPA-D----------NPFPNSEIWSYG  237 (399)
T ss_pred             ecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCccccc-C----------CCCCCcceEEec
Confidence            345532 45667899999997555421             2356777776654321 0          011111222234


Q ss_pred             CCceeeEEEecCCCeEEEEeCCC
Q 048181           93 CRRTFGLALHYATRQLYIADAYS  115 (310)
Q Consensus        93 ~~~P~Gla~d~~~g~LyVad~~~  115 (310)
                      ..+|.|+++++..|.||+++++.
T Consensus       238 ~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         238 HRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             cCCccceeecCCCCcEEEEecCC
Confidence            56789999997779999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.54  E-value=0.087  Score=50.37  Aligned_cols=112  Identities=12%  Similarity=0.024  Sum_probs=70.8

Q ss_pred             eEEEecCCCe--EEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           98 GLALHYATRQ--LYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        98 Gla~d~~~g~--LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      ...+. ++|+  +|++...   ..|+++|..+++.+.+.. ..+.  +  ....++|++..+.++-..            
T Consensus       192 ~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~--~--~~~~~SPDG~~la~~~~~------------  253 (419)
T PRK04043        192 FPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM--L--VVSDVSKDGSKLLLTMAP------------  253 (419)
T ss_pred             eEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc--E--EeeEECCCCCEEEEEEcc------------
Confidence            45665 4553  6655433   249999999988777653 2221  1  134578853367776432            


Q ss_pred             eecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG  230 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~  230 (310)
                         ..+..||.+|.++++.+.+...-..-....|+|||+.||++...  ...|+++++++
T Consensus       254 ---~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        254 ---KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             ---CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence               12467999998777776654332222345799999988887643  34799999875

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.51  E-value=0.0075  Score=55.64  Aligned_cols=106  Identities=18%  Similarity=0.249  Sum_probs=66.9

Q ss_pred             CCceeEEccCCCEEEEEecCC------CeEEEEEecCCCCCceee-ecC------------CCCCceeeeCCCCCCc-EE
Q 048181          200 GPAGVAISVDSSFLLVSEFTG------NRTLKYWLRGPRANSFDI-INF------------QAKPHNIKRNPGLLQT-FW  259 (310)
Q Consensus       200 ~pnGIa~~~dg~~Lyv~d~~~------~~I~~~~~~~~~~g~~~~-~~l------------~g~Pdgl~~d~~~dG~-l~  259 (310)
                      =+.||++.++|. +||++-..      ++|++|+.+|.......+ ..+            ....-+|++.+  ||. ||
T Consensus        86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLF  162 (326)
T ss_pred             ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECC--CCCEEE
Confidence            456999977775 89998888      999999987643222222 211            13577899999  998 99


Q ss_pred             EEEecCCCCCC-------CCceeeEEECCC--CcEEEEEecCCCc-----cccceeEEEecCC
Q 048181          260 EAAIITRQPAG-------TPVPIGQRISAF--GAVLDTISFEAQY-----STTPISEVQPFGG  308 (310)
Q Consensus       260 va~~~~~~~~~-------~~~~~v~~~~~~--G~~~~~~~~p~~~-----~~~~~t~~~~~~~  308 (310)
                      ++......+-.       ...-+++++|+.  |+....+.-+-..     ....+|++++.++
T Consensus       163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d  225 (326)
T PF13449_consen  163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPD  225 (326)
T ss_pred             EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECC
Confidence            99877622111       112567888865  5444444433111     2247777776554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.064  Score=48.01  Aligned_cols=81  Identities=10%  Similarity=-0.035  Sum_probs=51.0

Q ss_pred             CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCC---CCCceeeeCCCCCCcEEEEEecCCCCCCCC
Q 048181          198 LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQ---AKPHNIKRNPGLLQTFWEAAIITRQPAGTP  272 (310)
Q Consensus       198 l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~---g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~  272 (310)
                      ...-+.|.|||||++|+++.. .+.++.++--   .|+..-  ...+   ..|-..++.+  ||+..++...-+      
T Consensus       187 ~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf---~G~~~~tfs~~~~~~~~~~~a~ftP--ds~Fvl~gs~dg------  254 (311)
T KOG1446|consen  187 EAEWTDLEFSPDGKSILLSTN-ASFIYLLDAF---DGTVKSTFSGYPNAGNLPLSATFTP--DSKFVLSGSDDG------  254 (311)
T ss_pred             ccceeeeEEcCCCCEEEEEeC-CCcEEEEEcc---CCcEeeeEeeccCCCCcceeEEECC--CCcEEEEecCCC------
Confidence            345689999999998888754 4455555421   233221  1111   2455566778  888777766542      


Q ss_pred             ceeeEEEC-CCCcEEEEEecC
Q 048181          273 VPIGQRIS-AFGAVLDTISFE  292 (310)
Q Consensus       273 ~~~v~~~~-~~G~~~~~~~~p  292 (310)
                        .+..++ ..|+.+.+..-|
T Consensus       255 --~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  255 --TIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             --cEEEEEcCCCcEeeEecCC
Confidence              566666 568888888777

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.49  E-value=0.056  Score=46.70  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=59.5

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          104 ATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       104 ~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      .++++|+++....|+.+|.++|+...- ...++ ++..+  ..++  ++.+|+...                  +++|+.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~-~~~~~-~~~~~--~~~~--~~~v~v~~~------------------~~~l~~   90 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWR-FDLPG-PISGA--PVVD--GGRVYVGTS------------------DGSLYA   90 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEE-EECSS-CGGSG--EEEE--TTEEEEEET------------------TSEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE-eeccc-cccce--eeec--ccccccccc------------------eeeeEe
Confidence            589999998777799999988875322 22222 22222  3444  488988763                  257999


Q ss_pred             EcCCCCeEEEee-cC----CCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          184 YNPRSSQVTVLL-RN----LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       184 ~d~~~g~~~~~~-~~----l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      +|..+|++.-.. ..    ...-.......+++.+|+... .+.|+.+++.
T Consensus        91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~  140 (238)
T PF13360_consen   91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPK  140 (238)
T ss_dssp             EETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETT
T ss_pred             cccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecC
Confidence            998788764431 11    111112233333565666654 6777777754

...

>PTZ00421 coronin; Provisional

Probab=97.46  E-value=0.13  Score=50.30  Aligned_cols=161  Identities=13%  Similarity=0.149  Sum_probs=91.7

Q ss_pred             CcceEEEcc-CCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           35 GGESIAFEP-VGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        35 ~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      .-.+++|.| +++++++...++.|..++.... ...-.      ..  +    ...+.........+++++..++++++-
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~------~~--~----l~~L~gH~~~V~~l~f~P~~~~iLaSg  144 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI------SD--P----IVHLQGHTKKVGIVSFHPSAMNVLASA  144 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc------Cc--c----eEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence            346899998 7888888888999888875421 11000      00  0    000111122345788874344555543


Q ss_pred             C-CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 A-YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~-~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      . ...|..+|.++++......   + .-...+.+++++ +|.+.++-..                 +|.|..+|+.+++.
T Consensus       145 s~DgtVrIWDl~tg~~~~~l~---~-h~~~V~sla~sp-dG~lLatgs~-----------------Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        145 GADMVVNVWDVERGKAVEVIK---C-HSDQITSLEWNL-DGSLLCTTSK-----------------DKKLNIIDPRDGTI  202 (493)
T ss_pred             eCCCEEEEEECCCCeEEEEEc---C-CCCceEEEEEEC-CCCEEEEecC-----------------CCEEEEEECCCCcE
Confidence            3 3347777887665322211   1 113467899999 4887776543                 47788888877654


Q ss_pred             EEeecCC--CCCceeEEccCCCEEEEEec---CCCeEEEEEec
Q 048181          192 TVLLRNL--TGPAGVAISVDSSFLLVSEF---TGNRTLKYWLR  229 (310)
Q Consensus       192 ~~~~~~l--~~pnGIa~~~dg~~Lyv~d~---~~~~I~~~~~~  229 (310)
                      ......-  .....+.+.++++.++.+-.   ..+.|..+++.
T Consensus       203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            3222221  12346778888876655432   34677777765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.44  E-value=0.012  Score=55.50  Aligned_cols=135  Identities=11%  Similarity=0.102  Sum_probs=77.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN  123 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~  123 (310)
                      ++.+| +...++.++.++...+.+.+..                    ..+.+..+++  .+++||+++....++.+|.+
T Consensus       256 ~~~vy-~~~~~g~l~ald~~tG~~~W~~--------------------~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~  312 (394)
T PRK11138        256 GGVVY-ALAYNGNLVALDLRSGQIVWKR--------------------EYGSVNDFAV--DGGRIYLVDQNDRVYALDTR  312 (394)
T ss_pred             CCEEE-EEEcCCeEEEEECCCCCEEEee--------------------cCCCccCcEE--ECCEEEEEcCCCeEEEEECC
Confidence            34544 4446788999988765544431                    1112223455  37899998877779999998


Q ss_pred             CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecC--CCCC
Q 048181          124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRN--LTGP  201 (310)
Q Consensus       124 ~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~--l~~p  201 (310)
                      +|+...-.....+...   ...++.  +|.||+.+.                  +|.|+.+|+++|++.--..-  -...
T Consensus       313 tG~~~W~~~~~~~~~~---~sp~v~--~g~l~v~~~------------------~G~l~~ld~~tG~~~~~~~~~~~~~~  369 (394)
T PRK11138        313 GGVELWSQSDLLHRLL---TAPVLY--NGYLVVGDS------------------EGYLHWINREDGRFVAQQKVDSSGFL  369 (394)
T ss_pred             CCcEEEcccccCCCcc---cCCEEE--CCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCcce
Confidence            8864321111112112   233444  489999864                  37888999888875322211  1111


Q ss_pred             ceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          202 AGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       202 nGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                      ...++. ++ .|||. +..+.|+.+.
T Consensus       370 s~P~~~-~~-~l~v~-t~~G~l~~~~  392 (394)
T PRK11138        370 SEPVVA-DD-KLLIQ-ARDGTVYAIT  392 (394)
T ss_pred             eCCEEE-CC-EEEEE-eCCceEEEEe
Confidence            222332 33 68887 4577787775

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.36  E-value=0.077  Score=47.78  Aligned_cols=213  Identities=13%  Similarity=0.109  Sum_probs=120.0

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECC-Cc-eEEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeE
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAP-DG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQL  108 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~-g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~L  108 (310)
                      ...--.+++|.++|+.++++..+..|--++.- |. ...+.+                      ..| .+..+++++.+.
T Consensus        64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf----------------------~spv~~~q~hp~k~n~  121 (405)
T KOG1273|consen   64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF----------------------DSPVWGAQWHPRKRNK  121 (405)
T ss_pred             cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc----------------------cCccceeeeccccCCe
Confidence            33345689999999999999988888888754 33 233332                      223 355565555555


Q ss_pred             EEEe-CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          109 YIAD-AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       109 yVad-~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      .|+. ....-+.++......+.+....++..-..+.-..+|+. |...+|.+                 ..|.+..||..
T Consensus       122 ~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~-g~yIitGt-----------------sKGkllv~~a~  183 (405)
T KOG1273|consen  122 CVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR-GKYIITGT-----------------SKGKLLVYDAE  183 (405)
T ss_pred             EEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC-CCEEEEec-----------------CcceEEEEecc
Confidence            5543 22222233322233344443333321122333356664 55555443                 35889999877


Q ss_pred             CCeEEEee--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEec---CC-CCCceee-----ecCCCCC-ceeeeCCCCC
Q 048181          188 SSQVTVLL--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR---GP-RANSFDI-----INFQAKP-HNIKRNPGLL  255 (310)
Q Consensus       188 ~g~~~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~---~~-~~g~~~~-----~~l~g~P-dgl~~d~~~d  255 (310)
                      +.+.....  .....-.-|-++..|+ .++.++..+.|+.|++.   .. +.+.++.     +-+...+ ..++++.  +
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~--d  260 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG--D  260 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC--C
Confidence            65432211  1123346788999887 56677888888888865   11 2344432     1112223 3477888  9


Q ss_pred             CcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCC
Q 048181          256 QTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQ  294 (310)
Q Consensus       256 G~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~  294 (310)
                      |.+.+|....       ...+..+.. -|.++.+++.+.|
T Consensus       261 geYv~a~s~~-------aHaLYIWE~~~GsLVKILhG~kg  293 (405)
T KOG1273|consen  261 GEYVCAGSAR-------AHALYIWEKSIGSLVKILHGTKG  293 (405)
T ss_pred             ccEEEecccc-------ceeEEEEecCCcceeeeecCCch
Confidence            9777776532       134555554 5888888888765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.36  E-value=0.11  Score=49.87  Aligned_cols=112  Identities=13%  Similarity=0.090  Sum_probs=67.7

Q ss_pred             eeEEEecCCC-eEEEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEe
Q 048181           97 FGLALHYATR-QLYIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKL  171 (310)
Q Consensus        97 ~Gla~d~~~g-~LyVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~  171 (310)
                      ...++. ++| +|+.+...   ..|+.+|.++++.+.+. ...+.    -..++++|+ |+ |+++-...          
T Consensus       207 ~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~g~----~~~~~wSPD-G~~La~~~~~~----------  269 (429)
T PRK01742        207 MSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-SFRGH----NGAPAFSPD-GSRLAFASSKD----------  269 (429)
T ss_pred             ccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-cCCCc----cCceeECCC-CCEEEEEEecC----------
Confidence            356776 455 45443222   24888998887655543 22221    135789995 64 65543211          


Q ss_pred             eeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecC
Q 048181          172 NITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRG  230 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~  230 (310)
                           ..-.||.+|.++++.+.+...-......+|+|||+.|+++...  ..+||.++.++
T Consensus       270 -----g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~  325 (429)
T PRK01742        270 -----GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG  325 (429)
T ss_pred             -----CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence                 1225888888777766665444445689999999987776543  44677776654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.26  E-value=0.017  Score=53.89  Aligned_cols=139  Identities=17%  Similarity=0.224  Sum_probs=76.5

Q ss_pred             CeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCC---CCe----EEEEcCCCccCccceeEeeeecCCC
Q 048181          106 RQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG---TGV----VYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       106 g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~---~G~----lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      ..|+-++-..|++.+|+++.++..+.   .    ..+|.+.+--.   +|+    +.+||....             ...
T Consensus        69 SlIigTdK~~GL~VYdL~Gk~lq~~~---~----Gr~NNVDvrygf~l~g~~vDlavas~R~~g-------------~n~  128 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDGKELQSLP---V----GRPNNVDVRYGFPLNGKTVDLAVASDRSDG-------------RNS  128 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS-EEEEE----S----S-EEEEEEEEEEEETTEEEEEEEEEE-CCC-------------T-E
T ss_pred             ceEEEEeCCCCEEEEcCCCcEEEeec---C----CCcceeeeecceecCCceEEEEEEecCcCC-------------CCe
Confidence            34545666678999999987665441   1    23455444310   111    122332100             001


Q ss_pred             ceEEEEcCCCCeEEEee-------cCCCCCceeEEcc---CCCEEEEEecCCCeEEEEEecCCCCCce--e-e--ecCCC
Q 048181          179 GRLLSYNPRSSQVTVLL-------RNLTGPAGVAISV---DSSFLLVSEFTGNRTLKYWLRGPRANSF--D-I--INFQA  243 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~-------~~l~~pnGIa~~~---dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~-~--~~l~g  243 (310)
                      =++|++|+.++.++.+.       ..+.-|.|+|+-.   +|+...+.....+++..|.+.....|..  + +  ..++.
T Consensus       129 l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s  208 (381)
T PF02333_consen  129 LRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS  208 (381)
T ss_dssp             EEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS
T ss_pred             EEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC
Confidence            15899998878776553       2344578999953   4552222334558888888763333432  2 2  45566


Q ss_pred             CCceeeeCCCCCCcEEEEEecC
Q 048181          244 KPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      -|-|+.+|.+ .|.||+++-..
T Consensus       209 Q~EGCVVDDe-~g~LYvgEE~~  229 (381)
T PF02333_consen  209 QPEGCVVDDE-TGRLYVGEEDV  229 (381)
T ss_dssp             -EEEEEEETT-TTEEEEEETTT
T ss_pred             cceEEEEecc-cCCEEEecCcc
Confidence            7999999986 88999999886

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.25  E-value=0.077  Score=45.11  Aligned_cols=112  Identities=12%  Similarity=0.134  Sum_probs=67.3

Q ss_pred             eeeEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181           96 TFGLALHYATRQLYIADA--YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        96 P~Gla~d~~~g~LyVad~--~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      -..+++.+.+.++.|+..  ...+..+|.++..+..+    ..   ...|.+..+|+ |++.++-...            
T Consensus        62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~----~~---~~~n~i~wsP~-G~~l~~~g~~------------  121 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF----GT---QPRNTISWSPD-GRFLVLAGFG------------  121 (194)
T ss_pred             eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee----cC---CCceEEEECCC-CCEEEEEEcc------------
Confidence            567899744445555543  23477778765433333    11   23578999995 8776653211            


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC-----CCeEEEEEecC
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT-----GNRTLKYWLRG  230 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~-----~~~I~~~~~~~  230 (310)
                        ..+|.|..+|..+.+..... .-.....++|||||+++..+.+.     .+.+..+++.|
T Consensus       122 --n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  122 --NLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             --CCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence              12477888887644432222 22356899999999988777664     33445555554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.22  E-value=0.041  Score=50.48  Aligned_cols=156  Identities=13%  Similarity=0.107  Sum_probs=86.7

Q ss_pred             CCeEEEEeCC-----CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181          105 TRQLYIADAY-----SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       105 ~g~LyVad~~-----~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      ..|+||.|..     .+++.||.++++..-.   .+. . ..+ .+++++++..+|++++......+.        ..+-
T Consensus         2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGm---i~~-g-~~~-~~~~spdgk~~y~a~T~~sR~~rG--------~RtD   67 (342)
T PF06433_consen    2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGM---IDT-G-FLG-NVALSPDGKTIYVAETFYSRGTRG--------ERTD   67 (342)
T ss_dssp             TTEEEEEE-GGGGSSEEEEEEETTTTEEEEE---EEE-E-SSE-EEEE-TTSSEEEEEEEEEEETTEE--------EEEE
T ss_pred             CcEEEEECCccccccceEEEEECCCCcEEEE---eec-c-cCC-ceeECCCCCEEEEEEEEEeccccc--------ccee
Confidence            4689998863     2589999888764322   221 1 123 378899767888877642111111        1112


Q ss_pred             eEEEEcCCCCeEEE--eec------CCCCCceeEEccCCCEEEEEec-CCCeEEEEEecCCCCCceeeecCCCCCceeee
Q 048181          180 RLLSYNPRSSQVTV--LLR------NLTGPAGVAISVDSSFLLVSEF-TGNRTLKYWLRGPRANSFDIINFQAKPHNIKR  250 (310)
Q Consensus       180 ~l~~~d~~~g~~~~--~~~------~l~~pnGIa~~~dg~~Lyv~d~-~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~  250 (310)
                      -|-.||.+|...+.  .+.      .+..++-++++.||+++||.+. ....|.++|+...+. ..+ ...|| -.++--
T Consensus        68 vv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv-v~e-i~~PG-C~~iyP  144 (342)
T PF06433_consen   68 VVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV-VGE-IDTPG-CWLIYP  144 (342)
T ss_dssp             EEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE-EEE-EEGTS-EEEEEE
T ss_pred             EEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce-eee-ecCCC-EEEEEe
Confidence            46778887764432  222      2457899999999999999875 456789999865321 111 33443 222222


Q ss_pred             CCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEE
Q 048181          251 NPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVL  286 (310)
Q Consensus       251 d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~  286 (310)
                      ..  +.++..-|..++       -.-+.+|.+|+..
T Consensus       145 ~~--~~~F~~lC~DGs-------l~~v~Ld~~Gk~~  171 (342)
T PF06433_consen  145 SG--NRGFSMLCGDGS-------LLTVTLDADGKEA  171 (342)
T ss_dssp             EE--TTEEEEEETTSC-------EEEEEETSTSSEE
T ss_pred             cC--CCceEEEecCCc-------eEEEEECCCCCEe
Confidence            23  334555555553       2346677777765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.22  E-value=0.11  Score=49.68  Aligned_cols=171  Identities=15%  Similarity=0.146  Sum_probs=100.0

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      .|.++++.++|.+.++... +.|.-+...++....                     +..-.|.++|+. +++...+.-..
T Consensus       407 QP~~lav~~d~~~avv~~~-~~iv~l~~~~~~~~~---------------------~~~y~~s~vAv~-~~~~~vaVGG~  463 (603)
T KOG0318|consen  407 QPKGLAVLSDGGTAVVACI-SDIVLLQDQTKVSSI---------------------PIGYESSAVAVS-PDGSEVAVGGQ  463 (603)
T ss_pred             CceeEEEcCCCCEEEEEec-CcEEEEecCCcceee---------------------ccccccceEEEc-CCCCEEEEecc
Confidence            6889999999876666653 345555544433321                     233467789997 55555433333


Q ss_pred             Cc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEE-EcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          115 SG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYF-TDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       115 ~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyv-td~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      .+ |..+.+.++.....+...+  .-..+.+++.+|+ |..+. +|.                  ++.+..||..+.++.
T Consensus       464 Dgkvhvysl~g~~l~ee~~~~~--h~a~iT~vaySpd-~~yla~~Da------------------~rkvv~yd~~s~~~~  522 (603)
T KOG0318|consen  464 DGKVHVYSLSGDELKEEAKLLE--HRAAITDVAYSPD-GAYLAAGDA------------------SRKVVLYDVASREVK  522 (603)
T ss_pred             cceEEEEEecCCcccceeeeec--ccCCceEEEECCC-CcEEEEecc------------------CCcEEEEEcccCcee
Confidence            33 6666665544322222111  1234679999995 76554 343                  356777877666553


Q ss_pred             EeecC--CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCC
Q 048181          193 VLLRN--LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNP  252 (310)
Q Consensus       193 ~~~~~--l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~  252 (310)
                      ...-.  -..-|+++|+|+.+ ++.+-+..-.|+.|.++.|... ...  +...+ ...+++-.
T Consensus       523 ~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~-i~iknAH~~g-Vn~v~wld  583 (603)
T KOG0318|consen  523 TNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAKH-IIIKNAHLGG-VNSVAWLD  583 (603)
T ss_pred             cceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChhhh-eEeccccccC-ceeEEEec
Confidence            22111  23569999999975 7778888889999998865322 222  33333 55555544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.19  E-value=0.18  Score=47.81  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=44.2

Q ss_pred             CCc-eEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          177 STG-RLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       177 ~~G-~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      .+| .|-.||.++++++....++..-..+.+++||+.+.++ ..+.+||.++++.
T Consensus       379 ~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-Ndr~el~vididn  432 (668)
T COG4946         379 NDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-NDRFELWVIDIDN  432 (668)
T ss_pred             cCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE-cCceEEEEEEecC
Confidence            345 6888888889999999999988999999999976655 4678899999975

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.16  E-value=0.093  Score=50.72  Aligned_cols=158  Identities=16%  Similarity=0.223  Sum_probs=101.4

Q ss_pred             eCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEEC-CCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           28 LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQA-PDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        28 ~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~-~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      .+.+...+-.+++|.++|..+.....+++|..++. +.+.  +++.                    .-......++++ +
T Consensus       198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~--------------------gH~~~v~~~~f~-p  256 (456)
T KOG0266|consen  198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK--------------------GHSTYVTSVAFS-P  256 (456)
T ss_pred             cccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec--------------------CCCCceEEEEec-C
Confidence            33555667889999999997777777888887777 3322  2221                    122344688997 5


Q ss_pred             CCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          105 TRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       105 ~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      .|+++++-...+ |...|..+++.......    .-...+.+++.+ +|+++++-+.                 +|.+..
T Consensus       257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~----hs~~is~~~f~~-d~~~l~s~s~-----------------d~~i~v  314 (456)
T KOG0266|consen  257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKG----HSDGISGLAFSP-DGNLLVSASY-----------------DGTIRV  314 (456)
T ss_pred             CCCEEEEecCCCcEEEEeccCCeEEEeeec----cCCceEEEEECC-CCCEEEEcCC-----------------CccEEE
Confidence            677777644444 77778777654332221    112457889999 4888777532                 478888


Q ss_pred             EcCCCCeE--EEeecCCCCC---ceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          184 YNPRSSQV--TVLLRNLTGP---AGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       184 ~d~~~g~~--~~~~~~l~~p---nGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      +|..++..  .........+   .-++|+|++++|++. +..+.+.-+++.
T Consensus       315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~  364 (456)
T KOG0266|consen  315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLR  364 (456)
T ss_pred             EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEcc
Confidence            89887773  2333344445   889999999966554 445555555554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.13  E-value=0.17  Score=44.85  Aligned_cols=207  Identities=12%  Similarity=0.130  Sum_probs=123.6

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ..-+++++.++|+..++..-++.++-+|..++.....+         |         .-...-.+++++ .+.+-.|+-.
T Consensus        64 H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f---------~---------GH~~dVlsva~s-~dn~qivSGS  124 (315)
T KOG0279|consen   64 HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF---------V---------GHTKDVLSVAFS-TDNRQIVSGS  124 (315)
T ss_pred             eEecceEEccCCceEEeccccceEEEEEecCCcEEEEE---------E---------ecCCceEEEEec-CCCceeecCC
Confidence            45668899999998888888898888998865432221         1         111234588997 6777766643


Q ss_pred             C-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 Y-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      . +.|...+..++...++....+   -...+-+.++|...+.|+...+                .++.|-.+|.++-++.
T Consensus       125 rDkTiklwnt~g~ck~t~~~~~~---~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~  185 (315)
T KOG0279|consen  125 RDKTIKLWNTLGVCKYTIHEDSH---REWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLR  185 (315)
T ss_pred             CcceeeeeeecccEEEEEecCCC---cCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchh
Confidence            3 337777766654444432211   2456788888853355554332                3456666776554443


Q ss_pred             E-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecCCCCCCC
Q 048181          193 V-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGT  271 (310)
Q Consensus       193 ~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~  271 (310)
                      . ....-.+-|-+++||||. |..+--..++++-.+++..+  ......-..--.-++|.+   ..+|++..-.      
T Consensus       186 ~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k--~lysl~a~~~v~sl~fsp---nrywL~~at~------  253 (315)
T KOG0279|consen  186 TTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK--NLYSLEAFDIVNSLCFSP---NRYWLCAATA------  253 (315)
T ss_pred             hccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc--eeEeccCCCeEeeEEecC---CceeEeeccC------
Confidence            2 233345679999999996 66665566778778876422  122111111245688888   4688776554      


Q ss_pred             CceeeEEECC-CCcEEEEEecC
Q 048181          272 PVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       272 ~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                        ..|..+|- .+++++.+.+.
T Consensus       254 --~sIkIwdl~~~~~v~~l~~d  273 (315)
T KOG0279|consen  254 --TSIKIWDLESKAVVEELKLD  273 (315)
T ss_pred             --CceEEEeccchhhhhhcccc
Confidence              24666664 35556555543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.09  E-value=0.29  Score=48.27  Aligned_cols=124  Identities=12%  Similarity=0.142  Sum_probs=64.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN  123 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~  123 (310)
                      +|. +|+....+.|+.++...+...+........       .............|+++.  ++++|++.....++.+|.+
T Consensus        69 ~g~-vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~-------~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~  138 (527)
T TIGR03075        69 DGV-MYVTTSYSRVYALDAKTGKELWKYDPKLPD-------DVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAK  138 (527)
T ss_pred             CCE-EEEECCCCcEEEEECCCCceeeEecCCCCc-------ccccccccccccccceEE--CCEEEEEcCCCEEEEEECC
Confidence            455 555556788999998866555542110000       000000000112467774  7899998777779999999


Q ss_pred             CCeEEEeeccCCCc-cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          124 GRLATQLATGAEGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       124 ~~~~~~~~~~~~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      +|+..--....+-. ......--++.  +|.||+......            ...+|.|+.+|..+|+.
T Consensus       139 TGk~~W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~------------~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       139 TGKVVWSKKNGDYKAGYTITAAPLVV--KGKVITGISGGE------------FGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             CCCEEeecccccccccccccCCcEEE--CCEEEEeecccc------------cCCCcEEEEEECCCCce
Confidence            88763211111100 00111122333  478888754321            12346677777766654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.08  E-value=0.26  Score=47.60  Aligned_cols=186  Identities=15%  Similarity=0.194  Sum_probs=104.9

Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC-C
Q 048181           37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY-S  115 (310)
Q Consensus        37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~-~  115 (310)
                      -.+.+.++|+.+.....++.|.-+..........                ..+......-..+++. .++...++-.. .
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~----------------~~l~~h~~~v~~~~fs-~d~~~l~s~s~D~  225 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLL----------------RELSGHTRGVSDVAFS-PDGSYLLSGSDDK  225 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccchhh----------------ccccccccceeeeEEC-CCCcEEEEecCCc
Confidence            3466778888655554555555555432220000                0000112234578886 67876665433 3


Q ss_pred             cEEEEeC-CCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          116 GLLVVGP-NGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       116 gi~~id~-~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      .|..+|. +.+.. +++    .| +....+.++++++ |+++++-+.                 ++.+..+|..+++...
T Consensus       226 tiriwd~~~~~~~~~~l----~g-H~~~v~~~~f~p~-g~~i~Sgs~-----------------D~tvriWd~~~~~~~~  282 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTL----KG-HSTYVTSVAFSPD-GNLLVSGSD-----------------DGTVRIWDVRTGECVR  282 (456)
T ss_pred             eEEEeeccCCCeEEEEe----cC-CCCceEEEEecCC-CCEEEEecC-----------------CCcEEEEeccCCeEEE
Confidence            3555665 33332 222    22 3356689999995 888887653                 4677778887776655


Q ss_pred             eecCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC-ceeeecC--CCCCceeeeCCCCCCcEEEEEecC
Q 048181          194 LLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN-SFDIINF--QAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       194 ~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g-~~~~~~l--~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ....- ..-++++|++||+.|+.+ +..+.|..+++...... ..++...  +..-.-+.+++  +|.+.+.....
T Consensus       283 ~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp--~~~~ll~~~~d  355 (456)
T KOG0266|consen  283 KLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP--NGKYLLSASLD  355 (456)
T ss_pred             eeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC--CCcEEEEecCC
Confidence            44433 355889999999865555 66889999988643211 0111111  11125677777  88665555544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.06  E-value=0.026  Score=53.15  Aligned_cols=185  Identities=6%  Similarity=0.060  Sum_probs=111.0

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS  115 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~  115 (310)
                      -..+.|..+|.-+.+...++.|.-+|.+.+.....+                   .....|.-+.+++.+.++|++-...
T Consensus       261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f-------------------~~~~~~~cvkf~pd~~n~fl~G~sd  321 (503)
T KOG0282|consen  261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF-------------------HLDKVPTCVKFHPDNQNIFLVGGSD  321 (503)
T ss_pred             hhhhhccccCCeeeeeecceeeeeeccccceEEEEE-------------------ecCCCceeeecCCCCCcEEEEecCC
Confidence            456777777777777777777777777755433221                   1223456677875454888876554


Q ss_pred             -cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe-EEE
Q 048181          116 -GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-VTV  193 (310)
Q Consensus       116 -gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-~~~  193 (310)
                       .|..+|..++++   ...++ ..+...|++.+-+ +|+=+++.+..                 +.+..++-...- .+.
T Consensus       322 ~ki~~wDiRs~kv---vqeYd-~hLg~i~~i~F~~-~g~rFissSDd-----------------ks~riWe~~~~v~ik~  379 (503)
T KOG0282|consen  322 KKIRQWDIRSGKV---VQEYD-RHLGAILDITFVD-EGRRFISSSDD-----------------KSVRIWENRIPVPIKN  379 (503)
T ss_pred             CcEEEEeccchHH---HHHHH-hhhhheeeeEEcc-CCceEeeeccC-----------------ccEEEEEcCCCccchh
Confidence             499999887763   34443 4567789999998 48877876542                 223333221111 111


Q ss_pred             eec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce-ee---ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          194 LLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF-DI---INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       194 ~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~-~~---~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ... ....=-.|+++|.++ .+.+++..++|..|...-+..-.. +.   -..+|++-.+.+.+  ||.+.++-..
T Consensus       380 i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp--DG~~l~SGds  452 (503)
T KOG0282|consen  380 IADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP--DGRTLCSGDS  452 (503)
T ss_pred             hcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC--CCCeEEeecC
Confidence            111 111113688999998 788999999999987654322111 11   22356777777777  7766555444

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.073  Score=47.66  Aligned_cols=110  Identities=11%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             eEEEecCCCeEEEEeCCC-cEEEEeCCC---CeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181           98 GLALHYATRQLYIADAYS-GLLVVGPNG---RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~-gi~~id~~~---~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      -.|+| ++|-++++-.+. .|..+|...   |-.+.+.  +.......-++|.+++++-.+.+++..             
T Consensus       145 i~AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~--i~~~~~~ew~~l~FS~dGK~iLlsT~~-------------  208 (311)
T KOG1446|consen  145 IAAFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFS--ITDNDEAEWTDLEFSPDGKSILLSTNA-------------  208 (311)
T ss_pred             ceeEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEc--cCCCCccceeeeEEcCCCCEEEEEeCC-------------
Confidence            35787 688777654444 466677643   2122221  111234456899999963345566543             


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCC----CCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLT----GPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~----~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                           +.++.+|.-+|.+..-.....    .|-+-+|+||+++++ +-...++|..|.+.
T Consensus       209 -----s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl-~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  209 -----SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL-SGSDDGTIHVWNLE  262 (311)
T ss_pred             -----CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE-EecCCCcEEEEEcC
Confidence                 456777766666544333333    344888999999654 55567888888774

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.95  E-value=0.19  Score=46.37  Aligned_cols=131  Identities=21%  Similarity=0.268  Sum_probs=73.2

Q ss_pred             ceeeEEEecCCCeEEEEeCCC-------cEEEEeCCCCeEEEee--ccC-------CC-ccccCccceEEeCCCCe-EEE
Q 048181           95 RTFGLALHYATRQLYIADAYS-------GLLVVGPNGRLATQLA--TGA-------EG-QAFHFLDGLDVDQGTGV-VYF  156 (310)
Q Consensus        95 ~P~Gla~d~~~g~LyVad~~~-------gi~~id~~~~~~~~~~--~~~-------~g-~~~~~pndvavd~~~G~-lyv  156 (310)
                      .+-||++. .+|.+||++.+.       .|+++++++...+.+.  ...       .+ +.=....+|+++++ |+ ||+
T Consensus        86 D~Egi~~~-~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~d-G~~l~~  163 (326)
T PF13449_consen   86 DPEGIAVP-PDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPD-GRTLFA  163 (326)
T ss_pred             ChhHeEEe-cCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCC-CCEEEE
Confidence            45599994 899999987544       5999998854333331  111       11 11123568999995 76 887


Q ss_pred             EcCCCccCccceeEeeeecCCCceEEEEcCCC-C----eEEEeec------CCCCCceeEEccCCCEEEEEecC------
Q 048181          157 TDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-S----QVTVLLR------NLTGPAGVAISVDSSFLLVSEFT------  219 (310)
Q Consensus       157 td~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-g----~~~~~~~------~l~~pnGIa~~~dg~~Lyv~d~~------  219 (310)
                      .--+.........  .......-++++||+.+ +    +.....+      .-..+..|++-+|++ |||-|-.      
T Consensus       164 ~~E~~l~~d~~~~--~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~  240 (326)
T PF13449_consen  164 AMESPLKQDGPRA--NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTG  240 (326)
T ss_pred             EECccccCCCccc--ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCcc
Confidence            6543311110000  00011124688888765 2    1122223      234556777888887 7787654      


Q ss_pred             -CCeEEEEEecC
Q 048181          220 -GNRTLKYWLRG  230 (310)
Q Consensus       220 -~~~I~~~~~~~  230 (310)
                       ..+|+++++..
T Consensus       241 ~~~ri~~v~l~~  252 (326)
T PF13449_consen  241 NYKRIYRVDLSD  252 (326)
T ss_pred             ceEEEEEEEccc
Confidence             34677777653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.89  E-value=0.14  Score=48.20  Aligned_cols=155  Identities=14%  Similarity=0.158  Sum_probs=88.4

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee-eEEEecCCCe-EEEEe
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF-GLALHYATRQ-LYIAD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~-Gla~d~~~g~-LyVad  112 (310)
                      +-.++-|+|.-.++.+.-.++++.-+.-+|+.-.... +                ..-...|. -.++. ++|. ..++.
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lq-S----------------~~l~~fPi~~a~f~-p~G~~~i~~s  276 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQ-S----------------IHLEKFPIQKAEFA-PNGHSVIFTS  276 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChhhe-e----------------eeeccCccceeeec-CCCceEEEec
Confidence            4457889988777888766776555544443211100 0                01112343 23454 5665 33333


Q ss_pred             CCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      ..+. ++.+|+.++++..+.. ..|.+-.+..-..|+++ +++.....                 .+|.|+.+...|++.
T Consensus       277 ~rrky~ysyDle~ak~~k~~~-~~g~e~~~~e~FeVShd-~~fia~~G-----------------~~G~I~lLhakT~el  337 (514)
T KOG2055|consen  277 GRRKYLYSYDLETAKVTKLKP-PYGVEEKSMERFEVSHD-SNFIAIAG-----------------NNGHIHLLHAKTKEL  337 (514)
T ss_pred             ccceEEEEeeccccccccccC-CCCcccchhheeEecCC-CCeEEEcc-----------------cCceEEeehhhhhhh
Confidence            3322 8889998887766532 23322233455677774 66544332                 247777777666543


Q ss_pred             EEeecCCC---CCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          192 TVLLRNLT---GPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       192 ~~~~~~l~---~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                         +..+.   ...+++|+.|++.||++. ..+.||.+++..
T Consensus       338 ---i~s~KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~  375 (514)
T KOG2055|consen  338 ---ITSFKIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQ  375 (514)
T ss_pred             ---hheeeeccEEeeEEEecCCcEEEEEc-CCceEEEEecCC
Confidence               22222   346899999998777664 556999998864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=96.86  E-value=0.3  Score=46.65  Aligned_cols=189  Identities=15%  Similarity=0.158  Sum_probs=107.2

Q ss_pred             cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      .+++.+++|.++..++-++-.. +. ++++...+.|++=+..++......                   -....-.|++.
T Consensus       318 ~k~r~~elPe~~G~iRtv~e~~-~d-i~vGTtrN~iL~Gt~~~~f~~~v~-------------------gh~delwgla~  376 (626)
T KOG2106|consen  318 RKLRETELPEQFGPIRTVAEGK-GD-ILVGTTRNFILQGTLENGFTLTVQ-------------------GHGDELWGLAT  376 (626)
T ss_pred             cccccccCchhcCCeeEEecCC-Cc-EEEeeccceEEEeeecCCceEEEE-------------------ecccceeeEEc
Confidence            4677889998888887777443 34 788888888887766655432211                   01125679999


Q ss_pred             ecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181          102 HYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       102 d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      + ....+|++....+ +...+ + .+.. +....+. +   ..-+.++| .|.+-+..                  ..|+
T Consensus       377 h-ps~~q~~T~gqdk~v~lW~-~-~k~~-wt~~~~d-~---~~~~~fhp-sg~va~Gt------------------~~G~  429 (626)
T KOG2106|consen  377 H-PSKNQLLTCGQDKHVRLWN-D-HKLE-WTKIIED-P---AECADFHP-SGVVAVGT------------------ATGR  429 (626)
T ss_pred             C-CChhheeeccCcceEEEcc-C-Ccee-EEEEecC-c---eeEeeccC-cceEEEee------------------ccce
Confidence            7 5677777655544 33334 2 2221 1111111 1   12456777 46433322                  2478


Q ss_pred             EEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce--eeecCCC-CCceeeeCCCCCCc
Q 048181          181 LLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF--DIINFQA-KPHNIKRNPGLLQT  257 (310)
Q Consensus       181 l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~~~~l~g-~Pdgl~~d~~~dG~  257 (310)
                      .+.+|..+.....+...-..-+-+.++|||.+| ..-+..+.|+.|.++..  |..  ++....+ .-..|.+..  |++
T Consensus       430 w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l-Avgs~d~~iyiy~Vs~~--g~~y~r~~k~~gs~ithLDwS~--Ds~  504 (626)
T KOG2106|consen  430 WFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL-AVGSHDNHIYIYRVSAN--GRKYSRVGKCSGSPITHLDWSS--DSQ  504 (626)
T ss_pred             EEEEecccceeEEEEecCCceEEEEEcCCCCEE-EEecCCCeEEEEEECCC--CcEEEEeeeecCceeEEeeecC--CCc
Confidence            888887654433333233334789999999855 44567788888887643  322  1111122 224566666  666


Q ss_pred             EEEEEe
Q 048181          258 FWEAAI  263 (310)
Q Consensus       258 l~va~~  263 (310)
                      +.++..
T Consensus       505 ~~~~~S  510 (626)
T KOG2106|consen  505 FLVSNS  510 (626)
T ss_pred             eEEecc
Confidence            666543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.85  E-value=0.093  Score=49.10  Aligned_cols=132  Identities=14%  Similarity=0.104  Sum_probs=72.3

Q ss_pred             EEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCe
Q 048181           47 AFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRL  126 (310)
Q Consensus        47 l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~  126 (310)
                      .+|+...++.++.++...+...+..                    ........++  .++++|+++....++.+|.++|+
T Consensus       243 ~vy~~~~~g~l~a~d~~tG~~~W~~--------------------~~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       243 QVYAVSYQGRVAALDLRSGRVLWKR--------------------DASSYQGPAV--DDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             EEEEEEcCCEEEEEECCCCcEEEee--------------------ccCCccCceE--eCCEEEEECCCCeEEEEECCCCc
Confidence            3455556778888887654433321                    0112233455  37899998766569999998876


Q ss_pred             EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCC--CCCcee
Q 048181          127 ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL--TGPAGV  204 (310)
Q Consensus       127 ~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l--~~pnGI  204 (310)
                      ...-.....+.....|   ++.  ++.+|+.+.                  +|.|+.+|+++|+..-.....  ......
T Consensus       301 ~~W~~~~~~~~~~ssp---~i~--g~~l~~~~~------------------~G~l~~~d~~tG~~~~~~~~~~~~~~~sp  357 (377)
T TIGR03300       301 ELWKNDELKYRQLTAP---AVV--GGYLVVGDF------------------EGYLHWLSREDGSFVARLKTDGSGIASPP  357 (377)
T ss_pred             EEEccccccCCccccC---EEE--CCEEEEEeC------------------CCEEEEEECCCCCEEEEEEcCCCccccCC
Confidence            4321112222222222   343  478888764                  478999998888764322211  112222


Q ss_pred             EEccCCCEEEEEecCCCeEEEE
Q 048181          205 AISVDSSFLLVSEFTGNRTLKY  226 (310)
Q Consensus       205 a~~~dg~~Lyv~d~~~~~I~~~  226 (310)
                      ++. ++ .||+.. ..+.|+.|
T Consensus       358 ~~~-~~-~l~v~~-~dG~l~~~  376 (377)
T TIGR03300       358 VVV-GD-GLLVQT-RDGDLYAF  376 (377)
T ss_pred             EEE-CC-EEEEEe-CCceEEEe
Confidence            333 33 477664 46666655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.83  E-value=0.78  Score=47.57  Aligned_cols=163  Identities=10%  Similarity=0.030  Sum_probs=90.2

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-eC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-DA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d~  113 (310)
                      .-.+++|+++|+++.+...++.|..++.......-.    ..  ..+    .... ........+++++..+..+++ +.
T Consensus       485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----~~--~~~----~~~~-~~~~~v~~l~~~~~~~~~las~~~  553 (793)
T PLN00181        485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----DI--HYP----VVEL-ASRSKLSGICWNSYIKSQVASSNF  553 (793)
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc----cc--ccc----eEEe-cccCceeeEEeccCCCCEEEEEeC
Confidence            456799999999888888889888887542110000    00  000    0000 011234567776434444444 33


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ...|..+|..+++.....   .+ +-.....+++++.++.+++|-..                 +|.+..+|..++....
T Consensus       554 Dg~v~lWd~~~~~~~~~~---~~-H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        554 EGVVQVWDVARSQLVTEM---KE-HEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIG  612 (793)
T ss_pred             CCeEEEEECCCCeEEEEe---cC-CCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEE
Confidence            334667787765432211   11 12345688888644777766543                 3667777766554332


Q ss_pred             eecCCCCCceeEEc-cCCCEEEEEecCCCeEEEEEecC
Q 048181          194 LLRNLTGPAGVAIS-VDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       194 ~~~~l~~pnGIa~~-~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      ....-.....+.|+ ++|+ ++++-+..+.|+.|++..
T Consensus       613 ~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        613 TIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             EEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence            22222334667775 4565 566667888999998864

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.83  E-value=0.019  Score=52.56  Aligned_cols=119  Identities=13%  Similarity=0.042  Sum_probs=71.5

Q ss_pred             CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC---------e
Q 048181          152 GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN---------R  222 (310)
Q Consensus       152 G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~---------~  222 (310)
                      .++||.|....             .-.++++.+|.+++++.=+++.-..+| ++++|||+.+|++++.=.         -
T Consensus         3 ~rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv   68 (342)
T PF06433_consen    3 HRVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV   68 (342)
T ss_dssp             TEEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence            68999997531             123699999999998876666555666 789999999999997321         2


Q ss_pred             EEEEEecCCC-CCceee-e--cC--CCCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCC
Q 048181          223 TLKYWLRGPR-ANSFDI-I--NF--QAKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEA  293 (310)
Q Consensus       223 I~~~~~~~~~-~g~~~~-~--~l--~g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~  293 (310)
                      |..||...-. .++.++ .  ..  -.++..+++..  ||. +||.-...-       ..|-.+| ..+|++..+..|.
T Consensus        69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~--dgk~~~V~N~TPa-------~SVtVVDl~~~kvv~ei~~PG  138 (342)
T PF06433_consen   69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA--DGKFLYVQNFTPA-------TSVTVVDLAAKKVVGEIDTPG  138 (342)
T ss_dssp             EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T--TSSEEEEEEESSS-------EEEEEEETTTTEEEEEEEGTS
T ss_pred             EEEEecCcCcccceEecCCcchheecccccceEEcc--CCcEEEEEccCCC-------CeEEEEECCCCceeeeecCCC
Confidence            4455543210 111222 1  11  12567788888  785 677665542       4566666 4567777777763

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.81  E-value=0.22  Score=48.62  Aligned_cols=200  Identities=13%  Similarity=0.114  Sum_probs=98.8

Q ss_pred             eEEEccCCCEEEEEeCCC------------------eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeE
Q 048181           38 SIAFEPVGGAFYTGVADG------------------RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGL   99 (310)
Q Consensus        38 gia~d~~G~l~~~d~~~g------------------~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gl   99 (310)
                      .+++|+.+.++|+...++                  +|+.++.+.+...+......        .....+ .....|.-.
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~--------~~~~~~-~~~s~p~~~  291 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP--------HDLWDY-DGPNQPSLA  291 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC--------CCCccc-ccCCCCeEE
Confidence            467887666677776554                  79999988666555421100        000000 011112111


Q ss_pred             EEecCCC----eEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181          100 ALHYATR----QLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus       100 a~d~~~g----~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      .+...+|    .+|+......++.+|+++|+..-- ....      -.+++.++  +.+|+...........-.......
T Consensus       292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~-~~~~------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~  362 (488)
T cd00216         292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA-RPEV------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKK  362 (488)
T ss_pred             eccccCCCeeEEEEEECCCceEEEEECCCCcEeeE-eEee------ccccccCC--ceEEEccccccccCcccccCCCCC
Confidence            1100123    356554444488999988875321 1111      12455564  788885322100000000000011


Q ss_pred             CCCceEEEEcCCCCeEEEeecCCC---------CC--c-eeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC
Q 048181          176 DSTGRLLSYNPRSSQVTVLLRNLT---------GP--A-GVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ  242 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~~~l~---------~p--n-GIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~  242 (310)
                      ..+|+|+.+|..+|+..--. ...         .|  . .++.  .++.||+.+ ..++|+.++.+.   |+..- ..++
T Consensus       363 ~~~G~l~AlD~~tG~~~W~~-~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~t---G~~lW~~~~~  435 (488)
T cd00216         363 PGKGGLAALDPKTGKVVWEK-REGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATT---GKELWKFRTP  435 (488)
T ss_pred             CCceEEEEEeCCCCcEeeEe-eCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCC---CceeeEEECC
Confidence            24688999999888753221 111         11  1 2333  345688876 678888888643   33211 2222


Q ss_pred             ----CCCceeeeCCCCCCcEEEEEecCC
Q 048181          243 ----AKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       243 ----g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                          ..|  +....  +|++||+...+.
T Consensus       436 ~~~~a~P--~~~~~--~g~~yv~~~~g~  459 (488)
T cd00216         436 SGIQATP--MTYEV--NGKQYVGVMVGG  459 (488)
T ss_pred             CCceEcC--EEEEe--CCEEEEEEEecC
Confidence                223  44566  799999987763

The alignment model contains an 8-bladed beta-propeller.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.78  E-value=0.57  Score=46.23  Aligned_cols=113  Identities=12%  Similarity=0.140  Sum_probs=60.0

Q ss_pred             cceEEeCCCCeEEEEcCCCccCccc----------eeEe---e--eecCCCceEEEEcCCCCeEEEeecCCCCC-ceeEE
Q 048181          143 DGLDVDQGTGVVYFTDASGVYDFRT----------IVKL---N--ITNDSTGRLLSYNPRSSQVTVLLRNLTGP-AGVAI  206 (310)
Q Consensus       143 ndvavd~~~G~lyvtd~~~~~~~~~----------~~~~---~--~~~~~~G~l~~~d~~~g~~~~~~~~l~~p-nGIa~  206 (310)
                      ..+++||+.|.+|+...........          +...   .  ....+.|.|.-+|+.+|++.-... ...| .+-.+
T Consensus       390 ~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~-~~~p~~~~~l  468 (527)
T TIGR03075       390 QPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHK-EDFPLWGGVL  468 (527)
T ss_pred             CCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEec-CCCCCCCcce
Confidence            4589999888888865442111100          0000   0  011246889999999997643222 2222 22223


Q ss_pred             ccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC----CCCceeeeCCCCCCcEEEEEec
Q 048181          207 SVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ----AKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       207 ~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~----g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .-.|. ||+.-+.++.++.||...   |+..- ..++    +.|  |....  +|+.||+...
T Consensus       469 ~t~g~-lvf~g~~~G~l~a~D~~T---Ge~lw~~~~g~~~~a~P--~ty~~--~G~qYv~~~~  523 (527)
T TIGR03075       469 ATAGD-LVFYGTLEGYFKAFDAKT---GEELWKFKTGSGIVGPP--VTYEQ--DGKQYVAVLS  523 (527)
T ss_pred             EECCc-EEEEECCCCeEEEEECCC---CCEeEEEeCCCCceecC--EEEEe--CCEEEEEEEe
Confidence            33455 444456678899998653   43221 2232    223  44445  7899988654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.73  E-value=0.087  Score=46.98  Aligned_cols=114  Identities=17%  Similarity=0.116  Sum_probs=71.4

Q ss_pred             eEEEEcCCCCeEE-Eeec---CCCCCceeEEccCCCEEEEEec----CCCeEEEEEecCCCCCceeeecCCCCCceeeeC
Q 048181          180 RLLSYNPRSSQVT-VLLR---NLTGPAGVAISVDSSFLLVSEF----TGNRTLKYWLRGPRANSFDIINFQAKPHNIKRN  251 (310)
Q Consensus       180 ~l~~~d~~~g~~~-~~~~---~l~~pnGIa~~~dg~~Lyv~d~----~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d  251 (310)
                      ..+.+|+++.+.- ++..   .-.+--|+ ||+||++||.+|.    ..+.|-.|+.........|....--.|.-+.+-
T Consensus        92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGv-fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm  170 (366)
T COG3490          92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGV-FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM  170 (366)
T ss_pred             eEEEECCCCCcCcEEEecccCceeecccc-cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEe
Confidence            3456676644322 2211   11234565 9999999999875    456677887653211111221111149999999


Q ss_pred             CCCCCcEEEEEecCC--CCC--------CCCceeeEEEC-CCCcEEEEEecCCCcc
Q 048181          252 PGLLQTFWEAAIITR--QPA--------GTPVPIGQRIS-AFGAVLDTISFEAQYS  296 (310)
Q Consensus       252 ~~~dG~l~va~~~~~--~~~--------~~~~~~v~~~~-~~G~~~~~~~~p~~~~  296 (310)
                      .  ||.+.|...++.  +|.        -..+|.++-+| .+|++++...+|+..+
T Consensus       171 ~--DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~  224 (366)
T COG3490         171 A--DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR  224 (366)
T ss_pred             c--CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence            9  999888777742  221        14567888888 7999999999996543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.68  E-value=0.47  Score=44.41  Aligned_cols=197  Identities=13%  Similarity=0.093  Sum_probs=101.9

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee-eEEEecCCCeEEEEeCCCcEEE
Q 048181           41 FEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF-GLALHYATRQLYIADAYSGLLV  119 (310)
Q Consensus        41 ~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~-Gla~d~~~g~LyVad~~~gi~~  119 (310)
                      .+.+|. +|+...+|+|+.++++++...+...        +.        ....... ++..  .+|+||+.+....++.
T Consensus        65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~--------~~--------~~~~~~~~~~~~--~~G~i~~g~~~g~~y~  125 (370)
T COG1520          65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYP--------LL--------GAVAQLSGPILG--SDGKIYVGSWDGKLYA  125 (370)
T ss_pred             EeeCCe-EEEecCCCcEEEEeCCCCcEEeccc--------Cc--------CcceeccCceEE--eCCeEEEecccceEEE
Confidence            455666 4555678889999988665444211        00        0011122 3444  3899999877656999


Q ss_pred             EeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec---
Q 048181          120 VGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR---  196 (310)
Q Consensus       120 id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~---  196 (310)
                      +|.++|+.... ....+. ........+.  ++.+|+...                  +|.++.++.++|+..-..+   
T Consensus       126 ld~~~G~~~W~-~~~~~~-~~~~~~~v~~--~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~  183 (370)
T COG1520         126 LDASTGTLVWS-RNVGGS-PYYASPPVVG--DGTVYVGTD------------------DGHLYALNADTGTLKWTYETPA  183 (370)
T ss_pred             EECCCCcEEEE-EecCCC-eEEecCcEEc--CcEEEEecC------------------CCeEEEEEccCCcEEEEEecCC
Confidence            99966654322 222221 2223333333  588888741                  2567788877775432211   


Q ss_pred             --CCCCCceeEEccCCCEEEEEecC-CCeEEEEEec-CCCCCceee---ec------CCCCCceeeeCCCCCCcEEEEEe
Q 048181          197 --NLTGPAGVAISVDSSFLLVSEFT-GNRTLKYWLR-GPRANSFDI---IN------FQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       197 --~l~~pnGIa~~~dg~~Lyv~d~~-~~~I~~~~~~-~~~~g~~~~---~~------l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                        .+......+ ..++ .+|+.... +.+++.++.. |......+.   .+      .+. -++-.+..  ++.+|...+
T Consensus       184 ~~~~~~~~~~~-~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~-~~~~~v~v--~~~~~~~~~  258 (370)
T COG1520         184 PLSLSIYGSPA-IASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPA-VDGGPVYV--DGGVYAGSY  258 (370)
T ss_pred             ccccccccCce-eecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCccccccccc-ccCceEEE--CCcEEEEec
Confidence              222223333 3444 47776554 4477777773 322112111   01      111 12222333  445555555


Q ss_pred             cCCCCCCCCceeeEEEC-CCCcEEEEEecC
Q 048181          264 ITRQPAGTPVPIGQRIS-AFGAVLDTISFE  292 (310)
Q Consensus       264 ~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p  292 (310)
                      ..         .+.+++ ++|+.+-..+.+
T Consensus       259 ~g---------~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         259 GG---------KLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             CC---------eEEEEEcCCCceEEEEecc
Confidence            53         466666 458877777775

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.67  E-value=0.29  Score=48.58  Aligned_cols=191  Identities=9%  Similarity=-0.002  Sum_probs=104.7

Q ss_pred             cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCC----eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee
Q 048181           22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADG----RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF   97 (310)
Q Consensus        22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g----~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~   97 (310)
                      ....++.+++   .|..++++++|..+|+...|.    .+..++....-..+.+                       .+.
T Consensus       226 eV~~qV~Vdg---npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf-----------------------ni~  279 (635)
T PRK02888        226 EVAWQVMVDG---NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF-----------------------NIA  279 (635)
T ss_pred             eEEEEEEeCC---CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE-----------------------chH
Confidence            3456678886   689999999999888886432    2333332211111110                       011


Q ss_pred             e-EEEecCCCeEEEEeCCCcEEEEeCCC----C-eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181           98 G-LALHYATRQLYIADAYSGLLVVGPNG----R-LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus        98 G-la~d~~~g~LyVad~~~gi~~id~~~----~-~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~  171 (310)
                      + .++.......||.  .+.|.+||..+    + .+....  .-+   ++|.+++++|++..+|++....          
T Consensus       280 ~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI--PVG---KsPHGV~vSPDGkylyVanklS----------  342 (635)
T PRK02888        280 RIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV--PVP---KNPHGVNTSPDGKYFIANGKLS----------  342 (635)
T ss_pred             HHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE--ECC---CCccceEECCCCCEEEEeCCCC----------
Confidence            1 1121123345552  34588898776    2 222111  112   5789999999755688887532          


Q ss_pred             eeecCCCceEEEEcCCCCe------------EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC---CCCc-
Q 048181          172 NITNDSTGRLLSYNPRSSQ------------VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP---RANS-  235 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g~------------~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~---~~g~-  235 (310)
                             ..+..+|..+.+            +..-..--..|--.+|+++|+ .|++-.-..+|.+++++..   ..|. 
T Consensus       343 -------~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~  414 (635)
T PRK02888        343 -------PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEK  414 (635)
T ss_pred             -------CcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhcccc
Confidence                   233344432211            111111124788999999997 9999999999999987631   0111 


Q ss_pred             -eee-ecCC--C------CCceeeeCCCCCCcEEEEEecC
Q 048181          236 -FDI-INFQ--A------KPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       236 -~~~-~~l~--g------~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                       ..+ ..++  -      .+.|=+.++  ||...++..-.
T Consensus       415 ~~~v~~k~dV~y~pgh~~~~~g~t~~~--dgk~l~~~nk~  452 (635)
T PRK02888        415 VDPIVQKLDVHYQPGHNHASMGETKEA--DGKWLVSLNKF  452 (635)
T ss_pred             CCcceecccCCCccceeeecCCCcCCC--CCCEEEEcccc
Confidence             112 2221  1      234444477  99888887654

>PTZ00421 coronin; Provisional

Probab=96.65  E-value=0.75  Score=44.98  Aligned_cols=160  Identities=10%  Similarity=0.042  Sum_probs=87.2

Q ss_pred             CcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           35 GGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        35 ~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ....++|.|++ +++++...++.|.-++...+......                  .........+++. .+|.++++-.
T Consensus       127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l------------------~~h~~~V~sla~s-pdG~lLatgs  187 (493)
T PTZ00421        127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI------------------KCHSDQITSLEWN-LDGSLLCTTS  187 (493)
T ss_pred             cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE------------------cCCCCceEEEEEE-CCCCEEEEec
Confidence            45678999875 67778788899988887643321110                  0112234678897 6787776654


Q ss_pred             CCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe--
Q 048181          114 YSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ--  190 (310)
Q Consensus       114 ~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~--  190 (310)
                      ..+ |..+|+.+++...-.   .+..-.....+...++ +..++|-...             ...++.+..+|..+..  
T Consensus       188 ~Dg~IrIwD~rsg~~v~tl---~~H~~~~~~~~~w~~~-~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p  250 (493)
T PTZ00421        188 KDKKLNIIDPRDGTIVSSV---EAHASAKSQRCLWAKR-KDLIITLGCS-------------KSQQRQIMLWDTRKMASP  250 (493)
T ss_pred             CCCEEEEEECCCCcEEEEE---ecCCCCcceEEEEcCC-CCeEEEEecC-------------CCCCCeEEEEeCCCCCCc
Confidence            444 777898776532111   1111011123444553 3344432110             1124667777765332  


Q ss_pred             EEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          191 VTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       191 ~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      ..... +......-..+++|++.||++-...+.|+.|++..
T Consensus       251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            11111 11111223468899998888876788888888864

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.62  E-value=0.021  Score=55.17  Aligned_cols=128  Identities=13%  Similarity=0.157  Sum_probs=75.6

Q ss_pred             CCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC-------eEEEee--------cC--
Q 048181          135 EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS-------QVTVLL--------RN--  197 (310)
Q Consensus       135 ~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g-------~~~~~~--------~~--  197 (310)
                      ...++-+|.++++.|..|.+|++.+.+.-...+-. ..-....-|.|+||-+.++       +.+.+.        +.  
T Consensus       412 GAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~a-Npr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~  490 (616)
T COG3211         412 GATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAA-NPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA  490 (616)
T ss_pred             CCccccCccceeecCCcceEEEEeCCCCccccccC-CCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc
Confidence            34578899999999988899999887541100000 0001123477888876554       333322        11  


Q ss_pred             --------CCCCceeEEccCCCEEEEEecCCC--------eEEEEEecCCCCCceee-ecCC--CCCceeeeCCCCCC-c
Q 048181          198 --------LTGPAGVAISVDSSFLLVSEFTGN--------RTLKYWLRGPRANSFDI-INFQ--AKPHNIKRNPGLLQ-T  257 (310)
Q Consensus       198 --------l~~pnGIa~~~dg~~Lyv~d~~~~--------~I~~~~~~~~~~g~~~~-~~l~--g~Pdgl~~d~~~dG-~  257 (310)
                              +..|.+|+|++.|+ ||++.-...        -++.+...+++.++++. ...|  .--.|.++.+  || .
T Consensus       491 ~~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~Fsp--D~~T  567 (616)
T COG3211         491 SANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSP--DGKT  567 (616)
T ss_pred             ccCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCC--CCce
Confidence                    45599999999998 777654332        13333333444454443 1112  2346789999  88 6


Q ss_pred             EEEEEecCC
Q 048181          258 FWEAAIITR  266 (310)
Q Consensus       258 l~va~~~~~  266 (310)
                      ++|+..-.+
T Consensus       568 lFV~vQHPG  576 (616)
T COG3211         568 LFVNVQHPG  576 (616)
T ss_pred             EEEEecCCC
Confidence            899876553

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.57  E-value=0.76  Score=44.05  Aligned_cols=112  Identities=10%  Similarity=0.076  Sum_probs=59.1

Q ss_pred             EEecCCCe----EEEEeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181          100 ALHYATRQ----LYIADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus       100 a~d~~~g~----LyVad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      ++. ++|+    +|++...  ..|+.++.++++.+.+.. ..+..    -..+++|++..|.++-....           
T Consensus       191 ~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~----~~p~wSPDG~~Laf~s~~~g-----------  253 (428)
T PRK01029        191 TWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQ----LMPTFSPRKKLLAFISDRYG-----------  253 (428)
T ss_pred             eEc-cCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCc----cceEECCCCCEEEEEECCCC-----------
Confidence            565 4543    2455433  349999999887766543 33321    14678895336665532110           


Q ss_pred             ecCCCceEEEEcCCC---CeEEEeecC-CCCCceeEEccCCCEEEEEec--CCCeEEEEEecC
Q 048181          174 TNDSTGRLLSYNPRS---SQVTVLLRN-LTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRG  230 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~---g~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~  230 (310)
                        .++-.+..++..+   ++.+.+... .......+|+|||+.|+++..  ...+||++++++
T Consensus       254 --~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~  314 (428)
T PRK01029        254 --NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP  314 (428)
T ss_pred             --CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence              0111122133222   333333332 223356799999997776543  334788888753

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.53  E-value=0.6  Score=44.71  Aligned_cols=162  Identities=17%  Similarity=0.158  Sum_probs=84.7

Q ss_pred             EEecCCCeEEEEeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEE-cCCCccCccceeEeeeec
Q 048181          100 ALHYATRQLYIADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFT-DASGVYDFRTIVKLNITN  175 (310)
Q Consensus       100 a~d~~~g~LyVad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvt-d~~~~~~~~~~~~~~~~~  175 (310)
                      ++.+...+|.++....   .|+.+|..++....+ +...+.  +.  .=.++|++-.|+|+ |...              
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L-t~~~gi--~~--~Ps~spdG~~ivf~Sdr~G--------------  304 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL-TNGFGI--NT--SPSWSPDGSKIVFTSDRGG--------------  304 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEEEEcCCCCcceec-ccCCcc--cc--CccCCCCCCEEEEEeCCCC--------------
Confidence            3432233454443332   499999988765543 222221  10  22345543455554 4322              


Q ss_pred             CCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCe--EEEEEecCCCCCceee--ecCCCCCceeeeC
Q 048181          176 DSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNR--TLKYWLRGPRANSFDI--INFQAKPHNIKRN  251 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~--I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d  251 (310)
                        .-+||+++++++.++.+........--.++|||++|.+.....+.  |..+++...  +..+.  .....  ..-...
T Consensus       305 --~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~--~~~~~lt~~~~~--e~ps~~  378 (425)
T COG0823         305 --RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG--GKIRILTSTYLN--ESPSWA  378 (425)
T ss_pred             --CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC--CcEEEccccccC--CCCCcC
Confidence              237999999877776666555555577899999977776644444  555555321  11222  11110  111233


Q ss_pred             CCCCCcE--EEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCc
Q 048181          252 PGLLQTF--WEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQY  295 (310)
Q Consensus       252 ~~~dG~l--~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~  295 (310)
                      +  +|..  |.+....       ++.+.-++-+|+....+....++
T Consensus       379 ~--ng~~i~~~s~~~~-------~~~l~~~s~~g~~~~~~~~~~~~  415 (425)
T COG0823         379 P--NGRMIMFSSGQGG-------GSVLSLVSLDGRVSRPLPLADGD  415 (425)
T ss_pred             C--CCceEEEeccCCC-------CceEEEeeccceeEEEEeccCcc
Confidence            3  4433  2332222       23556667788888777776553

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=96.52  E-value=0.18  Score=52.89  Aligned_cols=189  Identities=14%  Similarity=0.208  Sum_probs=120.9

Q ss_pred             CcceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           35 GGESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        35 ~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ....+.++. ++.+||.|.....|.+....+......          |        ....-.|.|+++|--.+++|-+|.
T Consensus       438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~----------~--------~~g~~~~~~lavD~~~~~~y~tDe  499 (877)
T KOG1215|consen  438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECEL----------C--------GDGLCIPEGLAVDWIGDNIYWTDE  499 (877)
T ss_pred             cceEEEEEecCCEEEEEeccCCeEeeeccCCCccceE----------e--------ccCccccCcEEEEeccCCceeccc
Confidence            444455553 457899999999999887775432110          1        123346779999866789999998


Q ss_pred             CCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC-eE
Q 048181          114 YSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS-QV  191 (310)
Q Consensus       114 ~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g-~~  191 (310)
                      ... +.+.+.++....++...    .+..|..++++|..|.+|++|... .              . ++.|-..+.- ..
T Consensus       500 ~~~~i~v~~~~g~~~~vl~~~----~l~~~r~~~v~p~~g~~~wtd~~~-~--------------~-~i~ra~~dg~~~~  559 (877)
T KOG1215|consen  500 GNCLIEVADLDGSSRKVLVSK----DLDLPRSIAVDPEKGLMFWTDWGQ-P--------------P-RIERASLDGSERA  559 (877)
T ss_pred             CCceeEEEEccCCceeEEEec----CCCCccceeeccccCeeEEecCCC-C--------------c-hhhhhcCCCCCce
Confidence            754 44455454433333322    123567899999889999999864 1              1 2222222211 22


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEecCCC-eEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGN-RTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~-~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      ..+..++..|||++++--.+.+|.+|.... .|.+...+|... .... ..++ .|.++++-.   ..+|-.++..+
T Consensus       560 ~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r-~~~~~~~~~-~p~~~~~~~---~~iyw~d~~~~  631 (877)
T KOG1215|consen  560 VLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNR-RVVDSEDLP-HPFGLSVFE---DYIYWTDWSNR  631 (877)
T ss_pred             EEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCce-EEeccccCC-CceEEEEec---ceeEEeecccc
Confidence            233345789999999988888999999888 788998887432 1112 3444 588999876   46666666553

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.49  E-value=0.83  Score=44.56  Aligned_cols=129  Identities=10%  Similarity=0.155  Sum_probs=66.8

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEE
Q 048181           39 IAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLL  118 (310)
Q Consensus        39 ia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~  118 (310)
                      +++. +|.+ |+...+++++.++...+.+.+.....       ... .......  ...|+++. .++++|+.+....|+
T Consensus        57 Pvv~-~g~v-y~~~~~g~l~AlD~~tG~~~W~~~~~-------~~~-~~~~~~~--~~~g~~~~-~~~~V~v~~~~g~v~  123 (488)
T cd00216          57 PLVV-DGDM-YFTTSHSALFALDAATGKVLWRYDPK-------LPA-DRGCCDV--VNRGVAYW-DPRKVFFGTFDGRLV  123 (488)
T ss_pred             CEEE-CCEE-EEeCCCCcEEEEECCCChhhceeCCC-------CCc-ccccccc--ccCCcEEc-cCCeEEEecCCCeEE
Confidence            3443 5564 45555799999998755444432110       000 0000000  11245553 238999987766699


Q ss_pred             EEeCCCCeEEEeeccCCCc---cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          119 VVGPNGRLATQLATGAEGQ---AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       119 ~id~~~~~~~~~~~~~~g~---~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      .+|.++|+..--.. ....   ....-...++.  ++.+|+......+         ......|.|+.+|..+|+..
T Consensus       124 AlD~~TG~~~W~~~-~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         124 ALDAETGKQVWKFG-NNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             EEECCCCCEeeeec-CCCCcCcceEecCCCEEE--CCEEEEecccccc---------ccCCCCcEEEEEECCCCcee
Confidence            99999887542221 1111   01111234555  3788886543211         00123578889998888654

The alignment model contains an 8-bladed beta-propeller.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.038  Score=47.08  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=43.8

Q ss_pred             eeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeecc--------CCCccccCccceEEeCCCCeEEEEcCC
Q 048181           97 FGLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATG--------AEGQAFHFLDGLDVDQGTGVVYFTDAS  160 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~--------~~g~~~~~pndvavd~~~G~lyvtd~~  160 (310)
                      +-|.+  -+|.||.--.. ..|.+|++++|++..+...        .+....+-+||+|.+++.+++|+|...
T Consensus       179 NELE~--VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~  249 (262)
T COG3823         179 NELEW--VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL  249 (262)
T ss_pred             cceee--eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence            34555  37888854333 4699999999987655321        233456789999999987799999754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.45  E-value=1.2  Score=45.59  Aligned_cols=200  Identities=15%  Similarity=0.180  Sum_probs=108.3

Q ss_pred             eeecceEEEeCCCCCCCcceEEE--------ccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccC
Q 048181           19 FSIPTFTKILFPPKAFGGESIAF--------EPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDL   89 (310)
Q Consensus        19 ~~~~~~~~~~~~~~~~~Pegia~--------d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~   89 (310)
                      -+-+.++.++-.....-|+.+..        .-+.+.+.+...++.|.++.-+... ..+.                   
T Consensus        32 gsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL-------------------   92 (933)
T KOG1274|consen   32 GSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTIL-------------------   92 (933)
T ss_pred             cCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcccee-------------------
Confidence            34455565554433345555441        1234557777778888888754322 1111                   


Q ss_pred             CCCCCce-eeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccc
Q 048181           90 GPICRRT-FGLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRT  167 (310)
Q Consensus        90 ~~~~~~P-~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~  167 (310)
                       ..+.-| .-++++ .+|...++-.. ..|-.++..+..........++ +   .-.+..+|+ |++..+-+        
T Consensus        93 -~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-p---Vl~l~~~p~-~~fLAvss--------  157 (933)
T KOG1274|consen   93 -ARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-P---VLQLSYDPK-GNFLAVSS--------  157 (933)
T ss_pred             -eeeeccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCC-c---eeeeeEcCC-CCEEEEEe--------
Confidence             112223 367886 67777665333 3466666544332222333222 1   236889995 77765543        


Q ss_pred             eeEeeeecCCCceEEEEcCCCCeEEEeecCCCC---------CceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee
Q 048181          168 IVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG---------PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI  238 (310)
Q Consensus       168 ~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~---------pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~  238 (310)
                               .+|.|+.||.+++.+...+.++..         =+=++|+|+|.++.+. ...+.|..|+..+-. -...+
T Consensus       158 ---------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we-~~f~L  226 (933)
T KOG1274|consen  158 ---------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWE-LQFKL  226 (933)
T ss_pred             ---------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCce-eheee
Confidence                     258888888877766554443321         1457899997766554 457788888876421 11112


Q ss_pred             -ecC-CCCCceeeeCCCCCCcEEEEEecC
Q 048181          239 -INF-QAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       239 -~~l-~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                       ... ...-.-+.+++  .|.+..|..-.
T Consensus       227 r~~~~ss~~~~~~wsP--nG~YiAAs~~~  253 (933)
T KOG1274|consen  227 RDKLSSSKFSDLQWSP--NGKYIAASTLD  253 (933)
T ss_pred             cccccccceEEEEEcC--CCcEEeeeccC
Confidence             121 11134477788  77666554443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.40  E-value=0.68  Score=47.21  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=87.7

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      .|-..|+||++|..+++...++.|.+++.....+.-                 +........-.+++.+  .+.+..+..
T Consensus        14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-----------------~ti~~~g~~v~~ia~~--s~~f~~~s~   74 (933)
T KOG1274|consen   14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-----------------ETIDISGELVSSIACY--SNHFLTGSE   74 (933)
T ss_pred             CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-----------------chhhccCceeEEEeec--ccceEEeec
Confidence            456789999999988888888888888654221100                 0000011123466663  445544544


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      .+-|.++....++...+...+.    ...++++++. +|...+.-+..                 -.|-.++.++...+.
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g-~g~~iaagsdD-----------------~~vK~~~~~D~s~~~  132 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARFT----LPIRDLAVSG-SGKMIAAGSDD-----------------TAVKLLNLDDSSQEK  132 (933)
T ss_pred             cceEEEeeCCCCCccceeeeee----ccceEEEEec-CCcEEEeecCc-----------------eeEEEEeccccchhe
Confidence            4446666655544433332221    1136889998 47665544332                 123333333333333


Q ss_pred             eecCCCCC-ceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          194 LLRNLTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       194 ~~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      ...+...| -+|.++|.++ ++++.+.++.|+.+++..
T Consensus       133 ~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             eecccCCceeeeeEcCCCC-EEEEEecCceEEEEEccc
Confidence            44455555 4899999998 555666788999998864

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.30  E-value=0.066  Score=51.82  Aligned_cols=135  Identities=13%  Similarity=0.113  Sum_probs=77.6

Q ss_pred             eeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181           97 FGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      ..|.+| ..|+|||+ +..|+++||..++++-.+......   ...|.+..|- .|++||....                
T Consensus       168 ~aLv~D-~~g~lWvg-T~dGL~~fd~~~gkalql~s~~~d---k~I~al~~d~-qg~LWVGTdq----------------  225 (671)
T COG3292         168 VALVFD-ANGRLWVG-TPDGLSYFDAGRGKALQLASPPLD---KAINALIADV-QGRLWVGTDQ----------------  225 (671)
T ss_pred             eeeeee-ccCcEEEe-cCCcceEEccccceEEEcCCCcch---hhHHHHHHHh-cCcEEEEecc----------------
Confidence            357787 78999987 455899999988876554332111   4467888888 5999997543                


Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCc----eeEEccCCCEEEEEecCCCeEEEEEecCCCCCce--eeecCC--CCCcee
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPA----GVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF--DIINFQ--AKPHNI  248 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pn----GIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~~~~l~--g~Pdgl  248 (310)
                        | ++++++.+.+..-.  +...|.    -+.-|.+|. +|+.-. ++ ++|+...-  .+..  .....+  .....+
T Consensus       226 --G-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~-lWiGTe-nG-l~r~~l~r--q~Lq~~~~~~~l~~S~vnsL  295 (671)
T COG3292         226 --G-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE-LWIGTE-NG-LWRTRLPR--QGLQIPLSKMHLGVSTVNSL  295 (671)
T ss_pred             --c-eEEEchhhcccccc--CCCCcchheeeeecccCCC-EEEeec-cc-ceeEecCC--CCccccccccCCccccccce
Confidence              2 66666553222221  222333    233345564 666532 22 33343321  1111  111111  124678


Q ss_pred             eeCCCCCCcEEEEEecC
Q 048181          249 KRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       249 ~~d~~~dG~l~va~~~~  265 (310)
                      ..|.  +|+||+.....
T Consensus       296 ~~D~--dGsLWv~t~~g  310 (671)
T COG3292         296 WLDT--DGSLWVGTYGG  310 (671)
T ss_pred             eecc--CCCEeeeccCc
Confidence            9999  99999998874

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.29  E-value=0.52  Score=44.85  Aligned_cols=110  Identities=9%  Similarity=0.061  Sum_probs=66.1

Q ss_pred             CCCCCCceeeEEEecCCCe-EEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccc
Q 048181           89 LGPICRRTFGLALHYATRQ-LYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRT  167 (310)
Q Consensus        89 ~~~~~~~P~Gla~d~~~g~-LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~  167 (310)
                      .+...++--.+.++ ++|+ +.+++....||.+|.++|..+.+-.+..+    -..|.++++ +++.+.=-    |.. .
T Consensus       397 ~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~idkS~~~----lItdf~~~~-nsr~iAYa----fP~-g  465 (668)
T COG4946         397 IEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG----LITDFDWHP-NSRWIAYA----FPE-G  465 (668)
T ss_pred             eeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeEecccccc----eeEEEEEcC-CceeEEEe----cCc-c
Confidence            34455666678887 5665 66676666799999999887765433222    245888888 36543211    110 0


Q ss_pred             eeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEe
Q 048181          168 IVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSE  217 (310)
Q Consensus       168 ~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d  217 (310)
                      +.        ...+-.+|..++++-.+.....+--.-||+|||++||+-.
T Consensus       466 y~--------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         466 YY--------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ee--------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            11        1234555665555544444434445678999999999854

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.22  E-value=0.85  Score=40.84  Aligned_cols=232  Identities=10%  Similarity=0.043  Sum_probs=127.4

Q ss_pred             EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEee-----------eecCCCCccccCCCcc----ccCC-
Q 048181           27 ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFA-----------FTTPTRSKAVCDGTTN----LDLG-   90 (310)
Q Consensus        27 ~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~-----------~~~~~~~~~~~~g~~~----~~~~-   90 (310)
                      ..|.|.+..-..+-|.+|.+.+++...+|++..++.-...++.+           .-+|......|+|-..    ..+. 
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            34577788889999999999899999999999888653322211           1233344455654210    0000 


Q ss_pred             -------C-------CCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEE
Q 048181           91 -------P-------ICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYF  156 (310)
Q Consensus        91 -------~-------~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyv  156 (310)
                             +       ..++-.-..+ .+++.|+-+.........|.++++.....   .|. ..-.-.+.+.|.+++.|+
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f-~dD~~ilT~SGD~TCalWDie~g~~~~~f---~GH-~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRF-LDDNHILTGSGDMTCALWDIETGQQTQVF---HGH-TGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEE-cCCCceEecCCCceEEEEEcccceEEEEe---cCC-cccEEEEecCCCCCCeEE
Confidence                   0       0001111122 13343432222223455566665543322   221 112235667774588898


Q ss_pred             EcCCCccCccceeEeeeecCCCceEEEEcCCCCe-EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCc
Q 048181          157 TDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANS  235 (310)
Q Consensus       157 td~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~  235 (310)
                      +-...                 ..-+.+|...+. ++.+...-.--|.+.|.|+|. -|++-+.....+-||+...  .+
T Consensus       204 Sg~cD-----------------~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD--~~  263 (343)
T KOG0286|consen  204 SGGCD-----------------KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRAD--QE  263 (343)
T ss_pred             ecccc-----------------cceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCC--cE
Confidence            86542                 223333433333 233333334459999999996 6888888888888988643  12


Q ss_pred             eee---ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCC
Q 048181          236 FDI---INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEA  293 (310)
Q Consensus       236 ~~~---~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~  293 (310)
                      ..+   ......-..+++..  .|+|..+.+...        .+..+| -.|+.+..+.-.+
T Consensus       264 ~a~ys~~~~~~gitSv~FS~--SGRlLfagy~d~--------~c~vWDtlk~e~vg~L~GHe  315 (343)
T KOG0286|consen  264 LAVYSHDSIICGITSVAFSK--SGRLLFAGYDDF--------TCNVWDTLKGERVGVLAGHE  315 (343)
T ss_pred             EeeeccCcccCCceeEEEcc--cccEEEeeecCC--------ceeEeeccccceEEEeeccC
Confidence            222   23333467799999  999888766542        233444 2455555555444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.20  E-value=0.41  Score=48.26  Aligned_cols=187  Identities=13%  Similarity=0.155  Sum_probs=105.2

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ....++++.=||..+.+..+|.|-+++...+...-.+           |.    .....+.-.|+++| ..+++.|+...
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf-----------~~----~~ah~~~V~gla~D-~~n~~~vsa~~  513 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF-----------GD----SPAHKGEVTGLAVD-GTNRLLVSAGA  513 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc-----------cc----CccccCceeEEEec-CCCceEEEccC
Confidence            3456777777998999999999999998876543111           00    01122344699998 78889888777


Q ss_pred             CcEEEE-eCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE-
Q 048181          115 SGLLVV-GPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT-  192 (310)
Q Consensus       115 ~gi~~i-d~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~-  192 (310)
                      .|++++ |.+...   +.....-  -..++.+.-... -.++..-                 -.+=.|..+|..+.++. 
T Consensus       514 ~Gilkfw~f~~k~---l~~~l~l--~~~~~~iv~hr~-s~l~a~~-----------------~ddf~I~vvD~~t~kvvR  570 (910)
T KOG1539|consen  514 DGILKFWDFKKKV---LKKSLRL--GSSITGIVYHRV-SDLLAIA-----------------LDDFSIRVVDVVTRKVVR  570 (910)
T ss_pred             cceEEEEecCCcc---eeeeecc--CCCcceeeeeeh-hhhhhhh-----------------cCceeEEEEEchhhhhhH
Confidence            787665 544322   1111110  001222222221 1111110                 01224666776544332 


Q ss_pred             EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      .+...-..-|.++|||||++| ++.+..+.|+.+|+-..  .......+..-+-.+.+.+  +|.+..+.+-.
T Consensus       571 ~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlpt~--~lID~~~vd~~~~sls~SP--ngD~LAT~Hvd  638 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLPTG--TLIDGLLVDSPCTSLSFSP--NGDFLATVHVD  638 (910)
T ss_pred             HhhccccceeeeEeCCCCcEE-EEeecCCcEEEEeccCc--ceeeeEecCCcceeeEECC--CCCEEEEEEec
Confidence            223334466999999999965 45556778888887421  2222122333466788888  88777665544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=96.16  E-value=0.59  Score=41.18  Aligned_cols=188  Identities=10%  Similarity=0.034  Sum_probs=103.7

Q ss_pred             EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181           27 ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR  106 (310)
Q Consensus        27 ~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g  106 (310)
                      -++.+....-.+++|..+|.-+.....++.+..++.+.....+.        ....|        ....---++++++..
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~--------~~~~g--------h~~svdql~w~~~~~   77 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE--------LVYRG--------HTDSVDQLCWDPKHP   77 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh--------hcccC--------CCcchhhheeCCCCC
Confidence            34455666788999999998777777777776666553211100        00000        011112366776655


Q ss_pred             eEEEE-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181          107 QLYIA-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       107 ~LyVa-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                      .++++ .++..|..+|...++....... .++.    +-++..|+++.+.+.+.                  +-.|.-+|
T Consensus        78 d~~atas~dk~ir~wd~r~~k~~~~i~~-~~en----i~i~wsp~g~~~~~~~k------------------dD~it~id  134 (313)
T KOG1407|consen   78 DLFATASGDKTIRIWDIRSGKCTARIET-KGEN----INITWSPDGEYIAVGNK------------------DDRITFID  134 (313)
T ss_pred             cceEEecCCceEEEEEeccCcEEEEeec-cCcc----eEEEEcCCCCEEEEecC------------------cccEEEEE
Confidence            56554 4445577788765543321111 1111    24556664444444432                  23566677


Q ss_pred             CCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCC---ceeeeCCCCCCcEEEE
Q 048181          186 PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKP---HNIKRNPGLLQTFWEA  261 (310)
Q Consensus       186 ~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~P---dgl~~d~~~dG~l~va  261 (310)
                      ..+.++..-.+-....|-|+++-+++ ||+..++.++|-.+.+-     .++. ..+...|   -.|.+|+  +|..+..
T Consensus       135 ~r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snCicI~f~p--~GryfA~  206 (313)
T KOG1407|consen  135 ARTYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNCICIEFDP--DGRYFAT  206 (313)
T ss_pred             ecccceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEecc-----ccccccccccCCcceEEEEECC--CCceEee
Confidence            65444433333345679999997765 88888888987766543     1221 2333233   3477888  8876654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.14  E-value=0.42  Score=45.79  Aligned_cols=209  Identities=12%  Similarity=0.111  Sum_probs=113.0

Q ss_pred             ecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181           21 IPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA  100 (310)
Q Consensus        21 ~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla  100 (310)
                      +|-..++.+++.-.-...+++|+.|..++++..+-.|.-++-.|--..+..   ......|+          +..-+.+.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~---fr~l~P~E----------~h~i~sl~  221 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS---FRQLQPCE----------THQINSLQ  221 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh---hhccCccc----------ccccceee
Confidence            455566777776667778999999998999998888988887652111100   00011222          22345788


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccC-------CC-ccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181          101 LHYATRQLYIADAYSGLLVVGPNGRLATQLATGA-------EG-QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus       101 ~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~-------~g-~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      +....+.|+|.........+|.++-++..+...-       .. .+....+.....|.+-..|.|               
T Consensus       222 ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT---------------  286 (641)
T KOG0772|consen  222 YSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLT---------------  286 (641)
T ss_pred             ecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEE---------------
Confidence            8644555666655566788898875544332210       00 011122233333332223333               


Q ss_pred             eecCCCce--EEEEcCCCCeEEEeec----CC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC-ceee--ecCC
Q 048181          173 ITNDSTGR--LLSYNPRSSQVTVLLR----NL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN-SFDI--INFQ  242 (310)
Q Consensus       173 ~~~~~~G~--l~~~d~~~g~~~~~~~----~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g-~~~~--~~l~  242 (310)
                        ...+|.  +|-++....+.+++..    +. ..|.--+|++||+ ++.+-...+.|..++..+.... ...+  +..+
T Consensus       287 --~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~  363 (641)
T KOG0772|consen  287 --CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP  363 (641)
T ss_pred             --ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCC
Confidence              233444  4444332223333322    11 2467889999998 5777777787776665221111 1112  4444


Q ss_pred             C-CCceeeeCCCCCCcEEEEE
Q 048181          243 A-KPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       243 g-~Pdgl~~d~~~dG~l~va~  262 (310)
                      + .-..|.+..  ||++..+-
T Consensus       364 g~~Itsi~FS~--dg~~LlSR  382 (641)
T KOG0772|consen  364 GQDITSISFSY--DGNYLLSR  382 (641)
T ss_pred             CCceeEEEecc--ccchhhhc
Confidence            2 345688888  88877764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=96.13  E-value=0.85  Score=40.01  Aligned_cols=142  Identities=14%  Similarity=0.106  Sum_probs=82.9

Q ss_pred             CEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181           46 GAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN  123 (310)
Q Consensus        46 ~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~  123 (310)
                      -++.+...+..|+-+....+.  .++                    ....++-+.|.+. ++++.+++.....|..+|..
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTi--------------------qh~dsqVNrLeiT-pdk~~LAaa~~qhvRlyD~~   69 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTI--------------------QHPDSQVNRLEIT-PDKKDLAAAGNQHVRLYDLN   69 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEE--------------------ecCccceeeEEEc-CCcchhhhccCCeeEEEEcc
Confidence            345556678888877766443  222                    1334566778885 66766665555558888887


Q ss_pred             CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCce
Q 048181          124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG  203 (310)
Q Consensus       124 ~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnG  203 (310)
                      ++.-.++++ +++. -+....+.+.. +|+-..|.+                 .+|.+-.+|..+-......+.-.--|.
T Consensus        70 S~np~Pv~t-~e~h-~kNVtaVgF~~-dgrWMyTgs-----------------eDgt~kIWdlR~~~~qR~~~~~spVn~  129 (311)
T KOG0315|consen   70 SNNPNPVAT-FEGH-TKNVTAVGFQC-DGRWMYTGS-----------------EDGTVKIWDLRSLSCQRNYQHNSPVNT  129 (311)
T ss_pred             CCCCCceeE-Eecc-CCceEEEEEee-cCeEEEecC-----------------CCceEEEEeccCcccchhccCCCCcce
Confidence            765434332 3331 12223455555 366555543                 246666666554332222222233499


Q ss_pred             eEEccCCCEEEEEecCCCeEEEEEec
Q 048181          204 VAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       204 Ia~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      |+++|....|+++|. ++.|+..|+.
T Consensus       130 vvlhpnQteLis~dq-sg~irvWDl~  154 (311)
T KOG0315|consen  130 VVLHPNQTELISGDQ-SGNIRVWDLG  154 (311)
T ss_pred             EEecCCcceEEeecC-CCcEEEEEcc
Confidence            999999888887774 5667877774

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.09  E-value=1.2  Score=44.03  Aligned_cols=160  Identities=13%  Similarity=0.153  Sum_probs=85.5

Q ss_pred             ceEEEccCCCEEEEEe-CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe-CC
Q 048181           37 ESIAFEPVGGAFYTGV-ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD-AY  114 (310)
Q Consensus        37 egia~d~~G~l~~~d~-~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad-~~  114 (310)
                      ..-++.|+|+++-.+. ..=+|+|+.++..++.....-.             ........-.-..+|  +..++++. ..
T Consensus       386 s~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~-------------~~~~~~a~~i~ftid--~~k~~~~s~~~  450 (691)
T KOG2048|consen  386 SCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDV-------------PLALLDASAISFTID--KNKLFLVSKNI  450 (691)
T ss_pred             eeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccc-------------hhhhccceeeEEEec--CceEEEEeccc
Confidence            3456678999766654 5678999999864433221000             000001111233444  34444443 22


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEE-EEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVY-FTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~ly-vtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ..+..++.++.....+............+-++++++ |+-+ +.+                  ..|.++.|+.++++.+.
T Consensus       451 ~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd-G~yiaa~~------------------t~g~I~v~nl~~~~~~~  511 (691)
T KOG2048|consen  451 FSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD-GNYIAAIS------------------TRGQIFVYNLETLESHL  511 (691)
T ss_pred             ceeEEEEecCcchhhhhccccccCCCcceeEEEcCC-CCEEEEEe------------------ccceEEEEEcccceeec
Confidence            346666665543322222111112344567889985 5533 333                  23779999988887776


Q ss_pred             eecCCCCC-ceeEEcc-CCCEEEEEecCCCeEEEEEecCC
Q 048181          194 LLRNLTGP-AGVAISV-DSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       194 ~~~~l~~p-nGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      +...+..+ .-++++| +.+.|. ..+.+++|+-|++...
T Consensus       512 l~~rln~~vTa~~~~~~~~~~lv-vats~nQv~efdi~~~  550 (691)
T KOG2048|consen  512 LKVRLNIDVTAAAFSPFVRNRLV-VATSNNQVFEFDIEAR  550 (691)
T ss_pred             chhccCcceeeeeccccccCcEE-EEecCCeEEEEecchh
Confidence            66444432 3455553 344454 4567889999998543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.04  E-value=0.98  Score=39.96  Aligned_cols=108  Identities=18%  Similarity=0.247  Sum_probs=61.1

Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181          101 LHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       101 ~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      .|...|-+|+..+....+.+|+.+.. .+......|.-|..|   ++++-++.||++-..                  |+
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP---~i~~g~~sly~a~t~------------------G~  158 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSP---VIAPGDGSLYAAITA------------------GA  158 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccc---eecCCCceEEEEecc------------------ce
Confidence            34456777877666668889887632 233233444444444   566645999998764                  67


Q ss_pred             EEEEcCCCCeEEEeec----------CCCCCceeEE-ccCCCEEEEEecCCCeEEEEEecCC
Q 048181          181 LLSYNPRSSQVTVLLR----------NLTGPAGVAI-SVDSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       181 l~~~d~~~g~~~~~~~----------~l~~pnGIa~-~~dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      +.+..++++..+.++.          .+.....+.. .-||..+-++++ ...|||+...|+
T Consensus       159 vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~s-G~qvwr~~t~Gp  219 (354)
T KOG4649|consen  159 VLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDES-GRQVWRPATKGP  219 (354)
T ss_pred             EEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCC-CcEEEeecCCCc
Confidence            7777776554433321          1111122222 246764444543 477888876554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.03  E-value=0.33  Score=46.47  Aligned_cols=212  Identities=12%  Similarity=0.134  Sum_probs=117.9

Q ss_pred             eecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCC-ccccCCCCCCcee
Q 048181           20 SIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGT-TNLDLGPICRRTF   97 (310)
Q Consensus        20 ~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~P~   97 (310)
                      +-+++++|. |..-..-.++.|.+.|+.+++-..+.++.-++.+|.. ..+           |.|. +..++..+-++-.
T Consensus       202 s~~~fr~l~-P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~-----------~KGDQYI~Dm~nTKGHia  269 (641)
T KOG0772|consen  202 SMRSFRQLQ-PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEF-----------SKGDQYIRDMYNTKGHIA  269 (641)
T ss_pred             cchhhhccC-cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeee-----------eccchhhhhhhccCCcee
Confidence            334455553 3233456688898888877777777788888888743 222           3333 3444545555554


Q ss_pred             eE---EEecCCCeEEEEeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181           98 GL---ALHYATRQLYIADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus        98 Gl---a~d~~~g~LyVad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~  171 (310)
                      .|   ++++.+...|++....   +||-++..-.+.+++-....+..-..|.-.+.++ +|.++.+-.            
T Consensus       270 ~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc------------  336 (641)
T KOG0772|consen  270 ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGC------------  336 (641)
T ss_pred             eeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-Ccchhhhcc------------
Confidence            44   4565566666654433   4666654333444443333332223355667787 477754432            


Q ss_pred             eeecCCCceEEEEcCCCCeEE--Eeec----CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCC-
Q 048181          172 NITNDSTGRLLSYNPRSSQVT--VLLR----NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQA-  243 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g~~~--~~~~----~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g-  243 (310)
                           .+|+|-.++..+..+.  ....    .-..-..|+||.||+ .+.+-...+.+..+++...+.- +.+ .+|+. 
T Consensus       337 -----~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~t~  409 (641)
T KOG0772|consen  337 -----LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKP-LNVRTGLPTP  409 (641)
T ss_pred             -----cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccccc-hhhhcCCCcc
Confidence                 2455655553221111  1111    112347899999998 4567777777777777643211 222 55542 


Q ss_pred             CC-ceeeeCCCCCCcEEEEEecC
Q 048181          244 KP-HNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       244 ~P-dgl~~d~~~dG~l~va~~~~  265 (310)
                      +| .+.++.+  +-.|.++....
T Consensus       410 ~~~tdc~FSP--d~kli~TGtS~  430 (641)
T KOG0772|consen  410 FPGTDCCFSP--DDKLILTGTSA  430 (641)
T ss_pred             CCCCccccCC--CceEEEecccc
Confidence            33 4577888  88888776554

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.97  E-value=0.03  Score=35.05  Aligned_cols=41  Identities=32%  Similarity=0.419  Sum_probs=28.9

Q ss_pred             CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe-EEEeecCCCCCceeEEcc
Q 048181          152 GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-VTVLLRNLTGPAGVAISV  208 (310)
Q Consensus       152 G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-~~~~~~~l~~pnGIa~~~  208 (310)
                      ++||+||....                .++.+.+.+... ..++.+.+..|+|||+++
T Consensus         1 ~~iYWtD~~~~----------------~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQD----------------PSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTT----------------EEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCC----------------cEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            57999998641                256666665443 344567899999999975

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.86  E-value=0.3  Score=47.53  Aligned_cols=145  Identities=17%  Similarity=0.300  Sum_probs=81.9

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      -.-+.+|.+|+ ||++..+| ++++++..+ ....+  ++                +....-+-+..| ..|+|||.. .
T Consensus       167 V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~----------------~~dk~I~al~~d-~qg~LWVGT-d  224 (671)
T COG3292         167 VVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SP----------------PLDKAINALIAD-VQGRLWVGT-D  224 (671)
T ss_pred             ceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CC----------------cchhhHHHHHHH-hcCcEEEEe-c
Confidence            34577888877 77776544 888887633 22211  00                011122346666 789999974 4


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE-
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV-  193 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~-  193 (310)
                      .|++..++++.+..-....   -+....+-+.-|. .|.+||.....                   ++|+......+.. 
T Consensus       225 qGv~~~e~~G~~~sn~~~~---lp~~~I~ll~qD~-qG~lWiGTenG-------------------l~r~~l~rq~Lq~~  281 (671)
T COG3292         225 QGVYLQEAEGWRASNWGPM---LPSGNILLLVQDA-QGELWIGTENG-------------------LWRTRLPRQGLQIP  281 (671)
T ss_pred             cceEEEchhhccccccCCC---Ccchheeeeeccc-CCCEEEeeccc-------------------ceeEecCCCCcccc
Confidence            5799999887443322211   1222344566677 49999976432                   2322221122211 


Q ss_pred             ---eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181          194 ---LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL  228 (310)
Q Consensus       194 ---~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~  228 (310)
                         ...+...-|++..|.||+ ||+...  ++|++|..
T Consensus       282 ~~~~~l~~S~vnsL~~D~dGs-LWv~t~--~giv~~~~  316 (671)
T COG3292         282 LSKMHLGVSTVNSLWLDTDGS-LWVGTY--GGIVRYLT  316 (671)
T ss_pred             ccccCCccccccceeeccCCC-Eeeecc--CceEEEec
Confidence               122344558999999997 898754  55677754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.77  E-value=1.3  Score=41.24  Aligned_cols=146  Identities=8%  Similarity=0.062  Sum_probs=81.1

Q ss_pred             eEEEecCCCe-EEEEe--CCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEe-CC-CCeEEEEcCCCccCcccee
Q 048181           98 GLALHYATRQ-LYIAD--AYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVD-QG-TGVVYFTDASGVYDFRTIV  169 (310)
Q Consensus        98 Gla~d~~~g~-LyVad--~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd-~~-~G~lyvtd~~~~~~~~~~~  169 (310)
                      .+.+. .+++ +++.-  ...   .+..+|..++..+.+.......=+.......+. ++ ++.+|+++..         
T Consensus       188 ~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~---------  257 (353)
T PF00930_consen  188 RVGWS-PDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD---------  257 (353)
T ss_dssp             EEEEE-ETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT---------
T ss_pred             cceec-CCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC---------
Confidence            45554 4555 77653  222   277788877766555433222122222344432 32 2344444421         


Q ss_pred             EeeeecCCCceEEEEcCCCCeEEEeecCCCCC-ceeEEccCCCEEEEEecC----CCeEEEEEec-CCCCCceeeecCCC
Q 048181          170 KLNITNDSTGRLLSYNPRSSQVTVLLRNLTGP-AGVAISVDSSFLLVSEFT----GNRTLKYWLR-GPRANSFDIINFQA  243 (310)
Q Consensus       170 ~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv~d~~----~~~I~~~~~~-~~~~g~~~~~~l~g  243 (310)
                             +-..|+.++.+++..+.+..+--.- .=+.++++++.||++-+.    ...|++++++ +   +..+......
T Consensus       258 -------G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~  327 (353)
T PF00930_consen  258 -------GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCED  327 (353)
T ss_dssp             -------SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTS
T ss_pred             -------CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCC
Confidence                   2357999998877766555432222 347789999999998775    4579999887 3   3343311112


Q ss_pred             CCc-eeeeCCCCCCcEEEEEecC
Q 048181          244 KPH-NIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       244 ~Pd-gl~~d~~~dG~l~va~~~~  265 (310)
                      ... ...+++  +|+.++-.+.+
T Consensus       328 ~~~~~~~~Sp--dg~y~v~~~s~  348 (353)
T PF00930_consen  328 GDHYSASFSP--DGKYYVDTYSG  348 (353)
T ss_dssp             STTEEEEE-T--TSSEEEEEEES
T ss_pred             CCceEEEECC--CCCEEEEEEcC
Confidence            234 788999  99887765543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.69  E-value=0.79  Score=41.08  Aligned_cols=153  Identities=18%  Similarity=0.193  Sum_probs=76.1

Q ss_pred             ceeeEEEecCCCe-EEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           95 RTFGLALHYATRQ-LYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        95 ~P~Gla~d~~~g~-LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      +-+||++++...+ +.++-.. .--+.+|+++.+.-++.....+.+|.  -.-.+++++..||-|+...           
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy--GHGvfs~dG~~LYATEndf-----------  135 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY--GHGVFSPDGRLLYATENDF-----------  135 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceee--cccccCCCCcEEEeecCCC-----------
Confidence            4456666643333 3333222 12567787765443333333444332  2345777544567776432           


Q ss_pred             eecCCCceEEEEcCCCCeEEEee---cCCCCCceeEEccCCCEEEEEecC--CC-eEEE--EEecCC---------CCCc
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLL---RNLTGPAGVAISVDSSFLLVSEFT--GN-RTLK--YWLRGP---------RANS  235 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~---~~l~~pnGIa~~~dg~~Lyv~d~~--~~-~I~~--~~~~~~---------~~g~  235 (310)
                        ....|-|-.||.. ...+.+.   .---.|--+.+.+||++|.++.-.  ++ ..-|  ++++.=         ..|.
T Consensus       136 --d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~  212 (366)
T COG3490         136 --DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN  212 (366)
T ss_pred             --CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc
Confidence              1123555556654 2222222   122368899999999988776431  11 1111  111100         0011


Q ss_pred             e-eeecCC-----CCCceeeeCCCCCCcEEEEEecC
Q 048181          236 F-DIINFQ-----AKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       236 ~-~~~~l~-----g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      + +...+|     -.-..++++.  ||.+|.+|.-.
T Consensus       213 liekh~Lp~~l~~lSiRHld~g~--dgtvwfgcQy~  246 (366)
T COG3490         213 LIEKHTLPASLRQLSIRHLDIGR--DGTVWFGCQYR  246 (366)
T ss_pred             hhhhccCchhhhhcceeeeeeCC--CCcEEEEEEee
Confidence            0 001222     1347799999  99999999764

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=95.69  E-value=0.36  Score=50.63  Aligned_cols=158  Identities=15%  Similarity=0.153  Sum_probs=104.7

Q ss_pred             CCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           30 PPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        30 ~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      ..+...|+++++|-- +++||+|-.+..|...+.++....+..                  ......|..+++++..|.+
T Consensus       476 ~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~------------------~~~l~~~r~~~v~p~~g~~  537 (877)
T KOG1215|consen  476 GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLV------------------SKDLDLPRSIAVDPEKGLM  537 (877)
T ss_pred             ccCccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEE------------------ecCCCCccceeeccccCee
Confidence            335678999999964 689999999999888886654322211                  0122578899999888999


Q ss_pred             EEEeCCC--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          109 YIADAYS--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       109 yVad~~~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      |.+|...  .|.+-.+++...+.+...    .+..||++++|-.+.++|..|....+                .+...+-
T Consensus       538 ~wtd~~~~~~i~ra~~dg~~~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~~~~----------------~i~~~~~  597 (877)
T KOG1215|consen  538 FWTDWGQPPRIERASLDGSERAVLVTN----GILWPNGLTIDYETDRLYWADAKLDY----------------TIESANM  597 (877)
T ss_pred             EEecCCCCchhhhhcCCCCCceEEEeC----CccCCCcceEEeecceeEEEcccCCc----------------ceeeeec
Confidence            9998764  355555555444443322    25789999999988999999975421                1223332


Q ss_pred             CCCeE-EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          187 RSSQV-TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       187 ~~g~~-~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                      +.... ......+..|.+++...+  ++|.++.....+.+..
T Consensus       598 ~g~~r~~~~~~~~~~p~~~~~~~~--~iyw~d~~~~~~~~~~  637 (877)
T KOG1215|consen  598 DGQNRRVVDSEDLPHPFGLSVFED--YIYWTDWSNRAISRAE  637 (877)
T ss_pred             CCCceEEeccccCCCceEEEEecc--eeEEeeccccceEeee
Confidence            21211 133456778999998865  5888888776555443

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=95.58  E-value=0.032  Score=34.38  Aligned_cols=34  Identities=12%  Similarity=0.005  Sum_probs=29.2

Q ss_pred             CCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCc
Q 048181           32 KAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDG   65 (310)
Q Consensus        32 ~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~   65 (310)
                      ++..|.++++|+. +.+||+|...+.|.+.+.+|.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            5778999999987 569999999999999987753

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.52  E-value=3  Score=41.72  Aligned_cols=164  Identities=13%  Similarity=0.099  Sum_probs=90.6

Q ss_pred             cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181          116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL  195 (310)
Q Consensus       116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~  195 (310)
                      .|+.++..+ ..+.+..   +..+.   .-..+++++.||+......      ...+......+.++.++.+.++...  
T Consensus       380 ~Lwv~~~gg-~~~~lt~---g~~~t---~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--  444 (591)
T PRK13616        380 SLWVGPLGG-VAVQVLE---GHSLT---RPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--  444 (591)
T ss_pred             EEEEEeCCC-cceeeec---CCCCC---CceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--
Confidence            477777643 3344322   22222   3478885467887743211      0001112345788877766665543  


Q ss_pred             cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-------ecCCCCCceeeeCCCCCCcEEEEEecCCCC
Q 048181          196 RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-------INFQAKPHNIKRNPGLLQTFWEAAIITRQP  268 (310)
Q Consensus       196 ~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-------~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~  268 (310)
                      .--.....+.|||||+.|.+.-  .++|+.--+.-...|..++       ..+...+..+..-.  ++.|.|+.....  
T Consensus       445 ~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~--~~~L~V~~~~~~--  518 (591)
T PRK13616        445 RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT--GDSLVVGRSDPE--  518 (591)
T ss_pred             ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec--CCEEEEEecCCC--
Confidence            1112478999999999887765  3677763222112243332       22333356788888  899988865443  


Q ss_pred             CCCCceeeEEECCCCcEEEEEecCCCccccceeEEEecC
Q 048181          269 AGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFG  307 (310)
Q Consensus       269 ~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~~  307 (310)
                           ..+.+++-||.....  .|.+.....+++|+...
T Consensus       519 -----~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~  550 (591)
T PRK13616        519 -----HPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASP  550 (591)
T ss_pred             -----CceEEEecCCccccc--cCCCCccCceEEEecCC
Confidence                 247778888876443  24443345666665543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.51  E-value=0.25  Score=46.27  Aligned_cols=173  Identities=13%  Similarity=0.095  Sum_probs=80.8

Q ss_pred             cceEEEccCCC-EEEEEe--CCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           36 GESIAFEPVGG-AFYTGV--ADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        36 Pegia~d~~G~-l~~~d~--~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ...-+|.++|+ |+|++.  .+..++.++.+++. +.+.           +|.       ... ..|..+.+++..+|..
T Consensus        38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-----------dg~-------g~~-~~g~~~s~~~~~~~Yv   98 (386)
T PF14583_consen   38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-----------DGP-------GDN-TFGGFLSPDDRALYYV   98 (386)
T ss_dssp             TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE--------------SS--------B--TTT-EE-TTSSEEEEE
T ss_pred             ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-----------cCC-------CCC-ccceEEecCCCeEEEE
Confidence            33456778884 556554  35678899988653 3221           111       111 1244454566676555


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceE-EeCCCCeEEEEcCCCccCc---c--ceeEeeeecCCCceEEEEc
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLD-VDQGTGVVYFTDASGVYDF---R--TIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndva-vd~~~G~lyvtd~~~~~~~---~--~~~~~~~~~~~~G~l~~~d  185 (310)
                      .....|+++|+++.+.+.+....++  +. ..+-. ++. +++.++......-..   .  ....+.++..+..+|+++|
T Consensus        99 ~~~~~l~~vdL~T~e~~~vy~~p~~--~~-g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen   99 KNGRSLRRVDLDTLEERVVYEVPDD--WK-GYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             ETTTEEEEEETTT--EEEEEE--TT--EE-EEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             ECCCeEEEEECCcCcEEEEEECCcc--cc-cccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            4555799999999877665443322  11 11222 344 466665432110000   0  0111234456778999999


Q ss_pred             CCCCeEEEeecCCCCCceeEEccCC-CEEEEEecC-----CCeEEEEEecCC
Q 048181          186 PRSSQVTVLLRNLTGPAGVAISVDS-SFLLVSEFT-----GNRTLKYWLRGP  231 (310)
Q Consensus       186 ~~~g~~~~~~~~l~~pnGIa~~~dg-~~Lyv~d~~-----~~~I~~~~~~~~  231 (310)
                      .++|+.+++.+.-.+-+=+.++|.. ..|.+|.-+     ..|||.++.+|.
T Consensus       175 l~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  175 LKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             TTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             CCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence            9999999887655555666666532 344444332     346777776654

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=95.31  E-value=0.83  Score=39.88  Aligned_cols=174  Identities=17%  Similarity=0.122  Sum_probs=95.7

Q ss_pred             CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCcccc-CccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFH-FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~-~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      .+-.||.+-+.+|.||-.....+|+.||+.++..+.+....-...+. ..-++.+.|.-.+|.|.               
T Consensus        27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv---------------   91 (236)
T PF14339_consen   27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV---------------   91 (236)
T ss_pred             CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE---------------
Confidence            35568888778999998755667999999999877662111111111 12244444433455443               


Q ss_pred             eecCCCceEEEEcCCCCeEEEeecCCCCCc------------eeEEccC------CCEEEEEecCCCeEEEEEecCCCCC
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPA------------GVAISVD------SSFLLVSEFTGNRTLKYWLRGPRAN  234 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pn------------GIa~~~d------g~~Lyv~d~~~~~I~~~~~~~~~~g  234 (310)
                         ..+|+-+|+++++|.+......+.++.            +.|+...      ..+||--|+..+++++-..  +..|
T Consensus        92 ---s~~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~p--pN~G  166 (236)
T PF14339_consen   92 ---SNTGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNP--PNDG  166 (236)
T ss_pred             ---ccCCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecC--CCCC
Confidence               234778888888887554443443332            3444422      4579999999888887642  2345


Q ss_pred             ceee-e--cCC-CCCceeeeCCCCCCc--EEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCCC
Q 048181          235 SFDI-I--NFQ-AKPHNIKRNPGLLQT--FWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEAQ  294 (310)
Q Consensus       235 ~~~~-~--~l~-g~Pdgl~~d~~~dG~--l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~  294 (310)
                      +... .  ++. ..--|+-+....++.  .|.......       ..+.++| ..|+....=.++.+
T Consensus       167 tL~~vG~LGvd~~~~~gFDI~~~~~~~~~a~a~~~~~~-------~~LY~vdL~TG~at~~g~i~~~  226 (236)
T PF14339_consen  167 TLNTVGPLGVDAAGDAGFDIAGDGNGGNAAYAVLGVGG-------SGLYTVDLTTGAATLVGQIGGG  226 (236)
T ss_pred             cEEeeeccccccCcccceeeecCCCcceEEEEEecCCC-------cEEEEEECCCcccEEeeecCCC
Confidence            5433 1  221 112234443200222  233332111       3677777 45777666666653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.26  E-value=0.099  Score=32.10  Aligned_cols=40  Identities=20%  Similarity=0.269  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEc
Q 048181          151 TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAIS  207 (310)
Q Consensus       151 ~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~  207 (310)
                      ++++|+++..                 .++|..+|+.+++......-...|.+|+++
T Consensus         3 ~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         3 GTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            5679999864                 367888998877665555555789999885

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=95.24  E-value=0.74  Score=43.03  Aligned_cols=186  Identities=15%  Similarity=0.120  Sum_probs=97.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ....-++|.|+|..+.+...+..=.-+|...+.+...          .+|        -...-.++++. .+|.|..+-+
T Consensus       262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~----------QEG--------Hs~~v~~iaf~-~DGSL~~tGG  322 (459)
T KOG0272|consen  262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL----------QEG--------HSKGVFSIAFQ-PDGSLAATGG  322 (459)
T ss_pred             hhheeeeecCCCceeeecccccchhhcccccchhhHh----------hcc--------cccccceeEec-CCCceeeccC
Confidence            3444567777777555555444333334333222111          011        11223478896 7898876533


Q ss_pred             CCcE-EEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 YSGL-LVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~~gi-~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ...+ ...|..+|+-..+.   +| +....-+|+++| +|....|.+..               ..-+||.+... ..+-
T Consensus       323 lD~~~RvWDlRtgr~im~L---~g-H~k~I~~V~fsP-NGy~lATgs~D---------------nt~kVWDLR~r-~~ly  381 (459)
T KOG0272|consen  323 LDSLGRVWDLRTGRCIMFL---AG-HIKEILSVAFSP-NGYHLATGSSD---------------NTCKVWDLRMR-SELY  381 (459)
T ss_pred             ccchhheeecccCcEEEEe---cc-cccceeeEeECC-CceEEeecCCC---------------CcEEEeeeccc-ccce
Confidence            2222 23466666543332   22 344456899999 69988887653               12345555432 2222


Q ss_pred             EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEe
Q 048181          193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                      .+...-..-..+.++|+....+++.+..+.+..+.-.+-  ...+. .+-.+-.-.+.+..  ||...++..
T Consensus       382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~--~~~ksLaGHe~kV~s~Dis~--d~~~i~t~s  449 (459)
T KOG0272|consen  382 TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW--SPLKSLAGHEGKVISLDISP--DSQAIATSS  449 (459)
T ss_pred             ecccccchhhheEecccCCeEEEEcccCcceeeecCCCc--ccchhhcCCccceEEEEecc--CCceEEEec
Confidence            233333345689999976678888887777665543211  00111 22222344455666  666555543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=95.17  E-value=2.2  Score=38.02  Aligned_cols=156  Identities=12%  Similarity=0.053  Sum_probs=94.0

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           33 AFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      -.-.-++++++|.+-++++..+..|.-++--|... ++...                  .....-.-+.+.|...+.++.
T Consensus       105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~------------------~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen  105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED------------------SHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC------------------CCcCcEEEEEEcCCCCCcEEE
Confidence            35677888888888788888888887777655432 22110                  002234457776544455555


Q ss_pred             eCC-Cc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          112 DAY-SG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       112 d~~-~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      ... .. +-..|+++-++   .....| +-...|-++++| +|.+-.+.                 ..+|.++-+|.+.+
T Consensus       167 s~s~DktvKvWnl~~~~l---~~~~~g-h~~~v~t~~vSp-DGslcasG-----------------gkdg~~~LwdL~~~  224 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQL---RTTFIG-HSGYVNTVTVSP-DGSLCASG-----------------GKDGEAMLWDLNEG  224 (315)
T ss_pred             EccCCceEEEEccCCcch---hhcccc-ccccEEEEEECC-CCCEEecC-----------------CCCceEEEEEccCC
Confidence            443 23 55667776443   233344 235678999999 59987662                 23567777776555


Q ss_pred             eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          190 QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       190 ~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      +--.-.+....-|.++|+|..  .+.+-.....|..++++.
T Consensus       225 k~lysl~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  225 KNLYSLEAFDIVNSLCFSPNR--YWLCAATATSIKIWDLES  263 (315)
T ss_pred             ceeEeccCCCeEeeEEecCCc--eeEeeccCCceEEEeccc
Confidence            443334455567999999964  444444444576677654

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.10  E-value=0.11  Score=32.42  Aligned_cols=39  Identities=13%  Similarity=0.169  Sum_probs=30.2

Q ss_pred             CCEEEEEeCCC-eEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           45 GGAFYTGVADG-RILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        45 G~l~~~d~~~g-~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      +++||+|.... +|.+.+.+|+. +.+.                   ......|.||++|
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi-------------------~~~l~~P~giaVD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVI-------------------SDDLQHPEGIAVD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEE-------------------ESSTSSEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEE-------------------ECCCCCcCEEEEC
Confidence            46899999999 99999999764 3332                   1346789999997

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=95.04  E-value=2.1  Score=40.13  Aligned_cols=199  Identities=18%  Similarity=0.209  Sum_probs=106.5

Q ss_pred             eeeecceEEE-eCCCCCCCcceEEEccC--CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCC
Q 048181           18 VFSIPTFTKI-LFPPKAFGGESIAFEPV--GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICR   94 (310)
Q Consensus        18 ~~~~~~~~~~-~~~~~~~~Pegia~d~~--G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   94 (310)
                      +|+-+....+ .|-|-....-++.|.|.  +.-+.+...+|.+.-++.++.. .+.                 +++.-..
T Consensus       201 vW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-~l~-----------------~l~gH~~  262 (459)
T KOG0272|consen  201 VWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-PLQ-----------------DLEGHLA  262 (459)
T ss_pred             EeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-chh-----------------hhhcchh
Confidence            4444444332 34444455667778775  3334555556655555544321 110                 1122233


Q ss_pred             ceeeEEEecCCCeEEEEeCCCcEE-EEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181           95 RTFGLALHYATRQLYIADAYSGLL-VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        95 ~P~Gla~d~~~g~LyVad~~~gi~-~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      +-.-++++ ++|+.+.+-....-+ ..|..++. +.+...  | +-...-++++.+ +|.+..|....            
T Consensus       263 RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~-ElL~QE--G-Hs~~v~~iaf~~-DGSL~~tGGlD------------  324 (459)
T KOG0272|consen  263 RVSRVAFH-PSGKFLGTASFDSTWRLWDLETKS-ELLLQE--G-HSKGVFSIAFQP-DGSLAATGGLD------------  324 (459)
T ss_pred             hheeeeec-CCCceeeecccccchhhcccccch-hhHhhc--c-cccccceeEecC-CCceeeccCcc------------
Confidence            44568897 688877764443322 23555532 222222  2 223456899999 59998886532            


Q ss_pred             ecCCCceEEEEcCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC---CCCceee
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ---AKPHNIK  249 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~---g~Pdgl~  249 (310)
                         .-|+||  |..+|.-..+.+ .+.---+++|+|.| +.+.+-+..+.+.+.++....  .  +..+|   .....++
T Consensus       325 ---~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~--~--ly~ipAH~nlVS~Vk  394 (459)
T KOG0272|consen  325 ---SLGRVW--DLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS--E--LYTIPAHSNLVSQVK  394 (459)
T ss_pred             ---chhhee--ecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc--c--ceecccccchhhheE
Confidence               236665  444565544443 34445799999998 566777777776666665421  1  22222   2345677


Q ss_pred             eCCCCCCcEEEEEe
Q 048181          250 RNPGLLQTFWEAAI  263 (310)
Q Consensus       250 ~d~~~dG~l~va~~  263 (310)
                      +++. .|++.+++.
T Consensus       395 ~~p~-~g~fL~Tas  407 (459)
T KOG0272|consen  395 YSPQ-EGYFLVTAS  407 (459)
T ss_pred             eccc-CCeEEEEcc
Confidence            7751 455555543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.02  E-value=0.94  Score=42.35  Aligned_cols=146  Identities=12%  Similarity=0.133  Sum_probs=76.5

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          104 ATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       104 ~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      .+|++|+......|+.+|+++++.. ......+ .....++-.+.. +|+||+++..                  |.+|.
T Consensus        67 ~dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~-~~~~~~~~~~~~-~G~i~~g~~~------------------g~~y~  125 (370)
T COG1520          67 GDGTVYVGTRDGNIFALNPDTGLVK-WSYPLLG-AVAQLSGPILGS-DGKIYVGSWD------------------GKLYA  125 (370)
T ss_pred             eCCeEEEecCCCcEEEEeCCCCcEE-ecccCcC-cceeccCceEEe-CCeEEEeccc------------------ceEEE
Confidence            6899999844445999999988743 2112111 112344445555 5999999864                  46777


Q ss_pred             EcCCCCeEEEee--cC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce--e------e-ecCCCCCceeeeC
Q 048181          184 YNPRSSQVTVLL--RN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF--D------I-INFQAKPHNIKRN  251 (310)
Q Consensus       184 ~d~~~g~~~~~~--~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~------~-~~l~g~Pdgl~~d  251 (310)
                      +|..+|+..-..  .. ....... +-.|+ .+|+.. ..+.++.++.+.   |+.  +      + ....+.|-    .
T Consensus       126 ld~~~G~~~W~~~~~~~~~~~~~~-v~~~~-~v~~~s-~~g~~~al~~~t---G~~~W~~~~~~~~~~~~~~~~~----~  195 (370)
T COG1520         126 LDASTGTLVWSRNVGGSPYYASPP-VVGDG-TVYVGT-DDGHLYALNADT---GTLKWTYETPAPLSLSIYGSPA----I  195 (370)
T ss_pred             EECCCCcEEEEEecCCCeEEecCc-EEcCc-EEEEec-CCCeEEEEEccC---CcEEEEEecCCccccccccCce----e
Confidence            777656543221  11 1111222 22233 244332 345555554431   111  1      1 11122222    4


Q ss_pred             CCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEE
Q 048181          252 PGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTI  289 (310)
Q Consensus       252 ~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~  289 (310)
                      .  +|.+|+.... ..      ..+..+|+ +|+..-..
T Consensus       196 ~--~~~vy~~~~~-~~------~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         196 A--SGTVYVGSDG-YD------GILYALNAEDGTLKWSQ  225 (370)
T ss_pred             e--cceEEEecCC-Cc------ceEEEEEccCCcEeeee
Confidence            4  6888888774 10      26888887 78877663

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.01  E-value=2.6  Score=40.02  Aligned_cols=139  Identities=13%  Similarity=0.128  Sum_probs=73.9

Q ss_pred             CCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           93 CRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        93 ~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      .+.-.+++++.+...||++.....|+.+|............ +|  -..-.-++++. +|..+.+.+.            
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G--~v~gts~~~S~-ng~ylA~GS~------------  407 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DG--SVHGTSLCISL-NGSYLATGSD------------  407 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cC--ccceeeeeecC-CCceEEeccC------------
Confidence            34556788873344566665555699999876543221111 11  12234567777 4774444332            


Q ss_pred             eecCCCceEEEEcCCC----CeEEE--eecCCC-CCceeEEccCCCEEEEEecC-CCeEEEEEecCCCCCceee-ecCC-
Q 048181          173 ITNDSTGRLLSYNPRS----SQVTV--LLRNLT-GPAGVAISVDSSFLLVSEFT-GNRTLKYWLRGPRANSFDI-INFQ-  242 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~----g~~~~--~~~~l~-~pnGIa~~~dg~~Lyv~d~~-~~~I~~~~~~~~~~g~~~~-~~l~-  242 (310)
                           .|-|-.||.++    ...++  ..+++. .-+.|+|++|...|-++... .+.++-+.+-.     ..+ .+.| 
T Consensus       408 -----~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS-----~TVFsNfP~  477 (514)
T KOG2055|consen  408 -----SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS-----CTVFSNFPT  477 (514)
T ss_pred             -----cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc-----eeeeccCCC
Confidence                 35555565321    11111  112222 34789999999866665543 34455444421     112 2332 


Q ss_pred             -----CCCceeeeCCCCCCcEE
Q 048181          243 -----AKPHNIKRNPGLLQTFW  259 (310)
Q Consensus       243 -----g~Pdgl~~d~~~dG~l~  259 (310)
                           +.+..|++.+  .|.+.
T Consensus       478 ~n~~vg~vtc~aFSP--~sG~l  497 (514)
T KOG2055|consen  478 SNTKVGHVTCMAFSP--NSGYL  497 (514)
T ss_pred             CCCcccceEEEEecC--CCceE
Confidence                 5788899998  66544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=94.97  E-value=1.1  Score=39.47  Aligned_cols=132  Identities=8%  Similarity=0.033  Sum_probs=75.4

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          104 ATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       104 ~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      .+..++-+.....|...|..++....-.. ..    ..++.+.+++ +|++..+-.+                  +.|-.
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~----s~VtSlEvs~-dG~ilTia~g------------------ssV~F  209 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FN----SPVTSLEVSQ-DGRILTIAYG------------------SSVKF  209 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEEEEe-cC----CCCcceeecc-CCCEEEEecC------------------ceeEE
Confidence            45555543222347777877765432211 11    2367888998 4887654322                  34666


Q ss_pred             EcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEE
Q 048181          184 YNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEA  261 (310)
Q Consensus       184 ~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va  261 (310)
                      +|+++-.+-.-.+-...-+.-.++|+. .+||+--....+++||++..  .+.+.  .+-+|-...+.+.+  ||.+|..
T Consensus       210 wdaksf~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSP--dGE~yAs  284 (334)
T KOG0278|consen  210 WDAKSFGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSP--DGELYAS  284 (334)
T ss_pred             eccccccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECC--CCceeec
Confidence            676543321111111233566788986 58999888888999998742  11221  33344346677777  8888776


Q ss_pred             Eec
Q 048181          262 AII  264 (310)
Q Consensus       262 ~~~  264 (310)
                      -..
T Consensus       285 GSE  287 (334)
T KOG0278|consen  285 GSE  287 (334)
T ss_pred             cCC
Confidence            443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.97  E-value=0.2  Score=45.98  Aligned_cols=180  Identities=13%  Similarity=0.134  Sum_probs=94.7

Q ss_pred             eeecceEEEeCCCCCCCcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee
Q 048181           19 FSIPTFTKILFPPKAFGGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF   97 (310)
Q Consensus        19 ~~~~~~~~~~~~~~~~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~   97 (310)
                      ||-|=+..+  .|--.|...+|-+|+. ..++++..+|.|.-++........                  .+....+--.
T Consensus        54 fakPFv~~L--~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~------------------~f~AH~G~V~  113 (433)
T KOG0268|consen   54 FAKPFVGSL--DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR------------------TFKAHEGLVR  113 (433)
T ss_pred             hhccchhhc--cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh------------------eeecccCcee
Confidence            344444444  4445667778877765 567888889999999887432111                  0112334567


Q ss_pred             eEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEE--------cCCCc-----c
Q 048181           98 GLALHYATRQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFT--------DASGV-----Y  163 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvt--------d~~~~-----~  163 (310)
                      ||+++ .+..++|.|... ..|+++..  -+.++.....      .-|+.... .++++.|        |....     +
T Consensus       114 Gi~v~-~~~~~tvgdDKtvK~wk~~~~--p~~tilg~s~------~~gIdh~~-~~~~FaTcGe~i~IWD~~R~~Pv~sm  183 (433)
T KOG0268|consen  114 GICVT-QTSFFTVGDDKTVKQWKIDGP--PLHTILGKSV------YLGIDHHR-KNSVFATCGEQIDIWDEQRDNPVSSM  183 (433)
T ss_pred             eEEec-ccceEEecCCcceeeeeccCC--cceeeecccc------cccccccc-ccccccccCceeeecccccCCcccee
Confidence            99997 445555554432 25565532  2222221100      01122221 1222222        11100     0


Q ss_pred             Cc--cc--------eeE-eeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          164 DF--RT--------IVK-LNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       164 ~~--~~--------~~~-~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      .+  ..        ... .+.....+++++.||...+....-.---..+|+|+|+| ..+.|++-...+.++-||..
T Consensus       184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR  259 (433)
T ss_pred             ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence            00  00        000 11223457789999976554322121224799999999 55899999999999998864

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=94.96  E-value=2.4  Score=37.48  Aligned_cols=84  Identities=8%  Similarity=0.167  Sum_probs=55.0

Q ss_pred             eEEEEcCCCCeEEEeec-------CCCCCceeEEccCCC----EEEEEecCCCeEEEEEecCCCCCcee---e--ecCCC
Q 048181          180 RLLSYNPRSSQVTVLLR-------NLTGPAGVAISVDSS----FLLVSEFTGNRTLKYWLRGPRANSFD---I--INFQA  243 (310)
Q Consensus       180 ~l~~~d~~~g~~~~~~~-------~l~~pnGIa~~~dg~----~Lyv~d~~~~~I~~~~~~~~~~g~~~---~--~~l~g  243 (310)
                      .+|.+||+.+.++.+.+       +++.|.|+|+..+.+    ++||+. ..+.|..|.+-....|.+.   +  ..++.
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t  205 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVRQFKIPT  205 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeEeeecCC
Confidence            47788887776665543       466789999987644    344443 4578888887533233322   1  34454


Q ss_pred             CCceeeeCCCCCCcEEEEEecC
Q 048181          244 KPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      --.||..|.| -|.||++....
T Consensus       206 QTEG~VaDdE-tG~LYIaeEdv  226 (364)
T COG4247         206 QTEGMVADDE-TGFLYIAEEDV  226 (364)
T ss_pred             cccceeeccc-cceEEEeeccc
Confidence            5678888775 89999997664

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.96  E-value=2.3  Score=42.58  Aligned_cols=154  Identities=17%  Similarity=0.139  Sum_probs=89.3

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEE
Q 048181           39 IAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLL  118 (310)
Q Consensus        39 ia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~  118 (310)
                      ++|+++|..+|+.. +.+|..++...+...+... ++               .....-..+++.+++..||.+-...-+.
T Consensus        25 ~~~s~nG~~L~t~~-~d~Vi~idv~t~~~~l~s~-~~---------------ed~d~ita~~l~~d~~~L~~a~rs~llr   87 (775)
T KOG0319|consen   25 VAWSSNGQHLYTAC-GDRVIIIDVATGSIALPSG-SN---------------EDEDEITALALTPDEEVLVTASRSQLLR   87 (775)
T ss_pred             eeECCCCCEEEEec-CceEEEEEccCCceecccC-Cc---------------cchhhhheeeecCCccEEEEeeccceEE
Confidence            89999999888875 5567777665433211110 00               1111233577764444555554333355


Q ss_pred             EEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCC
Q 048181          119 VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL  198 (310)
Q Consensus       119 ~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l  198 (310)
                      .++.++++...........|.   --++++| +|.+.-|-                 ..+|++-.+|-..+..+.-..+.
T Consensus        88 v~~L~tgk~irswKa~He~Pv---i~ma~~~-~g~LlAtg-----------------gaD~~v~VWdi~~~~~th~fkG~  146 (775)
T KOG0319|consen   88 VWSLPTGKLIRSWKAIHEAPV---ITMAFDP-TGTLLATG-----------------GADGRVKVWDIKNGYCTHSFKGH  146 (775)
T ss_pred             EEEcccchHhHhHhhccCCCe---EEEEEcC-CCceEEec-----------------cccceEEEEEeeCCEEEEEecCC
Confidence            567776643222222222222   3689999 57665443                 23567777777666666666554


Q ss_pred             CC-CceeEEccCCCE-EEEEecCCCeEEEEEecC
Q 048181          199 TG-PAGVAISVDSSF-LLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       199 ~~-pnGIa~~~dg~~-Lyv~d~~~~~I~~~~~~~  230 (310)
                      +. ...+.|.|+-++ |+++-...++++.|++..
T Consensus       147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~  180 (775)
T KOG0319|consen  147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND  180 (775)
T ss_pred             CceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence            43 367888887653 556667788899998864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.88  E-value=4.1  Score=40.94  Aligned_cols=182  Identities=8%  Similarity=-0.012  Sum_probs=93.7

Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceee-EEEecCCCeEEEEeCCC
Q 048181           37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFG-LALHYATRQLYIADAYS  115 (310)
Q Consensus        37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~G-la~d~~~g~LyVad~~~  115 (310)
                      .|..+.|+.++++....++.++-+..+...-.+..                   .....|.+ +.|. +.|.-|++-.+.
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-------------------~GH~~PVwdV~F~-P~GyYFatas~D  514 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-------------------KGHLAPVWDVQFA-PRGYYFATASHD  514 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEe-------------------cCCCcceeeEEec-CCceEEEecCCC
Confidence            45667777776666666676666666542222221                   12224443 4453 555444432222


Q ss_pred             ---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE-
Q 048181          116 ---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV-  191 (310)
Q Consensus       116 ---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~-  191 (310)
                         ++|..|.. .-.+.++.     ++.-.+-+.++| +.+...|.+..                 -++-.+|..+|.. 
T Consensus       515 ~tArLWs~d~~-~PlRifag-----hlsDV~cv~FHP-Ns~Y~aTGSsD-----------------~tVRlWDv~~G~~V  570 (707)
T KOG0263|consen  515 QTARLWSTDHN-KPLRIFAG-----HLSDVDCVSFHP-NSNYVATGSSD-----------------RTVRLWDVSTGNSV  570 (707)
T ss_pred             ceeeeeecccC-Cchhhhcc-----cccccceEEECC-cccccccCCCC-----------------ceEEEEEcCCCcEE
Confidence               36655532 22233332     233344578999 46555555432                 1222223323322 


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      +.+...-.---.+++||+|++| ++-...+.|..+|+.+... ..++.+-.+--+-|.+..  ||++.++.....
T Consensus       571 RiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~--dg~vLasgg~Dn  641 (707)
T KOG0263|consen  571 RIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSR--DGNVLASGGADN  641 (707)
T ss_pred             EEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEec--CCCEEEecCCCC
Confidence            2222211223678999999854 5555677777777754210 011111144566788999  999998877754

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.88  E-value=0.13  Score=31.57  Aligned_cols=41  Identities=17%  Similarity=0.069  Sum_probs=29.2

Q ss_pred             cCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeC
Q 048181          208 VDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRN  251 (310)
Q Consensus       208 ~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d  251 (310)
                      ||+++||+++...+.|..++...   +...- ......|.+|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~---~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT---NKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC---CeEEEEEECCCCCceEEeC
Confidence            68899999999999999998742   22211 2334569988875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PTZ00420 coronin; Provisional

Probab=94.81  E-value=1.6  Score=43.45  Aligned_cols=123  Identities=7%  Similarity=0.011  Sum_probs=74.0

Q ss_pred             CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe---------EEEeecCCCCCceeEEccCCC
Q 048181          141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ---------VTVLLRNLTGPAGVAISVDSS  211 (310)
Q Consensus       141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~---------~~~~~~~l~~pnGIa~~~dg~  211 (310)
                      ...+++++|.++++++|-+.                 +|.+..+|..++.         +..+...-..-+.|+|+|++.
T Consensus        76 ~V~~lafsP~~~~lLASgS~-----------------DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~  138 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSE-----------------DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY  138 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeC-----------------CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC
Confidence            46788888843666665432                 3555555543221         111222223457999999998


Q ss_pred             EEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC-CcEEEEE
Q 048181          212 FLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF-GAVLDTI  289 (310)
Q Consensus       212 ~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~  289 (310)
                      .++++-...+.|..+++...   .... ...+.....++++.  +|.+.++....        ..+..+|+. |+++..+
T Consensus       139 ~iLaSgS~DgtIrIWDl~tg---~~~~~i~~~~~V~Slswsp--dG~lLat~s~D--------~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        139 YIMCSSGFDSFVNIWDIENE---KRAFQINMPKKLSSLKWNI--KGNLLSGTCVG--------KHMHIIDPRKQEIASSF  205 (568)
T ss_pred             eEEEEEeCCCeEEEEECCCC---cEEEEEecCCcEEEEEECC--CCCEEEEEecC--------CEEEEEECCCCcEEEEE
Confidence            77777777888888887532   2211 22233456788999  99988765433        256667753 6666655


Q ss_pred             ecCC
Q 048181          290 SFEA  293 (310)
Q Consensus       290 ~~p~  293 (310)
                      ....
T Consensus       206 ~gH~  209 (568)
T PTZ00420        206 HIHD  209 (568)
T ss_pred             eccc
Confidence            5443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=94.77  E-value=2.1  Score=39.53  Aligned_cols=143  Identities=10%  Similarity=0.116  Sum_probs=85.6

Q ss_pred             eeEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181           97 FGLALHYATRQLYIADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      ..|.+. ++|..+++...  ..|...|++++....+.-.    .+....=+..+|+ |..+|+-+-.             
T Consensus       199 tsmqwn-~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----glgg~slLkwSPd-gd~lfaAt~d-------------  259 (445)
T KOG2139|consen  199 TSMQWN-EDGTILVTASFGSSSIMIWDPDTGQKIPLIPK----GLGGFSLLKWSPD-GDVLFAATCD-------------  259 (445)
T ss_pred             eEEEEc-CCCCEEeecccCcceEEEEcCCCCCccccccc----CCCceeeEEEcCC-CCEEEEeccc-------------
Confidence            367775 67877775433  3488888888766555311    1112234788995 7766654321             


Q ss_pred             cCCCceEEEEcCCC--CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC------cee--e-ecC--
Q 048181          175 NDSTGRLLSYNPRS--SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN------SFD--I-INF--  241 (310)
Q Consensus       175 ~~~~G~l~~~d~~~--g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g------~~~--~-~~l--  241 (310)
                           +++++-..+  -..+...-+-..-.+-+++|+|++|+++-+...+|+++..++...-      ..+  + ..+  
T Consensus       260 -----avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e  334 (445)
T KOG2139|consen  260 -----AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE  334 (445)
T ss_pred             -----ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence                 133332111  1112222122255788899999999999999999999988765211      011  1 222  


Q ss_pred             ----------CCCCceeeeCCCCCCcEEEEEecC
Q 048181          242 ----------QAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       242 ----------~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                                -|.+.-|+.|+  .|+..+...-+
T Consensus       335 ~ti~ag~~l~cgeaq~lawDp--sGeyLav~fKg  366 (445)
T KOG2139|consen  335 VTICAGQRLCCGEAQCLAWDP--SGEYLAVIFKG  366 (445)
T ss_pred             hhhhcCcccccCccceeeECC--CCCEEEEEEcC
Confidence                      14588899999  99776665544

>smart00284 OLF Olfactomedin-like domains

Probab=94.70  E-value=2.9  Score=37.08  Aligned_cols=173  Identities=11%  Similarity=0.149  Sum_probs=92.8

Q ss_pred             EEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181           25 TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY  103 (310)
Q Consensus        25 ~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~  103 (310)
                      +++.+|-...|.--++.  +|.+||---....|.|++...+.+. ........+.    .  .....-....-..+|+| 
T Consensus        66 ~~~~Lp~~~~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~----~--~~~Y~~~~~sdiDlAvD-  136 (255)
T smart00284       66 TDHPLPHAGQGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYN----N--RFPYAWGGFSDIDLAVD-  136 (255)
T ss_pred             eEEECCCccccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccc----c--ccccccCCCccEEEEEc-
Confidence            55677766666666666  5899998777889999998865432 1110000000    0  00000011122467886 


Q ss_pred             CCCeEEEE---eCCCc---EEEEeCCCCeEEEee-ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181          104 ATRQLYIA---DAYSG---LLVVGPNGRLATQLA-TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus       104 ~~g~LyVa---d~~~g---i~~id~~~~~~~~~~-~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                       +..|||.   ....+   |-++|+++-+++... +...-.  ..-|..-+.   |.||++++..              .
T Consensus       137 -E~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~--sa~naFmvC---GvLY~~~s~~--------------~  196 (255)
T smart00284      137 -ENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKR--SASNAFMIC---GILYVTRSLG--------------S  196 (255)
T ss_pred             -CCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcc--cccccEEEe---eEEEEEccCC--------------C
Confidence             5558875   22233   458998876554332 222211  122444443   8999998632              1


Q ss_pred             CCce-EEEEcCCCCeEEEeecCCC----CCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181          177 STGR-LLSYNPRSSQVTVLLRNLT----GPAGVAISVDSSFLLVSEFTGNRTLKYWL  228 (310)
Q Consensus       177 ~~G~-l~~~d~~~g~~~~~~~~l~----~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~  228 (310)
                      ...+ .+.||..+++-+.+.=.+.    .-.-|..+|..+.||+=|.  +.+..|++
T Consensus       197 ~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdn--g~~l~Y~v  251 (255)
T smart00284      197 KGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNN--GHLVHYDI  251 (255)
T ss_pred             CCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeC--CeEEEEEE
Confidence            1223 4667876654333221222    2345888898888998654  44555554

>PTZ00420 coronin; Provisional

Probab=94.64  E-value=5.3  Score=39.80  Aligned_cols=163  Identities=12%  Similarity=0.133  Sum_probs=89.0

Q ss_pred             CCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCC-ce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           30 PPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPD-GF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        30 ~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g-~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      .+.-....+++|.|+ ++++++...++.|..++... +.  ..+.       ...+      .+.........++++ ++
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-------~p~~------~L~gH~~~V~sVaf~-P~  136 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-------DPQC------ILKGHKKKISIIDWN-PM  136 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-------cceE------EeecCCCcEEEEEEC-CC
Confidence            333345778999986 78888888899988887542 11  1000       0000      001112334578887 44


Q ss_pred             C-eEEEEeC-CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          106 R-QLYIADA-YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       106 g-~LyVad~-~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      + .++++.. ...|..+|..+++...... ..    .....+++++ +|.++++...                 ++.+..
T Consensus       137 g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~----~~V~Slswsp-dG~lLat~s~-----------------D~~IrI  193 (568)
T PTZ00420        137 NYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP----KKLSSLKWNI-KGNLLSGTCV-----------------GKHMHI  193 (568)
T ss_pred             CCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC----CcEEEEEECC-CCCEEEEEec-----------------CCEEEE
Confidence            5 4444433 3347777887665321111 11    2356889999 4888876432                 356788


Q ss_pred             EcCCCCeEEEeecCCCCC-cee-----EEccCCCEEEEEecCC---CeEEEEEec
Q 048181          184 YNPRSSQVTVLLRNLTGP-AGV-----AISVDSSFLLVSEFTG---NRTLKYWLR  229 (310)
Q Consensus       184 ~d~~~g~~~~~~~~l~~p-nGI-----a~~~dg~~Lyv~d~~~---~~I~~~~~~  229 (310)
                      +|+.+++.......-... +..     .+++|+++|..+-...   +.|..+++.
T Consensus       194 wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        194 IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            888776543322211111 111     2357887666554433   367777765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=94.63  E-value=3.4  Score=39.33  Aligned_cols=143  Identities=12%  Similarity=0.106  Sum_probs=82.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeEEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~LyVa  111 (310)
                      ..-.+++|..+|+++.++..+|.++-++.+|.+. ++.                     .-..| ..|.+. ++|+-+++
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~---------------------~HkgPI~slKWn-k~G~yilS  293 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG---------------------QHKGPIFSLKWN-KKGTYILS  293 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh---------------------ccCCceEEEEEc-CCCCEEEe
Confidence            3566899999999999999999999999887653 221                     11123 368885 56654444


Q ss_pred             e-CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce--EEEEcCCC
Q 048181          112 D-AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR--LLSYNPRS  188 (310)
Q Consensus       112 d-~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~--l~~~d~~~  188 (310)
                      . ....+..+|..+|+..+....-.. +   .-|+..-. +.. |++-                 ..+|.  |++++.+ 
T Consensus       294 ~~vD~ttilwd~~~g~~~q~f~~~s~-~---~lDVdW~~-~~~-F~ts-----------------~td~~i~V~kv~~~-  349 (524)
T KOG0273|consen  294 GGVDGTTILWDAHTGTVKQQFEFHSA-P---ALDVDWQS-NDE-FATS-----------------STDGCIHVCKVGED-  349 (524)
T ss_pred             ccCCccEEEEeccCceEEEeeeeccC-C---ccceEEec-Cce-Eeec-----------------CCCceEEEEEecCC-
Confidence            3 334477788777765443211111 0   01232221 111 2211                 12333  5556654 


Q ss_pred             CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeE
Q 048181          189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRT  223 (310)
Q Consensus       189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I  223 (310)
                      ..+..+...-..-|+|-++|.|+ |+.+.+....+
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~Tl  383 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTL  383 (524)
T ss_pred             CcceeeecccCceEEEEECCCCc-eEEEecCCCee
Confidence            44555555444568999999987 66665555443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=94.63  E-value=2.6  Score=40.50  Aligned_cols=105  Identities=11%  Similarity=0.025  Sum_probs=67.3

Q ss_pred             CCCceEEEEcCCCCeEEEeecCC-CC-CceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCC
Q 048181          176 DSTGRLLSYNPRSSQVTVLLRNL-TG-PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNP  252 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~~~l-~~-pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~  252 (310)
                      ..+|.|..||-.......-+... .. ..||+|+|-...|+|+--...+|+.||..... ....+ ..-|  -.-+++.+
T Consensus       184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~y~~P--lstvaf~~  260 (673)
T KOG4378|consen  184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLTYSHP--LSTVAFSE  260 (673)
T ss_pred             ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-ccceeeecCC--cceeeecC
Confidence            34577777775422222112111 22 36999999988899999999999999986432 22222 2222  24588888


Q ss_pred             CCCCcEEEEEecCCCCCCCCceeeEEECCCCc--EEEEEecCC
Q 048181          253 GLLQTFWEAAIITRQPAGTPVPIGQRISAFGA--VLDTISFEA  293 (310)
Q Consensus       253 ~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~--~~~~~~~p~  293 (310)
                        +|.+.++....        ++++.||-.++  .+.+++...
T Consensus       261 --~G~~L~aG~s~--------G~~i~YD~R~~k~Pv~v~sah~  293 (673)
T KOG4378|consen  261 --CGTYLCAGNSK--------GELIAYDMRSTKAPVAVRSAHD  293 (673)
T ss_pred             --CceEEEeecCC--------ceEEEEecccCCCCceEeeecc
Confidence              99887776654        58888887664  566666554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=94.43  E-value=2.7  Score=35.57  Aligned_cols=147  Identities=12%  Similarity=0.141  Sum_probs=81.0

Q ss_pred             cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181          116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL  195 (310)
Q Consensus       116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~  195 (310)
                      .|+.++..+.....+.-...+    ...+++.+|++..+.+.-..                ...++..||.+...+..+ 
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~-   98 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSF-   98 (194)
T ss_pred             EEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEee-
Confidence            377776555443333111111    25799999953334333211                123566666653332222 


Q ss_pred             cCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecC-CCCCCCC
Q 048181          196 RNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIIT-RQPAGTP  272 (310)
Q Consensus       196 ~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~-~~~~~~~  272 (310)
                      . -...|.|.|+|+|++|.++...  .+.|..++....  .......- .....++.++  ||+..++.... |.   ..
T Consensus        99 ~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--~~i~~~~~-~~~t~~~WsP--dGr~~~ta~t~~r~---~~  169 (194)
T PF08662_consen   99 G-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--KKISTFEH-SDATDVEWSP--DGRYLATATTSPRL---RV  169 (194)
T ss_pred             c-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--EEeecccc-CcEEEEEEcC--CCCEEEEEEeccce---ec
Confidence            2 2356899999999988887654  467888876521  11111112 2367899999  99988776543 21   01


Q ss_pred             ceeeEEECCCCcEEEEEecC
Q 048181          273 VPIGQRISAFGAVLDTISFE  292 (310)
Q Consensus       273 ~~~v~~~~~~G~~~~~~~~p  292 (310)
                      ...+..++=+|+.+.....+
T Consensus       170 dng~~Iw~~~G~~l~~~~~~  189 (194)
T PF08662_consen  170 DNGFKIWSFQGRLLYKKPFD  189 (194)
T ss_pred             cccEEEEEecCeEeEecchh
Confidence            12345566678877766553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=94.41  E-value=2.2  Score=39.87  Aligned_cols=142  Identities=13%  Similarity=0.084  Sum_probs=81.1

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCC-ce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPD-GF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      -.+|++.  +..++++-.+++|+-++.-+ .. ..+                     +..+.-..+.+....-.|..+..
T Consensus       305 cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv---------------------~~gg~vtSl~ls~~g~~lLsssR  361 (459)
T KOG0288|consen  305 CNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV---------------------PLGGRVTSLDLSMDGLELLSSSR  361 (459)
T ss_pred             ccceEec--ceeeeecccccceEEEeccCCceeeEe---------------------ecCcceeeEeeccCCeEEeeecC
Confidence            3345543  34456666677777776332 21 111                     22334445555423345665644


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      .+.+-.||..+.++........-+--.-.+-+.++| ++....+                 +..+|+||.++..+++++.
T Consensus       362 Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaA-----------------GS~dgsv~iW~v~tgKlE~  423 (459)
T KOG0288|consen  362 DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAA-----------------GSADGSVYIWSVFTGKLEK  423 (459)
T ss_pred             CCceeeeecccccEEEEeeccccccccccceeEECC-CCceeee-----------------ccCCCcEEEEEccCceEEE
Confidence            455778888876665543321101111245677888 3553333                 2346999999998999887


Q ss_pred             eecCCCC---CceeEEccCCCEEEEEec
Q 048181          194 LLRNLTG---PAGVAISVDSSFLLVSEF  218 (310)
Q Consensus       194 ~~~~l~~---pnGIa~~~dg~~Lyv~d~  218 (310)
                      ....-..   -+.++|++-|+.|+-++.
T Consensus       424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  424 VLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             EeccCCCCcceEEEEEcCCCchhhcccC
Confidence            6654332   368899999987776654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.17  E-value=4  Score=38.37  Aligned_cols=155  Identities=12%  Similarity=0.084  Sum_probs=80.4

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ....-++|.||.+.+++.-.+-.+..++.+.+.......                 ......+..-++- ++|.=+|+-.
T Consensus       270 ~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-----------------~~~~~S~~sc~W~-pDg~~~V~Gs  331 (519)
T KOG0293|consen  270 QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-----------------SGLGFSVSSCAWC-PDGFRFVTGS  331 (519)
T ss_pred             CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-----------------cCcCCCcceeEEc-cCCceeEecC
Confidence            344557788887733333333344455555332111000                 0012344556664 5666667654


Q ss_pred             C-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 Y-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      . +++...|.++....    ...|.......|+++.+++-.++..+..                  ..+.-|+..+..-.
T Consensus       332 ~dr~i~~wdlDgn~~~----~W~gvr~~~v~dlait~Dgk~vl~v~~d------------------~~i~l~~~e~~~dr  389 (519)
T KOG0293|consen  332 PDRTIIMWDLDGNILG----NWEGVRDPKVHDLAITYDGKYVLLVTVD------------------KKIRLYNREARVDR  389 (519)
T ss_pred             CCCcEEEecCCcchhh----cccccccceeEEEEEcCCCcEEEEEecc------------------cceeeechhhhhhh
Confidence            4 45888898875432    2233333456799999964455544432                  12333332211101


Q ss_pred             EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      -+...-..-..+.+|.||+ +..+.-..+.|.-.++.
T Consensus       390 ~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~  425 (519)
T KOG0293|consen  390 GLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLE  425 (519)
T ss_pred             ccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecc
Confidence            0222222336789999998 55566677777777765

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=94.12  E-value=1.9  Score=43.71  Aligned_cols=147  Identities=12%  Similarity=0.098  Sum_probs=88.9

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-EeC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~  113 (310)
                      --.|+++|.-++++++...+|-+.-++-.++. ...                  .......+.++..+ +...+++ +..
T Consensus       495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~------------------~l~l~~~~~~iv~h-r~s~l~a~~~d  554 (910)
T KOG1539|consen  495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKK------------------SLRLGSSITGIVYH-RVSDLLAIALD  554 (910)
T ss_pred             ceeEEEecCCCceEEEccCcceEEEEecCCcc-eee------------------eeccCCCcceeeee-ehhhhhhhhcC
Confidence            45689999878877777777766666665432 110                  01122234566665 3333443 333


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ...|..+|..+.++   ...+.| .-+..||++++|+ |+=.++-+.                 ++.|..+|.-++..  
T Consensus       555 df~I~vvD~~t~kv---vR~f~g-h~nritd~~FS~D-grWlisasm-----------------D~tIr~wDlpt~~l--  610 (910)
T KOG1539|consen  555 DFSIRVVDVVTRKV---VREFWG-HGNRITDMTFSPD-GRWLISASM-----------------DSTIRTWDLPTGTL--  610 (910)
T ss_pred             ceeEEEEEchhhhh---hHHhhc-cccceeeeEeCCC-CcEEEEeec-----------------CCcEEEEeccCcce--
Confidence            44699999876543   233333 2356899999995 775554322                 36777788666653  


Q ss_pred             eecCCC---CCceeEEccCCCEEEEEecCCCeEEEE
Q 048181          194 LLRNLT---GPAGVAISVDSSFLLVSEFTGNRTLKY  226 (310)
Q Consensus       194 ~~~~l~---~pnGIa~~~dg~~Lyv~d~~~~~I~~~  226 (310)
                       ++.+.   -+-.+.++|.|.+|-.+....+-|+-+
T Consensus       611 -ID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  611 -IDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             -eeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence             33332   346899999999888777766666543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=93.96  E-value=3.9  Score=38.08  Aligned_cols=178  Identities=14%  Similarity=0.182  Sum_probs=100.9

Q ss_pred             hhcCCceeeeecceEE--EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCcccc
Q 048181           11 VFSLPRMVFSIPTFTK--ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLD   88 (310)
Q Consensus        11 ~~~~~~~~~~~~~~~~--~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~   88 (310)
                      ++-.|+-+|....+.+  -.++|.-.---++.|.|+|..+.++..+..++-+|.+...-.+.          |.|     
T Consensus        91 lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t----------~Kg-----  155 (480)
T KOG0271|consen   91 LVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT----------CKG-----  155 (480)
T ss_pred             EEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee----------ecC-----
Confidence            3445666665554444  24455434455788999999888888888888888875432221          322     


Q ss_pred             CCCCCCceeeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCC----CCeEEEEcCCCcc
Q 048181           89 LGPICRRTFGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG----TGVVYFTDASGVY  163 (310)
Q Consensus        89 ~~~~~~~P~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~----~G~lyvtd~~~~~  163 (310)
                         --..-.-+++. ++|..+++-...| |...||++|+.  +...+.| +-...+.++..|-    ..+.+.+      
T Consensus       156 ---H~~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~--~g~~l~g-H~K~It~Lawep~hl~p~~r~las------  222 (480)
T KOG0271|consen  156 ---HKNWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQ--IGRALRG-HKKWITALAWEPLHLVPPCRRLAS------  222 (480)
T ss_pred             ---CccEEEEEEEC-CCcchhhccccCCeEEEecCCCCCc--ccccccC-cccceeEEeecccccCCCccceec------
Confidence               12234567885 7888766544444 88899988753  2333443 2234556665541    1232222      


Q ss_pred             CccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCC-CceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          164 DFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG-PAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       164 ~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~-pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                                 ...+|.+..+|...++......+-.. -..+.+--+|  |+++-+..++|..++..
T Consensus       223 -----------~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~  276 (480)
T KOG0271|consen  223 -----------SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRAL  276 (480)
T ss_pred             -----------ccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEcc
Confidence                       23457777777665544443333222 2456665454  55566666766666543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.82  E-value=2.4  Score=39.76  Aligned_cols=170  Identities=14%  Similarity=0.219  Sum_probs=102.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ..+.+.+|-|||.-++++..++.|..++.+|... .+.            |       .....-..|++..++..++...
T Consensus       313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~------------g-------vr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE------------G-------VRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             CCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc------------c-------cccceeEEEEEcCCCcEEEEEe
Confidence            4688999999998899999999999999987541 111            0       1123345788753344566555


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCc----cCcc--------------ce------
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGV----YDFR--------------TI------  168 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~----~~~~--------------~~------  168 (310)
                      ....|..++.++..-+.+.+.  .+++   ....++. +|.+..++-...    ++..              .+      
T Consensus       374 ~d~~i~l~~~e~~~dr~lise--~~~i---ts~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF  447 (519)
T KOG0293|consen  374 VDKKIRLYNREARVDRGLISE--EQPI---TSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF  447 (519)
T ss_pred             cccceeeechhhhhhhccccc--cCce---eEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence            555577776654221112211  1122   2455665 366665543211    0000              00      


Q ss_pred             ----eEeeeecCCCceEEEEcCCCCeEEEeecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181          169 ----VKLNITNDSTGRLLSYNPRSSQVTVLLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWL  228 (310)
Q Consensus       169 ----~~~~~~~~~~G~l~~~d~~~g~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~  228 (310)
                          ..-+..+..++.||.++..+|++-....+ ...-|-++++|....++.+.+..+.|+...+
T Consensus       448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence                00134566788899999888876555544 3456999999988888888777777665543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=93.81  E-value=9.6  Score=39.57  Aligned_cols=185  Identities=11%  Similarity=0.089  Sum_probs=97.9

Q ss_pred             cceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           36 GESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        36 Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ..+++|.+. ++.+.+...++.|.-++...+.....                  +......-..+++++.++.++++-..
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~  596 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE------------------MKEHEKRVWSIDYSSADPTLLASGSD  596 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE------------------ecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence            457788764 66677777788888888764332111                  01122335678887446776665444


Q ss_pred             Cc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe--E
Q 048181          115 SG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ--V  191 (310)
Q Consensus       115 ~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~--~  191 (310)
                      .+ |..+|..++.......   ..  .....+.+.+.+|..+++-.                 .+|.++.||..+.+  .
T Consensus       597 Dg~v~iWd~~~~~~~~~~~---~~--~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~  654 (793)
T PLN00181        597 DGSVKLWSINQGVSIGTIK---TK--ANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPL  654 (793)
T ss_pred             CCEEEEEECCCCcEEEEEe---cC--CCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccc
Confidence            44 6677776543321111   11  12334555433466665543                 34778888875443  1


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC----cee-eecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN----SFD-IINFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g----~~~-~~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ..+...-..-..+.|. ++++ +++-+..+.|..+++.....+    ... +.+......-++++.  +|.+.++...
T Consensus       655 ~~~~~h~~~V~~v~f~-~~~~-lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~--~~~~lasgs~  728 (793)
T PLN00181        655 CTMIGHSKTVSYVRFV-DSST-LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSV--SDGYIATGSE  728 (793)
T ss_pred             eEecCCCCCEEEEEEe-CCCE-EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcC--CCCEEEEEeC
Confidence            2222222234678886 5664 556667777887777532111    111 112222345577887  7776555443

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=93.78  E-value=2.5  Score=38.56  Aligned_cols=126  Identities=15%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             ceeeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccC-------CCccccCccceEEe----CCCCeEEEEcCCCc
Q 048181           95 RTFGLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATGA-------EGQAFHFLDGLDVD----QGTGVVYFTDASGV  162 (310)
Q Consensus        95 ~P~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~-------~g~~~~~pndvavd----~~~G~lyvtd~~~~  162 (310)
                      ..+.+..+ .+|.++|+... ..|++|++++|++.......       .+..|.+-.|..+.    . ++.|-+=|....
T Consensus       145 HiNsV~~~-~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~-~~~IslFDN~~~  222 (299)
T PF14269_consen  145 HINSVDKD-DDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESND-DGTISLFDNANS  222 (299)
T ss_pred             Eeeeeeec-CCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCC-CCEEEEEcCCCC
Confidence            45678776 68888887654 35999999988875433221       11235556677776    4 466666554211


Q ss_pred             cCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCc--------eeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          163 YDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPA--------GVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       163 ~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pn--------GIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      -.       .......|+++.+|+.+.+++.+..-...|+        .+..-|+|+ ++|++...+++.-|+.+|
T Consensus       223 ~~-------~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G  290 (299)
T PF14269_consen  223 DF-------NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG  290 (299)
T ss_pred             CC-------CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence            00       0112356889999998766655443221232        334445666 677777777777776654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=93.76  E-value=4.4  Score=37.88  Aligned_cols=165  Identities=12%  Similarity=0.149  Sum_probs=92.6

Q ss_pred             CCCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           29 FPPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      |.|.-...--++|+|- .+++++.-.+..|.-++-+.+...+..                   .-...-..+.+. .+|.
T Consensus       127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l-------------------~hpd~i~S~sfn-~dGs  186 (472)
T KOG0303|consen  127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL-------------------DHPDMVYSMSFN-RDGS  186 (472)
T ss_pred             EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec-------------------CCCCeEEEEEec-cCCc
Confidence            3333334445677764 466777767777777776644322210                   111223467786 7888


Q ss_pred             EEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          108 LYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       108 LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      ++++... ..|..+|+..+++..-...-.|  . .|.-+.+-. +|.++.|..+..              .+-++-.+|+
T Consensus       187 ~l~TtckDKkvRv~dpr~~~~v~e~~~heG--~-k~~Raifl~-~g~i~tTGfsr~--------------seRq~aLwdp  248 (472)
T KOG0303|consen  187 LLCTTCKDKKVRVIDPRRGTVVSEGVAHEG--A-KPARAIFLA-SGKIFTTGFSRM--------------SERQIALWDP  248 (472)
T ss_pred             eeeeecccceeEEEcCCCCcEeeecccccC--C-CcceeEEec-cCceeeeccccc--------------cccceeccCc
Confidence            8887554 3488999988765332211122  2 222333444 477666554321              1112333444


Q ss_pred             CCCeEEEeecCCCCCceeE---EccCCCEEEEEecCCCeEEEEEecCC
Q 048181          187 RSSQVTVLLRNLTGPAGVA---ISVDSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       187 ~~g~~~~~~~~l~~pnGIa---~~~dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      ++-+.-.....+...|||.   +|+|.+.||++-.+.+.|+-|.+..+
T Consensus       249 ~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  249 NNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             ccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            4322222333444567776   47899999999999999988887643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=9.6  Score=39.42  Aligned_cols=166  Identities=17%  Similarity=0.174  Sum_probs=95.4

Q ss_pred             CCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc--eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG--FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      |......++.++|..+++++...++.|+.++.+..  ..+|.                    ....+-+=|+.+ +..+|
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--------------------rendRFW~laah-P~lNL  306 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--------------------RENDRFWILAAH-PELNL  306 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeee--------------------ccCCeEEEEEec-CCcce
Confidence            55667889999999998888888888888887743  22332                    233456678886 78999


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          109 YIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       109 yVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      |.|-+..|+.++-.+-.+           |     ..+++. ++-+|+-|.                    +|+.+|-.+
T Consensus       307 fAAgHDsGm~VFkleREr-----------p-----a~~v~~-n~LfYvkd~--------------------~i~~~d~~t  349 (1202)
T KOG0292|consen  307 FAAGHDSGMIVFKLERER-----------P-----AYAVNG-NGLFYVKDR--------------------FIRSYDLRT  349 (1202)
T ss_pred             eeeecCCceEEEEEcccC-----------c-----eEEEcC-CEEEEEccc--------------------eEEeeeccc
Confidence            988777776555433111           1     234554 466666542                    355555433


Q ss_pred             CeEEEee---cC---CCCCceeEEccCCCEEEEEecCC---CeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEE
Q 048181          189 SQVTVLL---RN---LTGPAGVAISVDSSFLLVSEFTG---NRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFW  259 (310)
Q Consensus       189 g~~~~~~---~~---l~~pnGIa~~~dg~~Lyv~d~~~---~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~  259 (310)
                      .+-..+.   ..   ..-|..+.++|..+.++++....   ..++.+.-+.  .+..     + .++...-..  ++-+|
T Consensus       350 ~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~--~~~~-----~-~~~~~k~tG--~~a~f  419 (1202)
T KOG0292|consen  350 QKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDS--DGVS-----D-GKDVKKGTG--EGALF  419 (1202)
T ss_pred             cccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcc--cccC-----C-chhhhcCCC--CceEE
Confidence            2111111   11   13467899999888888874322   2333332211  1111     1 144444444  66788


Q ss_pred             EEEec
Q 048181          260 EAAII  264 (310)
Q Consensus       260 va~~~  264 (310)
                      ||...
T Consensus       420 varNr  424 (1202)
T KOG0292|consen  420 VARNR  424 (1202)
T ss_pred             EEecc
Confidence            87654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=93.69  E-value=5.4  Score=37.88  Aligned_cols=96  Identities=10%  Similarity=0.067  Sum_probs=58.5

Q ss_pred             CceeEEccCCCEEEEEecCCCeEEEEEec---CCC--CCceeeecCC---CCCceeeeCCCCCCcEEEEEecCCCCCCCC
Q 048181          201 PAGVAISVDSSFLLVSEFTGNRTLKYWLR---GPR--ANSFDIINFQ---AKPHNIKRNPGLLQTFWEAAIITRQPAGTP  272 (310)
Q Consensus       201 pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~---~~~--~g~~~~~~l~---g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~  272 (310)
                      -|...|||.+.+ +++-...++|+.|+-+   ...  .++..-.+..   --|---++++  +-+|.+...-.+      
T Consensus       372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P--~~~li~vg~~~r------  442 (498)
T KOG4328|consen  372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP--DYNLIVVGRYPR------  442 (498)
T ss_pred             eeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC--CccEEEEeccCc------
Confidence            488999999988 5676778889988763   111  1111101111   1245566777  777665555443      


Q ss_pred             ceeeEEECCCCc-EEEEEecCCCccccceeEEEecC
Q 048181          273 VPIGQRISAFGA-VLDTISFEAQYSTTPISEVQPFG  307 (310)
Q Consensus       273 ~~~v~~~~~~G~-~~~~~~~p~~~~~~~~t~~~~~~  307 (310)
                        .+-.||++|+ .+..+++|....++.|-+.-+++
T Consensus       443 --~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~  476 (498)
T KOG4328|consen  443 --PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR  476 (498)
T ss_pred             --ceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence              5888998865 58999999764444444443333

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=93.47  E-value=1.5  Score=39.66  Aligned_cols=142  Identities=12%  Similarity=0.214  Sum_probs=77.4

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEE
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIA  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVa  111 (310)
                      -...+.|.|...++.++..++.|--++-....  +-+.        .         + .....-..|.++ +.|. |.|.
T Consensus       174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K--------~---------~-qd~~~vrsiSfH-PsGefllvg  234 (430)
T KOG0640|consen  174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFK--------V---------F-QDTEPVRSISFH-PSGEFLLVG  234 (430)
T ss_pred             cccceeecchhheEEeccCCCeEEEEecccHHHHHHHH--------H---------h-hccceeeeEeec-CCCceEEEe
Confidence            34567888887877777777777666543211  0010        0         0 111123478887 4554 4443


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      ....-+..+|..+-+.- +....+.+.-...+.+..++ +|++|+|-+.                 +|.+-.+|.-+++.
T Consensus       235 TdHp~~rlYdv~T~Qcf-vsanPd~qht~ai~~V~Ys~-t~~lYvTaSk-----------------DG~IklwDGVS~rC  295 (430)
T KOG0640|consen  235 TDHPTLRLYDVNTYQCF-VSANPDDQHTGAITQVRYSS-TGSLYVTASK-----------------DGAIKLWDGVSNRC  295 (430)
T ss_pred             cCCCceeEEeccceeEe-eecCcccccccceeEEEecC-CccEEEEecc-----------------CCcEEeeccccHHH
Confidence            22223666777664332 22233444455678999999 6999999764                 36666666433322


Q ss_pred             EEee---cCCCCCceeEEccCCCEEE
Q 048181          192 TVLL---RNLTGPAGVAISVDSSFLL  214 (310)
Q Consensus       192 ~~~~---~~l~~pnGIa~~~dg~~Ly  214 (310)
                      ..-+   .+-..-....|+.+|++++
T Consensus       296 v~t~~~AH~gsevcSa~Ftkn~kyiL  321 (430)
T KOG0640|consen  296 VRTIGNAHGGSEVCSAVFTKNGKYIL  321 (430)
T ss_pred             HHHHHhhcCCceeeeEEEccCCeEEe
Confidence            1111   1122235667888887543

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.39  E-value=9.5  Score=38.24  Aligned_cols=38  Identities=16%  Similarity=0.104  Sum_probs=26.1

Q ss_pred             eecCCCC-CceeEEccCCCEEEEEe-cCCCeEEEEEecCCC
Q 048181          194 LLRNLTG-PAGVAISVDSSFLLVSE-FTGNRTLKYWLRGPR  232 (310)
Q Consensus       194 ~~~~l~~-pnGIa~~~dg~~Lyv~d-~~~~~I~~~~~~~~~  232 (310)
                      +...+.. +..++|..++. |+|.. .....++++.++|..
T Consensus       491 l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        491 VGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             eecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence            3344544 58899999887 55643 345679999999763

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.39  E-value=6.6  Score=36.43  Aligned_cols=93  Identities=18%  Similarity=0.264  Sum_probs=56.9

Q ss_pred             CeEEEEeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          106 RQLYIADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       106 g~LyVad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      +-|++.+..  ..|+.++.+++..+.+..   | .+.--.-+.+|++++.|||+-....             ...-.||+
T Consensus       249 ~~l~~s~~~G~~hly~~~~~~~~~~~lT~---G-~~~V~~i~~~d~~~~~iyf~a~~~~-------------p~~r~lY~  311 (353)
T PF00930_consen  249 EFLWISERDGYRHLYLYDLDGGKPRQLTS---G-DWEVTSILGWDEDNNRIYFTANGDN-------------PGERHLYR  311 (353)
T ss_dssp             EEEEEEETTSSEEEEEEETTSSEEEESS----S-SS-EEEEEEEECTSSEEEEEESSGG-------------TTSBEEEE
T ss_pred             EEEEEEEcCCCcEEEEEcccccceecccc---C-ceeecccceEcCCCCEEEEEecCCC-------------CCceEEEE
Confidence            345555522  249999999887665432   1 1222224678887789999865421             12236899


Q ss_pred             EcCC-CCeEEEeecCCCCCc-eeEEccCCCEEEEE
Q 048181          184 YNPR-SSQVTVLLRNLTGPA-GVAISVDSSFLLVS  216 (310)
Q Consensus       184 ~d~~-~g~~~~~~~~l~~pn-GIa~~~dg~~Lyv~  216 (310)
                      ++.+ +++++.+.... ..+ .+.|||||+++..+
T Consensus       312 v~~~~~~~~~~LT~~~-~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  312 VSLDSGGEPKCLTCED-GDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EETTETTEEEESSTTS-STTEEEEE-TTSSEEEEE
T ss_pred             EEeCCCCCeEeccCCC-CCceEEEECCCCCEEEEE
Confidence            9888 77776665433 344 89999999965444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.32  E-value=6.1  Score=35.77  Aligned_cols=103  Identities=23%  Similarity=0.269  Sum_probs=59.7

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          104 ATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       104 ~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      .+...|+||...|+..+|..+-..-++...++-.  ...-++.++  +...||+|...                 | ++.
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--gyaygv~vs--Gn~aYVadldd-----------------g-fLi  152 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--GYAYGVYVS--GNYAYVADLDD-----------------G-FLI  152 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcceeccccCC--ceEEEEEec--CCEEEEeeccC-----------------c-EEE
Confidence            4788999999999888886542211111222111  234467777  57899999643                 2 444


Q ss_pred             EcCCCCeEEEeecCCCCCce----eEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181          184 YNPRSSQVTVLLRNLTGPAG----VAISVDSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       184 ~d~~~g~~~~~~~~l~~pnG----Ia~~~dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      +|-.+-.--++......|.|    +++|  |++-|++....+ +..++++.+
T Consensus       153 vdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp  201 (370)
T COG5276         153 VDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNP  201 (370)
T ss_pred             EECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCC-eEEEEccCC
Confidence            44322222223444445544    6666  678899876544 556777754

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.10  E-value=10  Score=37.83  Aligned_cols=157  Identities=13%  Similarity=0.131  Sum_probs=89.1

Q ss_pred             eeEEEecCCCeEEEEeCCC------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181           97 FGLALHYATRQLYIADAYS------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK  170 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~  170 (310)
                      .|++.  -+|.||+.-+..      .+-++|+.+.+.+.++....   ...--++++-  +|.||+.-.....       
T Consensus       374 ~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~--~g~iYi~GG~~~~-------  439 (571)
T KOG4441|consen  374 FGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVL--GGKLYIIGGGDGS-------  439 (571)
T ss_pred             ceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEE--CCEEEEEcCcCCC-------
Confidence            36666  389999975432      38899999877665543221   1122355555  5999998653210       


Q ss_pred             eeeecCCCceEEEEcCCCCeEEEeecCC--CCCceeEEccCCCEEEEEecCC-----CeEEEEEecCCCCCceee-ecC-
Q 048181          171 LNITNDSTGRLLSYNPRSSQVTVLLRNL--TGPAGVAISVDSSFLLVSEFTG-----NRTLKYWLRGPRANSFDI-INF-  241 (310)
Q Consensus       171 ~~~~~~~~G~l~~~d~~~g~~~~~~~~l--~~pnGIa~~~dg~~Lyv~d~~~-----~~I~~~~~~~~~~g~~~~-~~l-  241 (310)
                          ...-.++.+|||.+++.+....-.  ..-.|++.-.  ..||+.-...     ..|.+|++..   ..... ..+ 
T Consensus       440 ----~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~--~~iYvvGG~~~~~~~~~VE~ydp~~---~~W~~v~~m~  510 (571)
T KOG4441|consen  440 ----SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN--GKIYVVGGFDGTSALSSVERYDPET---NQWTMVAPMT  510 (571)
T ss_pred             ----ccccceEEEEcCCCCceeecCCcccccccceEEEEC--CEEEEECCccCCCccceEEEEcCCC---CceeEcccCc
Confidence                002257999999988776654321  1224566553  3599864432     3477887653   23333 222 


Q ss_pred             -CCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181          242 -QAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       242 -~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                       +...-|++...   |.+|+......+   .....+-.+||+
T Consensus       511 ~~rs~~g~~~~~---~~ly~vGG~~~~---~~l~~ve~ydp~  546 (571)
T KOG4441|consen  511 SPRSAVGVVVLG---GKLYAVGGFDGN---NNLNTVECYDPE  546 (571)
T ss_pred             cccccccEEEEC---CEEEEEecccCc---cccceeEEcCCC
Confidence             22345566664   678876543221   123457777875

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=92.93  E-value=6.5  Score=35.80  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=31.8

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecC
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTP   74 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~   74 (310)
                      ......+|..+++|+++++.-....|++|++..+...+...++
T Consensus       142 D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~  184 (299)
T PF14269_consen  142 DYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK  184 (299)
T ss_pred             CccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence            3445667888889997777777899999998766656655444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=92.70  E-value=1.1  Score=42.82  Aligned_cols=102  Identities=17%  Similarity=0.078  Sum_probs=59.9

Q ss_pred             ceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC--eEEEEEecCCCCCceeeecCCCCCceeeeCCCCCC
Q 048181          179 GRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN--RTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQ  256 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG  256 (310)
                      .++|+++.++++...+..--..--..+|+|||++|.++...++  .|+.+++++..  ..++.+..+.-..=.+.+  ||
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~sp--dG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSP--DG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCC--CC
Confidence            5789999888776666553333446789999999988877554  68888887643  222222222111223455  66


Q ss_pred             c--EEEEEecCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181          257 T--FWEAAIITRQPAGTPVPIGQRISAFGAVLDTISF  291 (310)
Q Consensus       257 ~--l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~  291 (310)
                      .  +|+++..++       +.+.+++++|.-...+..
T Consensus       294 ~~ivf~Sdr~G~-------p~I~~~~~~g~~~~riT~  323 (425)
T COG0823         294 SKIVFTSDRGGR-------PQIYLYDLEGSQVTRLTF  323 (425)
T ss_pred             CEEEEEeCCCCC-------cceEEECCCCCceeEeec
Confidence            4  345555543       456666666554444433

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=92.60  E-value=4.9  Score=35.72  Aligned_cols=99  Identities=22%  Similarity=0.237  Sum_probs=62.8

Q ss_pred             hhhhhhhcCCcee---eeecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccC
Q 048181            6 SLFVFVFSLPRMV---FSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCD   82 (310)
Q Consensus         6 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~   82 (310)
                      +.+|++|=++..-   -++.++.+|+-|.  ..+....|++-+..+++...+|.|.+++...+.+.+...          
T Consensus       119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~----------  186 (327)
T KOG0643|consen  119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD----------  186 (327)
T ss_pred             ceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEcccCceeeech----------
Confidence            3456666664322   2444566676665  678899999999989999999999999988654433210          


Q ss_pred             CCccccCCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCC
Q 048181           83 GTTNLDLGPICRRTFGLALHYATRQLYIADAYS-GLLVVGPNG  124 (310)
Q Consensus        83 g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~  124 (310)
                             ......-+.|.+. ++...||+.... .-..+|..+
T Consensus       187 -------~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  187 -------EEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             -------hhhcccccccccc-CCcceEEecccCccceeeeccc
Confidence                   0112244567775 788888875442 234455444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.58  E-value=3.7  Score=39.14  Aligned_cols=143  Identities=10%  Similarity=0.055  Sum_probs=78.9

Q ss_pred             eeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181           97 FGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      .++.+ ..+|+|+.|-...| |..+|.++.   .+...+.+.. ...+-+.+.++++.++++-+..              
T Consensus        72 ~s~~f-R~DG~LlaaGD~sG~V~vfD~k~r---~iLR~~~ah~-apv~~~~f~~~d~t~l~s~sDd--------------  132 (487)
T KOG0310|consen   72 YSVDF-RSDGRLLAAGDESGHVKVFDMKSR---VILRQLYAHQ-APVHVTKFSPQDNTMLVSGSDD--------------  132 (487)
T ss_pred             eEEEe-ecCCeEEEccCCcCcEEEeccccH---HHHHHHhhcc-CceeEEEecccCCeEEEecCCC--------------
Confidence            35667 47999998744445 666775441   1111222111 1124456777666776664432              


Q ss_pred             CCCceEEEEcCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCC
Q 048181          176 DSTGRLLSYNPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPG  253 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~  253 (310)
                         +.+-.+|..+..++.-+ +.-.+-...+++|...+++++-...+.|.-|+.........++ .+.|  -+.+..=+ 
T Consensus       133 ---~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~p--Ve~vl~lp-  206 (487)
T KOG0310|consen  133 ---KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCP--VESVLALP-  206 (487)
T ss_pred             ---ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCc--eeeEEEcC-
Confidence               22333444444432111 2223556788999888999999999999999876432222233 3333  24444444 


Q ss_pred             CCCcEEEEEecC
Q 048181          254 LLQTFWEAAIIT  265 (310)
Q Consensus       254 ~dG~l~va~~~~  265 (310)
                       .|.+.+++.++
T Consensus       207 -sgs~iasAgGn  217 (487)
T KOG0310|consen  207 -SGSLIASAGGN  217 (487)
T ss_pred             -CCCEEEEcCCC
Confidence             56666666554

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=92.57  E-value=3.9  Score=35.57  Aligned_cols=160  Identities=16%  Similarity=0.112  Sum_probs=73.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCC-ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ..-.-|+..|+|.+|.+.  ++.+++..+.. ....+....    .....|.        -.+=..|.+| .+|-||...
T Consensus        34 ~~~~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~~~~~~~~----~~Ig~g~--------W~~F~~i~~d-~~G~LYaV~   98 (229)
T PF14517_consen   34 NNFRDIAAGPNGRLYAIR--NDGLYRGSPSSSGGNTWDSGS----KQIGDGG--------WNSFKFIFFD-PTGVLYAVT   98 (229)
T ss_dssp             TT-SEEEE-TTS-EEEEE--TTEEEEES---STT--HHHH-----EEEE-S---------GGG-SEEEE--TTS-EEEEE
T ss_pred             cccceEEEcCCceEEEEE--CCceEEecCCccCcccccccC----cccccCc--------ccceeEEEec-CCccEEEec
Confidence            445568888999988776  55888873220 011110000    0000000        0122368887 789999776


Q ss_pred             CCCcEEEEeCCCCeEEEee----ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE-cCC
Q 048181          113 AYSGLLVVGPNGRLATQLA----TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY-NPR  187 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~----~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~-d~~  187 (310)
                      ....+++..+.......+.    ..+.+...+..+-+..++ +|.||.-++                  +|++++. .|.
T Consensus        99 ~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~-~GvLY~i~~------------------dg~~~~~~~p~  159 (229)
T PF14517_consen   99 PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGP-NGVLYAITP------------------DGRLYRRYRPD  159 (229)
T ss_dssp             TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-T-TS-EEEEET------------------TE-EEEE---S
T ss_pred             cccceeeccCCCccCcchhhccceecccCCCccceEEEeCC-CccEEEEcC------------------CCceEEeCCCC
Confidence            6545777765332212221    111112334455677888 488887553                  4567776 332


Q ss_pred             CC-------eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          188 SS-------QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       188 ~g-------~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      .+       ...+...+...+--|.++|+|. ||.+ ..++.|+|+...
T Consensus       160 ~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~~p  206 (229)
T PF14517_consen  160 GGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGRPP  206 (229)
T ss_dssp             STT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES--
T ss_pred             CCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccCCc
Confidence            21       1111223334567899999986 7877 568889887543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=92.39  E-value=7.4  Score=34.37  Aligned_cols=107  Identities=8%  Similarity=0.017  Sum_probs=66.5

Q ss_pred             CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181           94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      ..+..+.+. .+|+++....+.+|.-.|+++-..   .+.+.- | ...+...+.|+ -.+||+..              
T Consensus       185 s~VtSlEvs-~dG~ilTia~gssV~Fwdaksf~~---lKs~k~-P-~nV~SASL~P~-k~~fVaGg--------------  243 (334)
T KOG0278|consen  185 SPVTSLEVS-QDGRILTIAYGSSVKFWDAKSFGL---LKSYKM-P-CNVESASLHPK-KEFFVAGG--------------  243 (334)
T ss_pred             CCCcceeec-cCCCEEEEecCceeEEeccccccc---eeeccC-c-cccccccccCC-CceEEecC--------------
Confidence            345678886 789887766666788788775221   122211 1 11234557774 67888743              


Q ss_pred             ecCCCceEEEEcCCCCeEEEe-ecCCCCC-ceeEEccCCCEEEEEecCCCeEEE
Q 048181          174 TNDSTGRLLSYNPRSSQVTVL-LRNLTGP-AGVAISVDSSFLLVSEFTGNRTLK  225 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~-~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~  225 (310)
                         .++.+|+||=.+|+-... ..+-..| -.+-|+|||. +|.+-+..+.|+-
T Consensus       244 ---ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirl  293 (334)
T KOG0278|consen  244 ---EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRL  293 (334)
T ss_pred             ---cceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEE
Confidence               246789998877753322 1222233 5899999997 8998887776543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=92.14  E-value=6.8  Score=37.07  Aligned_cols=106  Identities=11%  Similarity=0.072  Sum_probs=60.9

Q ss_pred             eeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181           97 FGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      ..|+|. .+|.-+++....+ |..+|+..-+  -+ ..+.-......|.+.+|. .|...+.-..               
T Consensus       393 k~i~Fs-ENGY~Lat~add~~V~lwDLRKl~--n~-kt~~l~~~~~v~s~~fD~-SGt~L~~~g~---------------  452 (506)
T KOG0289|consen  393 KAISFS-ENGYWLATAADDGSVKLWDLRKLK--NF-KTIQLDEKKEVNSLSFDQ-SGTYLGIAGS---------------  452 (506)
T ss_pred             eEEEec-cCceEEEEEecCCeEEEEEehhhc--cc-ceeeccccccceeEEEcC-CCCeEEeecc---------------
Confidence            478885 6776666555545 8888865321  11 111111223468899998 5766554321               


Q ss_pred             CCCceEEEEcCCCCeEEE---eecCCCCCceeEEccCCCEEEEEecCCCeEEEE
Q 048181          176 DSTGRLLSYNPRSSQVTV---LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKY  226 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~---~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~  226 (310)
                        +=+||.++..+...+.   +.+.....+|+.|...-  -|++.+...++.++
T Consensus       453 --~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a--q~l~s~smd~~l~~  502 (506)
T KOG0289|consen  453 --DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA--QYLASTSMDAILRL  502 (506)
T ss_pred             --eeEEEEEecccccceeeehhhhcccccceeeecccc--eEEeeccchhheEE
Confidence              1257777755443332   23333467999998764  56677777776554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.05  E-value=5.7  Score=37.33  Aligned_cols=111  Identities=14%  Similarity=-0.020  Sum_probs=59.4

Q ss_pred             CceEEEEcCCCCeEEEeecCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCC-C-C-ceeeeCCC
Q 048181          178 TGRLLSYNPRSSQVTVLLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQA-K-P-HNIKRNPG  253 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g-~-P-dgl~~d~~  253 (310)
                      +-.+|.+|..+++++.+.++- ....|..++++.+.||+.. ...+|++++++..+  +..+-.+|. . . ....+++ 
T Consensus        59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e--~~~vy~~p~~~~g~gt~v~n~-  134 (386)
T PF14583_consen   59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLE--ERVVYEVPDDWKGYGTWVANS-  134 (386)
T ss_dssp             S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT----EEEEEE--TTEEEEEEEEE-T-
T ss_pred             CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCc--EEEEEECCcccccccceeeCC-
Confidence            457999999999998887753 2344888999999886644 34689999997532  222233331 1 1 2333577 


Q ss_pred             CCCcEEEEEecCCCCC---C-----------CCceeeEEECC-CCcEEEEEecCC
Q 048181          254 LLQTFWEAAIITRQPA---G-----------TPVPIGQRISA-FGAVLDTISFEA  293 (310)
Q Consensus       254 ~dG~l~va~~~~~~~~---~-----------~~~~~v~~~~~-~G~~~~~~~~p~  293 (310)
                       |+..+++....+.-.   +           ..+.+++++|- .|++-.+++...
T Consensus       135 -d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~  188 (386)
T PF14583_consen  135 -DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD  188 (386)
T ss_dssp             -TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred             -CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence             899988876654211   1           24566788884 566655555443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.00  E-value=1.8  Score=40.14  Aligned_cols=89  Identities=13%  Similarity=0.210  Sum_probs=57.9

Q ss_pred             ecCCCceEEEEcCCCCeEEEeec--CCCC-CceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeee
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLR--NLTG-PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKR  250 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~--~l~~-pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~  250 (310)
                      +....+.|-.||+..++ +++..  -... -..+++.|+|+++|++++ .+.+..||+.+.+.....+.++.|.+..|.+
T Consensus       221 t~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g~~~kg~tGsirsih~  298 (412)
T KOG3881|consen  221 TITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLGCGLKGITGSIRSIHC  298 (412)
T ss_pred             EEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeeccccCCccCCcceEEE
Confidence            34456788889987543 33322  1111 246788899999999886 4567888886532211112567788999999


Q ss_pred             CCCCCCcEEEEEecCC
Q 048181          251 NPGLLQTFWEAAIITR  266 (310)
Q Consensus       251 d~~~dG~l~va~~~~~  266 (310)
                      .+  .+.+...+.--|
T Consensus       299 hp--~~~~las~GLDR  312 (412)
T KOG3881|consen  299 HP--THPVLASCGLDR  312 (412)
T ss_pred             cC--CCceEEeeccce
Confidence            98  667777666654

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=91.99  E-value=2.3  Score=37.01  Aligned_cols=140  Identities=15%  Similarity=0.132  Sum_probs=65.4

Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEee---ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181           99 LALHYATRQLYIADAYSGLLVVGPNGRLATQLA---TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        99 la~d~~~g~LyVad~~~gi~~id~~~~~~~~~~---~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      |+.. ++|+||+.... .+++..+.+-......   ..+.......-..|.+++ +|.||.-+.                
T Consensus        39 i~~~-P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~-~G~LYaV~~----------------   99 (229)
T PF14517_consen   39 IAAG-PNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDP-TGVLYAVTP----------------   99 (229)
T ss_dssp             EEE--TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-T-TS-EEEEET----------------
T ss_pred             EEEc-CCceEEEEECC-ceEEecCCccCcccccccCcccccCcccceeEEEecC-CccEEEecc----------------
Confidence            5665 78999988744 6777732210001111   011111133445899999 599996443                


Q ss_pred             CCCceEEEEcCCCC--------eEEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEEE-EecCCCCCce----ee--e
Q 048181          176 DSTGRLLSYNPRSS--------QVTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKY-WLRGPRANSF----DI--I  239 (310)
Q Consensus       176 ~~~G~l~~~d~~~g--------~~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~-~~~~~~~g~~----~~--~  239 (310)
                        +|.|||..+.+.        ..+.+ ..+....+-|-++++|- ||..+. .+++++. .+++. ....    .+  .
T Consensus       100 --~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~-dg~~~~~~~p~~~-~~~W~~~s~~v~~  174 (229)
T PF14517_consen  100 --DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITP-DGRLYRRYRPDGG-SDRWLSGSGLVGG  174 (229)
T ss_dssp             --T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET-TE-EEEE---SST-T--HHHH-EEEES
T ss_pred             --ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcC-CCceEEeCCCCCC-CCccccccceecc
Confidence              467777764321        12233 34455567888889985 888874 4477776 43321 1111    11  1


Q ss_pred             cCCCCCceeeeCCCCCCcEEEEEec
Q 048181          240 NFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       240 ~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ..-..+..|...+  +|+||.....
T Consensus       175 ~gw~~~~~i~~~~--~g~L~~V~~~  197 (229)
T PF14517_consen  175 GGWDSFHFIFFSP--DGNLWAVKSN  197 (229)
T ss_dssp             SSGGGEEEEEE-T--TS-EEEE-ET
T ss_pred             CCcccceEEeeCC--CCcEEEEecC
Confidence            1112466788888  8888877443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.95  E-value=10  Score=35.10  Aligned_cols=141  Identities=13%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             eEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccc-eEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181           98 GLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDG-LDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pnd-vavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      .+.+  ...||.|+-... |+.+|.++-++  + ..++.-+ ..|++ .|.++..++-|++=++.              .
T Consensus        92 ~Vrm--Nr~RLvV~Lee~-IyIydI~~Mkl--L-hTI~t~~-~n~~gl~AlS~n~~n~ylAyp~s--------------~  150 (391)
T KOG2110|consen   92 AVRM--NRKRLVVCLEES-IYIYDIKDMKL--L-HTIETTP-PNPKGLCALSPNNANCYLAYPGS--------------T  150 (391)
T ss_pred             EEEE--ccceEEEEEccc-EEEEeccccee--e-hhhhccC-CCccceEeeccCCCCceEEecCC--------------C
Confidence            3444  578898886554 99999887443  1 2222111 12232 34555445556654322              2


Q ss_pred             CCceEEEEcCCCCeEEEeecCC-CCCceeEEccCCCEEEEEecCCCeEEEE-EecCCCCCce--ee-ec-CCCCCceeee
Q 048181          177 STGRLLSYNPRSSQVTVLLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKY-WLRGPRANSF--DI-IN-FQAKPHNIKR  250 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~-~~~~~~~g~~--~~-~~-l~g~Pdgl~~  250 (310)
                      ..|.|+.||..+-+....+.-- .--..|||++||. ++.+-+.+++|.|+ .+..   |..  ++ -+ .+-.---|++
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~---G~kl~eFRRG~~~~~IySL~F  226 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPE---GQKLYEFRRGTYPVSIYSLSF  226 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCC---ccEeeeeeCCceeeEEEEEEE
Confidence            3588999987654433333211 1236899999997 77888888887665 4421   221  22 11 1212234788


Q ss_pred             CCCCCCcEEEEEecC
Q 048181          251 NPGLLQTFWEAAIIT  265 (310)
Q Consensus       251 d~~~dG~l~va~~~~  265 (310)
                      ++  ++.+..+....
T Consensus       227 s~--ds~~L~~sS~T  239 (391)
T KOG2110|consen  227 SP--DSQFLAASSNT  239 (391)
T ss_pred             CC--CCCeEEEecCC
Confidence            88  88866665544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=91.38  E-value=8.3  Score=36.87  Aligned_cols=159  Identities=11%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             EEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCeEEEEECC--Cc-eEEeeeecCCCCccccCCCccccCCCCCCce-eeE
Q 048181           25 TKILFPPKAFGGESIAFEP-VGGAFYTGVADGRILKYQAP--DG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGL   99 (310)
Q Consensus        25 ~~~~~~~~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~--g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gl   99 (310)
                      -...+.|--.+...+-|-| .+.|+.+...+++|.-++.-  ++ +++|.                     .-..| ..+
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~---------------------gH~k~Vrd~  264 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK---------------------GHRKPVRDA  264 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh---------------------cchhhhhhh
Confidence            3345555444555555666 68888888888888776532  22 22221                     01112 245


Q ss_pred             EEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          100 ALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       100 a~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      ++. ..|+=|.+....+ |-..|.++|+...-...  +   .-|..+...|++-++++....                 +
T Consensus       265 ~~s-~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~---~~~~cvkf~pd~~n~fl~G~s-----------------d  321 (503)
T KOG0282|consen  265 SFN-NCGTSFLSASFDRFLKLWDTETGQVLSRFHL--D---KVPTCVKFHPDNQNIFLVGGS-----------------D  321 (503)
T ss_pred             hcc-ccCCeeeeeecceeeeeeccccceEEEEEec--C---CCceeeecCCCCCcEEEEecC-----------------C
Confidence            664 5666555544444 66678888875432221  1   246788899963377776543                 5


Q ss_pred             ceEEEEcCCCCeEEE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181          179 GRLLSYNPRSSQVTV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL  228 (310)
Q Consensus       179 G~l~~~d~~~g~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~  228 (310)
                      ++|..+|..++++.. ....+..-|-|.|-++|+ =|++.+....++.++.
T Consensus       322 ~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~  371 (503)
T KOG0282|consen  322 KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR-RFISSSDDKSVRIWEN  371 (503)
T ss_pred             CcEEEEeccchHHHHHHHhhhhheeeeEEccCCc-eEeeeccCccEEEEEc
Confidence            889999988876422 123566779999999987 4666665555554443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.00  E-value=12  Score=34.10  Aligned_cols=194  Identities=14%  Similarity=0.205  Sum_probs=85.6

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      +=+++++|-. ....+|+|..+.+-|++.. .+.|++=...|+ +.......               ..+...+-..+.+
T Consensus         7 ~W~~v~l~t~-~~l~dV~F~d~~~G~~VG~-~g~il~T~DGG~tW~~~~~~~---------------~~~~~~~l~~I~f   69 (302)
T PF14870_consen    7 SWQQVSLPTD-KPLLDVAFVDPNHGWAVGA-YGTILKTTDGGKTWQPVSLDL---------------DNPFDYHLNSISF   69 (302)
T ss_dssp             -EEEEE-S-S-S-EEEEEESSSS-EEEEET-TTEEEEESSTTSS-EE--------------------S-----EEEEEEE
T ss_pred             CcEEeecCCC-CceEEEEEecCCEEEEEec-CCEEEEECCCCccccccccCC---------------CccceeeEEEEEe
Confidence            3456666633 3678899986666666664 677877655543 44321100               0011123346666


Q ss_pred             ecCCCeEEEEeCCCcEEEEeCCCCeE-EEee--ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          102 HYATRQLYIADAYSGLLVVGPNGRLA-TQLA--TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       102 d~~~g~LyVad~~~gi~~id~~~~~~-~~~~--~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      +  +...||+-. .+++....++|+. +.+.  ..+++.    +..+.... ++.+++...                  .
T Consensus        70 ~--~~~g~ivG~-~g~ll~T~DgG~tW~~v~l~~~lpgs----~~~i~~l~-~~~~~l~~~------------------~  123 (302)
T PF14870_consen   70 D--GNEGWIVGE-PGLLLHTTDGGKTWERVPLSSKLPGS----PFGITALG-DGSAELAGD------------------R  123 (302)
T ss_dssp             E--TTEEEEEEE-TTEEEEESSTTSS-EE----TT-SS-----EEEEEEEE-TTEEEEEET------------------T
T ss_pred             c--CCceEEEcC-CceEEEecCCCCCcEEeecCCCCCCC----eeEEEEcC-CCcEEEEcC------------------C
Confidence            4  456777633 3455455455543 3321  223332    23344333 245544321                  2


Q ss_pred             ceEEEEcCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCC
Q 048181          179 GRLLSYNPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLL  255 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~d  255 (310)
                      |.||+-.-....-+.+.. ....-+++..++||+++.|  +..+.+++-.-.|..  ..+.  ..-...-..|.+++  +
T Consensus       124 G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vav--s~~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~--~  197 (302)
T PF14870_consen  124 GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAV--SSRGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSP--D  197 (302)
T ss_dssp             --EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEE--ETTSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-T--T
T ss_pred             CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEE--ECcccEEEEecCCCc--cceEEccCccceehhceecC--C
Confidence            556665443233333322 2233467788899974444  456666654433321  1222  11223456788999  9


Q ss_pred             CcEEEEEecC
Q 048181          256 QTFWEAAIIT  265 (310)
Q Consensus       256 G~l~va~~~~  265 (310)
                      |+||+...++
T Consensus       198 ~~lw~~~~Gg  207 (302)
T PF14870_consen  198 GNLWMLARGG  207 (302)
T ss_dssp             S-EEEEETTT
T ss_pred             CCEEEEeCCc
Confidence            9999987654

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=90.63  E-value=0.52  Score=34.50  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=24.1

Q ss_pred             CCCCceeeEEEecCCCeEEEEeCCCc-EEEEeC
Q 048181           91 PICRRTFGLALHYATRQLYIADAYSG-LLVVGP  122 (310)
Q Consensus        91 ~~~~~P~Gla~d~~~g~LyVad~~~g-i~~id~  122 (310)
                      .....|+||++++.+..|||++...+ |..+..
T Consensus        51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            45678999999866789999987643 665543

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=90.46  E-value=12  Score=33.14  Aligned_cols=175  Identities=12%  Similarity=0.121  Sum_probs=93.5

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      +.+.+.+|-...|+--++.  +|.+||--....+|.|++...+.+. ........    ..+.  .........=..+|+
T Consensus        59 ~~~~~~Lp~~~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~----~~n~--~~y~~~~~t~iD~Av  130 (250)
T PF02191_consen   59 SSRTYKLPYPWQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAG----YNNR--FPYYWSGYTDIDFAV  130 (250)
T ss_pred             CceEEEEeceeccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccc----cccc--cceecCCCceEEEEE
Confidence            3444556644556655554  6899999888999999998865432 11110000    0000  001111112236777


Q ss_pred             ecCCCeEEEE---eCCCc---EEEEeCCCCeEEE-eeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181          102 HYATRQLYIA---DAYSG---LLVVGPNGRLATQ-LATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus       102 d~~~g~LyVa---d~~~g---i~~id~~~~~~~~-~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      |  +..|||.   ....+   |-++|+++-.++. +-+...-+  ..-|..-+   .|-||++++...            
T Consensus       131 D--E~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~--~~~naFmv---CGvLY~~~s~~~------------  191 (250)
T PF02191_consen  131 D--ENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKR--SAGNAFMV---CGVLYATDSYDT------------  191 (250)
T ss_pred             c--CCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCch--hhcceeeE---eeEEEEEEECCC------------
Confidence            6  5568875   22233   6688988755543 22333221  12233333   389999997641            


Q ss_pred             cCCCce-EEEEcCCCCeEEEee----cCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181          175 NDSTGR-LLSYNPRSSQVTVLL----RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL  228 (310)
Q Consensus       175 ~~~~G~-l~~~d~~~g~~~~~~----~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~  228 (310)
                        .+.+ -+.||..+++.+.+.    .......-|..+|..+.||+=|.+.  +..|++
T Consensus       192 --~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~--~v~Y~v  246 (250)
T PF02191_consen  192 --RDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGY--QVTYDV  246 (250)
T ss_pred             --CCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEECCe--EEEEEE
Confidence              1123 366776655443221    2233456788899888899876543  444443

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=90.35  E-value=0.66  Score=28.25  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=22.7

Q ss_pred             EEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 048181           26 KILFPPKAFGGESIAFEPVGGAFYTGVADG   55 (310)
Q Consensus        26 ~~~~~~~~~~Pegia~d~~G~l~~~d~~~g   55 (310)
                      ++-.+.....+.+|++|++|++|+++..++
T Consensus         5 ~lG~~~~~~~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen    5 QLGGPGAQDYGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             EeCCCCCceeEEEEEECCCCCEEEEEeecC
Confidence            344454445799999999999999987654

SBBP stands for Seven Bladed Beta Propeller.

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=90.27  E-value=13  Score=33.09  Aligned_cols=152  Identities=17%  Similarity=0.205  Sum_probs=76.9

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeEEEE-eCCC---cE
Q 048181           43 PVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQLYIA-DAYS---GL  117 (310)
Q Consensus        43 ~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~LyVa-d~~~---gi  117 (310)
                      |+..++++...++.++.++.+|++....-          .|+.. ...-.-+.+ .|-++|     |.++ |..+   .+
T Consensus        65 P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~----------~Gk~N-NVDLrygF~LgG~~id-----iaaASdR~~~~i~~  128 (364)
T COG4247          65 PDKSLVITTVKKAGLRVYDLSGKQLQSVN----------PGKYN-NVDLRYGFQLGGQSID-----IAAASDRQNDKIVF  128 (364)
T ss_pred             cCcceEEEeeccCCeEEEecCCCeeeecC----------CCccc-ccccccCcccCCeEEE-----EEecccccCCeEEE
Confidence            45567777777888888888877543211          11100 000001111 122222     2222 2222   26


Q ss_pred             EEEeCCCCeEEEeecc--CCCccccCccceEEe--CCCCeEEE--EcCCCccCccceeEeeeecCCCceEEE---EcCCC
Q 048181          118 LVVGPNGRLATQLATG--AEGQAFHFLDGLDVD--QGTGVVYF--TDASGVYDFRTIVKLNITNDSTGRLLS---YNPRS  188 (310)
Q Consensus       118 ~~id~~~~~~~~~~~~--~~g~~~~~pndvavd--~~~G~lyv--td~~~~~~~~~~~~~~~~~~~~G~l~~---~d~~~  188 (310)
                      ++||++.+.++.+...  ........+-|+++-  +.+|..|+  ++..                  |-+-.   +|..+
T Consensus       129 y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~q------------------G~~~Qy~l~d~gn  190 (364)
T COG4247         129 YKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQ------------------GDIAQYKLIDQGN  190 (364)
T ss_pred             EEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCC------------------CceeEEEEEecCC
Confidence            7889888776665433  111234456677654  33465554  3322                  22222   12223


Q ss_pred             CeEEE-eecCCC---CCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          189 SQVTV-LLRNLT---GPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       189 g~~~~-~~~~l~---~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      |++.. +...+.   ...|+..+.+-..||+++- .-.||+|...
T Consensus       191 Gkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Ae  234 (364)
T COG4247         191 GKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE-DVAIWKYEAE  234 (364)
T ss_pred             ceEcceeeEeeecCCcccceeeccccceEEEeec-cceeeecccC
Confidence            33321 122232   4579999987778999984 5679999765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=89.99  E-value=19  Score=34.80  Aligned_cols=112  Identities=18%  Similarity=0.159  Sum_probs=64.1

Q ss_pred             EEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCC
Q 048181           99 LALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDS  177 (310)
Q Consensus        99 la~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~  177 (310)
                      |.+.+....|++.....| |-.+|..+.....-+...   +-.-..|++++|-+..|+++-..                 
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~---HsAP~~gicfspsne~l~vsVG~-----------------  229 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA---HSAPCRGICFSPSNEALLVSVGY-----------------  229 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhh---ccCCcCcceecCCccceEEEecc-----------------
Confidence            444433444555444555 445665543211111111   11124689999976667666432                 


Q ss_pred             CceEEEEcCCCCeEEEeecCCCCC-ceeEEccCCCEEEEEecCCCeEEEEEecCCC
Q 048181          178 TGRLLSYNPRSSQVTVLLRNLTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLRGPR  232 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~  232 (310)
                      +-+|+.||....+...-+ ....| ..++|+++|. .+++-+.+++|+.||+.+.+
T Consensus       230 Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  230 DKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             cceEEEeeccccccccee-eecCCcceeeecCCce-EEEeecCCceEEEEecccCC
Confidence            357888986543221111 01123 5799999995 67888899999999997643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=89.82  E-value=8.8  Score=38.61  Aligned_cols=131  Identities=9%  Similarity=0.075  Sum_probs=76.7

Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181           99 LALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus        99 la~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      ++++ .+|..++|-.++.|..+|.+++++..  .....+..-...+++++|+ +...++-...                 
T Consensus        25 ~~~s-~nG~~L~t~~~d~Vi~idv~t~~~~l--~s~~~ed~d~ita~~l~~d-~~~L~~a~rs-----------------   83 (775)
T KOG0319|consen   25 VAWS-SNGQHLYTACGDRVIIIDVATGSIAL--PSGSNEDEDEITALALTPD-EEVLVTASRS-----------------   83 (775)
T ss_pred             eeEC-CCCCEEEEecCceEEEEEccCCceec--ccCCccchhhhheeeecCC-ccEEEEeecc-----------------
Confidence            7786 78877777777779999999887641  1122223344678999995 5555543322                 


Q ss_pred             ceEEEEcCCCCeEEEeecC-CCCC-ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCC
Q 048181          179 GRLLSYNPRSSQVTVLLRN-LTGP-AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNP  252 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~~~-l~~p-nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~  252 (310)
                      +-+-.|...++++...+.. -..| -.++++|.| +|..+-...++|.+.++.+.. .+..+.+.||...-+.+.+
T Consensus        84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~-~th~fkG~gGvVssl~F~~  157 (775)
T KOG0319|consen   84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGY-CTHSFKGHGGVVSSLLFHP  157 (775)
T ss_pred             ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCE-EEEEecCCCceEEEEEeCC
Confidence            1122233334543322222 1233 589999988 677777778888888887531 2223355555445555554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=89.58  E-value=5.6  Score=38.37  Aligned_cols=57  Identities=18%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCce---eeeCCCCCC-cEEEEEecC
Q 048181          202 AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHN---IKRNPGLLQ-TFWEAAIIT  265 (310)
Q Consensus       202 nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdg---l~~d~~~dG-~l~va~~~~  265 (310)
                      ..++++||.+ |-++....+-|..+|+...    ..+.++.|.+||   |.+..  || +||.+.-.+
T Consensus       513 yALa~spDak-vcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~--dGtklWTGGlDn  573 (705)
T KOG0639|consen  513 YALAISPDAK-VCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISK--DGTKLWTGGLDN  573 (705)
T ss_pred             hhhhcCCccc-eeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecC--CCceeecCCCcc
Confidence            4788899998 6667777888888888532    222567778887   55677  88 799875443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=89.41  E-value=26  Score=35.44  Aligned_cols=198  Identities=13%  Similarity=0.162  Sum_probs=101.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCC-ceEEeee--ecCCCCccccCC-----------CccccCCCCCCceeeE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAF--TTPTRSKAVCDG-----------TTNLDLGPICRRTFGL   99 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~~~~~~--~~~~~~~~~~~g-----------~~~~~~~~~~~~P~Gl   99 (310)
                      .+-.+..+..++.++..+..+..|+.+...- +.+.+..  ..++.. ..|++           ........-.+--.|.
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-TESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-ccccchhhhhccccCCceeEEeecCCCceeee
Confidence            3445566777888888888888888776542 1111110  000000 00000           0000111112223577


Q ss_pred             EEecCCCeEEEEeCC-C--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181          100 ALHYATRQLYIADAY-S--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus       100 a~d~~~g~LyVad~~-~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      .+. ++.++++.... .  ++|.++..+  ..+.   +.| +..-.-|+.+.|. |.-|.|-++               +
T Consensus       458 sFs-Pd~rfLlScSED~svRLWsl~t~s--~~V~---y~G-H~~PVwdV~F~P~-GyYFatas~---------------D  514 (707)
T KOG0263|consen  458 SFS-PDRRFLLSCSEDSSVRLWSLDTWS--CLVI---YKG-HLAPVWDVQFAPR-GYYFATASH---------------D  514 (707)
T ss_pred             eec-ccccceeeccCCcceeeeecccce--eEEE---ecC-CCcceeeEEecCC-ceEEEecCC---------------C
Confidence            886 56666665433 2  355554332  2221   122 2222357889995 755555432               3


Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCC
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLL  255 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~d  255 (310)
                      ...+||..|- +...+.++..+.--+.+.|+|..++ ..+.+..+.|+..+...  ...+++ .+-.+--.-+++.+  +
T Consensus       515 ~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~--G~~VRiF~GH~~~V~al~~Sp--~  588 (707)
T KOG0263|consen  515 QTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVST--GNSVRIFTGHKGPVTALAFSP--C  588 (707)
T ss_pred             ceeeeeeccc-CCchhhhcccccccceEEECCcccc-cccCCCCceEEEEEcCC--CcEEEEecCCCCceEEEEEcC--C
Confidence            4468888876 3556666777777788999999873 34556666666666542  233444 33222234566666  5


Q ss_pred             CcEEEE
Q 048181          256 QTFWEA  261 (310)
Q Consensus       256 G~l~va  261 (310)
                      |...++
T Consensus       589 Gr~LaS  594 (707)
T KOG0263|consen  589 GRYLAS  594 (707)
T ss_pred             CceEee
Confidence            544333

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.33  E-value=1  Score=42.79  Aligned_cols=64  Identities=16%  Similarity=0.224  Sum_probs=35.5

Q ss_pred             CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC----ceee--------------ecCCCCCceeeeCCCCCC-cEE
Q 048181          199 TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN----SFDI--------------INFQAKPHNIKRNPGLLQ-TFW  259 (310)
Q Consensus       199 ~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g----~~~~--------------~~l~g~Pdgl~~d~~~dG-~l~  259 (310)
                      ..+..|.+|.|.++|||+....+.|+.||++.+..-    ++.+              ..+.|.|.=+.++-  || +||
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~--DGkRlY  389 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL--DGKRLY  389 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T--TSSEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc--CCeEEE
Confidence            356899999999999999999999999999876422    1111              12345688888988  99 699


Q ss_pred             EEEec
Q 048181          260 EAAII  264 (310)
Q Consensus       260 va~~~  264 (310)
                      |+..-
T Consensus       390 vTnSL  394 (461)
T PF05694_consen  390 VTNSL  394 (461)
T ss_dssp             EE---
T ss_pred             EEeec
Confidence            98543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=88.50  E-value=22  Score=33.35  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=27.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCc
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDG   65 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~   65 (310)
                      .-.-+++|.|||..+-++..+|.|.-++|..+
T Consensus       158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             cEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            34568999999998888999999999998854

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=88.38  E-value=19  Score=32.53  Aligned_cols=157  Identities=13%  Similarity=0.127  Sum_probs=85.0

Q ss_pred             CCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           29 FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      +++.-.+-....+-.|+. ++++..+....-++-+.++....+                  ..-.+.-.+|.+.+.+++.
T Consensus       141 l~gHtgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f------------------~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVF------------------HGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ecCccceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEEEe------------------cCCcccEEEEecCCCCCCe
Confidence            454444555566655555 667777777777776544332111                  1122345577775448999


Q ss_pred             EEEeCCCc-EEEEeCCCCe-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          109 YIADAYSG-LLVVGPNGRL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       109 yVad~~~g-i~~id~~~~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      ||+-.-.. ....|...+. .+.+    .|. -.-.|.+.+.| +|.-|.|.+...               .-|+|-+..
T Consensus       202 FvSg~cD~~aklWD~R~~~c~qtF----~gh-esDINsv~ffP-~G~afatGSDD~---------------tcRlyDlRa  260 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSGQCVQTF----EGH-ESDINSVRFFP-SGDAFATGSDDA---------------TCRLYDLRA  260 (343)
T ss_pred             EEecccccceeeeeccCcceeEee----ccc-ccccceEEEcc-CCCeeeecCCCc---------------eeEEEeecC
Confidence            99643222 3334444433 2333    331 23468899999 598888876431               223333322


Q ss_pred             CCCeEEEeec--CCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          187 RSSQVTVLLR--NLTGPAGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       187 ~~g~~~~~~~--~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                      + .++.+...  ....-+.++||..|+.||.. .....+.+.|
T Consensus       261 D-~~~a~ys~~~~~~gitSv~FS~SGRlLfag-y~d~~c~vWD  301 (343)
T KOG0286|consen  261 D-QELAVYSHDSIICGITSVAFSKSGRLLFAG-YDDFTCNVWD  301 (343)
T ss_pred             C-cEEeeeccCcccCCceeEEEcccccEEEee-ecCCceeEee
Confidence            2 23332221  12345899999999866554 4455555554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=88.29  E-value=9.4  Score=39.79  Aligned_cols=105  Identities=7%  Similarity=-0.002  Sum_probs=66.0

Q ss_pred             ccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe-EEEeecCCCCCceeEEccCCCEEEEEecCC
Q 048181          142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-VTVLLRNLTGPAGVAISVDSSFLLVSEFTG  220 (310)
Q Consensus       142 pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~  220 (310)
                      .-|++.+| ++.+.++-+.                 +.++..++..+.+ ++++.+....+-|+.|||-|+ .+.+.+..
T Consensus       132 V~Dv~Wsp-~~~~lvS~s~-----------------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdD  192 (942)
T KOG0973|consen  132 VLDVNWSP-DDSLLVSVSL-----------------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQSDD  192 (942)
T ss_pred             cceeccCC-CccEEEEecc-----------------cceEEEEccccceeeeeeecccccccceEECCccC-eeeeecCC
Confidence            45778888 4887777543                 3678888877654 345556667899999999998 34556666


Q ss_pred             CeEEEEEecCCCCCceee-----ecCCCCC--ceeeeCCCCCCcEEEEEecCCCCC
Q 048181          221 NRTLKYWLRGPRANSFDI-----INFQAKP--HNIKRNPGLLQTFWEAAIITRQPA  269 (310)
Q Consensus       221 ~~I~~~~~~~~~~g~~~~-----~~l~g~P--dgl~~d~~~dG~l~va~~~~~~~~  269 (310)
                      +.|..+..+.  -+....     ...++.+  ..+-..+  ||.+.++-++.+.+.
T Consensus       193 rtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSP--DG~~las~nA~n~~~  244 (942)
T KOG0973|consen  193 RTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSP--DGHHLASPNAVNGGK  244 (942)
T ss_pred             ceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCC--CcCeecchhhccCCc
Confidence            6555554332  122111     2233333  3455677  998888877776554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=88.00  E-value=14  Score=34.74  Aligned_cols=56  Identities=20%  Similarity=0.147  Sum_probs=33.1

Q ss_pred             CceEEEEcCCCCeEEEeecCCCC--CceeEEccCCCEEEEEecCCCeEEEEEecCCCCC
Q 048181          178 TGRLLSYNPRSSQVTVLLRNLTG--PAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN  234 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l~~--pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g  234 (310)
                      ...||.||.++-..-...+++.+  -..|||++||..|+++.+..-+ ..+.+.....|
T Consensus       320 ~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC-S~vtfe~~elg  377 (434)
T KOG1009|consen  320 KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC-SLVTFEPWELG  377 (434)
T ss_pred             cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCce-EEEEEcchhcc
Confidence            45677787654333333455543  3689999999988888765543 22334333344

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=87.99  E-value=25  Score=33.45  Aligned_cols=139  Identities=14%  Similarity=0.201  Sum_probs=74.8

Q ss_pred             eeEEEecCCCeEEEEeCCCcEEEE-eCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181           97 FGLALHYATRQLYIADAYSGLLVV-GPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~gi~~i-d~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      .++..+ ..|.-+++....+-|.+ |..++.. .++...  +.. ..-...+++| +|.|+.|-..              
T Consensus       307 ~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s~-v~~ts~~fHp-DgLifgtgt~--------------  367 (506)
T KOG0289|consen  307 TGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TSD-VEYTSAAFHP-DGLIFGTGTP--------------  367 (506)
T ss_pred             eeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeec--ccc-ceeEEeeEcC-CceEEeccCC--------------
Confidence            477776 45555454344454444 4444432 222221  111 1234678999 5999887643              


Q ss_pred             cCCCceEEEEcCCCCeEEEeecCCC-CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC--CCCceeeeC
Q 048181          175 NDSTGRLLSYNPRSSQVTVLLRNLT-GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ--AKPHNIKRN  251 (310)
Q Consensus       175 ~~~~G~l~~~d~~~g~~~~~~~~l~-~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~--g~Pdgl~~d  251 (310)
                         +|.|-.||.+++....-..+-. --..|+|+.+| +.+++.+..+.|..+|+...  -......++  ....-+.+|
T Consensus       368 ---d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  368 ---DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             ---CceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEc
Confidence               4555556654433111111111 22679999887 67777788888888887532  122111121  124558899


Q ss_pred             CCCCCcEEEEE
Q 048181          252 PGLLQTFWEAA  262 (310)
Q Consensus       252 ~~~dG~l~va~  262 (310)
                      .  .|.+.+..
T Consensus       442 ~--SGt~L~~~  450 (506)
T KOG0289|consen  442 Q--SGTYLGIA  450 (506)
T ss_pred             C--CCCeEEee
Confidence            8  88776665

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=87.95  E-value=21  Score=32.56  Aligned_cols=100  Identities=15%  Similarity=0.089  Sum_probs=55.0

Q ss_pred             CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCC
Q 048181          141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG  220 (310)
Q Consensus       141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~  220 (310)
                      ..||++++| .|.|-.+-.+.                 +.+--+|.-.|+...+..--..|.-+.|+|.|.+.++.  ..
T Consensus       129 ~Vt~lsiHP-S~KLALsVg~D-----------------~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~--~~  188 (362)
T KOG0294|consen  129 QVTDLSIHP-SGKLALSVGGD-----------------QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS--GR  188 (362)
T ss_pred             ccceeEecC-CCceEEEEcCC-----------------ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE--ec
Confidence            379999999 59998775432                 33333333333332222222345569999999966665  45


Q ss_pred             CeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          221 NRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       221 ~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ++|-.|.++..  ........|..+-.+.+..  .+.|.|+...
T Consensus       189 ~~i~i~q~d~A--~v~~~i~~~~r~l~~~~l~--~~~L~vG~d~  228 (362)
T KOG0294|consen  189 NKIDIYQLDNA--SVFREIENPKRILCATFLD--GSELLVGGDN  228 (362)
T ss_pred             cEEEEEecccH--hHhhhhhccccceeeeecC--CceEEEecCC
Confidence            66666655421  1111022233455666666  5666666444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=87.87  E-value=28  Score=33.84  Aligned_cols=37  Identities=22%  Similarity=0.112  Sum_probs=27.7

Q ss_pred             eCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce
Q 048181           28 LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF   66 (310)
Q Consensus        28 ~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~   66 (310)
                      +-+.+ ...-+++|.++|. .+++..+|.|..+++.+..
T Consensus       242 ek~ek-k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~  278 (626)
T KOG2106|consen  242 EKREK-KFVLCVTFLENGD-VITGDSGGNILIWSKGTNR  278 (626)
T ss_pred             ccccc-eEEEEEEEcCCCC-EEeecCCceEEEEeCCCce
Confidence            33444 5677899999999 6677779999999987543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=87.66  E-value=24  Score=32.84  Aligned_cols=107  Identities=20%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             CCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      +.+.--.++++||-+..|.++..++.|-.+|...+.......                  .-...-.|+++....-.||-
T Consensus       149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt------------------Ghi~~vr~vavS~rHpYlFs  210 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT------------------GHIETVRGVAVSKRHPYLFS  210 (460)
T ss_pred             hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec------------------chhheeeeeeecccCceEEE
Confidence            445566789999976655555667777777877554321110                  11224568999645556766


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCC
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDAS  160 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~  160 (310)
                      |-....|-.+|++.++   +...+.| ++...-.+++.| +-++.+|-..
T Consensus       211 ~gedk~VKCwDLe~nk---vIR~YhG-HlS~V~~L~lhP-Tldvl~t~gr  255 (460)
T KOG0285|consen  211 AGEDKQVKCWDLEYNK---VIRHYHG-HLSGVYCLDLHP-TLDVLVTGGR  255 (460)
T ss_pred             ecCCCeeEEEechhhh---hHHHhcc-ccceeEEEeccc-cceeEEecCC
Confidence            6545557778887654   2334444 455666788888 5778887654

>PHA02713 hypothetical protein; Provisional

Probab=87.53  E-value=28  Score=34.59  Aligned_cols=94  Identities=7%  Similarity=0.068  Sum_probs=51.4

Q ss_pred             EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC-CeEEEee
Q 048181          117 LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-SQVTVLL  195 (310)
Q Consensus       117 i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-g~~~~~~  195 (310)
                      +.++|+++++.+.+...... .  ...++++-  +|.||+......  .         ......+.+|||.+ .+.+.+.
T Consensus       434 ve~YDP~td~W~~v~~m~~~-r--~~~~~~~~--~~~IYv~GG~~~--~---------~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        434 VIRYDTVNNIWETLPNFWTG-T--IRPGVVSH--KDDIYVVCDIKD--E---------KNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             EEEECCCCCeEeecCCCCcc-c--ccCcEEEE--CCEEEEEeCCCC--C---------CccceeEEEecCCCCCCeeEcc
Confidence            77899988766554322111 1  12355555  589999753210  0         00113478999997 5665543


Q ss_pred             cCCCC---CceeEEccCCCEEEEEecCCC--eEEEEEec
Q 048181          196 RNLTG---PAGVAISVDSSFLLVSEFTGN--RTLKYWLR  229 (310)
Q Consensus       196 ~~l~~---pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~  229 (310)
                       .++.   -.|++.- +| .||+.--..+  .+-+|++.
T Consensus       498 -~m~~~r~~~~~~~~-~~-~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        498 -TTESRLSALHTILH-DN-TIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             -ccCcccccceeEEE-CC-EEEEEeeecceeehhhcCcc
Confidence             3332   2466665 34 5898643333  45666654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=87.27  E-value=20  Score=35.83  Aligned_cols=110  Identities=19%  Similarity=0.185  Sum_probs=63.9

Q ss_pred             eEEEecCCCeEEEEeCC-------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181           98 GLALHYATRQLYIADAY-------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK  170 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~-------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~  170 (310)
                      |.+.  -+|+||++-+.       ..+..+||.+++.+.++.... +  ..-.++++.  ++.||+--....        
T Consensus       422 gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~--R~~~g~a~~--~~~iYvvGG~~~--------  486 (571)
T KOG4441|consen  422 GVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-R--RSGFGVAVL--NGKIYVVGGFDG--------  486 (571)
T ss_pred             EEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-c--cccceEEEE--CCEEEEECCccC--------
Confidence            5555  48999998542       137889999887655433211 1  122357776  599998754321        


Q ss_pred             eeeecCCCceEEEEcCCCCeEEEeecCCC--CCceeEEccCCCEEEEEecCC-----CeEEEEEe
Q 048181          171 LNITNDSTGRLLSYNPRSSQVTVLLRNLT--GPAGVAISVDSSFLLVSEFTG-----NRTLKYWL  228 (310)
Q Consensus       171 ~~~~~~~~G~l~~~d~~~g~~~~~~~~l~--~pnGIa~~~dg~~Lyv~d~~~-----~~I~~~~~  228 (310)
                          ....-++.+|||.+.+.+.+..-..  ..-|++..  ++.||+.--..     ..|-.|++
T Consensus       487 ----~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp  545 (571)
T KOG4441|consen  487 ----TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP  545 (571)
T ss_pred             ----CCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCC
Confidence                0011248999999888877642211  22345554  34688875432     24555544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.16  E-value=40  Score=34.96  Aligned_cols=69  Identities=13%  Similarity=0.366  Sum_probs=40.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCceEEeeeecCCCC-----ccccCCCccccCCCCCCceeeEEEe----------------c
Q 048181           45 GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRS-----KAVCDGTTNLDLGPICRRTFGLALH----------------Y  103 (310)
Q Consensus        45 G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~P~Gla~d----------------~  103 (310)
                      |+.+|+....++|+.+|...+.+.+........     ...|.               |+++.                .
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cR---------------Gvay~~~p~~~~~~~~~~~p~~  258 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCR---------------GVSYYDAPAAAAGPAAPAAPAD  258 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccc---------------ceEEecCCcccccccccccccc
Confidence            344566667889999998866665554221110     01122               33221                1


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEE
Q 048181          104 ATRQLYIADAYSGLLVVGPNGRLAT  128 (310)
Q Consensus       104 ~~g~LyVad~~~gi~~id~~~~~~~  128 (310)
                      .+++||+......++.+|.++|+..
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~  283 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLC  283 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEE
Confidence            2458888766666888888887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=87.09  E-value=9.8  Score=35.49  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=60.5

Q ss_pred             ceeeEEEecCCCeE-EEEeCCCcEEEEeCCCC-eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           95 RTFGLALHYATRQL-YIADAYSGLLVVGPNGR-LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        95 ~P~Gla~d~~~g~L-yVad~~~gi~~id~~~~-~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      .+.-.... ++++| ++++...+...++.... +...+......  -..|+.+.+..++-.+.++|..            
T Consensus        64 a~~~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--~~~~~ai~~~~~~~sv~v~dka------------  128 (390)
T KOG3914|consen   64 APALVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--PKRPTAISFIREDTSVLVADKA------------  128 (390)
T ss_pred             cccccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--ccCcceeeeeeccceEEEEeec------------
Confidence            34444443 55654 45666655433332221 11112221111  1346667766655666677653            


Q ss_pred             eecCCCceEEEEcC---CCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          173 ITNDSTGRLLSYNP---RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       173 ~~~~~~G~l~~~d~---~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                            |.+|.+|.   ..+..+.....+..--.++++||+++|..+|- ...|+..++.
T Consensus       129 ------gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDR-DEkIRvs~yp  181 (390)
T KOG3914|consen  129 ------GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYP  181 (390)
T ss_pred             ------CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecC-CceEEEEecC
Confidence                  33444442   22555556666777789999999998887775 4445554443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=86.15  E-value=26  Score=36.71  Aligned_cols=103  Identities=10%  Similarity=0.080  Sum_probs=58.4

Q ss_pred             eeEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181           97 FGLALHYATRQLYIADA-YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~-~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      ..++++ +++.+++.-. .+.|..++..+.+..   +...+ +...+-|+.+|| -|+.+.|-+..+             
T Consensus       133 ~Dv~Ws-p~~~~lvS~s~DnsViiwn~~tF~~~---~vl~~-H~s~VKGvs~DP-~Gky~ASqsdDr-------------  193 (942)
T KOG0973|consen  133 LDVNWS-PDDSLLVSVSLDNSVIIWNAKTFELL---KVLRG-HQSLVKGVSWDP-IGKYFASQSDDR-------------  193 (942)
T ss_pred             ceeccC-CCccEEEEecccceEEEEccccceee---eeeec-ccccccceEECC-ccCeeeeecCCc-------------
Confidence            356776 5787777543 345888887764322   22333 234677999999 598777655431             


Q ss_pred             CCCceEEEEcCCCCeEEEeecCC------CCCceeEEccCCCEEEEEecCCC
Q 048181          176 DSTGRLLSYNPRSSQVTVLLRNL------TGPAGVAISVDSSFLLVSEFTGN  221 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~~~l------~~pnGIa~~~dg~~Lyv~d~~~~  221 (310)
                        .=.+|+.+. .+-.+.+...+      .+-.-+.|||||++|-+....++
T Consensus       194 --tikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  194 --TLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             --eEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence              112333221 12222222211      12246789999998887776554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=85.94  E-value=29  Score=32.20  Aligned_cols=42  Identities=17%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCC
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD   64 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g   64 (310)
                      ...+.++-.....-|.+.|+|.+.+++++..+|.++-+.-..
T Consensus       138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~  179 (399)
T KOG0296|consen  138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS  179 (399)
T ss_pred             CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence            334444434456788999999999999999999999887553

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=85.37  E-value=29  Score=31.58  Aligned_cols=145  Identities=17%  Similarity=0.166  Sum_probs=80.3

Q ss_pred             CCCceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181           92 ICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus        92 ~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~  171 (310)
                      ..+...|+.+  ..+..||+|...+++.+|..+-..-+++...... -.-..+++++  +.+-|+++...          
T Consensus       127 t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~-~~d~~~v~IS--Gn~AYvA~~d~----------  191 (370)
T COG5276         127 TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP-GGDTHDVAIS--GNYAYVAWRDG----------  191 (370)
T ss_pred             CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC-CCCceeEEEe--cCeEEEEEeCC----------
Confidence            3355567777  4788999999889888887653333344333221 1123689998  47899987543          


Q ss_pred             eeecCCCceEEEEcCCCCeEEEeecC--C-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCce
Q 048181          172 NITNDSTGRLLSYNPRSSQVTVLLRN--L-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHN  247 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g~~~~~~~~--l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdg  247 (310)
                              .|..+|-.+-.--++.+.  . ....++..+++  +.|+++...+ +..++.+++..-.. + .-.+.-|.+
T Consensus       192 --------GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~eg-vlivd~s~~ssp~~-~gsyet~~p~~  259 (370)
T COG5276         192 --------GLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEG-VLIVDVSGPSSPTV-FGSYETSNPVS  259 (370)
T ss_pred             --------CeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccc-eEEEecCCCCCceE-eeccccCCccc
Confidence                    355554332111112221  1 14456666654  4677776554 45566666532111 1 222334555


Q ss_pred             e---eeCCCCCCcEEEEEecCC
Q 048181          248 I---KRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       248 l---~~d~~~dG~l~va~~~~~  266 (310)
                      +   .+..   ...|++.....
T Consensus       260 ~s~v~Vs~---~~~Yvadga~g  278 (370)
T COG5276         260 ISTVPVSG---EYAYVADGAKG  278 (370)
T ss_pred             ccceeccc---ceeeeeccccC
Confidence            5   4543   46788887754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.08  E-value=26  Score=30.80  Aligned_cols=119  Identities=12%  Similarity=0.134  Sum_probs=68.2

Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE--
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT--  192 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~--  192 (310)
                      ..+..+|..+|++..   .+.| +....|-+++..+ -.+.++.+-                 +-++-.+|-.+...+  
T Consensus        81 k~v~vwDV~TGkv~R---r~rg-H~aqVNtV~fNee-sSVv~Sgsf-----------------D~s~r~wDCRS~s~ePi  138 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDR---RFRG-HLAQVNTVRFNEE-SSVVASGSF-----------------DSSVRLWDCRSRSFEPI  138 (307)
T ss_pred             ceEEEEEcccCeeee---eccc-ccceeeEEEecCc-ceEEEeccc-----------------cceeEEEEcccCCCCcc
Confidence            448888888886532   1222 3445788999874 777776542                 123444454333322  


Q ss_pred             -EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCC-ceeeeCCCCCCcEEEEEec
Q 048181          193 -VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKP-HNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       193 -~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~P-dgl~~d~~~dG~l~va~~~  264 (310)
                       ++.+-...--.|.++   ++.+|+-+..+++++|++..   |+...+.+ |.| .-+.+..  ||+.-.+...
T Consensus       139 Qildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~---G~l~sDy~-g~pit~vs~s~--d~nc~La~~l  203 (307)
T KOG0316|consen  139 QILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK---GTLSSDYF-GHPITSVSFSK--DGNCSLASSL  203 (307)
T ss_pred             chhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec---ceeehhhc-CCcceeEEecC--CCCEEEEeec
Confidence             222222222344444   36889999999999999853   43322223 234 5577888  8976555443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=84.98  E-value=3.7  Score=39.13  Aligned_cols=62  Identities=19%  Similarity=0.298  Sum_probs=30.4

Q ss_pred             cCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC-CeEE----EeecC---------------CC
Q 048181          140 HFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-SQVT----VLLRN---------------LT  199 (310)
Q Consensus       140 ~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-g~~~----~~~~~---------------l~  199 (310)
                      ..+.|+.++.++..|||+....                 |.+.+||... ...+    +.+.+               -.
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~-----------------GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G  374 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLH-----------------GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG  374 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTT-----------------TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred             CceEeEEEccCCCEEEEEcccC-----------------CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence            3468999999888999998753                 5566665321 1111    11111               12


Q ss_pred             CCceeEEccCCCEEEEEec
Q 048181          200 GPAGVAISVDSSFLLVSEF  218 (310)
Q Consensus       200 ~pnGIa~~~dg~~Lyv~d~  218 (310)
                      .|+=|.+|.||+.|||+.+
T Consensus       375 gPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  375 GPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ----EEE-TTSSEEEEE--
T ss_pred             CCCeEEEccCCeEEEEEee
Confidence            5889999999999999976

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=84.70  E-value=34  Score=31.88  Aligned_cols=101  Identities=15%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             ccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCC
Q 048181          142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTG  220 (310)
Q Consensus       142 pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~  220 (310)
                      ..-|...+ +|..++|-+-.                +..+..+|++++.-..+. .++..-.=+-|||||..||.+-.  
T Consensus       198 Vtsmqwn~-dgt~l~tAS~g----------------sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~--  258 (445)
T KOG2139|consen  198 VTSMQWNE-DGTILVTASFG----------------SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC--  258 (445)
T ss_pred             eeEEEEcC-CCCEEeecccC----------------cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc--
Confidence            34556666 36666665422                346888899888766655 34444455689999997665533  


Q ss_pred             CeEEEEE-ecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEEEecC
Q 048181          221 NRTLKYW-LRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEAAIIT  265 (310)
Q Consensus       221 ~~I~~~~-~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va~~~~  265 (310)
                      .++.+++ ...  .-+.+. .-.+|+--+-+.++  +|. |..++.+.
T Consensus       259 davfrlw~e~q--~wt~erw~lgsgrvqtacWsp--cGsfLLf~~sgs  302 (445)
T KOG2139|consen  259 DAVFRLWQENQ--SWTKERWILGSGRVQTACWSP--CGSFLLFACSGS  302 (445)
T ss_pred             cceeeeehhcc--cceecceeccCCceeeeeecC--CCCEEEEEEcCC
Confidence            3344554 221  112222 22345666777888  884 45555543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=84.26  E-value=32  Score=31.19  Aligned_cols=169  Identities=17%  Similarity=0.179  Sum_probs=91.2

Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-EeCCCc
Q 048181           38 SIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADAYSG  116 (310)
Q Consensus        38 gia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~~~g  116 (310)
                      -+.|+|+|..+.++-.++.|+-+...+.-+-+...                 .--.+.-.++.+. ++++..+ |.....
T Consensus        52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-----------------kgHsgAVM~l~~~-~d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-----------------KGHSGAVMELHGM-RDGSHILSCGTDKT  113 (338)
T ss_pred             EEEECCCCCeEeecCCcceEEEEeccccccceeee-----------------ccccceeEeeeec-cCCCEEEEecCCce
Confidence            36788999977777788888888755432222110                 0112233467775 5666555 444566


Q ss_pred             EEEEeCCCCeEEEeeccCCCccccCccceEEe----------CCCCeEEEEcCCCccCccce--------------eEee
Q 048181          117 LLVVGPNGRLATQLATGAEGQAFHFLDGLDVD----------QGTGVVYFTDASGVYDFRTI--------------VKLN  172 (310)
Q Consensus       117 i~~id~~~~~~~~~~~~~~g~~~~~pndvavd----------~~~G~lyvtd~~~~~~~~~~--------------~~~~  172 (310)
                      ++.+|.++|+...-...    .-.+.|-+...          .++|.+=+=|....-..+.+              ..++
T Consensus       114 v~~wD~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv  189 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV  189 (338)
T ss_pred             EEEEecccceeeehhcc----ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence            88999888764221110    01122222221          12455555555422111111              0122


Q ss_pred             eecCCCceEEEEcCCCCeEEEeecCCC-CCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLLRNLT-GPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~-~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      +...=++.|-.+|+..++......+-. --.||.++++|.+ ..+++..+.+.++++.
T Consensus       190 ~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~-llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  190 ISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF-LLSNSMDNTVRVWDVR  246 (338)
T ss_pred             eeccccCceeeeccccCcceEEeecccCceeeEEeccCCCc-cccccccceEEEEEec
Confidence            233334556667775455544444332 3479999999984 5688888888887765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=83.84  E-value=35  Score=33.73  Aligned_cols=110  Identities=14%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             eEEEecCCCeEEEEeCCCcEEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181           98 GLALHYATRQLYIADAYSGLLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~gi~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      .|+++...-.||++-.+..|++++++.|+. .++....     ...|-+-+.+. ..|+.+.                 .
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-----~~lN~v~in~~-hgLla~G-----------------t  194 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-----GELNVVSINEE-HGLLACG-----------------T  194 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEcccccccccccccc-----ccceeeeecCc-cceEEec-----------------c
Confidence            466654455788877777799999886642 2222111     12344555553 2233322                 2


Q ss_pred             CCceEEEEcCCCCeE-EEe-----------ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181          177 STGRLLSYNPRSSQV-TVL-----------LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~-~~~-----------~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      .+|.+-.+|+.+... ..+           .+....+..|.|+.||-+ +-+-+.++.|+.||+...
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyDLRa~  260 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYDLRAS  260 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEEcccC
Confidence            245666666643221 111           122345678999988754 345678899999999643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.69  E-value=15  Score=34.27  Aligned_cols=132  Identities=14%  Similarity=0.087  Sum_probs=73.6

Q ss_pred             eEEEccC--CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeEEEEeCC
Q 048181           38 SIAFEPV--GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQLYIADAY  114 (310)
Q Consensus        38 gia~d~~--G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~LyVad~~  114 (310)
                      ++.|-+.  .+.|.+...-+.++.|++.-+.+.++.               +++   ..+| ..+...+....||+++..
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~---------------fd~---~E~~is~~~l~p~gn~Iy~gn~~  268 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ---------------FDF---LENPISSTGLTPSGNFIYTGNTK  268 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccCcceeE---------------ecc---ccCcceeeeecCCCcEEEEeccc
Confidence            3444433  455666667788888887744443331               111   1122 234555456778999888


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL  194 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~  194 (310)
                      ..+..||..+++.-  ...+.|. -..+.++.++| ++.+..+-.-                 +-.|-.+|.++.+   +
T Consensus       269 g~l~~FD~r~~kl~--g~~~kg~-tGsirsih~hp-~~~~las~GL-----------------DRyvRIhD~ktrk---l  324 (412)
T KOG3881|consen  269 GQLAKFDLRGGKLL--GCGLKGI-TGSIRSIHCHP-THPVLASCGL-----------------DRYVRIHDIKTRK---L  324 (412)
T ss_pred             chhheecccCceee--ccccCCc-cCCcceEEEcC-CCceEEeecc-----------------ceeEEEeecccch---h
Confidence            78999998876542  2222221 23567899998 4666554321                 1124445655422   2


Q ss_pred             ecCC---CCCceeEEccCCC
Q 048181          195 LRNL---TGPAGVAISVDSS  211 (310)
Q Consensus       195 ~~~l---~~pnGIa~~~dg~  211 (310)
                      +...   ..+|+|.+.++-+
T Consensus       325 l~kvYvKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  325 LHKVYVKSRLTFILLRDDVN  344 (412)
T ss_pred             hhhhhhhccccEEEecCCcc
Confidence            2221   3678998876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=82.96  E-value=5.1  Score=38.93  Aligned_cols=60  Identities=8%  Similarity=0.000  Sum_probs=38.7

Q ss_pred             CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          200 GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       200 ~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .+|.++|++||++| .+-+..+.++.|+++...  ...+ ....|.-=.+++.+  ||.+.+.-..
T Consensus       292 ~in~f~FS~DG~~L-A~VSqDGfLRvF~fdt~e--Llg~mkSYFGGLLCvcWSP--DGKyIvtGGE  352 (636)
T KOG2394|consen  292 SINEFAFSPDGKYL-ATVSQDGFLRIFDFDTQE--LLGVMKSYFGGLLCVCWSP--DGKYIVTGGE  352 (636)
T ss_pred             cccceeEcCCCceE-EEEecCceEEEeeccHHH--HHHHHHhhccceEEEEEcC--CccEEEecCC
Confidence            67999999999965 556678889999886421  1111 12223344566777  8877666443

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=82.67  E-value=27  Score=36.45  Aligned_cols=26  Identities=12%  Similarity=0.061  Sum_probs=18.0

Q ss_pred             ceeeEEECCCCcEEEEEecCCCcccc
Q 048181          273 VPIGQRISAFGAVLDTISFEAQYSTT  298 (310)
Q Consensus       273 ~~~v~~~~~~G~~~~~~~~p~~~~~~  298 (310)
                      |-+++.-|+.||++..|..|.|+.+.
T Consensus       530 he~~lvads~gklv~~v~ap~gytfd  555 (912)
T TIGR02171       530 HERLLVADSKGKLVRAVAAPAGYTFD  555 (912)
T ss_pred             eeEEEEecCCCchhhhccCCCCcccc
Confidence            34667777777777777777777543

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=82.43  E-value=35  Score=30.23  Aligned_cols=114  Identities=13%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             eEEEecCCCeEEEEeC-CCcEEEEeCCCCeEE-Eee--cc-CCC------ccccCccceEEeCCCCeEEEEcCCCccCcc
Q 048181           98 GLALHYATRQLYIADA-YSGLLVVGPNGRLAT-QLA--TG-AEG------QAFHFLDGLDVDQGTGVVYFTDASGVYDFR  166 (310)
Q Consensus        98 Gla~d~~~g~LyVad~-~~gi~~id~~~~~~~-~~~--~~-~~g------~~~~~pndvavd~~~G~lyvtd~~~~~~~~  166 (310)
                      |.++-  +|.||.--. ...|.++|+.++.+. ...  .. ..+      .+.+ --|+|+|+  ..||+-=...     
T Consensus        73 G~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t-~iD~AvDE--~GLWvIYat~-----  142 (250)
T PF02191_consen   73 GHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYT-DIDFAVDE--NGLWVIYATE-----  142 (250)
T ss_pred             CeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCc-eEEEEEcC--CCEEEEEecC-----
Confidence            55663  788887443 346999999987654 211  10 110      0111 13788886  3477631110     


Q ss_pred             ceeEeeeecCCCceEEEEcCCCCeEEEeec-CCCCC-ceeEEccCCCEEEEEecCC---CeE-EEEEec
Q 048181          167 TIVKLNITNDSTGRLLSYNPRSSQVTVLLR-NLTGP-AGVAISVDSSFLLVSEFTG---NRT-LKYWLR  229 (310)
Q Consensus       167 ~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~-~l~~p-nGIa~~~dg~~Lyv~d~~~---~~I-~~~~~~  229 (310)
                             +...+=.|-++|+.+.+++..+. .+..+ -|=||---| .||++++..   .+| +.||+.
T Consensus       143 -------~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCG-vLY~~~s~~~~~~~I~yafDt~  203 (250)
T PF02191_consen  143 -------DNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCG-VLYATDSYDTRDTEIFYAFDTY  203 (250)
T ss_pred             -------CCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeEee-EEEEEEECCCCCcEEEEEEECC
Confidence                   00111246788998877765543 33322 244555557 599998865   444 456654

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=81.93  E-value=2.1  Score=26.03  Aligned_cols=20  Identities=5%  Similarity=0.037  Sum_probs=17.4

Q ss_pred             CCceeeeCCCCCCcEEEEEecC
Q 048181          244 KPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      .+.+|++|+  +|++||+-...
T Consensus        14 ~~~~IavD~--~GNiYv~G~T~   33 (38)
T PF06739_consen   14 YGNGIAVDS--NGNIYVTGYTN   33 (38)
T ss_pred             eEEEEEECC--CCCEEEEEeec
Confidence            488999999  99999997654

SBBP stands for Seven Bladed Beta Propeller.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=81.29  E-value=52  Score=31.49  Aligned_cols=73  Identities=12%  Similarity=0.092  Sum_probs=45.7

Q ss_pred             CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec--CCCCCceeEEccCCCEEEEEec
Q 048181          141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR--NLTGPAGVAISVDSSFLLVSEF  218 (310)
Q Consensus       141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~--~l~~pnGIa~~~dg~~Lyv~d~  218 (310)
                      +.|.+++-+ .-+++.+.+..+               .=+||.+...-..++.+.+  -..+-|.|+|+++|+.|++.--
T Consensus       382 Witsla~i~-~sdL~asGS~~G---------------~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  382 WITSLAVIP-GSDLLASGSWSG---------------CVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             ceeeeEecc-cCceEEecCCCC---------------ceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence            567788877 466766655431               1256666543223333221  1236699999999998888866


Q ss_pred             CCCeEEEEEec
Q 048181          219 TGNRTLKYWLR  229 (310)
Q Consensus       219 ~~~~I~~~~~~  229 (310)
                      ..+|+-|.+..
T Consensus       446 kEhRlGRW~~~  456 (479)
T KOG0299|consen  446 KEHRLGRWWCL  456 (479)
T ss_pred             cccccceeeEe
Confidence            67777666543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=80.84  E-value=46  Score=30.56  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=28.5

Q ss_pred             EEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEEC
Q 048181           25 TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQA   62 (310)
Q Consensus        25 ~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~   62 (310)
                      ++|+|. +-..+|+-.+.|||+.++++.-+|-|-.++-
T Consensus       206 r~IKFg-~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny  242 (508)
T KOG0275|consen  206 RSIKFG-QKSHVECARFSPDGQYLVSGSVDGFIEVWNY  242 (508)
T ss_pred             hheecc-cccchhheeeCCCCceEeeccccceeeeehh
Confidence            456666 3468999999999997888877887776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		6e-56
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		1e-54
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		4e-54

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  214 bits (544), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 167/297 (56%), Gaps = 5/297 (1%)
Query: 17  MVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPT 75
           +  S P   +IL    ++   S  F+     FYT V DGR++KY+ P+ GF DFA+ +P 
Sbjct: 2   LALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPY 61
Query: 76  RSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAE 135
            +KA C+ +T+ +  P+C RT+ ++ +    QLYI D Y  L VVG  G  ATQLAT  +
Sbjct: 62  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 121
Query: 136 GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL 195
           G  F +L  + VDQ TG+VYFTD S +YD R + ++  T+D TGRL+ Y+P + + T+LL
Sbjct: 122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181
Query: 196 RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLL 255
           + L  P G  +S DSSF+LV+EF  ++ +KYWL GP+  + +++     P NIKRN    
Sbjct: 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD-- 239
Query: 256 QTFW--EAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
             FW   +  +     G   P G +   FG +L+ I     ++     ++Q   G L
Sbjct: 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL 296

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/288 (37%), Positives = 164/288 (56%), Gaps = 5/288 (1%)
Query: 26  KILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGT 84
           +IL    ++   S  F+     FYT V DGR++KY+ P+ GF DFA+ +P  +KA C+ +
Sbjct: 2   EILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENS 61
Query: 85  TNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDG 144
           T+ +  P+C RT+ ++ +    QLYI D Y  L VVG  G  ATQLAT  +G  F +L  
Sbjct: 62  TDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYA 121
Query: 145 LDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGV 204
           + VDQ TG+VYFTD S +YD R + ++  T+D TGRL+ Y+P + + T+LL+ L  P G 
Sbjct: 122 VTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGA 181
Query: 205 AISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFW--EAA 262
            +S DSSF+LV+EF  ++ +KYWL GP+  + +++     P NIKRN      FW   + 
Sbjct: 182 EVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD--GHFWVSSSE 239
Query: 263 IITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
            +     G   P G +   FG +L+ I     ++     ++Q   G L
Sbjct: 240 ELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL 287

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  208 bits (529), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 109/297 (36%), Positives = 163/297 (54%), Gaps = 5/297 (1%)
Query: 17  MVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPT 75
           +  S P   +IL    ++   S  F+     FYT V DGR+ KY+ P+ GF DFA+ +P 
Sbjct: 2   LALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPY 61
Query: 76  RSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAE 135
            +KA C+ +T+ +  P+C RT+ ++ +    Q YI D Y  L VVG  G  ATQLAT  +
Sbjct: 62  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVD 121
Query: 136 GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL 195
           G  F +L  + VDQ TG+VYFTD S +YD R + ++  T+D TGRL  Y+P + + T+L 
Sbjct: 122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLX 181
Query: 196 RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLL 255
           + L  P G  +S DSSF+LV+EF  ++ +KYWL GP+  + +++     P NIKRN    
Sbjct: 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD-- 239
Query: 256 QTFW--EAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
             FW   +  +     G   P G +   FG +L+ I     ++     ++Q   G L
Sbjct: 240 GHFWVSSSEELDGNXHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL 296

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	7e-70
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	3e-15
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	5e-10
2p4o_A	306	Hypothetical protein; putative lactonase, structur	6e-05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	6e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	1e-04
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	3e-04
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	3e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	6e-04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	8e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  219 bits (558), Expect = 7e-70
 Identities = 111/297 (37%), Positives = 167/297 (56%), Gaps = 5/297 (1%)

Query: 17  MVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPT 75
           +  S P   +IL    ++   S  F+     FYT V DGR++KY+ P+ GF DFA+ +P 
Sbjct: 2   LALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPY 61

Query: 76  RSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAE 135
            +KA C+ +T+ +  P+C RT+ ++ +    QLYI D Y  L VVG  G  ATQLAT  +
Sbjct: 62  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 121

Query: 136 GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL 195
           G  F +L  + VDQ TG+VYFTD S +YD R + ++  T+D TGRL+ Y+P + + T+LL
Sbjct: 122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181

Query: 196 RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLL 255
           + L  P G  +S DSSF+LV+EF  ++ +KYWL GP+  + +++     P NIKRN    
Sbjct: 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNAD-- 239

Query: 256 QTFWEAAIITRQP--AGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL 310
             FW ++         G   P G +   FG +L+ I     ++     ++Q   G L
Sbjct: 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL 296

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 42/221 (19%), Positives = 68/221 (30%), Gaps = 31/221 (14%)

Query: 22  PTFTKILFPPKAFGGESIAFEPVG-------GAFYTGVADGRILKYQAPDGFTDFAFTTP 74
           P FTK+       G E   F+  G            G   G IL+     G        P
Sbjct: 8   PLFTKV--TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKP 64

Query: 75  TRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGA 134
                   G              G        QL++AD   GLLVV  +G         +
Sbjct: 65  --EVNGYGGIPA-----------GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDS 111

Query: 135 EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL 194
           EG+     +    D   G ++ T  +   +           +  G +  +     Q+  +
Sbjct: 112 EGRRMQGCNDCAFDY-EGNLWITAPA--GEVAPADYTRSMQEKFGSIYCFTT-DGQMIQV 167

Query: 195 LRNLTGPAGVAISVDSS----FLLVSEFTGNRTLKYWLRGP 231
                 P G+A+   +      L+V+E    +   Y ++GP
Sbjct: 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP 208

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score = 58.6 bits (141), Expect = 5e-10
 Identities = 40/261 (15%), Positives = 75/261 (28%), Gaps = 19/261 (7%)

Query: 5   LSLFVFVFSLPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPD 64
            S F   F++ R V  +      L      G E +   P G AF +       +    PD
Sbjct: 21  KSSFQTRFNVHREVTPVELPNCNLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPD 80

Query: 65  G-----FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY---ATRQLYIAD---- 112
                   D     P  S+    G     L        G++       T  L + +    
Sbjct: 81  KSGKILLMDLNEKEPAVSELEIIGN---TLDISSFNPHGISTFIDDDNTVYLLVVNHPGS 137

Query: 113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN 172
           + +  +        +         +    ++ +    G    Y T+     D        
Sbjct: 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEM 196

Query: 173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR 232
               +   +  Y+P    V V+        G+ IS D  ++ ++E   ++   Y      
Sbjct: 197 HLGLAWSFVTYYSPND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 254

Query: 233 A-NSFDIINFQAKPHNIKRNP 252
                 +++F     NI  +P
Sbjct: 255 TLTPLRVLSFDTLVDNISVDP 275

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 34/203 (16%), Positives = 56/203 (27%), Gaps = 31/203 (15%)

Query: 29  FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLD 88
           FP   F  E++A  P G  F T    G I+    PDG      T   +            
Sbjct: 28  FPVNTFL-ENLASAPDGTIFVTNHEVGEIVSI-TPDGNQQIHATVEGKV----------- 74

Query: 89  LGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVD 148
                    GLA   +   L      +  + V    +    + T        FL+G+   
Sbjct: 75  --------SGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL 125

Query: 149 QGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISV 208
                    D+     +            +G +   +P  ++          PA   +  
Sbjct: 126 SD-TQYLTADSYRGAIWLI-----DVVQPSGSIWLEHPMLARSNS---ESVFPAANGLKR 176

Query: 209 DSSFLLVSEFTGNRTLKYWLRGP 231
             +FL VS       L+  +   
Sbjct: 177 FGNFLYVSNTEKMLLLRIPVDST 199

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 35/219 (15%)

Query: 8   FVFVFSLPRMVFSIPTFTKILFPPKAFG-GESIAFEPVGG-AFYTGVADGRILKYQAPDG 65
           F    ++ RMV        I+ P  +     +I ++P+    ++       I K Q  DG
Sbjct: 313 FSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQ-EDG 371

Query: 66  FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG-LLVVGPNG 124
                 +           + NL++ P     + L++   +R +Y     +  + V   +G
Sbjct: 372 ------SQGFTVVVSSVPSQNLEIQP-----YDLSIDIYSRYIYWTCEATNVINVTRLDG 420

Query: 125 RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY 184
           R    +  G + +       + V+   G +YFT+                 + + ++   
Sbjct: 421 RSVGVVLKGEQDRP----RAVVVNPEKGYMYFTN---------------LQERSPKIERA 461

Query: 185 NPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNR 222
               ++  VL    L+ P  +A+      L  ++    R
Sbjct: 462 ALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRR 500

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 21/110 (19%)

Query: 98  GLALHYATRQLYIADAYSGLL-VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYF 156
           G+ L   + +LY  D+    +  +  NG     +    +  A  F   L V +    V++
Sbjct: 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF--SLAVFEDK--VFW 617

Query: 157 TDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAI 206
           TD         I   N                S V +L  NL  P  + +
Sbjct: 618 TDIIN----EAIFSANRLT------------GSDVNLLAENLLSPEDMVL 651

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 17/137 (12%)

Query: 82  DGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGP-NGRLATQLATGAEGQAFH 140
           D +    L P  R    L    A+ ++Y +D    ++     +             +   
Sbjct: 18  DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77

Query: 141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG 200
             DGL VD     +Y+TD+       T+   +       R           T+   N + 
Sbjct: 78  APDGLAVDWIHSNIYWTDSVL----GTVSVADT--KGVKR----------KTLFRENGSK 121

Query: 201 PAGVAISVDSSFLLVSE 217
           P  + +     F+  ++
Sbjct: 122 PRAIVVDPVHGFMYWTD 138

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 24/195 (12%)

Query: 36  GESIAFEPVGGAFY-TGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICR 94
            E  A+         + +   R+L ++           T                     
Sbjct: 47  SEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATA-------------------- 86

Query: 95  RTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVV 154
            T G A+    R ++       +     +G+    L     G+  +  + L V +  G +
Sbjct: 87  FTNGNAVDAQQRLVHCEHGRRAITRSDADGQA-HLLVGRYAGKRLNSPNDLIVAR-DGAI 144

Query: 155 YFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLL 214
           +FTD        +         +   +    P  S     + +L  P G+A S D   L 
Sbjct: 145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQRMADLDHPNGLAFSPDEQTLY 203

Query: 215 VSEFTGNRTLKYWLR 229
           VS+          + 
Sbjct: 204 VSQTPEQGHGSVEIT 218

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 38/222 (17%)

Query: 15  PRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTP 74
              + +I     +    K    E + F+  G  F   V +G I K           F + 
Sbjct: 26  ESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH 85

Query: 75  TRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD-----AYSGLLVVGPNGRLATQ 129
                                   + +H    +L++       +  G+     NG     
Sbjct: 86  -------KANPA-----------AIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126

Query: 130 LATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS 189
           +         + +D +  D   G  YFTD  G            + +  G +   +P   
Sbjct: 127 IIEDLST--AYCIDDMVFDS-KGGFYFTDFRGY-----------STNPLGGVYYVSPDFR 172

Query: 190 QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP 231
            VT +++N++   G+A+S D   L V+E T NR  +  L   
Sbjct: 173 TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 21/110 (19%)

Query: 98  GLALHYATRQLYIADAYSGLL-VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYF 156
           G+ L   + +LY  D+    +  +  NG     +    +  A  F   L V +    V++
Sbjct: 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF--SLAVFEDK--VFW 599

Query: 157 TDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAI 206
           TD         I   N                S V +L  NL  P  + +
Sbjct: 600 TD----IINEAIFSANRLT------------GSDVNLLAENLLSPEDMVL 633

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 42/205 (20%)

Query: 23  TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCD 82
              +   P        +    +G  ++T     +I K     GFT++    P        
Sbjct: 51  RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQP-------- 102

Query: 83  GTTNLDLGPICRRTFGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHF 141
                D GP     +G+        ++        +  +  +G     +          +
Sbjct: 103 -----DSGP-----YGITEG-LNGDIWFTQLNGDRIGKLTADGT----IYEYDLPNKGSY 147

Query: 142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGP 201
              + +      ++FT+        +I ++     +TG+L  Y         L  N   P
Sbjct: 148 PAFITLG-SDNALWFTENQN----NSIGRI----TNTGKLEEY--------PLPTNAAAP 190

Query: 202 AGVAISVDSSFLLVSEFTGNRTLKY 226
            G+    D + L   E  GN+  + 
Sbjct: 191 VGITSGNDGA-LWFVEIMGNKIGRI 214

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 21/126 (16%)

Query: 93  CRRTFGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGT 151
            R    +        +Y  D     +     +G  +  + T          DG+ VD   
Sbjct: 348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ----IAHPDGIAVDWVA 403

Query: 152 GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSS 211
             +Y+TD         I    +              + +  ++  +L  P  + +     
Sbjct: 404 RNLYWTDTG----TDRIEVTRLNG------------TMRKILISEDLEEPRAIVLDPMVG 447

Query: 212 FLLVSE 217
           ++  ++
Sbjct: 448 YMYWTD 453

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 98  GLALHYATRQLYIADAYSGLL-VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYF 156
           G+ L   + +LY  D+    +  +  NG     +    +  A  F   L V +    V++
Sbjct: 250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF--SLAVFEDK--VFW 305

Query: 157 TDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGV 204
           TD         I   N    S   LL+ N  S +  VL  NLT P GV
Sbjct: 306 TD----IINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGV 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.97
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.96
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.96
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.95
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.94
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.94
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.94
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.93
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.93
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.93
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.93
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.91
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.91
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.9
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.9
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.9
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.89
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.89
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.88
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.88
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.88
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.88
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.86
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.85
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.85
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.84
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.84
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.83
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.83
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.82
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.8
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.8
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.79
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.76
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.75
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.72
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.7
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.67
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.65
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.65
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.61
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.59
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.58
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.54
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.52
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.51
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.48
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.48
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.47
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.46
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.46
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.43
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.42
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.4
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.39
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.38
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.38
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.35
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.33
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.31
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.3
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.3
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.28
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.27
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.27
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.26
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.24
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.21
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.21
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.19
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.19
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.18
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.17
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.16
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.14
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.11
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.1
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.1
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.1
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.09
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.09
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.08
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.08
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.02
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.01
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.98
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.97
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.96
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.92
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.91
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.91
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.91
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.9
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.9
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.87
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.85
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.85
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.77
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.77
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.75
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.72
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.71
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.68
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.67
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.67
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.66
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.63
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.61
3ott_A	758	Two-component system sensor histidine kinase; beta	98.58
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.57
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.57
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.55
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.52
3ott_A	758	Two-component system sensor histidine kinase; beta	98.5
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.5
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.49
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.49
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.47
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.46
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.46
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.46
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.46
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.45
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.45
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.43
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.42
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.42
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.41
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.4
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.4
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.38
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.38
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.35
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.34
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.34
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.34
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.34
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.29
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.28
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.28
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.26
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.24
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.23
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.23
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.22
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.22
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.21
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.2
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.2
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.18
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.17
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.17
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.16
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.16
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.16
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.15
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.15
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.13
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.12
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.12
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.11
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.11
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.11
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.08
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.03
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.01
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.99
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.98
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.98
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.9
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.87
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.81
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.8
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.78
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.78
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.78
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.77
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.77
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.75
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.75
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.73
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.73
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.73
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.72
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.71
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.71
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.67
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.66
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.65
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.65
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.65
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.65
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.64
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.64
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.62
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.61
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.6
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.56
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.56
3jro_A	753	Fusion protein of protein transport protein SEC13	97.55
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.54
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.54
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.53
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.52
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.5
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.5
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.48
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.47
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.47
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.46
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.45
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.41
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.41
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.4
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.39
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.39
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.31
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.3
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.3
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.28
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.28
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.24
2pm7_B	297	Protein transport protein SEC13, protein transport	97.2
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.17
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.16
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.15
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.15
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.14
3jro_A	753	Fusion protein of protein transport protein SEC13	97.14
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.12
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.06
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.03
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.99
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	96.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.93
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.93
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.91
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.86
2pm7_B	297	Protein transport protein SEC13, protein transport	96.85
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.77
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.77
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.69
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.68
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.67
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.61
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.57
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.53
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.51
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.42
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	96.23
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.15
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	95.89
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.77
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.68
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.68
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	95.26
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.19
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.18
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.38
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	94.16
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	93.35
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.44
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	92.26
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	92.06
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	90.73
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	90.6
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	89.74
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	85.33
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	84.54

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=1.4e-37  Score=283.24  Aligned_cols=289  Identities=37%  Similarity=0.721  Sum_probs=213.9

Q ss_pred             eeeecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCce
Q 048181           18 VFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRT   96 (310)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P   96 (310)
                      +-+.|.++++++|+++..||++++|++|++||++..+++|++++++++ .+.+...........|+|.........+.+|
T Consensus         3 ~~~~~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p   82 (322)
T 2fp8_A            3 ALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRT   82 (322)
T ss_dssp             -------CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCE
T ss_pred             cccCCccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCC
Confidence            345678889999999999999999999999999999999999998864 5555432221111123331100111234579


Q ss_pred             eeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeC-CCCeEEEEcCCCccCccceeEeeeec
Q 048181           97 FGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQ-GTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~-~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      .||++++.+|+|||+|...+|+++|+++++.+.+.....+.++.+|||+++++ + |+|||+|+...+..+.+...+.+.
T Consensus        83 ~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~-G~l~v~d~~~~~~~~~~~~~~~~~  161 (322)
T 2fp8_A           83 YDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRT-GIVYFTDVSTLYDDRGVQQIMDTS  161 (322)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTT-CCEEEEESCSSCCTTCHHHHHHHT
T ss_pred             ceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCC-CEEEEECCcccccccccceehccc
Confidence            99999833899999998888999999887776666555566788999999999 6 999999986533322211112223


Q ss_pred             CCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCC
Q 048181          176 DSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGL  254 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~  254 (310)
                      .+.|+|+++|+++++++.+...+..||||++++||++|||+++.+++|++|++++...+..+. ..+++ |+||++|+  
T Consensus       162 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~--  238 (322)
T 2fp8_A          162 DKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA--  238 (322)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT--
T ss_pred             CCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC--
Confidence            456899999998888888888889999999999999999999999999999998755555555 45677 99999999  


Q ss_pred             CCcEEEEEecCCCCCC--CCceeeEEECCCCcEEEEEecCCCccccceeEEEecCCCC
Q 048181          255 LQTFWEAAIITRQPAG--TPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGAL  310 (310)
Q Consensus       255 dG~l~va~~~~~~~~~--~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~~~~l  310 (310)
                      +|+|||+.+..+...|  .....+.++|++|+++..+..|.+..+..++.++..+++|
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L  296 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLL  296 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEE
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEE
Confidence            9999999987322111  0125799999999999999999875567788888777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.97  E-value=9.6e-30  Score=234.47  Aligned_cols=260  Identities=14%  Similarity=0.148  Sum_probs=186.0

Q ss_pred             CCCCCCCcceEEEccCCCEEEEE------------eCCCeEEEEECCC---ceEEeeeecCCCCccccCCCccccCCCCC
Q 048181           29 FPPKAFGGESIAFEPVGGAFYTG------------VADGRILKYQAPD---GFTDFAFTTPTRSKAVCDGTTNLDLGPIC   93 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~G~l~~~d------------~~~g~I~r~~~~g---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   93 (310)
                      +++-..+||+|+++++|.+|.+.            ...|+|+++++++   +.+.+...+.             .+....
T Consensus        45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~-------------~~~~~~  111 (355)
T 3sre_A           45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN-------------TLDISS  111 (355)
T ss_dssp             CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS-------------SCCGGG
T ss_pred             eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC-------------CCCcCc
Confidence            35434699999999998766554            2689999999872   3334332110             011235


Q ss_pred             CceeeEEEecC-CC--eEEEEeCCC-----cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCc
Q 048181           94 RRTFGLALHYA-TR--QLYIADAYS-----GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDF  165 (310)
Q Consensus        94 ~~P~Gla~d~~-~g--~LyVad~~~-----gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~  165 (310)
                      .+|+||.+... +|  +|||+++..     ++++++++++.. ++...+.++++++|||+++++ +|++|+|++..--..
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~-~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~  189 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDP  189 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEE-EEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEE-EEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCc
Confidence            69999998531 34  799999874     288999887654 455667788999999999999 599999987431000


Q ss_pred             cceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce---eeecCC
Q 048181          166 RTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF---DIINFQ  242 (310)
Q Consensus       166 ~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~---~~~~l~  242 (310)
                      .....+.....+.|+||++|+.  +++++.+++.+||||++||||++|||+|+..++|++|+++..  |..   ++..++
T Consensus       190 ~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~--g~l~~~~~~~~~  265 (355)
T 3sre_A          190 YLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN--WTLTPLRVLSFD  265 (355)
T ss_dssp             HHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT--SCEEEEEEEECS
T ss_pred             ccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC--CcEecCEEEeCC
Confidence            0000001123467999999984  677888999999999999999999999999999999999743  332   224557


Q ss_pred             CCCceeeeCCCCC-CcEEEEEecCC------CCCCCCceeeEEEC----CCCcEEEEEecCCCccccceeEEEecCCCC
Q 048181          243 AKPHNIKRNPGLL-QTFWEAAIITR------QPAGTPVPIGQRIS----AFGAVLDTISFEAQYSTTPISEVQPFGGAL  310 (310)
Q Consensus       243 g~Pdgl~~d~~~d-G~l~va~~~~~------~~~~~~~~~v~~~~----~~G~~~~~~~~p~~~~~~~~t~~~~~~~~l  310 (310)
                      +.||||++|+  + |+||+|++...      +|.......+.|+.    +++++.+++.. +|..++.+|.+.+++|+|
T Consensus       266 g~PDGi~vD~--e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~~T~a~~~~g~L  341 (355)
T 3sre_A          266 TLVDNISVDP--VTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKL  341 (355)
T ss_dssp             SEEEEEEECT--TTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEE-CSSSCCSEEEEEEETTEE
T ss_pred             CCCceEEEeC--CCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEEEEc-CCCEEEeeEEEEEECCEE
Confidence            8999999998  7 99999875331      11111234566665    57888888888 677899999999999986

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.96  E-value=5.4e-28  Score=217.43  Aligned_cols=230  Identities=13%  Similarity=0.145  Sum_probs=178.4

Q ss_pred             CCCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181           29 FPPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR  106 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g  106 (310)
                      +..++..+||++|+++ +.+||+|+.+++|++++++++.. .+.                     ....|.+++++ ++|
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~---------------------~~~~~~~i~~~-~dG   65 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT---------------------MDAPVSSVALR-QSG   65 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE---------------------CSSCEEEEEEB-TTS
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe---------------------CCCceEEEEEC-CCC
Confidence            3446678999999985 78999999999999999986533 221                     12468899997 788


Q ss_pred             eEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          107 QLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       107 ~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      +||++. ..+|+++|+++++.+.+.....+.+.+.||++++|+ +|++|++++.......      ......++||++++
T Consensus        66 ~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~------~~~~~~~~l~~~d~  137 (297)
T 3g4e_A           66 GYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPA------VLERHQGALYSLFP  137 (297)
T ss_dssp             SEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTT------BCCTTCEEEEEECT
T ss_pred             CEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccc------cccCCCcEEEEEEC
Confidence            999987 457999999988887766554455678899999999 5999999864311000      01134578999998


Q ss_pred             CCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce---ee-ecC---CCCCceeeeCCCCCCcEE
Q 048181          187 RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF---DI-INF---QAKPHNIKRNPGLLQTFW  259 (310)
Q Consensus       187 ~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~---~~-~~l---~g~Pdgl~~d~~~dG~l~  259 (310)
                      + +++..+...+..||||+++|||++||++++..++|++|+++.. .|..   ++ ..+   .+.||||++|+  +|+||
T Consensus       138 ~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~-~G~~~~~~~~~~~~~~~~~p~g~~~d~--~G~lw  213 (297)
T 3g4e_A          138 D-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ-TGQISNRRSVYKLEKEEQIPDGMCIDA--EGKLW  213 (297)
T ss_dssp             T-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT-TCCEEEEEEEEECCGGGCEEEEEEEBT--TSCEE
T ss_pred             C-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCC-CCcccCcEEEEECCCCCCCCCeeEECC--CCCEE
Confidence            6 6777777888899999999999999999999999999998532 2322   22 222   36799999999  99999


Q ss_pred             EEEecCCCCCCCCceeeEEECCC-CcEEEEEecCCCccccceeEEE
Q 048181          260 EAAIITRQPAGTPVPIGQRISAF-GAVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       260 va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~p~~~~~~~~t~~~  304 (310)
                      ++.+...        +|.++|++ |+++..+..|..    .++.++
T Consensus       214 va~~~~~--------~v~~~d~~tG~~~~~i~~p~~----~~t~~~  247 (297)
T 3g4e_A          214 VACYNGG--------RVIRLDPVTGKRLQTVKLPVD----KTTSCC  247 (297)
T ss_dssp             EEEETTT--------EEEEECTTTCCEEEEEECSSS----BEEEEE
T ss_pred             EEEcCCC--------EEEEEcCCCceEEEEEECCCC----CceEEE
Confidence            9998763        79999997 999999999964    455554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.96  E-value=7.5e-28  Score=217.17  Aligned_cols=234  Identities=15%  Similarity=0.117  Sum_probs=177.2

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGG-AFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      .++++.  .++..+||++|+++|+ |||++..+++|++++++++...+..                    ....|+|+++
T Consensus        36 ~~~~l~--~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~--------------------~~~~~~gl~~   93 (305)
T 3dr2_A           36 RLLTLY--DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLD--------------------ATAFTNGNAV   93 (305)
T ss_dssp             CCEEEE--CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEE--------------------SCSCEEEEEE
T ss_pred             ceEEEe--cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeC--------------------CCCccceeeE
Confidence            444443  3567899999999987 9999999999999999776555431                    2346899999


Q ss_pred             ecCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181          102 HYATRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       102 d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      + ++|+||+++.. .+|.+++++ ++.+.+.....+.+++.||++++++ +|++||||+...................+.
T Consensus        94 d-~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~  170 (305)
T 3dr2_A           94 D-AQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHS  170 (305)
T ss_dssp             C-TTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred             C-CCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCe
Confidence            8 78999999876 569999987 5666666555667788999999999 599999997431100000000001123478


Q ss_pred             EEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCC-----CeEEEEEecCCCCCceee-ec-CCCCCceeeeCCC
Q 048181          181 LLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG-----NRTLKYWLRGPRANSFDI-IN-FQAKPHNIKRNPG  253 (310)
Q Consensus       181 l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~-----~~I~~~~~~~~~~g~~~~-~~-l~g~Pdgl~~d~~  253 (310)
                      |+++|+++++++.+. .+..|||++++|||+.||++++..     ++|++|++++......++ .. ..+.||||++|+ 
T Consensus       171 v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-  248 (305)
T 3dr2_A          171 VYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-  248 (305)
T ss_dssp             EEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-
T ss_pred             EEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-
Confidence            999999888887777 888999999999999999999874     899999987532111222 22 357899999999 


Q ss_pred             CCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          254 LLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       254 ~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                       +|+||++...          .|.+++++|+.+..+..|.+
T Consensus       249 -~G~lwv~~~~----------gv~~~~~~g~~~~~~~~~~~  278 (305)
T 3dr2_A          249 -GGWLWSSSGT----------GVCVFDSDGQLLGHIPTPGT  278 (305)
T ss_dssp             -TSCEEECCSS----------EEEEECTTSCEEEEEECSSC
T ss_pred             -CCCEEEecCC----------cEEEECCCCCEEEEEECCCc
Confidence             9999999832          59999999999999998863

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.95  E-value=1.1e-25  Score=201.42  Aligned_cols=234  Identities=14%  Similarity=0.135  Sum_probs=178.4

Q ss_pred             eecceEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceee
Q 048181           20 SIPTFTKILFPPKAFGGESIAFEPVGG-AFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFG   98 (310)
Q Consensus        20 ~~~~~~~~~~~~~~~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~G   98 (310)
                      +.+.++.+.  ..+..||+++|+++|+ +||++..+++|++++++++...+.                    .....|.+
T Consensus        16 ~~~~~~~l~--~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~~   73 (296)
T 3e5z_A           16 AGAEARRLA--DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEM--------------------HPSHHQNG   73 (296)
T ss_dssp             TTCCCEEEE--CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEE--------------------SSCSSEEE
T ss_pred             CCCcEEEEe--cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEE--------------------CCCCCcce
Confidence            445666665  3467899999999998 999999999999999987643332                    12356899


Q ss_pred             EEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCcc-CccceeEeeeecC
Q 048181           99 LALHYATRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVY-DFRTIVKLNITND  176 (310)
Q Consensus        99 la~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~-~~~~~~~~~~~~~  176 (310)
                      |+++ ++|+||+++.. .+|.++|+++++.+.+.....+.++..||++++++ +|++|+||+.... ....... .....
T Consensus        74 l~~~-~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~-~~~~~  150 (296)
T 3e5z_A           74 HCLN-KQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYG-GEMEL  150 (296)
T ss_dssp             EEEC-TTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSC-CCCCS
T ss_pred             eeEC-CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCcccccccccccc-ccccC
Confidence            9998 78999999876 56999999777776665444555678899999999 5999999874210 0000000 00112


Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce----eee-cCCCCCceeeeC
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF----DII-NFQAKPHNIKRN  251 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~----~~~-~l~g~Pdgl~~d  251 (310)
                      ..++|++++++ ++++.+...+..||||+++|||+.| ++++..++|++|+++..  |..    ++. ...+.|++|++|
T Consensus       151 ~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~p~~i~~d  226 (296)
T 3e5z_A          151 PGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNAR--GETEYQGVHFTVEPGKTDGLRVD  226 (296)
T ss_dssp             SSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSS--SCEEEEEEEECCSSSCCCSEEEB
T ss_pred             CCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCC--CcCcCCCeEeeCCCCCCCeEEEC
Confidence            34689999997 8888888888899999999999977 99999999999998632  333    122 234679999999


Q ss_pred             CCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          252 PGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       252 ~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      +  +|+||++. ..         .|.+++++|+.+..+..|.+
T Consensus       227 ~--~G~l~v~~-~~---------~v~~~~~~g~~~~~~~~~~~  257 (296)
T 3e5z_A          227 A--GGLIWASA-GD---------GVHVLTPDGDELGRVLTPQT  257 (296)
T ss_dssp             T--TSCEEEEE-TT---------EEEEECTTSCEEEEEECSSC
T ss_pred             C--CCCEEEEc-CC---------eEEEECCCCCEEEEEECCCC
Confidence            9  99999999 33         79999999999999998864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.95  E-value=3.7e-26  Score=206.53  Aligned_cols=224  Identities=15%  Similarity=0.096  Sum_probs=166.6

Q ss_pred             ecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181           21 IPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA  100 (310)
Q Consensus        21 ~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla  100 (310)
                      ...+.+++.+   ..||+++|+++|++||+|..+++|++++++++...+.                    .....|.||+
T Consensus        22 ~~~~~~~p~~---~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~--------------------~~~~~p~gia   78 (306)
T 2p4o_A           22 AKIITSFPVN---TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA--------------------TVEGKVSGLA   78 (306)
T ss_dssp             EEEEEEECTT---CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE--------------------ECSSEEEEEE
T ss_pred             ceEeEeCCCC---CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEE--------------------eCCCCceeEE
Confidence            3344455443   5799999999999999999999999999988654432                    1234799999


Q ss_pred             EecCCCeEEEEeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCC
Q 048181          101 LHYATRQLYIADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDS  177 (310)
Q Consensus       101 ~d~~~g~LyVad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~  177 (310)
                      ++ ++|+|||++...   .|++++..+++++.+....   ...++|++++.+ ++++|++|..                 
T Consensus        79 ~~-~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~g~~~~~-~~~~~v~d~~-----------------  136 (306)
T 2p4o_A           79 FT-SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP---DAIFLNGITPLS-DTQYLTADSY-----------------  136 (306)
T ss_dssp             EC-TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT---TCSCEEEEEESS-SSEEEEEETT-----------------
T ss_pred             Ec-CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC---CccccCcccccC-CCcEEEEECC-----------------
Confidence            97 789999999642   3899998888776665432   245689999887 5899999864                 


Q ss_pred             CceEEEEcCCCCeEEEe-----------ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC-CCCceee-ecCCCC
Q 048181          178 TGRLLSYNPRSSQVTVL-----------LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP-RANSFDI-INFQAK  244 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~-----------~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~-~~g~~~~-~~l~g~  244 (310)
                      +|+||++|+.+++.++.           ...+..||||  ++||++|||+++.+++|++|++++. ..+..++ ..+ ..
T Consensus       137 ~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~  213 (306)
T 2p4o_A          137 RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TN  213 (306)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CC
T ss_pred             CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CC
Confidence            37899999875533322           2356789999  8899999999999999999999752 2222333 333 46


Q ss_pred             CceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEE
Q 048181          245 PHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       245 Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~  304 (310)
                      |+||++|+  +|+|||+.+...        +|.+++++|++.....++.+  +...+.++
T Consensus       214 P~gi~vd~--dG~l~va~~~~~--------~V~~~~~~G~~~~~~~~~~~--~~~p~~~a  261 (306)
T 2p4o_A          214 IDDFAFDV--EGNLYGATHIYN--------SVVRIAPDRSTTIIAQAEQG--VIGSTAVA  261 (306)
T ss_dssp             CSSEEEBT--TCCEEEECBTTC--------CEEEECTTCCEEEEECGGGT--CTTEEEEE
T ss_pred             CCCeEECC--CCCEEEEeCCCC--------eEEEECCCCCEEEEeecccc--cCCceEEE
Confidence            99999999  999999998763        79999999998654444433  23555555

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.94  E-value=3.4e-24  Score=197.77  Aligned_cols=208  Identities=16%  Similarity=0.175  Sum_probs=163.2

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      .+..|++++||+ ++.+||+|..+++|+|++++++. +.+.                   ......|.||++|..+++||
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-------------------~~~~~~p~glavd~~~g~ly  131 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------------------STGLESPGGLAVDWVHDKLY  131 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------CSSCSCCCEEEEETTTTEEE
T ss_pred             CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-------------------eCCCCCccEEEEecCCCeEE
Confidence            467899999995 57899999999999999998753 3322                   12345789999996689999


Q ss_pred             EEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Vad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++|... .|.++++++...+.+..    ..+..|+++++||.+|.||+||...                .++|++++.+.
T Consensus       132 ~~d~~~~~I~~~~~dG~~~~~l~~----~~l~~P~~iavdp~~g~ly~td~~~----------------~~~I~r~~~dG  191 (349)
T 3v64_C          132 WTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMDG  191 (349)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEC----TTCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTS
T ss_pred             EEcCCCCeEEEEcCCCCceEEEEe----CCCCCcceEEEecCcCeEEEeccCC----------------CCEEEEEeCCC
Confidence            999875 49999988765444432    2467899999998679999999753                36899999875


Q ss_pred             CeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          189 SQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       189 g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ...+.+. .++..||||++|++++.||++|+..++|++++++|.  ....+  ..+ +.|+||+++   +|+||++++..
T Consensus       192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~--~~~~~~~~~~-~~P~giav~---~~~ly~td~~~  265 (349)
T 3v64_C          192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVISQGL-PHPFAITVF---EDSLYWTDWHT  265 (349)
T ss_dssp             CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSSC-SSEEEEEEE---TTEEEEEETTT
T ss_pred             CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC--ceEEEEeCCC-CCceEEEEE---CCEEEEecCCC
Confidence            4444443 578899999999988899999999999999999874  22222  333 479999996   57999999987


Q ss_pred             CCCCCCCceeeEEEC-CCCcEEEEEecC
Q 048181          266 RQPAGTPVPIGQRIS-AFGAVLDTISFE  292 (310)
Q Consensus       266 ~~~~~~~~~~v~~~~-~~G~~~~~~~~p  292 (310)
                      .        .|.+++ .+|+.+..+..+
T Consensus       266 ~--------~V~~~~~~~G~~~~~i~~~  285 (349)
T 3v64_C          266 K--------SINSANKFTGKNQEIIRNK  285 (349)
T ss_dssp             T--------EEEEEETTTCCSCEEEECS
T ss_pred             C--------eEEEEEccCCCccEEeccC
Confidence            4        899998 689988888754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.94  E-value=2.3e-24  Score=201.58  Aligned_cols=208  Identities=16%  Similarity=0.179  Sum_probs=163.5

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      .+..|++++||+ ++.|||+|..+++|+|++++++. +.+.                   ......|.||++|..+++||
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-------------------~~~~~~p~glavd~~~g~lY  174 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------------------STGLESPGGLAVDWVHDKLY  174 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-------------------CSSCSCCCCEEEETTTTEEE
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-------------------eCCCCCccEEEEEeCCCeEE
Confidence            467899999995 57899999999999999998763 3322                   12345799999996689999


Q ss_pred             EEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Vad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++|... .|.++++++...+.+..    ..+..|+++++||.+|.||+||...                .++|++++++.
T Consensus       175 ~~d~~~~~I~~~~~dg~~~~~l~~----~~l~~P~giavdp~~g~ly~td~~~----------------~~~I~r~~~dG  234 (386)
T 3v65_B          175 WTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMDG  234 (386)
T ss_dssp             EEETTTTEEEECBTTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTS
T ss_pred             EEcCCCCeEEEEeCCCCceEEeec----CCCCCCcEEEEEcCCCeEEEeccCC----------------CCEEEEEeCCC
Confidence            999875 48899988765444432    2467899999998779999999753                36899999875


Q ss_pred             CeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          189 SQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       189 g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ...+.+. .++..||||+++++++.||++|+..++|++++++|.  ....+  .++ +.|+||++++   ++||++++..
T Consensus       235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~~~-~~P~giav~~---~~ly~td~~~  308 (386)
T 3v65_B          235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVISQGL-PHPFAITVFE---DSLYWTDWHT  308 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC--SCEEEECSSC-SSEEEEEEET---TEEEEEETTT
T ss_pred             CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC--eeEEEEECCC-CCceEEEEEC---CEEEEeeCCC
Confidence            4444443 578899999999988899999999999999999863  22223  333 4799999964   7999999876


Q ss_pred             CCCCCCCceeeEEEC-CCCcEEEEEecC
Q 048181          266 RQPAGTPVPIGQRIS-AFGAVLDTISFE  292 (310)
Q Consensus       266 ~~~~~~~~~~v~~~~-~~G~~~~~~~~p  292 (310)
                      .        .|.+++ ++|+.+..+..+
T Consensus       309 ~--------~V~~~~~~~G~~~~~i~~~  328 (386)
T 3v65_B          309 K--------SINSANKFTGKNQEIIRNK  328 (386)
T ss_dssp             T--------EEEEEETTTCCSCEEEECS
T ss_pred             C--------eEEEEECCCCcceEEEccC
Confidence            4        899999 789988888765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.94  E-value=3.4e-24  Score=195.38  Aligned_cols=220  Identities=15%  Similarity=0.136  Sum_probs=167.2

Q ss_pred             cceEEEeCCCC----------CCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCcccc
Q 048181           22 PTFTKILFPPK----------AFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLD   88 (310)
Q Consensus        22 ~~~~~~~~~~~----------~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~   88 (310)
                      +.+..+.+.+.          +..|.+++||+ ++.|||+|+.+++|+|++++++.  ..+..                 
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-----------------   75 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-----------------   75 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-----------------
T ss_pred             CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-----------------
Confidence            45666666543          34688899997 58899999999999999998652  12110                 


Q ss_pred             CCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccc
Q 048181           89 LGPICRRTFGLALHYATRQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRT  167 (310)
Q Consensus        89 ~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~  167 (310)
                        .....|.||++|..+++||++|... .|.++++++...+.+..    ..+..|+++++|+.+|.||+||...      
T Consensus        76 --~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~~~~P~giavdp~~g~ly~td~~~------  143 (318)
T 3sov_A           76 --SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGE------  143 (318)
T ss_dssp             --ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSSEEEEEEEGGGTEEEEEECSS------
T ss_pred             --CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe----CCCCCccEEEEeCCCCEEEEEecCC------
Confidence              2345799999986689999999875 49999998765555432    2467899999998679999999642      


Q ss_pred             eeEeeeecCCCceEEEEcCCCCeEEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCC
Q 048181          168 IVKLNITNDSTGRLLSYNPRSSQVTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKP  245 (310)
Q Consensus       168 ~~~~~~~~~~~G~l~~~d~~~g~~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~P  245 (310)
                                .++|++++++....+.+ ..++..||||++|++++.||++|+..++|++++++|..  ...+ ..-.+.|
T Consensus       144 ----------~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~--~~~~~~~~~~~P  211 (318)
T 3sov_A          144 ----------VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN--RQAVVKGSLPHP  211 (318)
T ss_dssp             ----------SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSCCSCE
T ss_pred             ----------CCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc--eEEEecCCCCCc
Confidence                      36899999874444444 36788999999999888999999999999999998742  2222 2223479


Q ss_pred             ceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCC
Q 048181          246 HNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEA  293 (310)
Q Consensus       246 dgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~  293 (310)
                      +||++++   +.+|++++..+        .|.++++ +|+.++.+..+.
T Consensus       212 ~glav~~---~~lywtd~~~~--------~V~~~~~~~G~~~~~i~~~~  249 (318)
T 3sov_A          212 FALTLFE---DILYWTDWSTH--------SILACNKYTGEGLREIHSDI  249 (318)
T ss_dssp             EEEEEET---TEEEEEETTTT--------EEEEEETTTCCSCEEEECCC
T ss_pred             eEEEEeC---CEEEEEecCCC--------eEEEEECCCCCceEEEeCCC
Confidence            9999987   57888888763        8999998 799888887653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.93  E-value=8.8e-24  Score=192.26  Aligned_cols=208  Identities=14%  Similarity=0.125  Sum_probs=157.8

Q ss_pred             CCCCcceEEEccC-CCEEEEEeCCCeEEEEECCC----ce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           32 KAFGGESIAFEPV-GGAFYTGVADGRILKYQAPD----GF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        32 ~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g----~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      .+..|++++||++ +.+||+|..+++|++++.++    +. +.+.                   ......|.||++|..+
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-------------------~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------------SRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------------------CSSCSCCCEEEEETTT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-------------------eCCCCCcCEEEEeecC
Confidence            4678999999975 68999999999999999886    22 2111                   1234579999998568


Q ss_pred             CeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          106 RQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       106 g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      ++||++|... .|.++++++...+.+...    .+..|+++++||.+|++|++|...                .++|+++
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~~----------------~~~I~~~  148 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKG  148 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEEC----CCCCcceEEeCCCCCEEEEEccCC----------------CCeEEEE
Confidence            8999999865 499999987655555431    356899999998679999999642                3689999


Q ss_pred             cCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e--cCCCCCceeeeCCCCCCcEEE
Q 048181          185 NPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I--NFQAKPHNIKRNPGLLQTFWE  260 (310)
Q Consensus       185 d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~--~l~g~Pdgl~~d~~~dG~l~v  260 (310)
                      +++....+.+. ..+..||||+++++++.||++|+..++|++++++|...  ..+ .  .....|+||+++.   |+||+
T Consensus       149 ~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~--~~~~~~~~~~~~P~giav~~---~~ly~  223 (316)
T 1ijq_A          149 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFE---DKVFW  223 (316)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECTTTTSSEEEEEEET---TEEEE
T ss_pred             cCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce--EEEeecCCccCCcEEEEEEC---CEEEE
Confidence            98744444443 57889999999999889999999999999999986421  222 2  1234799999975   79999


Q ss_pred             EEecCCCCCCCCceeeEEECC-CCcEEEEEec
Q 048181          261 AAIITRQPAGTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       261 a~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                      +++...        +|.++++ +|+.++.+..
T Consensus       224 ~d~~~~--------~V~~~~~~~g~~~~~i~~  247 (316)
T 1ijq_A          224 TDIINE--------AIFSANRLTGSDVNLLAE  247 (316)
T ss_dssp             EETTTT--------EEEEEETTTCCCCEEEEC
T ss_pred             EECCCC--------eEEEEeCCCCcceEEEec
Confidence            998764        8999997 7887777653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.93  E-value=2.3e-23  Score=184.01  Aligned_cols=208  Identities=16%  Similarity=0.133  Sum_probs=157.8

Q ss_pred             CCcceEEEccC-CCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           34 FGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ..|+++++|++ +.+||+|..+++|++++++++.. .+.                   ......|.||++|+.+++||++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-------------------~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-------------------RQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-------------------CTTCCCEEEEEEETTTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-------------------ECCCCCccEEEEEecCCeEEEE
Confidence            35789999985 68999999999999999987532 221                   1234589999998557899999


Q ss_pred             eCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          112 DAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       112 d~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      |... .|.+++.++...+.+...    .+..|+++++|+++|+||++|...               .+++|++++.+...
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~i~vd~~~g~lyv~~~~~---------------~~~~I~~~~~dg~~  157 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTN  157 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCC
T ss_pred             ECCCCEEEEEEcCCCCEEEEEEC----CCCCccEEEEeeCCCEEEEEECCC---------------CCcEEEEEecCCCC
Confidence            9865 499999886544444321    356899999999669999999642               13688888876444


Q ss_pred             EEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecCCCCC
Q 048181          191 VTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPA  269 (310)
Q Consensus       191 ~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~  269 (310)
                      .+.+. ..+..|+||+++++++.||+++...++|+++++++..  ...+......|+||++|.   |+||++++...   
T Consensus       158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~~~~~~~P~gi~~d~---~~lyva~~~~~---  229 (267)
T 1npe_A          158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG--RRKVLEGLQYPFAVTSYG---KNLYYTDWKTN---  229 (267)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE--EEEEEECCCSEEEEEEET---TEEEEEETTTT---
T ss_pred             cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc--eEEEecCCCCceEEEEeC---CEEEEEECCCC---
Confidence            44443 5678999999999988999999999999999987521  112222234799999985   79999998863   


Q ss_pred             CCCceeeEEECCC-CcEEEEEecC
Q 048181          270 GTPVPIGQRISAF-GAVLDTISFE  292 (310)
Q Consensus       270 ~~~~~~v~~~~~~-G~~~~~~~~p  292 (310)
                           .|.++|++ |+++..+...
T Consensus       230 -----~v~~~d~~~g~~~~~i~~g  248 (267)
T 1npe_A          230 -----SVIAMDLAISKEMDTFHPH  248 (267)
T ss_dssp             -----EEEEEETTTTEEEEEECCS
T ss_pred             -----eEEEEeCCCCCceEEEccc
Confidence                 79999986 8999888654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.93  E-value=3.3e-23  Score=188.92  Aligned_cols=234  Identities=14%  Similarity=0.130  Sum_probs=174.6

Q ss_pred             eeecceEEEeCCCCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCce
Q 048181           19 FSIPTFTKILFPPKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRT   96 (310)
Q Consensus        19 ~~~~~~~~~~~~~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P   96 (310)
                      -++++++.+. ...+..+|+++|+++ +.+||++..+++|++++++++.. .+.                     ....+
T Consensus        35 ~~~~~~~~~~-~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~---------------------~~~~v   92 (326)
T 2ghs_A           35 VFPFAGRVLD-ETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA---------------------LPFMG   92 (326)
T ss_dssp             EECCCCEEEE-CSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---------------------CSSCE
T ss_pred             ccccceEEee-ccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE---------------------CCCcc
Confidence            3444566653 334567999999997 67999999999999999986543 221                     12357


Q ss_pred             eeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181           97 FGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      .+++++ ++|++||+. ..+|+++|+++++.+.+.....+.+.+.+|++++|+ +|++|+++....           ...
T Consensus        93 ~~i~~~-~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~-----------~~~  158 (326)
T 2ghs_A           93 SALAKI-SDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRK-----------AET  158 (326)
T ss_dssp             EEEEEE-ETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETT-----------CCT
T ss_pred             eEEEEe-CCCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCc-----------CCC
Confidence            889997 689999986 457999999888776654432333456799999999 599999875321           012


Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec--CC-CCCceee-ec---CCCCCceee
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR--GP-RANSFDI-IN---FQAKPHNIK  249 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~--~~-~~g~~~~-~~---l~g~Pdgl~  249 (310)
                      ..+.||+++  +++++.+......||||++++||+.||++++..++|++|+++  .. .....++ ..   ..+.|++++
T Consensus       159 ~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~  236 (326)
T 2ghs_A          159 GAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV  236 (326)
T ss_dssp             TCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE
T ss_pred             CceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeE
Confidence            357899999  477777666777899999999999999999999999999986  21 1111122 22   235799999


Q ss_pred             eCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEE
Q 048181          250 RNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       250 ~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~  304 (310)
                      +|+  +|+||++.+...        .+.+++++|+++..+..|..    .++.++
T Consensus       237 ~d~--~G~lwva~~~~~--------~v~~~d~~g~~~~~i~~~~~----~~~~~a  277 (326)
T 2ghs_A          237 CDA--EGHIWNARWGEG--------AVDRYDTDGNHIARYEVPGK----QTTCPA  277 (326)
T ss_dssp             ECT--TSCEEEEEETTT--------EEEEECTTCCEEEEEECSCS----BEEEEE
T ss_pred             ECC--CCCEEEEEeCCC--------EEEEECCCCCEEEEEECCCC----CcEEEE
Confidence            999  999999998653        79999999999999998864    455554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.93  E-value=5.3e-23  Score=193.20  Aligned_cols=226  Identities=14%  Similarity=0.130  Sum_probs=168.2

Q ss_pred             Cceeee-ecceEEEeCCC--------CCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCce-----EEeeeecCCCCcc
Q 048181           15 PRMVFS-IPTFTKILFPP--------KAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGF-----TDFAFTTPTRSKA   79 (310)
Q Consensus        15 ~~~~~~-~~~~~~~~~~~--------~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~-----~~~~~~~~~~~~~   79 (310)
                      |.+.++ .+.+..+.+.+        .+..|.+|+||+ ++.|||+|..+++|+|++.++..     ..+.         
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~---------  154 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---------  154 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE---------
T ss_pred             ceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE---------
Confidence            333343 35566665543        467899999997 57899999999999999988621     2211         


Q ss_pred             ccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEc
Q 048181           80 VCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTD  158 (310)
Q Consensus        80 ~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd  158 (310)
                                ......|.||++|..+++||++|... .|.++++++...+.+...    .+..|++|++||.+|.||+||
T Consensus       155 ----------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td  220 (400)
T 3p5b_L          155 ----------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTD  220 (400)
T ss_dssp             ----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----SSCCEEEEEEETTTTEEEEEE
T ss_pred             ----------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC----CCCCcceEEEecccCeEEEEe
Confidence                      12456899999995589999999875 499999988665555432    456799999998779999999


Q ss_pred             CCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee
Q 048181          159 ASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD  237 (310)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~  237 (310)
                      ...                .++|++++.+....+.+ ..++..||||++|++++.||++|+..++|++++++|..  ...
T Consensus       221 ~~~----------------~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~--~~~  282 (400)
T 3p5b_L          221 WGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--RKT  282 (400)
T ss_dssp             CSS----------------SCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--CEE
T ss_pred             CCC----------------CCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc--cEE
Confidence            753                25799999875444444 45788999999999888999999999999999998742  222


Q ss_pred             e-e--cCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecC
Q 048181          238 I-I--NFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFE  292 (310)
Q Consensus       238 ~-~--~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p  292 (310)
                      + .  .....|.||+++.   +.||++++...        .|.++| .+|+.+..+..+
T Consensus       283 ~~~~~~~l~~P~gl~v~~---~~lywtd~~~~--------~V~~~~~~~G~~~~~i~~~  330 (400)
T 3p5b_L          283 ILEDEKRLAHPFSLAVFE---DKVFWTDIINE--------AIFSANRLTGSDVNLLAEN  330 (400)
T ss_dssp             EEECSSTTSSEEEEEEET---TEEEEEESSSC--------SEEEEESSSCCCCEEEECS
T ss_pred             EEeCCCCCCCCEEEEEeC---CEEEEecCCCC--------eEEEEEcCCCCceEEEecC
Confidence            2 2  1124699999975   68999988763        799999 689888888754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.92  E-value=4e-23  Score=185.02  Aligned_cols=231  Identities=17%  Similarity=0.215  Sum_probs=169.9

Q ss_pred             CCCCCCcceEEEccCCCEEEE-------EeCCCeEEEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           30 PPKAFGGESIAFEPVGGAFYT-------GVADGRILKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~-------d~~~g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      ...+..|++++|+++|++|++       +..+++|+++++. ++...+...               ........|.++++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------~~~~~~~~~~~i~~   78 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQC   78 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec---------------ccCCCCCCCceEEE
Confidence            567889999999999998888       6778999999965 444433210               00012356899999


Q ss_pred             ecCC-CeEEEEeCCCcEEEEeCCCCeEEEe-eccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181          102 HYAT-RQLYIADAYSGLLVVGPNGRLATQL-ATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       102 d~~~-g~LyVad~~~gi~~id~~~~~~~~~-~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      + ++ |+|||++...+|++++++ ++...+ .....+.+...|+++++++ +|++|+++........++..  ......+
T Consensus        79 ~-~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~--~~~~~~~  153 (314)
T 1pjx_A           79 D-RDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTR--SMQEKFG  153 (314)
T ss_dssp             C-SSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCB--TTSSSCE
T ss_pred             e-cCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccc--cccCCCC
Confidence            8 66 999999987789999998 676655 4433344567899999999 59999998753100000000  0112347


Q ss_pred             eEEEEcCCCCeEEEeecCCCCCceeEEc----cCCCEEEEEecCCCeEEEEEecCCCCCce---ee-ecCC----CCCce
Q 048181          180 RLLSYNPRSSQVTVLLRNLTGPAGVAIS----VDSSFLLVSEFTGNRTLKYWLRGPRANSF---DI-INFQ----AKPHN  247 (310)
Q Consensus       180 ~l~~~d~~~g~~~~~~~~l~~pnGIa~~----~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~---~~-~~l~----g~Pdg  247 (310)
                      .|+++|++ ++.+.+...+..|++++++    +||+.||++++..++|++|+++..  +..   +. ..++    +.|++
T Consensus       154 ~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~p~~  230 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             EEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET--TEEEEEEEEEECCCCSSCEEEE
T ss_pred             eEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC--CccccceEEEECCCCCCCCCCc
Confidence            89999987 7777766777789999999    999889999999999999998621  221   12 2333    56999


Q ss_pred             eeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC-CcEEEEEecCC
Q 048181          248 IKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF-GAVLDTISFEA  293 (310)
Q Consensus       248 l~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~p~  293 (310)
                      |++|+  +|++|++.....        .+.++|++ |+.+..+..|.
T Consensus       231 i~~d~--~G~l~v~~~~~~--------~i~~~d~~~g~~~~~~~~~~  267 (314)
T 1pjx_A          231 MDFDE--DNNLLVANWGSS--------HIEVFGPDGGQPKMRIRCPF  267 (314)
T ss_dssp             EEEBT--TCCEEEEEETTT--------EEEEECTTCBSCSEEEECSS
T ss_pred             eEECC--CCCEEEEEcCCC--------EEEEEcCCCCcEeEEEeCCC
Confidence            99999  999999987653        79999998 99888888774

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.91  E-value=4.4e-22  Score=196.89  Aligned_cols=205  Identities=16%  Similarity=0.186  Sum_probs=163.9

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ++..|.+|++|+ ++.+||+|..+++|+|++.+++. +.+.                   ......|.|||+|...++||
T Consensus        35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-------------------~~g~~~P~GlAvD~~~~~LY   95 (628)
T 4a0p_A           35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-------------------EFGLDYPEGMAVDWLGKNLY   95 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------CSSCSCCCEEEEETTTTEEE
T ss_pred             CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-------------------eCCCCCcceEEEEeCCCEEE
Confidence            467899999997 47899999999999999998753 3322                   12345799999996689999


Q ss_pred             EEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Vad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++|...+ |.++++++...+.+..    ..+..|+++++||..|.||+||.+.                .++|++++++.
T Consensus        96 ~tD~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g~----------------~~~I~r~~~dG  155 (628)
T 4a0p_A           96 WADTGTNRIEVSKLDGQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWGG----------------KPKIDRAAMDG  155 (628)
T ss_dssp             EEETTTTEEEEEETTSTTCEEEEC----SSCCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTS
T ss_pred             EEECCCCEEEEEecCCCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCCC----------------CCEEEEEeCCC
Confidence            9998754 8999998765555542    2467899999998679999999752                36899999986


Q ss_pred             CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      ...+.+.+.+..||||++|++++.||++|+..++|++++++|...   ++  ..++ .|.||++++   ++||++++...
T Consensus       156 ~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l~-~P~glav~~---~~ly~tD~~~~  228 (628)
T 4a0p_A          156 SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIADDLP-HPFGLTQYQ---DYIYWTDWSRR  228 (628)
T ss_dssp             CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECCS-CEEEEEEET---TEEEEEETTTT
T ss_pred             CceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce---EEeeccCC-CceEEEEEC---CEEEEecCCCC
Confidence            667777789999999999999889999999999999999987432   33  4454 699999996   69999998763


Q ss_pred             CCCCCCceeeEEECC-CCcEEEEEe
Q 048181          267 QPAGTPVPIGQRISA-FGAVLDTIS  290 (310)
Q Consensus       267 ~~~~~~~~~v~~~~~-~G~~~~~~~  290 (310)
                              .|.++|. +|+....+.
T Consensus       229 --------~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          229 --------SIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             --------EEEEEETTTCCSCEEEE
T ss_pred             --------EEEEEECCCCCceEEEe
Confidence                    7888885 677555554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.91  E-value=2.7e-22  Score=190.23  Aligned_cols=205  Identities=9%  Similarity=0.029  Sum_probs=154.2

Q ss_pred             CCCCcceEEEccC---CCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           32 KAFGGESIAFEPV---GGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        32 ~~~~Pegia~d~~---G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      +|..|++|++|++   |+|||+|.. ++|++++++++ ...+.                    ....+|.||+++ .+|+
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~--------------------~~~~~P~giavd-~dG~  194 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT--------------------TNIGQCADVNFT-LNGD  194 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC--------------------CCCSCEEEEEEC-TTCC
T ss_pred             ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee--------------------cCCCCccEEEEC-CCCC
Confidence            7889999999984   899999887 99999999644 44332                    245679999998 6788


Q ss_pred             EEEEeCC-----CcEEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181          108 LYIADAY-----SGLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       108 LyVad~~-----~gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      |||+|..     .+++.++..++..  ..+      ..+..|+++++++++|+|||+|...                 ++
T Consensus       195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~------~~~~~P~giavd~~~G~lyv~d~~~-----------------~~  251 (433)
T 4hw6_A          195 MVVVDDQSSDTNTGIYLFTRASGFTERLSL------CNARGAKTCAVHPQNGKIYYTRYHH-----------------AM  251 (433)
T ss_dssp             EEEEECCSCTTSEEEEEECGGGTTCCEEEE------EECSSBCCCEECTTTCCEEECBTTC-----------------SE
T ss_pred             EEEEcCCCCcccceEEEEECCCCeeccccc------cccCCCCEEEEeCCCCeEEEEECCC-----------------CE
Confidence            9999973     2477777654432  111      1467899999999559999999753                 78


Q ss_pred             EEEEcCCCCeE-EEee--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC--CCceee-ec---C----------
Q 048181          181 LLSYNPRSSQV-TVLL--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR--ANSFDI-IN---F----------  241 (310)
Q Consensus       181 l~~~d~~~g~~-~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~--~g~~~~-~~---l----------  241 (310)
                      |+++|++++++ +.+.  .....+++|+++|+|++|||+++.+++|+++++++..  ...... .+   .          
T Consensus       252 V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~  331 (433)
T 4hw6_A          252 ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTG  331 (433)
T ss_dssp             EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGG
T ss_pred             EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccc
Confidence            99999987776 3332  2334567899999999999999999999999987421  111111 11   0          


Q ss_pred             --CCCCceeee---------CCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181          242 --QAKPHNIKR---------NPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISF  291 (310)
Q Consensus       242 --~g~Pdgl~~---------d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~  291 (310)
                        ...|.||++         |.  +|+||||+....        +|.+++++|++......
T Consensus       332 a~~~~P~giav~~n~~y~~dd~--~g~lyvaD~~n~--------~I~~~~~~G~v~t~~G~  382 (433)
T 4hw6_A          332 ARLWGPNQGIFVKNEAYAGEED--EYDFYFCDRDSH--------TVRVLTPEGRVTTYAGR  382 (433)
T ss_dssp             SBCSSEEEEEEEECGGGTTSSC--CEEEEEEETTTT--------EEEEECTTSEEEEEECC
T ss_pred             eEEcCCccEEEEccccccccCC--CCcEEEEECCCC--------EEEEECCCCCEEEEEeC
Confidence              125888999         99  999999999874        89999999987777654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.90  E-value=3.3e-21  Score=176.76  Aligned_cols=230  Identities=12%  Similarity=0.136  Sum_probs=153.8

Q ss_pred             CCcceEEEccCCCEEEEEeC--CC--eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           34 FGGESIAFEPVGGAFYTGVA--DG--RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~--~g--~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ..|++++++++|++|++...  ++  +|++++ +++...+.    ++...         .......|.|+++| ++|+||
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p----~~~~~---------~~~~~~~p~gv~~d-~~g~L~   81 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFP----PQSGN---------AIITFDTVLGIKSD-GNGIVW   81 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESC----CCCSS---------CCCCCSCEEEEEEC-SSSEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCC----CcccC---------cccceeEeeEEEEc-CCCcEE
Confidence            47999999999998777532  34  899998 55443321    11000         11245689999998 689999


Q ss_pred             EEeCC------CcEEEEeCCCCeE-EEeec-cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          110 IADAY------SGLLVVGPNGRLA-TQLAT-GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       110 Vad~~------~gi~~id~~~~~~-~~~~~-~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                      |+|..      ..|+++|++++++ ..+.- .....+..++|++++++++|.+|++|.+..              ..+.|
T Consensus        82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~~~i  147 (343)
T 2qe8_A           82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DKAAL  147 (343)
T ss_dssp             EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GGCEE
T ss_pred             EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CCCeE
Confidence            99975      4699999988774 33321 111234568899999975689999997321              01334


Q ss_pred             EEEcCCCCeEEEeecC------------------------------CCCCceeEEccCCCEEEEEecCCCeEEEEEecC-
Q 048181          182 LSYNPRSSQVTVLLRN------------------------------LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG-  230 (310)
Q Consensus       182 ~~~d~~~g~~~~~~~~------------------------------l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~-  230 (310)
                      +++|+.+++...+.++                              ...||||+++|||++||++++..++|++++.+. 
T Consensus       148 ~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~  227 (343)
T 2qe8_A          148 IRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADL  227 (343)
T ss_dssp             EEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred             EEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHh
Confidence            4444443333222111                              135899999999999999999999999998641 


Q ss_pred             --CCCCceee------ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCCcccccee
Q 048181          231 --PRANSFDI------INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQYSTTPIS  301 (310)
Q Consensus       231 --~~~g~~~~------~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~~~~~~~t  301 (310)
                        ...+..++      .+-.+.||||++|+  +|+||++++..+        .|.++|+ +|++...+..|.   ...++
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~g~pdgia~d~--~G~l~va~~~~~--------~V~~~d~~~G~~~~~~~~~~---~~~p~  294 (343)
T 2qe8_A          228 SNLQLTDAELGSKIERYSEKPICDGISIDK--DHNIYVGDLAHS--------AIGVITSADRAYKLLVTDEK---LSWTD  294 (343)
T ss_dssp             TCTTCCHHHHHTTCEEEEECCSCSCEEECT--TCCEEEEEGGGT--------EEEEEETTTTEEEEEEECGG---GSCEE
T ss_pred             cCCCCChhhhhcceEecccCCCCceEEECC--CCCEEEEccCCC--------eEEEEECCCCCEEEEEECCc---eecCC
Confidence              11111111      11234799999999  999999998874        8999999 899777776652   23455


Q ss_pred             EEEe
Q 048181          302 EVQP  305 (310)
Q Consensus       302 ~~~~  305 (310)
                      .++-
T Consensus       295 ~va~  298 (343)
T 2qe8_A          295 SFNF  298 (343)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            5543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.90  E-value=2.8e-21  Score=174.94  Aligned_cols=220  Identities=20%  Similarity=0.275  Sum_probs=166.9

Q ss_pred             CCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           29 FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      +++....|++++|+++|++|+++..+++|++++++++ ...+..                   .....|.+++++ ++|+
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-------------------~~~~~~~~i~~~-~dg~   99 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-------------------SHKANPAAIKIH-KDGR   99 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-------------------CSSSSEEEEEEC-TTSC
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee-------------------CCCCCcceEEEC-CCCc
Confidence            3445678999999999998889998999999998754 333210                   123468999997 7899


Q ss_pred             EEEEeCCC-----cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          108 LYIADAYS-----GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       108 LyVad~~~-----gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                      |||++...     +|+++|+++++.+.+....  .....|+++++++ +|++|+++....           .....+.|+
T Consensus       100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~i~~d~-~g~l~v~~~~~~-----------~~~~~~~l~  165 (333)
T 2dg1_A          100 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDS-KGGFYFTDFRGY-----------STNPLGGVY  165 (333)
T ss_dssp             EEEEECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECT-TSCEEEEECCCB-----------TTBCCEEEE
T ss_pred             EEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--ccCCcccceEECC-CCCEEEEecccc-----------ccCCCceEE
Confidence            99998654     6999999887765333211  1235789999999 599999986421           012357899


Q ss_pred             EEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce-----ee-ecCC--CCCceeeeCCCC
Q 048181          183 SYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF-----DI-INFQ--AKPHNIKRNPGL  254 (310)
Q Consensus       183 ~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~-----~~-~~l~--g~Pdgl~~d~~~  254 (310)
                      ++|+++++++.+...+..|++|++++||+.||++++..++|++|+++... ...     .. ..++  ..|++|++|+  
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~d~--  242 (333)
T 2dg1_A          166 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGHEGPDSCCIDS--  242 (333)
T ss_dssp             EECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSSSEEEEEEEBT--
T ss_pred             EEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC-cCcccccceEEEecCCCCCCCceEECC--
Confidence            99998777777666677899999999999999999999999999985311 111     11 2222  3799999999  


Q ss_pred             CCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCC
Q 048181          255 LQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEA  293 (310)
Q Consensus       255 dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~  293 (310)
                      +|++|++.....        .+.++|++|+.+..+..|.
T Consensus       243 ~G~l~v~~~~~~--------~v~~~d~~g~~~~~~~~~~  273 (333)
T 2dg1_A          243 DDNLYVAMYGQG--------RVLVFNKRGYPIGQILIPG  273 (333)
T ss_dssp             TCCEEEEEETTT--------EEEEECTTSCEEEEEECTT
T ss_pred             CCCEEEEEcCCC--------EEEEECCCCCEEEEEEcCC
Confidence            999999987652        7999999999999998774

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.90  E-value=1.3e-21  Score=193.37  Aligned_cols=205  Identities=16%  Similarity=0.166  Sum_probs=153.0

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      ++..|.+|++++ ++.+||+|..+++|+|++.++..  +.+.                   ......|.|||+|..+++|
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-------------------~~~~~~P~GlAvD~~~~~l   98 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-------------------VSGLLSPDGLACDWLGEKL   98 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-------------------CSSCSCEEEEEEETTTTEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-------------------eCCCCCcCeEEEEecCCEE
Confidence            467899999997 57899999999999999998752  2221                   1234589999999658999


Q ss_pred             EEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          109 YIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       109 yVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      |++|...+ |.++++++...+.+..    ..+..|++|++||.+|.|||||.+.                .++|++.+++
T Consensus        99 y~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~----------------~~~I~r~~~d  158 (619)
T 3s94_A           99 YWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGE----------------VPKIERAGMD  158 (619)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCCEEEETTTTEEEEEECSS----------------SCEEEEEETT
T ss_pred             EEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCceEEEecCCCeEEEeccCC----------------CCEEEEEECC
Confidence            99998754 8899998765555542    2467899999999779999999753                3689999887


Q ss_pred             CCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e-cCCCCCceeeeCCCCCCcEEEEEec
Q 048181          188 SSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I-NFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       188 ~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~-~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ....+.+. ..+..||||+++++++.||++|+..++|++++++|..  ...+ . .+ ..|.||++++  + +||++++.
T Consensus       159 G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~--~~~~~~~~~-~~P~gi~~~~--~-~ly~td~~  232 (619)
T 3s94_A          159 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN--RQAVVKGSL-PHPFALTLFE--D-ILYWTDWS  232 (619)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE--EC----------CCCEEESS--S-EEEEECTT
T ss_pred             CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc--cEEEEeCCC-CCceEEEEeC--C-EEEEecCC
Confidence            44444444 5788999999999888999999999999999998742  1122 2 33 4699999998  6 99999988


Q ss_pred             CCCCCCCCceeeEEECC-CCcEEEEE
Q 048181          265 TRQPAGTPVPIGQRISA-FGAVLDTI  289 (310)
Q Consensus       265 ~~~~~~~~~~~v~~~~~-~G~~~~~~  289 (310)
                      ..        .|.++|. .|+....+
T Consensus       233 ~~--------~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          233 TH--------SILACNKYTGEGLREI  250 (619)
T ss_dssp             TC--------SEEEEESSSCCCCEEC
T ss_pred             CC--------EEEEEECCCCcccEEE
Confidence            74        6788886 46554443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.89  E-value=1.1e-20  Score=167.52  Aligned_cols=216  Identities=11%  Similarity=0.146  Sum_probs=159.2

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      ++.+..|.+++++++|++|+++..+++|.+++++++... +...          +.    .......|.+++++..+|+|
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~----------~~----~~~~~~~p~~i~~~~~~g~l   91 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC----------GK----RDSQLLYPNRVAVVRNSGDI   91 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCB----------SS----STTCBSSEEEEEEETTTTEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEeccc----------CC----CcccccCceEEEEEcCCCeE
Confidence            456889999999999999999999999999998866432 2110          00    01234579999995478999


Q ss_pred             EEEeC--CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          109 YIADA--YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       109 yVad~--~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      ||++.  ...|.+++.++.....+.    ...+..|+++++++ +|++|+++...                 ++|+++|+
T Consensus        92 ~v~~~~~~~~i~~~d~~g~~~~~~~----~~~~~~~~~i~~~~-~g~l~v~~~~~-----------------~~i~~~~~  149 (286)
T 1q7f_A           92 IVTERSPTHQIQIYNQYGQFVRKFG----ATILQHPRGVTVDN-KGRIIVVECKV-----------------MRVIIFDQ  149 (286)
T ss_dssp             EEEECGGGCEEEEECTTSCEEEEEC----TTTCSCEEEEEECT-TSCEEEEETTT-----------------TEEEEECT
T ss_pred             EEEcCCCCCEEEEECCCCcEEEEec----CccCCCceEEEEeC-CCCEEEEECCC-----------------CEEEEEcC
Confidence            99986  456999997664444332    12456799999999 59999998643                 67999997


Q ss_pred             CCCeEEEee--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEE
Q 048181          187 RSSQVTVLL--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       187 ~~g~~~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      +...+..+.  ..+..|++|+++++|+ ||+++...++|++|+.++..  ...+  .+....|.+|++|+  +|+||++.
T Consensus       150 ~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~--~~~~~~~g~~~~p~~i~~d~--~G~l~v~~  224 (286)
T 1q7f_A          150 NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY--LRQIGGEGITNYPIGVGINS--NGEILIAD  224 (286)
T ss_dssp             TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE--EEEESCTTTSCSEEEEEECT--TCCEEEEE
T ss_pred             CCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCCE--EEEEccCCccCCCcEEEECC--CCCEEEEe
Confidence            643333332  3566899999999986 99999999999999976421  1112  11124699999999  99999999


Q ss_pred             ecCCCCCCCCceeeEEECCCCcEEEEEecCC
Q 048181          263 IITRQPAGTPVPIGQRISAFGAVLDTISFEA  293 (310)
Q Consensus       263 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~  293 (310)
                      ....       ..+.+++++|+.+..+....
T Consensus       225 ~~~~-------~~i~~~~~~g~~~~~~~~~~  248 (286)
T 1q7f_A          225 NHNN-------FNLTIFTQDGQLISALESKV  248 (286)
T ss_dssp             CSSS-------CEEEEECTTSCEEEEEEESS
T ss_pred             CCCC-------EEEEEECCCCCEEEEEcccC
Confidence            7651       26889999999888887653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=4.4e-21  Score=181.76  Aligned_cols=206  Identities=10%  Similarity=0.098  Sum_probs=154.6

Q ss_pred             CCCCCCcceEEEcc--CCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181           30 PPKAFGGESIAFEP--VGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR  106 (310)
Q Consensus        30 ~~~~~~Pegia~d~--~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g  106 (310)
                      .++|..|.+|++||  +|+||++|.. ++|++++++++. ..+.                    .....|.+|+++ .+|
T Consensus       133 ~~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~--------------------~~~~~P~~ia~d-~~G  190 (430)
T 3tc9_A          133 CGGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVY--------------------SGLSKVRTICWT-HEA  190 (430)
T ss_dssp             CBCCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEE--------------------CCCSCEEEEEEC-TTS
T ss_pred             ccCCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEe--------------------cCCCCcceEEEe-CCC
Confidence            34688999999996  4888888876 999999998754 3332                    245689999998 566


Q ss_pred             e-EEEEeCCC-----cEEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          107 Q-LYIADAYS-----GLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       107 ~-LyVad~~~-----gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      + |||+|...     .++.++.++...  ..+.      .+.+|+++++++++|+|||+|...                 
T Consensus       191 ~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~~-----------------  247 (430)
T 3tc9_A          191 DSMIITNDQNNNDRPNNYILTRESGFKVITELT------KGQNCNGAETHPINGELYFNSWNA-----------------  247 (430)
T ss_dssp             SEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETTT-----------------
T ss_pred             CEEEEEeCCCCcccceEEEEeCCCceeeeeeec------cCCCceEEEEeCCCCEEEEEECCC-----------------
Confidence            5 99999742     367777665432  2221      367899999999559999999753                 


Q ss_pred             ceEEEEcCCCCeEEEee--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce---ee-ecC-----------
Q 048181          179 GRLLSYNPRSSQVTVLL--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF---DI-INF-----------  241 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~---~~-~~l-----------  241 (310)
                      ++|++++++++....+.  .....|+||+++|+|++|||++..+++|+++++++.. +..   .. .+.           
T Consensus       248 ~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~-~~~~~~~~~ag~~g~~g~~dg~~  326 (430)
T 3tc9_A          248 GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKT-KRLTTPYIVCGQQGAKDWVDGVG  326 (430)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEECCCEEEEECTTCBCCBCEEG
T ss_pred             CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccc-ccccceEEEeccCCCCCCCCCCC
Confidence            78999999877653332  2346799999999999999999999999999988631 111   11 110           


Q ss_pred             ----CCCCc-eeee--------CCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEec
Q 048181          242 ----QAKPH-NIKR--------NPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISF  291 (310)
Q Consensus       242 ----~g~Pd-gl~~--------d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~  291 (310)
                          ...|. |+++        |+  +|+||+++....        +|.+++++|++......
T Consensus       327 ~~a~~~~P~~gv~v~~~~y~~~D~--~g~lyvaD~~n~--------~I~~i~~~G~v~~~~g~  379 (430)
T 3tc9_A          327 KKARMHAPRQGTFVKNPAYKGSSD--EYDFYFCDRENH--------CIRILTPQGRVTTFAGR  379 (430)
T ss_dssp             GGCBBSSEEEEEEEECGGGTTSSC--CEEEEEEEGGGT--------EEEEECTTSEEEEEEEC
T ss_pred             cceEeCCCcceEEEccccccccCC--CCeEEEEECCCc--------EEEEECCCCcEEEEEeC
Confidence                12587 8988        56  799999999874        89999999988877764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.88  E-value=1.7e-20  Score=189.40  Aligned_cols=206  Identities=15%  Similarity=0.165  Sum_probs=157.8

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCc-----eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDG-----FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      .+..|.+|++|. ++.|||+|..+++|++++.++.     .+.+.                   ......|.|||+|...
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-------------------~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------------SRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------------------CSSCSCCCEEEEETTT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-------------------ecCCCCcceeeeeecC
Confidence            467899999997 5789999999999999998863     11211                   1245689999999667


Q ss_pred             CeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          106 RQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       106 g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      ++||++|...+ |.++++++...+++..    ..+..|++||+|+..|+|||||.+.                .++|+++
T Consensus       483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~----~~l~~P~gIaVDp~~g~LYwtD~g~----------------~~~I~~~  542 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKG  542 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEE
T ss_pred             CcEEEEecCCCeEEEEeCCCCeEEEEEe----CCCCCcceEEEecCCCCEEEecCCC----------------CCeEEEE
Confidence            79999998754 9999998876655543    2456799999999779999999753                2579999


Q ss_pred             cCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e---cCCCCCceeeeCCCCCCcEE
Q 048181          185 NPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I---NFQAKPHNIKRNPGLLQTFW  259 (310)
Q Consensus       185 d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~---~l~g~Pdgl~~d~~~dG~l~  259 (310)
                      +.+....+++. ..+..|+||+++++++.||++|...++|++++++|..  ...+ .   .++ .|.+|+++.   ++||
T Consensus       543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~--~~~v~~~~~~l~-~P~glav~~---~~lY  616 (791)
T 3m0c_C          543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--RKTILEDEKRLA-HPFSLAVFE---DKVF  616 (791)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEEECTTTTS-SEEEEEEET---TEEE
T ss_pred             ecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc--eEEEecCCCccC-CCCEEEEeC---CEEE
Confidence            88754444444 5788999999998888999999999999999998752  2222 2   233 688999976   6999


Q ss_pred             EEEecCCCCCCCCceeeEEEC-CCCcEEEEEe
Q 048181          260 EAAIITRQPAGTPVPIGQRIS-AFGAVLDTIS  290 (310)
Q Consensus       260 va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~  290 (310)
                      ++++...        .|.++| .+|+.+..+.
T Consensus       617 wtD~~~~--------~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          617 WTDIINE--------AIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEETTTT--------EEEEEETTTCCCCEEEE
T ss_pred             EEECCCC--------EEEEEeCCCCcceEEee
Confidence            9998874        788888 4787666664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.88  E-value=3.4e-22  Score=200.17  Aligned_cols=214  Identities=14%  Similarity=0.110  Sum_probs=157.3

Q ss_pred             CCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           32 KAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        32 ~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      .+..|++|+|+++ +.|||+|..+++|++++.++......              ...........|.||++|..+++||+
T Consensus       404 ~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~--------------~~~~i~~~~~~P~glavD~~~g~LY~  469 (699)
T 1n7d_A          404 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--------------YDTVISRDIQAPDGLAVDWIHSNIYW  469 (699)
T ss_dssp             CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC--------------CCCBCCSCC--CCCEECCCSSSBCEE
T ss_pred             cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc--------------eEEEEeCCCCCcceEEEEeeCCcEEE
Confidence            4678999999974 68999999999999999875210000              00001123457999999866889999


Q ss_pred             EeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          111 ADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       111 ad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      +|... .|.++++++...+.+..    ..+..|+++++|+.+|.||+||...                .++|++++.+..
T Consensus       470 tD~~~~~I~v~d~dg~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~~----------------~~~I~~~~~dG~  529 (699)
T 1n7d_A          470 TDSVLGTVSVADTKGVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGV  529 (699)
T ss_dssp             CCTTTSCEEEEBSSSCCEEEECC----CSSCCCCCEECCSSSSCCEECCCSS----------------SCCEEBCCSSSC
T ss_pred             EeccCCeEEEEecCCCceEEEEe----CCCCCcceEEEccCCCcEEEcccCC----------------CCeEEEEeCCCC
Confidence            99764 59999998766555532    2356799999999779999999642                267888887643


Q ss_pred             eEEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e--cCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          190 QVTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I--NFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       190 ~~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~--~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ..+++ ...+..||||+++++++.||++|+..++|++++++|..  ...+ .  .....|+||++++  + .||++++..
T Consensus       530 ~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~--~~~~~~~~~~~~~P~glavd~--~-~lywtd~~~  604 (699)
T 1n7d_A          530 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--RKTILEDEKRLAHPFSLAVFE--D-KVFWTDIIN  604 (699)
T ss_dssp             CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC--CEEECCCSSSCSSCCCCEEET--T-EEEEECSTT
T ss_pred             CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc--eEEEEecCCcCCCceEeEEEC--C-EEEEEeCCC
Confidence            33333 35688999999999988899999999999999998632  2222 1  1224799999998  5 788888776


Q ss_pred             CCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          266 RQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       266 ~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                      .        .|.++++ +|+.+..|..+
T Consensus       605 ~--------~V~~~d~~~G~~~~~i~~~  624 (699)
T 1n7d_A          605 E--------AIFSANRLTGSDVNLLAEN  624 (699)
T ss_dssp             T--------CEEEEETTTEEEEECCCTT
T ss_pred             C--------eEEEEEccCCCceEEeecC
Confidence            3        7999997 69998888664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.88  E-value=3e-20  Score=183.51  Aligned_cols=200  Identities=16%  Similarity=0.139  Sum_probs=155.4

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ++..|.++++|+ +|.+||+|..+++|+|++++|+ .+.+.                   ......|.|||+|...++||
T Consensus       347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-------------------~~~~~~p~GlAvD~~~~~lY  407 (619)
T 3s94_A          347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-------------------TAQIAHPDGIAVDWVARNLY  407 (619)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------CSSCSCCCEEEEETTTTEEE
T ss_pred             ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-------------------ECCCCCcCceEEecccCcEE
Confidence            467899999997 5789999999999999999874 33332                   12346899999996689999


Q ss_pred             EEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Vad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++|...+ |.++++++...+.+..    ..+..|+++++||..|.+||||.+.                .++|++.+.+.
T Consensus       408 ~tD~~~~~I~v~~~~G~~~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g~----------------~~~I~r~~~dG  467 (619)
T 3s94_A          408 WTDTGTDRIEVTRLNGTMRKILIS----EDLEEPRAIVLDPMVGYMYWTDWGE----------------IPKIERAALDG  467 (619)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEC----TTCCSEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTS
T ss_pred             EEeCCCCcEEEEeCCCCeEEEEEE----CCCCCeeeEEEEcCCCcEEEecCCC----------------CCEEEEEccCC
Confidence            9998754 8888888765555542    2578899999999669999999753                36788988764


Q ss_pred             CeEEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          189 SQVTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       189 g~~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ...+.+ ...+..||||++|++++.||++|+..++|++++++|..  ...+  .++ ..|.||+++.  + +||++++..
T Consensus       468 ~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~--~~~~~~~~l-~~P~glav~~--~-~ly~tD~~~  541 (619)
T 3s94_A          468 SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG--RRVLVEDKI-PHIFGFTLLG--D-YVYWTDWQR  541 (619)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEEECCC-CSSCCEEEET--T-EEEEECTTS
T ss_pred             CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc--eEEEeccCC-CCcEEEEEEC--C-EEEEeecCC
Confidence            334444 34689999999999888999999999999999998752  2223  334 4699999997  4 999999987


Q ss_pred             CCCCCCCceeeEEECC-CCc
Q 048181          266 RQPAGTPVPIGQRISA-FGA  284 (310)
Q Consensus       266 ~~~~~~~~~~v~~~~~-~G~  284 (310)
                      +        .|.+++. +|+
T Consensus       542 ~--------~I~~~~k~~g~  553 (619)
T 3s94_A          542 R--------SIERVHKRSAE  553 (619)
T ss_dssp             S--------CEEEEESSSCC
T ss_pred             C--------eEEEEEcCCCc
Confidence            4        6888875 453

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.88  E-value=2.3e-20  Score=175.63  Aligned_cols=208  Identities=14%  Similarity=0.036  Sum_probs=152.9

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      +|..|.+|++|++|+||++|..+++|++++++++. ..+..                    ....|. +++++..+.||+
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--------------------~~~~~~-ia~~~~g~~l~~  187 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--------------------GFKGGK-PAVTKDKQRVYS  187 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--------------------TCCBCB-CEECTTSSEEEE
T ss_pred             ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--------------------cCCCCc-eeEecCCCcEEE
Confidence            57899999999999999999999999999998654 33321                    123566 899855557899


Q ss_pred             EeCCC--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          111 ADAYS--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       111 ad~~~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++...  .|++++++++................|+++++++++|+||++|.                  +++|+++|+++
T Consensus       188 ~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~  249 (409)
T 3hrp_A          188 IGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKT  249 (409)
T ss_dssp             EBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTT
T ss_pred             EecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCC
Confidence            98754  69999987654322221111224578999999996699999774                  36899999987


Q ss_pred             CeEEEe----ecCCCC--Cc-eeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecC---------------CCCCc
Q 048181          189 SQVTVL----LRNLTG--PA-GVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINF---------------QAKPH  246 (310)
Q Consensus       189 g~~~~~----~~~l~~--pn-GIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l---------------~g~Pd  246 (310)
                      +..+.+    ..+...  |. +|+++|+++.||+++..+++|++++.++.   ...+.+-               ...|.
T Consensus       250 ~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~  326 (409)
T 3hrp_A          250 QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPN  326 (409)
T ss_dssp             CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred             CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence            766554    222222  44 99999976789999999999999988753   1111110               13599


Q ss_pred             eeeeCCCCCCcEEEEEe-cCCCCCCCCceeeEEEC-CCCcEEEEEec
Q 048181          247 NIKRNPGLLQTFWEAAI-ITRQPAGTPVPIGQRIS-AFGAVLDTISF  291 (310)
Q Consensus       247 gl~~d~~~dG~l~va~~-~~~~~~~~~~~~v~~~~-~~G~~~~~~~~  291 (310)
                      ||++|+  +|+||+++. ...        +|.+++ ++|++......
T Consensus       327 gia~d~--dG~lyvad~~~~~--------~I~~~~~~~G~v~~~~g~  363 (409)
T 3hrp_A          327 GMTVDE--DGNFYIVDGFKGY--------CLRKLDILDGYVSTVAGQ  363 (409)
T ss_dssp             EEEECT--TCCEEEEETTTTC--------EEEEEETTTTEEEEEEEC
T ss_pred             EEEEeC--CCCEEEEeCCCCC--------EEEEEECCCCEEEEEeCC
Confidence            999999  999999998 663        899999 88987766654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.88  E-value=1.7e-20  Score=164.34  Aligned_cols=199  Identities=20%  Similarity=0.281  Sum_probs=145.3

Q ss_pred             CcceEEEccCCCEEE-EEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           35 GGESIAFEPVGGAFY-TGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~-~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      .|++++++++|++|+ ++..+++|+++++++......                  .......|.+|+++ ++|+|||++.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~------------------~~~~~~~p~~i~~~-~~g~l~v~~~   85 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------PFNGLYQPQGLAVD-GAGTVYVTDF   85 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC------------------CCCSCCSCCCEEEC-TTCCEEEEET
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE------------------eeCCcCCcceeEEC-CCCCEEEEcC
Confidence            999999999999888 667889999998875432211                  01223578999998 6889999998


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ..+|++++++++....+.    ...+..|+++++++ +|++|+++...                 ++|++++..+.....
T Consensus        86 ~~~i~~~d~~~~~~~~~~----~~~~~~p~~i~~~~-~g~l~v~~~~~-----------------~~i~~~~~~~~~~~~  143 (270)
T 1rwi_B           86 NNRVVTLAAGSNNQTVLP----FDGLNYPEGLAVDT-QGAVYVADRGN-----------------NRVVKLAAGSKTQTV  143 (270)
T ss_dssp             TTEEEEECTTCSCCEECC----CCSCSSEEEEEECT-TCCEEEEEGGG-----------------TEEEEECTTCCSCEE
T ss_pred             CCEEEEEeCCCceEeeee----cCCcCCCcceEECC-CCCEEEEECCC-----------------CEEEEEECCCceeEe
Confidence            556999999876554332    12346789999999 59999998642                 678888865443332


Q ss_pred             e-ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCCCCC
Q 048181          194 L-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQPAG  270 (310)
Q Consensus       194 ~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~  270 (310)
                      . ...+..|++|+++++|+ ||+++..+++|++|+.++..  ....  ..+ ..|.+|++|+  +|+||++....+    
T Consensus       144 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~-~~p~~i~~d~--~g~l~v~~~~~~----  213 (270)
T 1rwi_B          144 LPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN--QVVLPFTDI-TAPWGIAVDE--AGTVYVTEHNTN----  213 (270)
T ss_dssp             CCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCC--EEECCCSSC-CSEEEEEECT--TCCEEEEETTTS----
T ss_pred             eccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCc--eEeecccCC-CCceEEEECC--CCCEEEEECCCC----
Confidence            2 23456899999999997 99999999999999876531  1111  222 4699999999  999999997653    


Q ss_pred             CCceeeEEECCCCcEEEE
Q 048181          271 TPVPIGQRISAFGAVLDT  288 (310)
Q Consensus       271 ~~~~~v~~~~~~G~~~~~  288 (310)
                          .+.+++++|+....
T Consensus       214 ----~v~~~~~~~~~~~~  227 (270)
T 1rwi_B          214 ----QVVKLLAGSTTSTV  227 (270)
T ss_dssp             ----CEEEECTTCSCCEE
T ss_pred             ----cEEEEcCCCCccee
Confidence                67888887765544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.88  E-value=2e-19  Score=159.22  Aligned_cols=231  Identities=13%  Similarity=0.136  Sum_probs=168.2

Q ss_pred             eeeecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee
Q 048181           18 VFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF   97 (310)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~   97 (310)
                      .|.+..++++++|.....|+++++|++|++|+++..+++|.++++++....+..                  ......|.
T Consensus         4 ~w~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~   65 (300)
T 2qc5_A            4 AWMNFYLEEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEV------------------PTPDAKVM   65 (300)
T ss_dssp             GGGSEEEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEC------------------SSTTCCEE
T ss_pred             cceeeeEEEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEEC------------------CCCCCcce
Confidence            355667888999988889999999999998888888899999998855544321                  12245799


Q ss_pred             eEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181           98 GLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      +|+++ ++|++|+++.. .+|+++|++ ++...+....   ....|+++++++ +|++|+++...               
T Consensus        66 ~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~-~g~l~v~~~~~---------------  124 (300)
T 2qc5_A           66 CLIVS-SLGDIWFTENGANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGL-NGDIWFTQLNG---------------  124 (300)
T ss_dssp             EEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECS-TTCEEEEETTT---------------
T ss_pred             eEEEC-CCCCEEEEecCCCeEEEECCC-CCeEEecCCC---CCCCCccceECC-CCCEEEEccCC---------------
Confidence            99998 78999999875 459999988 5554442211   235789999999 59999998642               


Q ss_pred             CCceEEEEcCCCCeEEEee--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCC
Q 048181          177 STGRLLSYNPRSSQVTVLL--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGL  254 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~  254 (310)
                        +.|+++|++ ++.....  .....|++|+++++|+ ||+++...++|++|+.++.. .......-...|.+|++|+  
T Consensus       125 --~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~d~--  197 (300)
T 2qc5_A          125 --DRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNTGKL-EEYPLPTNAAAPVGITSGN--  197 (300)
T ss_dssp             --TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTCCE-EEEECSSTTCCEEEEEECT--
T ss_pred             --CeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECCCCcE-EEeeCCCCCCCcceEEECC--
Confidence              579999987 6665432  2456899999999998 99999999999999874321 1111111124699999999  


Q ss_pred             CCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEEe
Q 048181          255 LQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQP  305 (310)
Q Consensus       255 dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~  305 (310)
                      +|+||++.....        .+.+++++|++.. +..+.+.  ..+..++.
T Consensus       198 ~g~l~v~~~~~~--------~i~~~~~~g~~~~-~~~~~~~--~~~~~i~~  237 (300)
T 2qc5_A          198 DGALWFVEIMGN--------KIGRITTTGEISE-YDIPTPN--ARPHAITA  237 (300)
T ss_dssp             TSSEEEEETTTT--------EEEEECTTCCEEE-EECSSTT--CCEEEEEE
T ss_pred             CCCEEEEccCCC--------EEEEEcCCCcEEE-EECCCCC--CCceEEEE
Confidence            999999987652        6888888887655 3344322  24455544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.86  E-value=5e-20  Score=167.64  Aligned_cols=163  Identities=14%  Similarity=0.217  Sum_probs=120.8

Q ss_pred             CCCCCcceEEEccCCCEEEEEeCC------------------------CeEEEEECC-CceEEeeeecCCCCccccCCCc
Q 048181           31 PKAFGGESIAFEPVGGAFYTGVAD------------------------GRILKYQAP-DGFTDFAFTTPTRSKAVCDGTT   85 (310)
Q Consensus        31 ~~~~~Pegia~d~~G~l~~~d~~~------------------------g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~   85 (310)
                      .++..|.+++++++|++|+++..+                        ++|++++++ ++.....            +  
T Consensus        21 ~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~------------~--   86 (329)
T 3fvz_A           21 LLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS------------G--   86 (329)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE------------C--
T ss_pred             eecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc------------C--
Confidence            467789999999999999888776                        468899886 4443211            0  


Q ss_pred             cccCCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCCC--eEEEeeccC----CCccccCccceEEeCCCCeEEEEc
Q 048181           86 NLDLGPICRRTFGLALHYATRQLYIADAYS-GLLVVGPNGR--LATQLATGA----EGQAFHFLDGLDVDQGTGVVYFTD  158 (310)
Q Consensus        86 ~~~~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~~--~~~~~~~~~----~g~~~~~pndvavd~~~G~lyvtd  158 (310)
                          ......|.||+++ ++|+|||+|... .|+++++++.  .+..+....    ....+..|+++++++++|++||+|
T Consensus        87 ----~~~~~~p~gia~d-~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d  161 (329)
T 3fvz_A           87 ----KNLFYLPHGLSID-TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD  161 (329)
T ss_dssp             ----TTTCSSEEEEEEC-TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred             ----CCccCCceEEEEC-CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence                1234689999998 789999999865 4999998875  344443211    123577899999999459999999


Q ss_pred             CCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee-----------cCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          159 ASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL-----------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~-----------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                      +..                +++|.++|++ ++.....           ..+..|+||+++++++.|||++..+++|.+|+
T Consensus       162 ~~~----------------~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~  224 (329)
T 3fvz_A          162 GYC----------------NSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFK  224 (329)
T ss_dssp             CSS----------------CCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCC----------------CCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEE
Confidence            621                2578888865 4433322           23567999999999667999999999999999


Q ss_pred             ec
Q 048181          228 LR  229 (310)
Q Consensus       228 ~~  229 (310)
                      .+
T Consensus       225 ~~  226 (329)
T 3fvz_A          225 TD  226 (329)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.86  E-value=9.9e-19  Score=154.67  Aligned_cols=213  Identities=13%  Similarity=0.205  Sum_probs=159.0

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      .++.+.++..+..|.+++++++|++|+++..+++|++++++++...+..                  ......|.+++++
T Consensus        51 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~------------------~~~~~~~~~i~~~  112 (300)
T 2qc5_A           51 RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPL------------------PQPDSGPYGITEG  112 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEC------------------SSTTCCEEEEEEC
T ss_pred             ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecC------------------CCCCCCCccceEC
Confidence            4455666766678999999999998888887899999998865544321                  1123579999998


Q ss_pred             cCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          103 YATRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       103 ~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                       ++|+||+++.. .+|++++++ ++...+..  . .....|+++++++ +|++|+++...                 +.|
T Consensus       113 -~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~--~-~~~~~~~~i~~d~-~g~l~v~~~~~-----------------~~i  169 (300)
T 2qc5_A          113 -LNGDIWFTQLNGDRIGKLTAD-GTIYEYDL--P-NKGSYPAFITLGS-DNALWFTENQN-----------------NSI  169 (300)
T ss_dssp             -STTCEEEEETTTTEEEEECTT-SCEEEEEC--S-STTCCEEEEEECT-TSSEEEEETTT-----------------TEE
T ss_pred             -CCCCEEEEccCCCeEEEECCC-CCEEEccC--C-CCCCCceeEEECC-CCCEEEEecCC-----------------CeE
Confidence             78999999874 469999998 55544321  1 1346789999999 59999998642                 579


Q ss_pred             EEEcCCCCeEEEee--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCCCC
Q 048181          182 LSYNPRSSQVTVLL--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGLLQ  256 (310)
Q Consensus       182 ~~~d~~~g~~~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~dG  256 (310)
                      +++|+ +++.....  .....|.+|+++++|+ ||+++...++|++|+.++    ....   ..-...|.+|++|+  +|
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~--~g  241 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTTG----EISEYDIPTPNARPHAITAGK--NS  241 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECS--TT
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCCC----cEEEEECCCCCCCceEEEECC--CC
Confidence            99998 46655432  3456899999999986 999999999999998743    2221   11124699999999  99


Q ss_pred             cEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCC
Q 048181          257 TFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEA  293 (310)
Q Consensus       257 ~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~  293 (310)
                      +||++....        ..+.+++++|++. .+..+.
T Consensus       242 ~l~v~~~~~--------~~i~~~~~~g~~~-~~~~~~  269 (300)
T 2qc5_A          242 EIWFTEWGA--------NQIGRITNDNTIQ-EYQLQT  269 (300)
T ss_dssp             CEEEEETTT--------TEEEEECTTSCEE-EEECCS
T ss_pred             CEEEeccCC--------CeEEEECCCCcEE-EEECCc
Confidence            999999764        2799999998765 455553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.85  E-value=1.6e-18  Score=153.25  Aligned_cols=225  Identities=12%  Similarity=0.188  Sum_probs=162.5

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY  103 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~  103 (310)
                      +..+.++.....|.+++++++|++|+++..+++|++++++++...+..                  ......|.+|+++ 
T Consensus        47 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~------------------~~~~~~~~~i~~~-  107 (299)
T 2z2n_A           47 ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTL------------------PNPDSAPYGITEG-  107 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEC------------------SSTTCCEEEEEEC-
T ss_pred             eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeC------------------CCcCCCceeeEEC-
Confidence            445555544568999999999998888877899999998866544431                  0134579999998 


Q ss_pred             CCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          104 ATRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       104 ~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                      ++|+||+++.. .+|+++++ +++...+...   .....|+++++++ +|++|+++..                 .+.|+
T Consensus       108 ~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~---~~~~~~~~i~~~~-~g~l~v~~~~-----------------~~~i~  165 (299)
T 2z2n_A          108 PNGDIWFTEMNGNRIGRITD-DGKIREYELP---NKGSYPSFITLGS-DNALWFTENQ-----------------NNAIG  165 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECT-TCCEEEEECS---STTCCEEEEEECT-TSCEEEEETT-----------------TTEEE
T ss_pred             CCCCEEEEecCCceEEEECC-CCCEEEecCC---CCCCCCceEEEcC-CCCEEEEeCC-----------------CCEEE
Confidence            78999999865 46999998 4455443221   1345789999999 5999999854                 26799


Q ss_pred             EEcCCCCeEEEe--ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecC---CCCCceeeeCCCCCCc
Q 048181          183 SYNPRSSQVTVL--LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINF---QAKPHNIKRNPGLLQT  257 (310)
Q Consensus       183 ~~d~~~g~~~~~--~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l---~g~Pdgl~~d~~~dG~  257 (310)
                      ++|+ +++++..  ......|++|+++++|+ ||+++...++|++|+.++    ......+   ...|.+|++|+  +|+
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~--~g~  237 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTSG----EITEFKIPTPNARPHAITAGA--GID  237 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECS--TTC
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCCC----cEEEEECCCCCCCceeEEECC--CCC
Confidence            9998 6766553  23456799999999987 999999899999998732    2221111   24699999999  999


Q ss_pred             EEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEEecCC
Q 048181          258 FWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGG  308 (310)
Q Consensus       258 l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~~~  308 (310)
                      +|++....        ..+.+++++|++ ..+..+.+.  ..+..++..++
T Consensus       238 l~v~~~~~--------~~i~~~d~~g~~-~~~~~~~~~--~~~~~i~~~~g  277 (299)
T 2z2n_A          238 LWFTEWGA--------NKIGRLTSNNII-EEYPIQIKS--AEPHGICFDGE  277 (299)
T ss_dssp             EEEEETTT--------TEEEEEETTTEE-EEEECSSSS--CCEEEEEECSS
T ss_pred             EEEeccCC--------ceEEEECCCCce-EEEeCCCCC--CccceEEecCC
Confidence            99998664        279999998864 455566432  34555554333

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.85  E-value=2.7e-18  Score=151.77  Aligned_cols=223  Identities=12%  Similarity=0.179  Sum_probs=162.4

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      +++++++|.....|.++++|++|++|+++..+++|.++++++....+..                  ......|.+|+++
T Consensus         4 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~i~~~   65 (299)
T 2z2n_A            4 KLQELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPL------------------PTPDAKVMCLTIS   65 (299)
T ss_dssp             EEEEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEC------------------SSTTCCEEEEEEC
T ss_pred             eEEEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecC------------------CcccCceeeEEEC
Confidence            4677888887889999999999998888777899999998854444321                  1123579999998


Q ss_pred             cCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          103 YATRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       103 ~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                       ++|++|+++.. .+|+++++++ +.+.+...   .....|+++++++ +|++|+++...                 +.|
T Consensus        66 -~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~---~~~~~~~~i~~~~-~g~l~v~~~~~-----------------~~i  122 (299)
T 2z2n_A           66 -SDGEVWFTENAANKIGRITKKG-IIKEYTLP---NPDSAPYGITEGP-NGDIWFTEMNG-----------------NRI  122 (299)
T ss_dssp             -TTSCEEEEETTTTEEEEECTTS-CEEEEECS---STTCCEEEEEECT-TSCEEEEETTT-----------------TEE
T ss_pred             -CCCCEEEeCCCCCeEEEECCCC-cEEEEeCC---CcCCCceeeEECC-CCCEEEEecCC-----------------ceE
Confidence             78999999875 4599999874 44444311   1345789999999 59999998642                 679


Q ss_pred             EEEcCCCCeEEEee--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCCCC
Q 048181          182 LSYNPRSSQVTVLL--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGLLQ  256 (310)
Q Consensus       182 ~~~d~~~g~~~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~dG  256 (310)
                      +++|+ +++.....  .....|++|+++++|+ ||+++...+.|++++.+    +....   ......|.+|++|+  +|
T Consensus       123 ~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~~~--~g  194 (299)
T 2z2n_A          123 GRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITES----GDITEFKIPTPASGPVGITKGN--DD  194 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT----CCEEEEECSSTTCCEEEEEECT--TS
T ss_pred             EEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcCC----CcEEEeeCCCCCCcceeEEECC--CC
Confidence            99998 56655432  2456799999999986 99999989999999873    22221   11123689999999  99


Q ss_pred             cEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEEe
Q 048181          257 TFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQP  305 (310)
Q Consensus       257 ~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~  305 (310)
                      +||++.....        .+.+++++|++.. +..+..  ...+..++.
T Consensus       195 ~l~v~~~~~~--------~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~  232 (299)
T 2z2n_A          195 ALWFVEIIGN--------KIGRITTSGEITE-FKIPTP--NARPHAITA  232 (299)
T ss_dssp             SEEEEETTTT--------EEEEECTTCCEEE-EECSST--TCCEEEEEE
T ss_pred             CEEEEccCCc--------eEEEECCCCcEEE-EECCCC--CCCceeEEE
Confidence            9999987542        6888888877543 445532  134555544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=4.5e-19  Score=169.46  Aligned_cols=211  Identities=11%  Similarity=0.116  Sum_probs=153.2

Q ss_pred             CCCCCCcceEEEcc--CCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEE-----
Q 048181           30 PPKAFGGESIAFEP--VGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL-----  101 (310)
Q Consensus        30 ~~~~~~Pegia~d~--~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~-----  101 (310)
                      .++|..|.+|++||  +++||+++..+++|++++++++. .++...+                .....+|.+|++     
T Consensus       135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~----------------~~~~~~p~~ia~~~~~~  198 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN----------------TIPTNRIRSIAFNKKIE  198 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT----------------TSSCSBEEEEEECCCBT
T ss_pred             ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC----------------ccccCCCcEEEEeeccc
Confidence            34567899999997  37899998888899999988754 4433110                113457999999     


Q ss_pred             --ecCCC-eEEEEeCCC-------cEEEEeCCC-CeE------EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccC
Q 048181          102 --HYATR-QLYIADAYS-------GLLVVGPNG-RLA------TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYD  164 (310)
Q Consensus       102 --d~~~g-~LyVad~~~-------gi~~id~~~-~~~------~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~  164 (310)
                        + .+| .|||+|...       .++.++++. +..      ..+.      .+..|+++++++++|.||++|...   
T Consensus       199 ~~d-~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~~---  268 (496)
T 3kya_A          199 GYA-DEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYEK---  268 (496)
T ss_dssp             TTB-CTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETTT---
T ss_pred             ccC-CCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECCC---
Confidence              8 455 499998764       277886544 222      1221      356899999999779999999753   


Q ss_pred             ccceeEeeeecCCCceEEEEcCC-------CCeE------------EEe--ecCCCCCceeEEccCCCEEEEEecCCCeE
Q 048181          165 FRTIVKLNITNDSTGRLLSYNPR-------SSQV------------TVL--LRNLTGPAGVAISVDSSFLLVSEFTGNRT  223 (310)
Q Consensus       165 ~~~~~~~~~~~~~~G~l~~~d~~-------~g~~------------~~~--~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I  223 (310)
                                    ++|+++|++       ++.+            +.+  ...-..|.+||++|+|++|||+|+.+++|
T Consensus       269 --------------g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I  334 (496)
T 3kya_A          269 --------------GQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYF  334 (496)
T ss_dssp             --------------TEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             --------------CEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEE
Confidence                          789999987       5553            121  22345789999999999999999999999


Q ss_pred             EEEEecCCCCCce---e-eec---CC------------CCCc-eeeeC-------CCCCCcEEEEEecCCCCCCCCceee
Q 048181          224 LKYWLRGPRANSF---D-IIN---FQ------------AKPH-NIKRN-------PGLLQTFWEAAIITRQPAGTPVPIG  276 (310)
Q Consensus       224 ~~~~~~~~~~g~~---~-~~~---l~------------g~Pd-gl~~d-------~~~dG~l~va~~~~~~~~~~~~~~v  276 (310)
                      +++++++.. +..   . +++   ..            ..|. +++++       .  +|+||||+....        +|
T Consensus       335 ~kid~dg~~-~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~--~g~lyVaD~~N~--------rI  403 (496)
T 3kya_A          335 MRSDYDEIK-KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE--EYDFYFVDRLNF--------CV  403 (496)
T ss_dssp             EEEEEETTT-TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC--CEEEEEEEGGGT--------EE
T ss_pred             EEEecCCCc-ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccC--CCeEEEEECCCC--------EE
Confidence            999988642 211   1 111   11            2588 88887       6  899999999874        89


Q ss_pred             EEECCCCcEEEEEec
Q 048181          277 QRISAFGAVLDTISF  291 (310)
Q Consensus       277 ~~~~~~G~~~~~~~~  291 (310)
                      .+++++|++......
T Consensus       404 r~i~~~G~v~TiaG~  418 (496)
T 3kya_A          404 RKVTPEGIVSTYAGR  418 (496)
T ss_dssp             EEECTTCBEEEEEES
T ss_pred             EEEeCCCCEEEEecc
Confidence            999999987776654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.84  E-value=5.4e-19  Score=174.79  Aligned_cols=215  Identities=13%  Similarity=0.133  Sum_probs=158.3

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ++..+.++++|+ ++.+||+|..+++|+|+..+|.. +.+... ..            ........|.|||+|...++||
T Consensus       338 ~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~-~~------------~~~~~~~~p~glAvD~~~~nLY  404 (628)
T 4a0p_A          338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS-SV------------PSQNLEIQPYDLSIDIYSRYIY  404 (628)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---------------------CCCEEEEEEETTTTEEE
T ss_pred             hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEc-cc------------ccccccCCcceEEeeccCCeEE
Confidence            466788999997 47899999999999999988653 222210 00            0001356899999996578899


Q ss_pred             EEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Vad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++|...+ |.+++.++.....+...    .+..|++++++|..|.+||||....               .++|++.+++.
T Consensus       405 ~td~~~~~I~v~~~~G~~~~~l~~~----~l~~Pr~iavdp~~g~ly~tD~g~~---------------~~~I~r~~~dG  465 (628)
T 4a0p_A          405 WTCEATNVINVTRLDGRSVGVVLKG----EQDRPRAVVVNPEKGYMYFTNLQER---------------SPKIERAALDG  465 (628)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEEEC----TTCCEEEEEEETTTTEEEEEEEETT---------------EEEEEEEETTS
T ss_pred             EEcCCCCEEEEEECCCCeEEEEEeC----CCCceeeEEEecCCCeEEEeecCCC---------------CCeEEEEeCCC
Confidence            9998755 77888876544444332    4577999999996699999997531               13799998875


Q ss_pred             CeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          189 SQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       189 g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      ...+.+. ..+..||||++|++++.||++|+..++|.+++++|..  ...+ ..-...|.||+++.   |+||++++..+
T Consensus       466 ~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~--r~~~~~~~~~~P~glav~~---~~ly~tD~~~~  540 (628)
T 4a0p_A          466 TEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN--RIVLEDSNILQPVGLTVFE---NWLYWIDKQQQ  540 (628)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCEEEEEEET---TEEEEEETTTT
T ss_pred             CCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc--eEEEEcCCCCCcEEEEEEC---CEEEEEECCCC
Confidence            4444444 4788999999999988999999999999999998742  2222 22234699999986   79999999874


Q ss_pred             CCCCCCceeeEEECCC-CcEEEEEec
Q 048181          267 QPAGTPVPIGQRISAF-GAVLDTISF  291 (310)
Q Consensus       267 ~~~~~~~~~v~~~~~~-G~~~~~~~~  291 (310)
                              .|.++|.. |+....+..
T Consensus       541 --------~i~~~~k~~G~~~~~i~~  558 (628)
T 4a0p_A          541 --------MIEKIDMTGREGRTKVQA  558 (628)
T ss_dssp             --------EEEEEETTSSSCCEEEEC
T ss_pred             --------eEEEEECcCCCCcEEEec
Confidence                    78889975 876655553

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.84  E-value=2e-18  Score=157.29  Aligned_cols=218  Identities=14%  Similarity=0.048  Sum_probs=152.2

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEE--eeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           33 AFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTD--FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      ...|++++++++|.+|+++..+++|.++++.+....  +..           +.    .......|.+|+++  +++|||
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~-----------g~----~~~~~~~p~~i~~~--~~~lyv  145 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC-----------PD----MDMESGSTEQMVQY--GKYVYV  145 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC-----------TT----CCTTTCBCCCEEEE--TTEEEE
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc-----------CC----ccccCCCcceEEEE--CCEEEE
Confidence            468999999888987777767899999998854322  210           00    00122378999994  899999


Q ss_pred             EeC--CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          111 ADA--YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       111 ad~--~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++.  ...|.++|+++++.......     ...|+++++++ +|++|+++....... .      .....++|+++|+++
T Consensus       146 ~~~~~~~~v~viD~~t~~~~~~i~~-----g~~p~~i~~~~-dG~l~v~~~~~~~~~-~------~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          146 NCWSYQNRILKIDTETDKVVDELTI-----GIQPTSLVMDK-YNKMWTITDGGYEGS-P------YGYEAPSLYRIDAET  212 (328)
T ss_dssp             EECTTCCEEEEEETTTTEEEEEEEC-----SSCBCCCEECT-TSEEEEEBCCBCTTC-S------SCBCCCEEEEEETTT
T ss_pred             EcCCCCCEEEEEECCCCeEEEEEEc-----CCCccceEEcC-CCCEEEEECCCccCC-c------cccCCceEEEEECCC
Confidence            986  34599999998765433222     13589999999 599999986531000 0      001137899999988


Q ss_pred             CeEEEeec--CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecC-CCCCceeeeCCCCCCcEEEEE---
Q 048181          189 SQVTVLLR--NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINF-QAKPHNIKRNPGLLQTFWEAA---  262 (310)
Q Consensus       189 g~~~~~~~--~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l-~g~Pdgl~~d~~~dG~l~va~---  262 (310)
                      +++.....  ....|++|+++||+++||+++.   .|++++....+.....+... ...|+||++|+. +|+|||+.   
T Consensus       213 ~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~-~g~lyva~~~~  288 (328)
T 3dsm_A          213 FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN-NGEVYVADAID  288 (328)
T ss_dssp             TEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT-TCCEEEEECTT
T ss_pred             CeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCC-CCeEEEEcccc
Confidence            87764332  1247999999999999999976   89999886432211111111 247999999951 67999998   


Q ss_pred             -ecCCCCCCCCceeeEEECCCCcEEEEEecC
Q 048181          263 -IITRQPAGTPVPIGQRISAFGAVLDTISFE  292 (310)
Q Consensus       263 -~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p  292 (310)
                       ...        ..|.+||++|+++..+...
T Consensus       289 y~~~--------~~V~v~d~~g~~~~~i~~G  311 (328)
T 3dsm_A          289 YQQQ--------GIVYRYSPQGKLIDEFYVG  311 (328)
T ss_dssp             SSSE--------EEEEEECTTCCEEEEEEEE
T ss_pred             cccC--------CEEEEECCCCCEEEEEEec
Confidence             433        4799999999999998764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.83  E-value=2.4e-18  Score=158.56  Aligned_cols=198  Identities=15%  Similarity=0.164  Sum_probs=144.8

Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCc-
Q 048181           38 SIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG-  116 (310)
Q Consensus        38 gia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~g-  116 (310)
                      ..+.++++.|+|+.  .+.|+++++++......                   .....+|.|+++|+.+++||++|...+ 
T Consensus        38 C~~~~~~~~ll~~~--~~~I~~i~~~g~~~~~~-------------------~~~~~~~~~l~~d~~~~~ly~~D~~~~~   96 (349)
T 3v64_C           38 CKALGPEPVLLFAN--RIDIRQVLPHRSEYTLL-------------------LNNLENAIALDFHHRRELVFWSDVTLDR   96 (349)
T ss_dssp             EEESSSCCEEEEEC--BSCEEEECTTSCCEEEE-------------------ECSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ccccccCceeEeec--ccceEEEeCCCCeeEEe-------------------ecCCCceEEEEEeccccEEEEEeccCCc
Confidence            34445555555554  45799999987533221                   124457999999977899999998654 


Q ss_pred             EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee-
Q 048181          117 LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL-  195 (310)
Q Consensus       117 i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~-  195 (310)
                      |++++++++..+.+...    .+..|+++++|+.+|+||++|...                 ++|++++.++...+.+. 
T Consensus        97 I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g~ly~~d~~~-----------------~~I~~~~~dG~~~~~l~~  155 (349)
T 3v64_C           97 ILRANLNGSNVEEVVST----GLESPGGLAVDWVHDKLYWTDSGT-----------------SRIEVANLDGAHRKVLLW  155 (349)
T ss_dssp             EEEEETTSCSCEEEECS----SCSCCCEEEEETTTTEEEEEETTT-----------------TEEEEEETTSCSCEEEEC
T ss_pred             eEEEecCCCCceEEEeC----CCCCccEEEEecCCCeEEEEcCCC-----------------CeEEEEcCCCCceEEEEe
Confidence            99999988665554321    356789999997679999999753                 57888888754444443 


Q ss_pred             cCCCCCceeEEccCCCEEEEEecCC-CeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCC
Q 048181          196 RNLTGPAGVAISVDSSFLLVSEFTG-NRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTP  272 (310)
Q Consensus       196 ~~l~~pnGIa~~~dg~~Lyv~d~~~-~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~  272 (310)
                      ..+..|+||+++|+++.||++|... ++|+|++++|..  ...+  .++ ..|.||++|.. +|.||+++...+      
T Consensus       156 ~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~~-~~PnGla~d~~-~~~lY~aD~~~~------  225 (349)
T 3v64_C          156 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHL-FWPNGLTIDYA-GRRMYWVDAKHH------  225 (349)
T ss_dssp             TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEESCCSSC-SCEEEEEEETT-TTEEEEEETTTT------
T ss_pred             CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEEEEECCC-CCcceEEEeCC-CCEEEEEECCCC------
Confidence            5788999999999888999999998 999999998742  1222  233 36999999941 678999998763      


Q ss_pred             ceeeEEECCCCcEEEEE
Q 048181          273 VPIGQRISAFGAVLDTI  289 (310)
Q Consensus       273 ~~~v~~~~~~G~~~~~~  289 (310)
                        .|.+++.+|.....+
T Consensus       226 --~I~~~~~dG~~~~~~  240 (349)
T 3v64_C          226 --VIERANLDGSHRKAV  240 (349)
T ss_dssp             --EEEEEETTSCSCEEE
T ss_pred             --EEEEEeCCCCceEEE
Confidence              788888888654443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.83  E-value=9.7e-19  Score=153.14  Aligned_cols=195  Identities=19%  Similarity=0.280  Sum_probs=143.9

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      .+..|.+++++++|++|+++. +++|++++++++.....                  .......|.+|+++ ++|+|||+
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~------------------~~~~~~~p~~i~~~-~~g~l~v~  124 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL------------------PFDGLNYPEGLAVD-TQGAVYVA  124 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC------------------CCCSCSSEEEEEEC-TTCCEEEE
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee------------------ecCCcCCCcceEEC-CCCCEEEE
Confidence            456899999999999888877 89999999887543211                  01223579999998 68999999


Q ss_pred             eCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          112 DAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       112 d~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      +... .|++++..+......  .  ...+..|+++++++ +|++|+++...                 ++|+++|++++.
T Consensus       125 ~~~~~~i~~~~~~~~~~~~~--~--~~~~~~p~~i~~~~-~g~l~v~~~~~-----------------~~i~~~~~~~~~  182 (270)
T 1rwi_B          125 DRGNNRVVKLAAGSKTQTVL--P--FTGLNDPDGVAVDN-SGNVYVTDTDN-----------------NRVVKLEAESNN  182 (270)
T ss_dssp             EGGGTEEEEECTTCCSCEEC--C--CCSCCSCCCEEECT-TCCEEEEEGGG-----------------TEEEEECTTTCC
T ss_pred             ECCCCEEEEEECCCceeEee--c--cccCCCceeEEEeC-CCCEEEEECCC-----------------CEEEEEecCCCc
Confidence            8754 588997655433221  1  12356799999999 59999998642                 679999987655


Q ss_pred             EEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCC
Q 048181          191 VTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQ  267 (310)
Q Consensus       191 ~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~  267 (310)
                      .... ...+..|++|+++++| .||+++...++|++|+.++...  ...  .++ ..|.+|++++  +|+||+++.... 
T Consensus       183 ~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~--~~~~~~~~-~~p~~i~~~~--~g~l~v~~~~~~-  255 (270)
T 1rwi_B          183 QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS--TVLPFTGL-NTPLAVAVDS--DRTVYVADRGND-  255 (270)
T ss_dssp             EEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC--EECCCCSC-SCEEEEEECT--TCCEEEEEGGGT-
T ss_pred             eEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc--eeeccCCC-CCceeEEECC--CCCEEEEECCCC-
Confidence            4432 2455789999999999 5999999999999998765311  111  222 3699999999  999999998763 


Q ss_pred             CCCCCceeeEEECCC
Q 048181          268 PAGTPVPIGQRISAF  282 (310)
Q Consensus       268 ~~~~~~~~v~~~~~~  282 (310)
                             +|.+++.+
T Consensus       256 -------~v~~~~~~  263 (270)
T 1rwi_B          256 -------RVVKLTSL  263 (270)
T ss_dssp             -------EEEEECCC
T ss_pred             -------EEEEEcCC
Confidence                   67777764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.82  E-value=1.5e-18  Score=163.21  Aligned_cols=199  Identities=13%  Similarity=0.104  Sum_probs=140.0

Q ss_pred             CCcceEEEccCCCEEEEEeC-CC-eEEEEECCCceE--EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           34 FGGESIAFEPVGGAFYTGVA-DG-RILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~-~g-~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ..|. ++++++|+.+|+... .+ +|++++++++..  .+..         +       .......|+++++++.+|+||
T Consensus       172 ~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~---------~-------~~~~~~~p~~iav~p~~g~ly  234 (409)
T 3hrp_A          172 KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ---------L-------GSTFSGKIGAVALDETEEWLY  234 (409)
T ss_dssp             CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE---------C-------CTTSCSCCCBCEECTTSSEEE
T ss_pred             CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee---------c-------cchhcCCcEEEEEeCCCCeEE
Confidence            4677 999999875555443 33 999999875432  2210         0       011456899999985589999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEeecc-CCCccccCcc-ceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          110 IADAYSGLLVVGPNGRLATQLATG-AEGQAFHFLD-GLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       110 Vad~~~gi~~id~~~~~~~~~~~~-~~g~~~~~pn-dvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      +++....|++++++++....+... ..+.....|. ++++++++|+||++|...                 ++|++++++
T Consensus       235 v~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-----------------~~I~~~~~~  297 (409)
T 3hrp_A          235 FVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-----------------SSVYKITPD  297 (409)
T ss_dssp             EECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT-----------------TEEEEECTT
T ss_pred             EEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC-----------------CEEEEEecC
Confidence            998765699999988765554221 1111112244 999999559999999753                 678888876


Q ss_pred             CCeEEEeecC---------------CCCCceeEEccCCCEEEEEec-CCCeEEEEEecCCCCCceee-ecC---------
Q 048181          188 SSQVTVLLRN---------------LTGPAGVAISVDSSFLLVSEF-TGNRTLKYWLRGPRANSFDI-INF---------  241 (310)
Q Consensus       188 ~g~~~~~~~~---------------l~~pnGIa~~~dg~~Lyv~d~-~~~~I~~~~~~~~~~g~~~~-~~l---------  241 (310)
                       +++..+...               +..|+||+++++|+ |||+|+ .+++|+++++..   |.... .+-         
T Consensus       298 -g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~---G~v~~~~g~~~~~g~~~g  372 (409)
T 3hrp_A          298 -GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILD---GYVSTVAGQVDVASQIDG  372 (409)
T ss_dssp             -CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTT---TEEEEEEECTTCBSCCCB
T ss_pred             -CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCC---CEEEEEeCCCCCCCcCCC
Confidence             445444432               57899999999998 999999 999999999532   33222 111         


Q ss_pred             ------CCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECC
Q 048181          242 ------QAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA  281 (310)
Q Consensus       242 ------~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~  281 (310)
                            ...|.||++|+  +|+||||+...+        +|.+++.
T Consensus       373 ~~~~~~~~~P~giavd~--~g~lyVad~~n~--------~Ir~i~~  408 (409)
T 3hrp_A          373 TPLEATFNYPYDICYDG--EGGYWIAEAWGK--------AIRKYAV  408 (409)
T ss_dssp             STTTCCBSSEEEEEECS--SSEEEEEESTTC--------EEEEEEE
T ss_pred             ChhceEeCCceEEEEcC--CCCEEEEECCCC--------eEEEEEe
Confidence                  13699999999  999999999874        6777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.82  E-value=2.6e-18  Score=160.41  Aligned_cols=197  Identities=15%  Similarity=0.163  Sum_probs=144.3

Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCc-
Q 048181           38 SIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG-  116 (310)
Q Consensus        38 gia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~g-  116 (310)
                      ..+.++++.++++.  .++|++++++++.....                   ......|.|+++|+.+++||++|...+ 
T Consensus        81 C~~~~~~~~l~~~~--~~~I~~i~~~~~~~~~~-------------------~~~~~~~~gl~~d~~~~~ly~~D~~~~~  139 (386)
T 3v65_B           81 CKALGPEPVLLFAN--RIDIRQVLPHRSEYTLL-------------------LNNLENAIALDFHHRRELVFWSDVTLDR  139 (386)
T ss_dssp             EEECSSCCEEEEEC--BSCEEEECTTSCCCEEE-------------------ECSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ECCccccceeEeec--CccceeeccCCCcEEEE-------------------ecCCCccEEEEEecCCCeEEEEeCCCCc
Confidence            34444545555543  46899999886532211                   134567999999977899999998754 


Q ss_pred             EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe-e
Q 048181          117 LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL-L  195 (310)
Q Consensus       117 i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~-~  195 (310)
                      |++++++++..+.+..    ..+..|+++++|+.+|+||++|...                 ++|++++.++...+.+ .
T Consensus       140 I~r~~~~g~~~~~~~~----~~~~~p~glavd~~~g~lY~~d~~~-----------------~~I~~~~~dg~~~~~l~~  198 (386)
T 3v65_B          140 ILRANLNGSNVEEVVS----TGLESPGGLAVDWVHDKLYWTDSGT-----------------SRIEVANLDGAHRKVLLW  198 (386)
T ss_dssp             EEEEETTSCCEEEEEC----SSCSCCCCEEEETTTTEEEEEETTT-----------------TEEEECBTTSCSCEEEEC
T ss_pred             EEEEecCCCCcEEEEe----CCCCCccEEEEEeCCCeEEEEcCCC-----------------CeEEEEeCCCCceEEeec
Confidence            9999998876555432    2356799999997679999999753                 5788888865443443 4


Q ss_pred             cCCCCCceeEEccCCCEEEEEecCC-CeEEEEEecCCCCCceee--ecCCCCCceeeeC-CCCCCcEEEEEecCCCCCCC
Q 048181          196 RNLTGPAGVAISVDSSFLLVSEFTG-NRTLKYWLRGPRANSFDI--INFQAKPHNIKRN-PGLLQTFWEAAIITRQPAGT  271 (310)
Q Consensus       196 ~~l~~pnGIa~~~dg~~Lyv~d~~~-~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d-~~~dG~l~va~~~~~~~~~~  271 (310)
                      .++..|+||+++|+++.||++|... ++|++++.+|..  ...+  .++ ..|.||++| .  +|+||+++...+     
T Consensus       199 ~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~~-~~PnGlavd~~--~~~lY~aD~~~~-----  268 (386)
T 3v65_B          199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHL-FWPNGLTIDYA--GRRMYWVDAKHH-----  268 (386)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSSC-SCEEEEEEEGG--GTEEEEEETTTT-----
T ss_pred             CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--cEEEEECCC-CCeeeEEEeCC--CCEEEEEECCCC-----
Confidence            5788999999999888999999988 999999998742  2222  233 369999999 5  679999998763     


Q ss_pred             CceeeEEECCCCcEEEEE
Q 048181          272 PVPIGQRISAFGAVLDTI  289 (310)
Q Consensus       272 ~~~~v~~~~~~G~~~~~~  289 (310)
                         .|.+++.+|.....+
T Consensus       269 ---~I~~~d~dG~~~~~~  283 (386)
T 3v65_B          269 ---VIERANLDGSHRKAV  283 (386)
T ss_dssp             ---EEEEECTTSCSCEEE
T ss_pred             ---EEEEEeCCCCeeEEE
Confidence               788888888654444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.81  E-value=1.7e-18  Score=156.62  Aligned_cols=218  Identities=13%  Similarity=0.054  Sum_probs=144.8

Q ss_pred             EEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE-
Q 048181           25 TKILFPPKAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL-  101 (310)
Q Consensus        25 ~~~~~~~~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~-  101 (310)
                      ..|++++.-.+||+++||+ +|.+|+.+..+++|.+++++++ .+.+.....       .     .......+|.||.+ 
T Consensus         4 ~~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~-------s-----~~g~~~~~~sGl~~~   71 (334)
T 2p9w_A            4 DQIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGA-------S-----SNGDGEQQMSGLSLL   71 (334)
T ss_dssp             SEEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTT-------C-----CSSCCSEEEEEEEES
T ss_pred             ceEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCc-------c-----ccCCCcceeeEEEEe
Confidence            4677777778999999997 4677777779999999999854 333311000       0     00012236789999 


Q ss_pred             --ecCCCeEEE-EeC-------------CCcEEEEeCC---CCeEEEeecc--C-C------CccccCccceEEeCCCCe
Q 048181          102 --HYATRQLYI-ADA-------------YSGLLVVGPN---GRLATQLATG--A-E------GQAFHFLDGLDVDQGTGV  153 (310)
Q Consensus       102 --d~~~g~LyV-ad~-------------~~gi~~id~~---~~~~~~~~~~--~-~------g~~~~~pndvavd~~~G~  153 (310)
                        | ++|+||| ++.             ...|+++|++   +++....+..  . .      +.....+||+++|+ +|+
T Consensus        72 ~~D-~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~Gn  149 (334)
T 2p9w_A           72 THD-NSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGN  149 (334)
T ss_dssp             SSS-SCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSC
T ss_pred             ccC-CCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCC
Confidence              6 5699999 442             2349999988   5554332221  1 1      11345699999999 599


Q ss_pred             EEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee------cCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          154 VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       154 lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                      +||||+..                -+.|+|++++...+..+.      .....+|||+++|||++|+++++ .++|++|+
T Consensus       150 aYVt~s~~----------------~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD  212 (334)
T 2p9w_A          150 SYVAFALG----------------MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFD  212 (334)
T ss_dssp             EEEEEEES----------------SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEE
T ss_pred             EEEeCCCC----------------CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEc
Confidence            99998632                167999999844454432      12345889999999999999999 99999999


Q ss_pred             ecCCCCCceeee--c---CCCCCcee-eeCCCCCCcE-EEEEecCCCCCCCCceeeEEECCCC
Q 048181          228 LRGPRANSFDII--N---FQAKPHNI-KRNPGLLQTF-WEAAIITRQPAGTPVPIGQRISAFG  283 (310)
Q Consensus       228 ~~~~~~g~~~~~--~---l~g~Pdgl-~~d~~~dG~l-~va~~~~~~~~~~~~~~v~~~~~~G  283 (310)
                      +..+......+.  +   ....||+| +...  +|++ +|+....        ..++..+.||
T Consensus       213 ~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~--~G~vllV~~~~~--------~~~~l~S~Dg  265 (334)
T 2p9w_A          213 VSKPYAWPEPVKINGDFGTLSGTEKIVTVPV--GNESVLVGARAP--------YAISFRSWDN  265 (334)
T ss_dssp             CSSSSCCCEECEESSCCCCCTTEEEEEEEEE--TTEEEEEEEETT--------EEEEEECSST
T ss_pred             CCCCcceeecccccCCcccccCccccccccc--CCEEEEEEcCCC--------CEEEEECCCC
Confidence            874311111112  2   22359995 7777  8987 8887654        2455666665

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=5.6e-18  Score=150.03  Aligned_cols=189  Identities=13%  Similarity=0.180  Sum_probs=136.5

Q ss_pred             CCCCCcceEEE-ccCCCEEEEEeC-CCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           31 PKAFGGESIAF-EPVGGAFYTGVA-DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        31 ~~~~~Pegia~-d~~G~l~~~d~~-~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      +.+..|.++++ +++|++|+++.. +++|++++++++......                  ......|.+|+++ ++|+|
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~------------------~~~~~~~~~i~~~-~~g~l  134 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFG------------------ATILQHPRGVTVD-NKGRI  134 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEEC------------------TTTCSCEEEEEEC-TTSCE
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEec------------------CccCCCceEEEEe-CCCCE
Confidence            34568999999 578888888754 899999998776432110                  1234579999998 68999


Q ss_pred             EEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          109 YIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       109 yVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      ||++... .|.++++++.....+...   ..+..|+++++++ +|++|++|...                 ++|+++|++
T Consensus       135 ~v~~~~~~~i~~~~~~g~~~~~~~~~---~~~~~p~~i~~~~-~g~l~v~~~~~-----------------~~i~~~~~~  193 (286)
T 1q7f_A          135 IVVECKVMRVIIFDQNGNVLHKFGCS---KHLEFPNGVVVND-KQEIFISDNRA-----------------HCVKVFNYE  193 (286)
T ss_dssp             EEEETTTTEEEEECTTSCEEEEEECT---TTCSSEEEEEECS-SSEEEEEEGGG-----------------TEEEEEETT
T ss_pred             EEEECCCCEEEEEcCCCCEEEEeCCC---CccCCcEEEEECC-CCCEEEEECCC-----------------CEEEEEcCC
Confidence            9998764 599999876544444221   2456799999999 59999998643                 678899886


Q ss_pred             CCeEEEeec--CCCCCceeEEccCCCEEEEEecCCC-eEEEEEecCCCCCceee-ecCC-CCCceeeeCCCCCCcEEEEE
Q 048181          188 SSQVTVLLR--NLTGPAGVAISVDSSFLLVSEFTGN-RTLKYWLRGPRANSFDI-INFQ-AKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       188 ~g~~~~~~~--~l~~pnGIa~~~dg~~Lyv~d~~~~-~I~~~~~~~~~~g~~~~-~~l~-g~Pdgl~~d~~~dG~l~va~  262 (310)
                      ...+..+..  .+..|+||+++++|+ |||++..++ +|.+|+.++...  ..+ .... ..|.++++++  +|+||++.
T Consensus       194 g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~~~--~~~~~~~~~~~~~~i~~~~--~g~l~vs~  268 (286)
T 1q7f_A          194 GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLI--SALESKVKHAQCFDVALMD--DGSVVLAS  268 (286)
T ss_dssp             CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEE--EEEEESSCCSCEEEEEEET--TTEEEEEE
T ss_pred             CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCCEE--EEEcccCCCCcceeEEECC--CCcEEEEC
Confidence            444444332  257899999999996 999999886 999998654211  112 2222 3588999999  99999997


Q ss_pred             ec
Q 048181          263 II  264 (310)
Q Consensus       263 ~~  264 (310)
                      ..
T Consensus       269 ~~  270 (286)
T 1q7f_A          269 KD  270 (286)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.80  E-value=1.4e-17  Score=146.84  Aligned_cols=180  Identities=18%  Similarity=0.118  Sum_probs=135.2

Q ss_pred             CCCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           31 PKAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        31 ~~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      ..+..|+++++|++ +++||++..+++|.+++.+++.. .+.                   ......|.|+++|+.+|+|
T Consensus        76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-------------------~~~~~~P~~i~vd~~~g~l  136 (267)
T 1npe_A           76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-------------------DTGLVNPRGIVTDPVRGNL  136 (267)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------CSSCSSEEEEEEETTTTEE
T ss_pred             CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE-------------------ECCCCCccEEEEeeCCCEE
Confidence            34678999999985 68999999999999999986532 221                   1123579999999558999


Q ss_pred             EEEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181          109 YIADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       109 yVad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                      |+++..   ..|.++++++...+.+..    ..+..|+++++|+++++||++|...                 ++|+++|
T Consensus       137 yv~~~~~~~~~I~~~~~dg~~~~~~~~----~~~~~P~gia~d~~~~~lyv~d~~~-----------------~~I~~~~  195 (267)
T 1npe_A          137 YWTDWNRDNPKIETSHMDGTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAGT-----------------HRAECLN  195 (267)
T ss_dssp             EEEECCSSSCEEEEEETTSCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETTT-----------------TEEEEEE
T ss_pred             EEEECCCCCcEEEEEecCCCCcEEEEE----CCCCCCcEEEEcCCCCEEEEEECCC-----------------CEEEEEe
Confidence            999975   348889887654444432    1356899999999668999999753                 6899999


Q ss_pred             CCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce--ee-ecCCCCCceeeeCCCCCCc
Q 048181          186 PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF--DI-INFQAKPHNIKRNPGLLQT  257 (310)
Q Consensus       186 ~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~~-~~l~g~Pdgl~~d~~~dG~  257 (310)
                      +++...+.+...+..|.||+++  ++.|||++..+++|++++.++   ++.  .+ .+-...|.||++.+  +++
T Consensus       196 ~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~---g~~~~~i~~g~~~~p~gi~~~~--~~~  263 (267)
T 1npe_A          196 PAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI---SKEMDTFHPHKQTRLYGITIAL--SQC  263 (267)
T ss_dssp             TTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTT---TEEEEEECCSSCCCCCCEEEEC--SCC
T ss_pred             cCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCC---CCceEEEccccccccceeeecC--ccC
Confidence            8765666666778899999986  457999999999999999763   322  11 11112599999998  875

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.80  E-value=8.1e-18  Score=153.17  Aligned_cols=177  Identities=15%  Similarity=0.179  Sum_probs=133.8

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      .+..|+|+|+|. +|++||+|..+++|.+++.+|.......                  ......|.||++|+.+|.||+
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~------------------~~~~~~P~giavdp~~g~ly~  138 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF------------------WQELDQPRAIALDPSSGFMYW  138 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE------------------CSSCSSEEEEEEEGGGTEEEE
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE------------------eCCCCCccEEEEeCCCCEEEE
Confidence            456899999996 6889999999999999999976432211                  134568999999976899999


Q ss_pred             EeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          111 ADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       111 ad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      +|..  ..|+++++++...+.+..    ..+..||++++|+++++||++|+..                 ++|+++|.+.
T Consensus       139 td~~~~~~I~r~~~dG~~~~~~~~----~~l~~Pnglavd~~~~~lY~aD~~~-----------------~~I~~~d~dG  197 (318)
T 3sov_A          139 TDWGEVPKIERAGMDGSSRFIIIN----SEIYWPNGLTLDYEEQKLYWADAKL-----------------NFIHKSNLDG  197 (318)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEETTT-----------------TEEEEEETTS
T ss_pred             EecCCCCEEEEEEcCCCCeEEEEE----CCCCCccEEEEeccCCEEEEEECCC-----------------CEEEEEcCCC
Confidence            9964  459999998755554432    2467899999998679999999753                 6899998875


Q ss_pred             CeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEec-CCCCCceee-ecCCCCCceeeeCC
Q 048181          189 SQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR-GPRANSFDI-INFQAKPHNIKRNP  252 (310)
Q Consensus       189 g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~-~~~~g~~~~-~~l~g~Pdgl~~d~  252 (310)
                      ...+++.. .+..|.||+++.  +.||+++..+++|++++.. |..  ...+ ..+. .|.+|++..
T Consensus       198 ~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~--~~~i~~~~~-~P~~i~v~~  259 (318)
T 3sov_A          198 TNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEG--LREIHSDIF-SPMDIHAFS  259 (318)
T ss_dssp             CSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCS--CEEEECCCS-SCCCEEEEC
T ss_pred             CceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCc--eEEEeCCCC-CCcEEEEec
Confidence            55555554 788999999974  3699999999999999974 321  1222 3333 588888754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.80  E-value=2.3e-17  Score=152.35  Aligned_cols=225  Identities=16%  Similarity=0.086  Sum_probs=145.8

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC---CC
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA---TR  106 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~---~g  106 (310)
                      ...+..|++|+++++|++|+++. .++|+++++++. +.+....              ........|+||++++.   ++
T Consensus        25 a~~l~~P~~ia~~pdG~l~V~e~-~g~I~~~d~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g   88 (354)
T 3a9g_A           25 ASDLEVPWSIAPLGGGRYLVTER-PGRLVLISPSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKS   88 (354)
T ss_dssp             ECSCSCEEEEEEEETTEEEEEET-TTEEEEECSSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred             eCCCCCCeEEEEcCCCeEEEEeC-CCEEEEEeCCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCC
Confidence            34688999999999999777776 499999987765 4443110              00123457999999844   59


Q ss_pred             eEEEEeCC--------CcEEEEeCCCC-----eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181          107 QLYIADAY--------SGLLVVGPNGR-----LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus       107 ~LyVad~~--------~gi~~id~~~~-----~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      .|||++..        ..|++++.+++     ..+.+....+.....++++|++++ +|.||||+........  ..+  
T Consensus        89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~--~~d--  163 (354)
T 3a9g_A           89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRL--AQD--  163 (354)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGG--GTC--
T ss_pred             EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCcc--ccC--
Confidence            99999763        46999987654     123333323333455789999999 5999999754211000  000  


Q ss_pred             ecCCCceEEEEcCCCC--------eEEEeecCCCCCceeEEccCCCEEEEEecCCCe---EEEEEecCCCCC--------
Q 048181          174 TNDSTGRLLSYNPRSS--------QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNR---TLKYWLRGPRAN--------  234 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g--------~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~---I~~~~~~~~~~g--------  234 (310)
                      .....|+|+|++++..        ..+++..++..|+||+|+++...||++|...++   |.++.. |..-|        
T Consensus       164 ~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~  242 (354)
T 3a9g_A          164 LSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKA  242 (354)
T ss_dssp             TTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCC
T ss_pred             CCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCC
Confidence            1134589999999733        246677889999999999944459999998764   555432 21111        


Q ss_pred             ----ceee-ecC---CCCCceeee-------CCCCCCcEEEEEecCCCCCCCCceeeEEECCC--CcEE
Q 048181          235 ----SFDI-INF---QAKPHNIKR-------NPGLLQTFWEAAIITRQPAGTPVPIGQRISAF--GAVL  286 (310)
Q Consensus       235 ----~~~~-~~l---~g~Pdgl~~-------d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~--G~~~  286 (310)
                          .... ..+   ...|.||++       +.  +|++|++.....        +|.+++.+  |++.
T Consensus       243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~--~G~l~v~~~~~~--------~v~~~~~~~~g~~~  301 (354)
T 3a9g_A          243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGL--RGWLLIACLRGS--------MLAAVNFGDNMEVR  301 (354)
T ss_dssp             CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGG--TTEEEEEETTTT--------EEEEEEECGGGCEE
T ss_pred             CCCCCcCCEeecCCCCcCCcceEEECCCCCccc--CCcEEEEEcCCC--------EEEEEEECCCCccc
Confidence                0011 122   246999999       56  899999988763        55555543  4443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.80  E-value=3.2e-17  Score=148.83  Aligned_cols=189  Identities=17%  Similarity=0.201  Sum_probs=135.9

Q ss_pred             EEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCC
Q 048181           47 AFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS-GLLVVGPNG  124 (310)
Q Consensus        47 l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~  124 (310)
                      |+|+.  .+.|++++.++.. +.+.                    +...+|.|+++|..+++||++|... .|+++++++
T Consensus         4 ll~~~--~~~I~~i~~~~~~~~~~~--------------------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g   61 (316)
T 1ijq_A            4 LFFTN--RHEVRKMTLDRSEYTSLI--------------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR   61 (316)
T ss_dssp             EEEEC--BSSEEEEETTSCCCEEEE--------------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             EEEEC--CCeEEEEECCCcceEehh--------------------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCC
Confidence            44443  4579999988643 2221                    3456899999996688999999874 499999886


Q ss_pred             ----CeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee-cCCC
Q 048181          125 ----RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL-RNLT  199 (310)
Q Consensus       125 ----~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~-~~l~  199 (310)
                          ...+.+..    ..+..|.++++|+.+++||++|...                 ++|.++++++...+.+. ..+.
T Consensus        62 ~~~~~~~~~~~~----~~~~~p~glavd~~~~~ly~~d~~~-----------------~~I~~~~~~g~~~~~~~~~~~~  120 (316)
T 1ijq_A           62 AHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSVL-----------------GTVSVADTKGVKRKTLFRENGS  120 (316)
T ss_dssp             ------CEEEEC----SSCSCCCEEEEETTTTEEEEEETTT-----------------TEEEEEETTSSSEEEEEECTTC
T ss_pred             CCCCcccEEEEe----CCCCCcCEEEEeecCCeEEEEECCC-----------------CEEEEEeCCCCceEEEEECCCC
Confidence                22233321    2356799999996569999999753                 67889988755555554 4688


Q ss_pred             CCceeEEccCCCEEEEEecCC-CeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceee
Q 048181          200 GPAGVAISVDSSFLLVSEFTG-NRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIG  276 (310)
Q Consensus       200 ~pnGIa~~~dg~~Lyv~d~~~-~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v  276 (310)
                      .|+||+++|+++.||+++... ++|++++++|..  ...+  ..+ ..|.||++|.. +++||+++....        .|
T Consensus       121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~~-~~P~gla~d~~-~~~lY~~D~~~~--------~I  188 (316)
T 1ijq_A          121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENI-QWPNGITLDLL-SGRLYWVDSKLH--------SI  188 (316)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSC-SCEEEEEEETT-TTEEEEEETTTT--------EE
T ss_pred             CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECCC-CCceEEEEecc-CCEEEEEECCCC--------eE
Confidence            999999999888899999876 899999998642  1122  233 46999999951 578999998763        78


Q ss_pred             EEECCCCcEEEEEe
Q 048181          277 QRISAFGAVLDTIS  290 (310)
Q Consensus       277 ~~~~~~G~~~~~~~  290 (310)
                      .+++.+|+..+.+.
T Consensus       189 ~~~d~dg~~~~~~~  202 (316)
T 1ijq_A          189 SSIDVNGGNRKTIL  202 (316)
T ss_dssp             EEEETTSCSCEEEE
T ss_pred             EEEecCCCceEEEe
Confidence            88898887555553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.79  E-value=2.2e-17  Score=152.32  Aligned_cols=217  Identities=17%  Similarity=0.162  Sum_probs=139.3

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      +++.+  ...+..|++|+++++|++|+++. .++|++++ ++..+.+....              ........|+||+++
T Consensus        22 ~~~~v--a~~l~~P~~ia~~pdG~l~V~e~-~g~I~~i~-~g~~~~~~~~~--------------v~~~g~~~p~gia~~   83 (352)
T 2ism_A           22 RVEEV--VGGLEVPWALAFLPDGGMLIAER-PGRIRLFR-EGRLSTYAELS--------------VYHRGESGLLGLALH   83 (352)
T ss_dssp             CEEEE--ECCCSCEEEEEECTTSCEEEEET-TTEEEEEE-TTEEEEEEECC--------------CCCSTTCSEEEEEEC
T ss_pred             EEEEE--ECCCCCceEEEEcCCCeEEEEeC-CCeEEEEE-CCCccEeecce--------------EeecCCCCceeEEEC
Confidence            44444  34588999999999999777775 59999999 55444433110              011234679999998


Q ss_pred             cC---CCeEEEEeCC------CcEEEEeCCCCe---EEEeeccCC--CccccCccceEEeCCCCeEEEEcCCCccCccce
Q 048181          103 YA---TRQLYIADAY------SGLLVVGPNGRL---ATQLATGAE--GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTI  168 (310)
Q Consensus       103 ~~---~g~LyVad~~------~gi~~id~~~~~---~~~~~~~~~--g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~  168 (310)
                      +.   ++.|||++..      ..|++++.+++.   .+.+....+  ......++++++++ +|.|||++...... . .
T Consensus        84 pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~-~-~  160 (352)
T 2ism_A           84 PRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYER-E-L  160 (352)
T ss_dssp             TTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCG-G-G
T ss_pred             CCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCC-c-c
Confidence            43   4899999863      459999877542   233333222  22456789999999 59999998543110 0 0


Q ss_pred             eEeeeecCCCceEEEEcCCC-------------CeEEEeecCCCCCceeEEccCCCEEEEEecCCCe--------EEEEE
Q 048181          169 VKLNITNDSTGRLLSYNPRS-------------SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNR--------TLKYW  227 (310)
Q Consensus       169 ~~~~~~~~~~G~l~~~d~~~-------------g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~--------I~~~~  227 (310)
                      ..+  .....|+|+|++++.             ...+++..++..|+||+++|+...||++|...+.        |.++.
T Consensus       161 ~~d--~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~  238 (352)
T 2ism_A          161 AQD--LASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV  238 (352)
T ss_dssp             GGC--TTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC
T ss_pred             ccC--CCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec
Confidence            000  012458999999874             2345566788899999999954459999998776        55553


Q ss_pred             ecCCCCC------------ceee-ecCC--CCCceeeeCCCCCCcEEEEEecCC
Q 048181          228 LRGPRAN------------SFDI-INFQ--AKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       228 ~~~~~~g------------~~~~-~~l~--g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      . +..-|            .... ..++  ..|.||++ .  +|++|+++....
T Consensus       239 ~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~--~G~l~v~~~~~~  288 (352)
T 2ism_A          239 P-GGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-F--RGDLYVAGLRGQ  288 (352)
T ss_dssp             T-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-E--TTEEEEEETTTT
T ss_pred             c-CCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-E--CCEEEEEECCCC
Confidence            2 21111            0001 1221  36999999 4  699999988763

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.79  E-value=5.2e-18  Score=160.75  Aligned_cols=197  Identities=11%  Similarity=0.046  Sum_probs=135.6

Q ss_pred             CCCCcceEEEccCCCEEEEEeCC----CeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           32 KAFGGESIAFEPVGGAFYTGVAD----GRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~----g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      .+..|.+|+++++|+||++|..+    ..++++++.+++..-.                  .......|.|+++|+.+|+
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~------------------~~~~~~~P~giavd~~~G~  241 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERL------------------SLCNARGAKTCAVHPQNGK  241 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEE------------------EEEECSSBCCCEECTTTCC
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccc------------------cccccCCCCEEEEeCCCCe
Confidence            56789999999999988888643    2366665543321000                  0123568999999854899


Q ss_pred             EEEEeCCCc-EEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          108 LYIADAYSG-LLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       108 LyVad~~~g-i~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      |||+|...+ |++++++++.. +.+.....   ...+++++++++ |+ |||+|...                 .+|+++
T Consensus       242 lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---~~~~~~ia~dpd-G~~LYvad~~~-----------------~~I~~~  300 (433)
T 4hw6_A          242 IYYTRYHHAMISSYDPATGTLTEEEVMMDT---KGSNFHIVWHPT-GDWAYIIYNGK-----------------HCIYRV  300 (433)
T ss_dssp             EEECBTTCSEEEEECTTTCCEEEEEEECSC---CSSCEEEEECTT-SSEEEEEETTT-----------------TEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEeccCC---CCCcccEEEeCC-CCEEEEEeCCC-----------------CEEEEE
Confidence            999998754 99999987665 44432211   234568999995 65 99999764                 456665


Q ss_pred             cCC--CCeE---EEee---------------cCCCCCceeEE---------ccCCCEEEEEecCCCeEEEEEecCCCCCc
Q 048181          185 NPR--SSQV---TVLL---------------RNLTGPAGVAI---------SVDSSFLLVSEFTGNRTLKYWLRGPRANS  235 (310)
Q Consensus       185 d~~--~g~~---~~~~---------------~~l~~pnGIa~---------~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~  235 (310)
                      +.+  ++.+   ..+.               ..+..|+||++         +++| .|||+|+.+++|++++.+|    .
T Consensus       301 ~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G----~  375 (433)
T 4hw6_A          301 DYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEG----R  375 (433)
T ss_dssp             EBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTS----E
T ss_pred             eCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCCC----C
Confidence            533  2221   1222               13678999999         7777 4999999999999998654    2


Q ss_pred             eee-e------------c-C-----CCCCceeeeC-CCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181          236 FDI-I------------N-F-----QAKPHNIKRN-PGLLQTFWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       236 ~~~-~------------~-l-----~g~Pdgl~~d-~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                      ... .            + +     ...|.||++| +  +|+||||+....        +|.+++++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~--~g~lyVaD~~n~--------rIr~i~~e  432 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK--RKCFYIGDCDNH--------RVRKIAPE  432 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT--TTEEEEEEGGGT--------EEEEEEEC
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC--CCEEEEEeCCCC--------EEEEEecC
Confidence            211 1            1 1     1359999999 7  999999999874        78777753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.79  E-value=3.5e-17  Score=153.52  Aligned_cols=207  Identities=16%  Similarity=0.179  Sum_probs=144.9

Q ss_pred             CEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCc-EEEEeCC
Q 048181           46 GAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG-LLVVGPN  123 (310)
Q Consensus        46 ~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~g-i~~id~~  123 (310)
                      .|+|+.  .+.|++++.++.. +.+.                    .....|.||++|..+++||++|...+ |++++++
T Consensus        85 ~ll~~~--~~~I~~i~l~~~~~~~~~--------------------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~  142 (400)
T 3p5b_L           85 YLFFTN--RHEVRKMTLDRSEYTSLI--------------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD  142 (400)
T ss_dssp             EEEEEE--TTEEEEECTTSCSCEEEE--------------------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred             eeEEec--cceeEEEccCCcceeEec--------------------cccCcceEEeeeeccCceEEEecCCCeEEEEEcc
Confidence            344444  5799999988653 3221                    34568999999977899999998754 8999987


Q ss_pred             CC----eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee-cCC
Q 048181          124 GR----LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL-RNL  198 (310)
Q Consensus       124 ~~----~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~-~~l  198 (310)
                      +.    ..+.+..    ..+..|+++|+|..+++||++|...                 ++|.++++++...+.+. ..+
T Consensus       143 g~~~~~~~~~~~~----~~~~~p~glavD~~~~~lY~~d~~~-----------------~~I~~~~~~g~~~~~l~~~~~  201 (400)
T 3p5b_L          143 RAHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSVL-----------------GTVSVADTKGVKRKTLFRENG  201 (400)
T ss_dssp             -----CCCEEEEC----SSCSCEEEEEEETTTTEEEEEETTT-----------------TEEEEECTTTCSEEEEEECSS
T ss_pred             cCCCCCcceEEEe----CCCCCcccEEEEecCCceEEEECCC-----------------CeEEEEeCCCCceEEEEeCCC
Confidence            62    2233322    2356799999998569999999753                 68999998765555544 478


Q ss_pred             CCCceeEEccCCCEEEEEecC-CCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCcee
Q 048181          199 TGPAGVAISVDSSFLLVSEFT-GNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPI  275 (310)
Q Consensus       199 ~~pnGIa~~~dg~~Lyv~d~~-~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~  275 (310)
                      ..|+||+++|.++.||++|.. .++|++++++|..  ...+  .++ ..|.||++|.. +++||+++....        .
T Consensus       202 ~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--~~~~~~~~l-~~P~glavd~~-~~~lY~aD~~~~--------~  269 (400)
T 3p5b_L          202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENI-QWPNGITLDLL-SGRLYWVDSKLH--------S  269 (400)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--CEEEECSSC-SCEEEEEEETT-TTEEEEEETTTT--------E
T ss_pred             CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--cEEEEECCC-CceEEEEEEeC-CCEEEEEECCCC--------E
Confidence            899999999988889999986 4899999998742  2222  333 46999999941 678999998763        7


Q ss_pred             eEEECCCCcEEEEEecCCCccccceeEEEecCC
Q 048181          276 GQRISAFGAVLDTISFEAQYSTTPISEVQPFGG  308 (310)
Q Consensus       276 v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~~~  308 (310)
                      |.+++.+|.....+....+ .+.....++-+++
T Consensus       270 I~~~d~dG~~~~~~~~~~~-~l~~P~gl~v~~~  301 (400)
T 3p5b_L          270 ISSIDVNGGNRKTILEDEK-RLAHPFSLAVFED  301 (400)
T ss_dssp             EEEEETTSCCCEEEEECSS-TTSSEEEEEEETT
T ss_pred             EEEEeCCCCccEEEEeCCC-CCCCCEEEEEeCC
Confidence            8889988876555543211 1233444444444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=9.8e-18  Score=158.74  Aligned_cols=197  Identities=11%  Similarity=0.058  Sum_probs=136.1

Q ss_pred             CCCCcceEEEccCCC-EEEEEeCCC----eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181           32 KAFGGESIAFEPVGG-AFYTGVADG----RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR  106 (310)
Q Consensus        32 ~~~~Pegia~d~~G~-l~~~d~~~g----~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g  106 (310)
                      .+..|.+|+++++|+ +|+++..++    .++.+++++++.....                  ......|.|+++++.+|
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~------------------l~~~~~p~giavdp~~g  238 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITE------------------LTKGQNCNGAETHPING  238 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEE------------------EEECSSCCCEEECTTTC
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeee------------------eccCCCceEEEEeCCCC
Confidence            456899999999998 777776443    5677777664421000                  01245799999985489


Q ss_pred             eEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          107 QLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       107 ~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      +|||+|... .|++++++++....+....   ....|++++++++ |+ |||+|...                 .+|+++
T Consensus       239 ~lyv~d~~~~~V~~~~~~~~~~~~~~~~~---~~~~P~gia~~pd-G~~lyv~d~~~-----------------~~I~~~  297 (430)
T 3tc9_A          239 ELYFNSWNAGQVFRYDFTTQETTPLFTIQ---DSGWEFHIQFHPS-GNYAYIVVVNQ-----------------HYILRS  297 (430)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEEECS---SSSCCEEEEECTT-SSEEEEEETTT-----------------TEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEEEcC---CCCcceeEEEcCC-CCEEEEEECCC-----------------CEEEEE
Confidence            999999875 4999999987664443221   1357999999995 76 99999764                 355555


Q ss_pred             cCC--CCeE---EEee---------------cCCCCCc-eeEEc--------cCCCEEEEEecCCCeEEEEEecCCCCCc
Q 048181          185 NPR--SSQV---TVLL---------------RNLTGPA-GVAIS--------VDSSFLLVSEFTGNRTLKYWLRGPRANS  235 (310)
Q Consensus       185 d~~--~g~~---~~~~---------------~~l~~pn-GIa~~--------~dg~~Lyv~d~~~~~I~~~~~~~~~~g~  235 (310)
                      +.+  +++.   ..+.               ..+..|+ |++++        ++| .|||+|+.+++|++++.+|    .
T Consensus       298 ~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G----~  372 (430)
T 3tc9_A          298 DYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQG----R  372 (430)
T ss_dssp             EEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTS----E
T ss_pred             eCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECCCC----c
Confidence            433  1211   1111               1367898 89885        446 5999999999999998553    2


Q ss_pred             eee-ecC------------------CCCCceeeeCCCCC-CcEEEEEecCCCCCCCCceeeEEECCC
Q 048181          236 FDI-INF------------------QAKPHNIKRNPGLL-QTFWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       236 ~~~-~~l------------------~g~Pdgl~~d~~~d-G~l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                      ... .+.                  ...|.||++|+  + |+||||+....        +|.+++++
T Consensus       373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~--~~g~lyVaD~~n~--------rIr~i~~e  429 (430)
T 3tc9_A          373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE--ERECFFIGDRENR--------RIRKIGYE  429 (430)
T ss_dssp             EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET--TTTEEEEEEGGGT--------EEEEEEEC
T ss_pred             EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC--CCCEEEEEECCCC--------eEEEEccC
Confidence            221 110                  12699999997  5 89999998874        78888765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=4.1e-17  Score=148.32  Aligned_cols=190  Identities=14%  Similarity=0.188  Sum_probs=131.5

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce---EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF---TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR  106 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g  106 (310)
                      .+.+..|.+++++++|++|+++..+++|++++++++.   ..+...+       ..|.    .......|.+|++++.+|
T Consensus        87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-------~~g~----~~~~~~~P~~ia~~~~~g  155 (329)
T 3fvz_A           87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM-------QPGS----DQNHFCQPTDVAVEPSTG  155 (329)
T ss_dssp             TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT-------BCCC----STTCCSSEEEEEECTTTC
T ss_pred             CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC-------CCCC----CccccCCCcEEEEeCCCC
Confidence            3567799999999999999999999999999998763   2221100       0000    012455899999984489


Q ss_pred             eEEEEeC-C-CcEEEEeCCCCeEEEeeccCCC-----ccccCccceEEeCCCCeEEEEcCCCc----cCcc--ceeEee-
Q 048181          107 QLYIADA-Y-SGLLVVGPNGRLATQLATGAEG-----QAFHFLDGLDVDQGTGVVYFTDASGV----YDFR--TIVKLN-  172 (310)
Q Consensus       107 ~LyVad~-~-~gi~~id~~~~~~~~~~~~~~g-----~~~~~pndvavd~~~G~lyvtd~~~~----~~~~--~~~~~~-  172 (310)
                      +|||+|. . ..|.++++++..+..+.....+     ..+..|+++++++++|++||+|....    +...  .+...+ 
T Consensus       156 ~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             CEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             eEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            9999995 3 4599999876555554322221     36788999999994499999997653    1111  111100 


Q ss_pred             --------------------------eecCCCceEEEEcCCCCeEEEee----cCCCCCceeEEccCCCEEEEEecCCCe
Q 048181          173 --------------------------ITNDSTGRLLSYNPRSSQVTVLL----RNLTGPAGVAISVDSSFLLVSEFTGNR  222 (310)
Q Consensus       173 --------------------------~~~~~~G~l~~~d~~~g~~~~~~----~~l~~pnGIa~~~dg~~Lyv~d~~~~~  222 (310)
                                                .....+.+++.++..++++....    ..+..|+||++++|| .|||++..+++
T Consensus       236 ~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~  314 (329)
T 3fvz_A          236 HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNT  314 (329)
T ss_dssp             CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCC
T ss_pred             ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCE
Confidence                                      00011236777886667665543    457789999999999 69999999999


Q ss_pred             EEEEEecCC
Q 048181          223 TLKYWLRGP  231 (310)
Q Consensus       223 I~~~~~~~~  231 (310)
                      |++|++++.
T Consensus       315 I~~~~~~~~  323 (329)
T 3fvz_A          315 VWKFTLTEK  323 (329)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEeCCcc
Confidence            999998763

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.76  E-value=1.2e-16  Score=161.38  Aligned_cols=212  Identities=16%  Similarity=0.194  Sum_probs=146.2

Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCc-EEE
Q 048181           42 EPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG-LLV  119 (310)
Q Consensus        42 d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~g-i~~  119 (310)
                      +....|||+.  ...|++++.++. .+.+.                    .....|.||++|..+++||++|...+ |++
T Consensus       393 ~~~p~Ll~an--~~~Ir~i~l~~~~~~~l~--------------------~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~  450 (791)
T 3m0c_C          393 GSIAYLFFTN--RHEVRKMTLDRSEYTSLI--------------------PNLRNVVALDTEVASNRIYWSDLSQRMICS  450 (791)
T ss_dssp             TSCCEEEEEC--BSSEEEECTTSCCCEEEE--------------------CSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccccccc--ccceeEeeccCCcceeee--------------------cCCCceEEEeecccCCeeEEeeccceeEEE
Confidence            3333444443  457888887743 33222                    34567999999966899999998755 889


Q ss_pred             EeCCCC----eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181          120 VGPNGR----LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL  195 (310)
Q Consensus       120 id~~~~----~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~  195 (310)
                      +++++.    ..+.+..    ..+..|++||+|..+++|||+|...                 ++|++++.++...+++.
T Consensus       451 ~~l~g~~~~~~~~~vi~----~~l~~P~GLAvD~~~~~LY~tD~~~-----------------~~I~v~~ldG~~~~~l~  509 (791)
T 3m0c_C          451 TQLDRAHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSVL-----------------GTVSVADTKGVKRKTLF  509 (791)
T ss_dssp             EEC--------CEEEEC----SSCSCCCEEEEETTTTEEEEEETTT-----------------TEEEEEETTSSSEEEEE
T ss_pred             EeccCCCCCcceeEEEe----cCCCCcceeeeeecCCcEEEEecCC-----------------CeEEEEeCCCCeEEEEE
Confidence            988763    2222322    2467899999998667999999764                 68999998765555554


Q ss_pred             -cCCCCCceeEEccCCCEEEEEecCC-CeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCC
Q 048181          196 -RNLTGPAGVAISVDSSFLLVSEFTG-NRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGT  271 (310)
Q Consensus       196 -~~l~~pnGIa~~~dg~~Lyv~d~~~-~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~  271 (310)
                       ..+..|+|||++|.++.||++|... ++|++++++|..  ...+  .++ ..|.||++|.. +|+||+++....     
T Consensus       510 ~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~~~lv~~~l-~~P~GLavD~~-~~~LYwaD~~~~-----  580 (791)
T 3m0c_C          510 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENI-QWPNGITLDLL-SGRLYWVDSKLH-----  580 (791)
T ss_dssp             ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSC-SCEEEEEEETT-TTEEEEEETTTT-----
T ss_pred             eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--eEEEEeCCC-CCceEEEEecC-CCeEEEEeCCCC-----
Confidence             5788999999999878899999876 899999998742  2222  334 36999999931 789999997653     


Q ss_pred             CceeeEEECCCCcEEEEEecCCCccccceeEEEecCCC
Q 048181          272 PVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGA  309 (310)
Q Consensus       272 ~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~~~~  309 (310)
                         .|.+++.+|+....+....+ .+.....++.+++.
T Consensus       581 ---~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~~~~  614 (791)
T 3m0c_C          581 ---SISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDK  614 (791)
T ss_dssp             ---EEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTE
T ss_pred             ---cEEEEecCCCceEEEecCCC-ccCCCCEEEEeCCE
Confidence               78888988876655543222 22344455555553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.75  E-value=4.8e-17  Score=147.31  Aligned_cols=198  Identities=14%  Similarity=0.187  Sum_probs=135.6

Q ss_pred             CCcceEEEcc-CCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEEE
Q 048181           34 FGGESIAFEP-VGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLYI  110 (310)
Q Consensus        34 ~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~LyV  110 (310)
                      ..|.++++++ +|+||+++.. +.|++++++++. +.+...        ..       ......|+++++| + +|+|||
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~--------~~-------~~~~~~p~~i~~d-~~~G~l~v  142 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHATQLATS--------VD-------GVPFKWLYAVTVD-QRTGIVYF  142 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETT-TEEEEECTTCEECEEEESE--------ET-------TEECSCEEEEEEC-TTTCCEEE
T ss_pred             CCCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEEEEeccc--------CC-------CCcccccceEEEe-cCCCEEEE
Confidence            3699999997 7887777764 569999988543 333210        00       0123579999998 6 899999


Q ss_pred             EeCC------------------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEe
Q 048181          111 ADAY------------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus       111 ad~~------------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~  171 (310)
                      +|..                  .+|+++|+++++.+.+..     .+..||+++++++ | .+||+|+..          
T Consensus       143 ~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~d-g~~lyv~d~~~----------  206 (322)
T 2fp8_A          143 TDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-----ELHVPGGAEVSAD-SSFVLVAEFLS----------  206 (322)
T ss_dssp             EESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-----EESCCCEEEECTT-SSEEEEEEGGG----------
T ss_pred             ECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-----CCccCcceEECCC-CCEEEEEeCCC----------
Confidence            9864                  249999998877655432     3578999999995 6 599999753          


Q ss_pred             eeecCCCceEEEEcCCC---CeEEEeecCCCCCceeEEccCCCEEEEEecC----------CCeEEEEEecCCCCCceee
Q 048181          172 NITNDSTGRLLSYNPRS---SQVTVLLRNLTGPAGVAISVDSSFLLVSEFT----------GNRTLKYWLRGPRANSFDI  238 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~---g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~----------~~~I~~~~~~~~~~g~~~~  238 (310)
                             ++|++|+.++   ++.+.+.. +..|+||+++++|+ |||++..          .++|++|+.++........
T Consensus       207 -------~~I~~~~~~~~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~  277 (322)
T 2fp8_A          207 -------HQIVKYWLEGPKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL  277 (322)
T ss_dssp             -------TEEEEEESSSTTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC
T ss_pred             -------CeEEEEECCCCcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEEC
Confidence                   5788888763   34444443 33399999999997 9999876          5789999875421111111


Q ss_pred             -ecC-CCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCc
Q 048181          239 -INF-QAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGA  284 (310)
Q Consensus       239 -~~l-~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~  284 (310)
                       .+. ...|.+++. .  +|+|||+.....        .+.+++++.+
T Consensus       278 ~~g~~~~~~~~~~~-~--~g~L~v~~~~~~--------~i~~~~~~~~  314 (322)
T 2fp8_A          278 PPPFAGEHFEQIQE-H--DGLLYIGTLFHG--------SVGILVYDKK  314 (322)
T ss_dssp             CTTTTTSCCCEEEE-E--TTEEEEECSSCS--------EEEEEEC---
T ss_pred             CCCCccccceEEEE-e--CCEEEEeecCCC--------ceEEEecccc
Confidence             121 235788877 4  689999987653        7888876543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.74  E-value=4.3e-16  Score=142.55  Aligned_cols=195  Identities=11%  Similarity=0.100  Sum_probs=136.0

Q ss_pred             CCCCcceEEEccCCCEEEEEeC-----CCeEEEEECCCce-E-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           32 KAFGGESIAFEPVGGAFYTGVA-----DGRILKYQAPDGF-T-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~-----~g~I~r~~~~g~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      .+..|.++++|++|+||++|..     .++|++++++++. . .+....              ........|++++++++
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~--------------~~~~~~~~~~~v~vd~~  130 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP--------------PITLSNSFVNDLAVDLI  130 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT--------------TTSCTTCCCCEEEEETT
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh--------------hhcccccccceEEEecC
Confidence            5779999999999999999976     5899999987443 2 332110              00122356899999855


Q ss_pred             CCeEEEEeC---C-CcEEEEeCCCCeEEEeecc------------CCCccc-------------cCccceEEeCCCCeEE
Q 048181          105 TRQLYIADA---Y-SGLLVVGPNGRLATQLATG------------AEGQAF-------------HFLDGLDVDQGTGVVY  155 (310)
Q Consensus       105 ~g~LyVad~---~-~gi~~id~~~~~~~~~~~~------------~~g~~~-------------~~pndvavd~~~G~ly  155 (310)
                      +|.+||+|.   . .+|+++|+++++...+...            .+|..+             ..+|+|++++++..||
T Consensus       131 ~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          131 HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY  210 (343)
T ss_dssp             TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE
T ss_pred             CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEE
Confidence            789999997   3 4599999987765543321            112111             3579999999633799


Q ss_pred             EEcCCCccCccceeEeeeecCCCceEEEEcCC---CCe---------EEEeecCCCCCceeEEccCCCEEEEEecCCCeE
Q 048181          156 FTDASGVYDFRTIVKLNITNDSTGRLLSYNPR---SSQ---------VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRT  223 (310)
Q Consensus       156 vtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~---~g~---------~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I  223 (310)
                      +++...                 .++|+++.+   .+.         ++. ......|+||++|++|+ ||+++...++|
T Consensus       211 ~~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pdgia~d~~G~-l~va~~~~~~V  271 (343)
T 2qe8_A          211 LSPMHS-----------------TSMYRIKSADLSNLQLTDAELGSKIER-YSEKPICDGISIDKDHN-IYVGDLAHSAI  271 (343)
T ss_dssp             EEESSC-----------------SEEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCSCEEECTTCC-EEEEEGGGTEE
T ss_pred             EEeCCC-----------------CeEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCceEEECCCCC-EEEEccCCCeE
Confidence            998753                 367887631   010         111 12334799999999986 99999999999


Q ss_pred             EEEEe-cCCCCCceee-ecC--CCCCceeeeCCCCCCcEEEEEecC
Q 048181          224 LKYWL-RGPRANSFDI-INF--QAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       224 ~~~~~-~~~~~g~~~~-~~l--~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      .+|+. ++    +... ...  ...|+++++++  +|+||++....
T Consensus       272 ~~~d~~~G----~~~~~~~~~~~~~p~~va~~~--~g~l~v~~~~~  311 (343)
T 2qe8_A          272 GVITSADR----AYKLLVTDEKLSWTDSFNFGS--DGYLYFDCNQL  311 (343)
T ss_dssp             EEEETTTT----EEEEEEECGGGSCEEEEEECT--TSCEEEEECCG
T ss_pred             EEEECCCC----CEEEEEECCceecCCeeEECC--CCcEEEEeCcc
Confidence            99997 43    3333 222  24699999999  99999998754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=2.8e-16  Score=150.19  Aligned_cols=203  Identities=15%  Similarity=0.102  Sum_probs=136.9

Q ss_pred             CCCCcceEEE-------ccCCC-EEEEEeCCC------eEEEEECCC--ceEEeeeecCCCCccccCCCccccCCCCCCc
Q 048181           32 KAFGGESIAF-------EPVGG-AFYTGVADG------RILKYQAPD--GFTDFAFTTPTRSKAVCDGTTNLDLGPICRR   95 (310)
Q Consensus        32 ~~~~Pegia~-------d~~G~-l~~~d~~~g------~I~r~~~~g--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   95 (310)
                      .+..|.+|+|       +++|+ +|+++..++      .|+.++.+.  .+..-           .++    .......+
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~-----------~~~----~~v~~~~~  248 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDR-----------SDI----QLIAAYKQ  248 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTT-----------SCE----EEEEEESC
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeec-----------ccc----eeeccCCC
Confidence            4567999999       99998 777777653      377886543  33100           000    00013457


Q ss_pred             eeeEEEecCCCeEEEEeCCCc-EEEEeCC-------CCeE------------EEeeccCCCccccCccceEEeCCCCe-E
Q 048181           96 TFGLALHYATRQLYIADAYSG-LLVVGPN-------GRLA------------TQLATGAEGQAFHFLDGLDVDQGTGV-V  154 (310)
Q Consensus        96 P~Gla~d~~~g~LyVad~~~g-i~~id~~-------~~~~------------~~~~~~~~g~~~~~pndvavd~~~G~-l  154 (310)
                      |+|+++++.++.||+++...+ |+++|++       ++..            ..+....   ....|.+++++++ |+ |
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~---~~~~p~~ia~~p~-G~~l  324 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA---DPSWEFQIFIHPT-GKYA  324 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS---SSSCCEEEEECTT-SSEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecC---CCCCceEEEEcCC-CCEE
Confidence            999999866899999998876 9999987       5543            1222211   1246889999995 76 8


Q ss_pred             EEEcCCCccCccceeEeeeecCCCceEEEEcC--CCCeE---EEee---------------cCCCCCc-eeEEc------
Q 048181          155 YFTDASGVYDFRTIVKLNITNDSTGRLLSYNP--RSSQV---TVLL---------------RNLTGPA-GVAIS------  207 (310)
Q Consensus       155 yvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~--~~g~~---~~~~---------------~~l~~pn-GIa~~------  207 (310)
                      ||+|+..                 .+|++++.  .++.+   ..++               ..|..|. |++++      
T Consensus       325 YvaD~~~-----------------h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~  387 (496)
T 3kya_A          325 YFGVINN-----------------HYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTG  387 (496)
T ss_dssp             EEEETTT-----------------TEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCS
T ss_pred             EEEeCCC-----------------CEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccc
Confidence            9999865                 35666443  22222   2222               1456899 88887      


Q ss_pred             -cCCCEEEEEecCCCeEEEEEecCCCCCceee-e------------------c-C-----CCCCceeeeCCCCC-CcEEE
Q 048181          208 -VDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I------------------N-F-----QAKPHNIKRNPGLL-QTFWE  260 (310)
Q Consensus       208 -~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~------------------~-l-----~g~Pdgl~~d~~~d-G~l~v  260 (310)
                       ++| .|||+|+.++||++|+.+|.    +.. +                  + .     ...|.||++|+  + |+|||
T Consensus       388 ~~~g-~lyVaD~~N~rIr~i~~~G~----v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~--~~g~lyV  460 (496)
T 3kya_A          388 EEEY-DFYFVDRLNFCVRKVTPEGI----VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD--VKEMFYV  460 (496)
T ss_dssp             SCCE-EEEEEEGGGTEEEEECTTCB----EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET--TTTEEEE
T ss_pred             cCCC-eEEEEECCCCEEEEEeCCCC----EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC--CCCEEEE
Confidence             455 59999999999999986542    111 1                  1 0     12599999998  8 99999


Q ss_pred             EEecCCCCCCCCceeeEEECCCCcE
Q 048181          261 AAIITRQPAGTPVPIGQRISAFGAV  285 (310)
Q Consensus       261 a~~~~~~~~~~~~~~v~~~~~~G~~  285 (310)
                      |+..+.        +|.+++++|++
T Consensus       461 aD~~N~--------rIrki~~~~~~  477 (496)
T 3kya_A          461 HDQVGH--------TIRTISMEQEE  477 (496)
T ss_dssp             EETTTT--------EEEEEEECCCC
T ss_pred             EeCCCC--------EEEEEECCCCc
Confidence            999874        89999988763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.71  E-value=7.3e-15  Score=132.67  Aligned_cols=225  Identities=10%  Similarity=0.072  Sum_probs=145.8

Q ss_pred             ceeeeecceEEEeCCCCCCCcceEEEccCCCEEEEEeC-------CCeEEEEECCCceEEeeeecCCCCccccCCCcccc
Q 048181           16 RMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVA-------DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLD   88 (310)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~-------~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~   88 (310)
                      ....+++.+.+.++..   +|.+++++++|+.+|+...       ++.|+.++.+++......                 
T Consensus        26 ~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-----------------   85 (353)
T 3vgz_A           26 FSTQAAEEMLRKAVGK---GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI-----------------   85 (353)
T ss_dssp             -------CEEEEEEES---SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE-----------------
T ss_pred             ccccchhhhhhhhhcc---CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE-----------------
Confidence            3445566666676663   6999999999876666553       568999998754321110                 


Q ss_pred             CCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCC-----ccccCccceEEeCCCCeEEEEcCCCc
Q 048181           89 LGPICRRTFGLALHYATRQLYIADAYS-GLLVVGPNGRLATQLATGAEG-----QAFHFLDGLDVDQGTGVVYFTDASGV  162 (310)
Q Consensus        89 ~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g-----~~~~~pndvavd~~~G~lyvtd~~~~  162 (310)
                        .....|.++++++.++.+|+++... .|..+|.++++.........+     .....|++++++++++.+|+++..  
T Consensus        86 --~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--  161 (353)
T 3vgz_A           86 --HNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG--  161 (353)
T ss_dssp             --EESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES--
T ss_pred             --ecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC--
Confidence              1123588999984344599998754 499999988765332222111     111247899999965568988742  


Q ss_pred             cCccceeEeeeecCCCceEEEEcCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-eec
Q 048181          163 YDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-IIN  240 (310)
Q Consensus       163 ~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~~~  240 (310)
                                    .+++|+.+|..+++...... .-..|++++++|||++||+++. .++|+.++...   +... ...
T Consensus       162 --------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~---~~~~~~~~  223 (353)
T 3vgz_A          162 --------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTAD---NKILSRKK  223 (353)
T ss_dssp             --------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTT---TEEEEEEE
T ss_pred             --------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCC---CeEEEEEE
Confidence                          14789999998887766555 3446999999999999999876 78899988753   2221 111


Q ss_pred             -----CCCCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          241 -----FQAKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       241 -----l~g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                           ....|.++++++  +|+ +|++.....        .+..+|. +|+++..+..+
T Consensus       224 ~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~--------~v~~~d~~~~~~~~~~~~~  272 (353)
T 3vgz_A          224 LLDDGKEHFFINISLDT--ARQRAFITDSKAA--------EVLVVDTRNGNILAKVAAP  272 (353)
T ss_dssp             CCCSSSCCCEEEEEEET--TTTEEEEEESSSS--------EEEEEETTTCCEEEEEECS
T ss_pred             cCCCCCCcccceEEECC--CCCEEEEEeCCCC--------EEEEEECCCCcEEEEEEcC
Confidence                 123577899999  886 888876542        4555664 45666555554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=5.9e-15  Score=131.34  Aligned_cols=203  Identities=11%  Similarity=0.083  Sum_probs=140.1

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEEC-CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQA-PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      ++.+..+.  ..|.+++++++|++|+++..+++|+++++ ++..+.+....               .......|++++++
T Consensus        61 ~~~~~~~~--~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~---------------~~~~~~~~~~i~~d  123 (296)
T 3e5z_A           61 LSPEMHPS--HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF---------------EGKKLNSPNDVCLA  123 (296)
T ss_dssp             EEEEESSC--SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE---------------TTEECCCCCCEEEC
T ss_pred             eEEEECCC--CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc---------------CCCCCCCCCCEEEC
Confidence            44454443  57999999999998888877799999998 45554432100               01123468899998


Q ss_pred             cCCCeEEEEeC------------------CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccC
Q 048181          103 YATRQLYIADA------------------YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYD  164 (310)
Q Consensus       103 ~~~g~LyVad~------------------~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~  164 (310)
                       ++|+||++|.                  ..+|++++++ ++.+.+..     .+..||+++++++ |++++++...   
T Consensus       124 -~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----~~~~~~gi~~s~d-g~~lv~~~~~---  192 (296)
T 3e5z_A          124 -PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-----DRVKPNGLAFLPS-GNLLVSDTGD---  192 (296)
T ss_dssp             -TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----CCSSEEEEEECTT-SCEEEEETTT---
T ss_pred             -CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-----CCCCCccEEECCC-CCEEEEeCCC---
Confidence             7999999864                  2369999988 55554432     3567899999995 8777888653   


Q ss_pred             ccceeEeeeecCCCceEEEEcCC-CCeE----EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeee
Q 048181          165 FRTIVKLNITNDSTGRLLSYNPR-SSQV----TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII  239 (310)
Q Consensus       165 ~~~~~~~~~~~~~~G~l~~~d~~-~g~~----~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~  239 (310)
                                    ++|++++.+ ++++    +.+......|+||+++++|+ ||++.  .++|++|+.++.   .....
T Consensus       193 --------------~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~---~~~~~  252 (296)
T 3e5z_A          193 --------------NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGD---ELGRV  252 (296)
T ss_dssp             --------------TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSC---EEEEE
T ss_pred             --------------CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCC---EEEEE
Confidence                          567777754 3544    22212345799999999997 89998  789999987642   12223


Q ss_pred             cCCCCCceeeeC-CCCCC-cEEEEEecCCCCCCCCceeeEEECCCCcEE
Q 048181          240 NFQAKPHNIKRN-PGLLQ-TFWEAAIITRQPAGTPVPIGQRISAFGAVL  286 (310)
Q Consensus       240 ~l~g~Pdgl~~d-~~~dG-~l~va~~~~~~~~~~~~~~v~~~~~~G~~~  286 (310)
                      ..+..|.+++++ +  +| .||++...          .+.+++++.+-+
T Consensus       253 ~~~~~~~~~~f~~~--d~~~L~v~t~~----------~l~~~~~~~~~~  289 (296)
T 3e5z_A          253 LTPQTTSNLCFGGP--EGRTLYMTVST----------EFWSIETNVRGL  289 (296)
T ss_dssp             ECSSCCCEEEEEST--TSCEEEEEETT----------EEEEEECSCCBC
T ss_pred             ECCCCceeEEEECC--CCCEEEEEcCC----------eEEEEEcccccc
Confidence            333338999994 5  66 59999764          588898865543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.70  E-value=5.6e-15  Score=132.96  Aligned_cols=185  Identities=14%  Similarity=0.096  Sum_probs=128.8

Q ss_pred             CcceEEEccCCCEEEEEeCC--CeEEEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           35 GGESIAFEPVGGAFYTGVAD--GRILKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~--g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      .|.+++++++|++|+++..+  .+|++++.. ++.+.+...                  .....|.|++.. .++++|++
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~------------------~~~~~~~g~~~~-~~~~~~v~  133 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL------------------PDAIFLNGITPL-SDTQYLTA  133 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC------------------TTCSCEEEEEES-SSSEEEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC------------------CCccccCccccc-CCCcEEEE
Confidence            69999999999988888653  369998854 445443310                  223467899875 67889999


Q ss_pred             eCCC-cEEEEeCCCCeEEEe--ecc----CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          112 DAYS-GLLVVGPNGRLATQL--ATG----AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       112 d~~~-gi~~id~~~~~~~~~--~~~----~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      |... .|+++|+.+++.+.+  ...    .....+..||++  +++++.+||+|+..                 ++|++|
T Consensus       134 d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~-----------------~~I~~~  194 (306)
T 2p4o_A          134 DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK-----------------MLLLRI  194 (306)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT-----------------TEEEEE
T ss_pred             ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC-----------------CEEEEE
Confidence            9754 599999886533222  110    111246789998  55456899999753                 578888


Q ss_pred             cCCC-Ce---EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-e--ecCC-CCCceeeeC---CC
Q 048181          185 NPRS-SQ---VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-I--INFQ-AKPHNIKRN---PG  253 (310)
Q Consensus       185 d~~~-g~---~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~--~~l~-g~Pdgl~~d---~~  253 (310)
                      +.+. ++   .+.+. .+..|.||++++||+ |||++..+++|.+|+.+|    ... +  ...+ ..|.+++++   + 
T Consensus       195 ~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G----~~~~~~~~~~~~~~p~~~a~~g~~~-  267 (306)
T 2p4o_A          195 PVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR----STTIIAQAEQGVIGSTAVAFGQTEG-  267 (306)
T ss_dssp             EBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC----CEEEEECGGGTCTTEEEEEECCSTT-
T ss_pred             EeCCCCCCCccEEEe-ccCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC----CEEEEeecccccCCceEEEEecccC-
Confidence            8653 32   22332 346899999999996 899999999999998653    222 1  1222 469999997   6 


Q ss_pred             CC-CcEEEEEecC
Q 048181          254 LL-QTFWEAAIIT  265 (310)
Q Consensus       254 ~d-G~l~va~~~~  265 (310)
                       + +.|||+....
T Consensus       268 -d~~~LyVt~~~~  279 (306)
T 2p4o_A          268 -DCTAIYVVTNGG  279 (306)
T ss_dssp             -TTTEEEEEECTT
T ss_pred             -CCCEEEEECCCC
Confidence             6 5899998764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.67  E-value=1.5e-14  Score=132.54  Aligned_cols=177  Identities=14%  Similarity=0.106  Sum_probs=113.9

Q ss_pred             CCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC---
Q 048181           29 FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA---  104 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~---  104 (310)
                      +...|..|++|++.++|++|+++...|+|++++++++ ...+... +.            ........|+||++++.   
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~-~~------------v~~~g~~GllGia~~Pdf~~   93 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEV-PG------------VSPSGEGGLLGIALSPDYAS   93 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-TT------------CCCBTTBSEEEEEECTTHHH
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeeccc-Cc------------eeecCCCCceeeEecccccc
Confidence            3456899999999999998888877999999987643 3333211 00            01123457899999842   


Q ss_pred             CCeEEEEeC---CCcEEEEeCCCC--------eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCc--cCccceeEe
Q 048181          105 TRQLYIADA---YSGLLVVGPNGR--------LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGV--YDFRTIVKL  171 (310)
Q Consensus       105 ~g~LyVad~---~~gi~~id~~~~--------~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~--~~~~~~~~~  171 (310)
                      ++.|||+..   .++|.++..+.+        ..+++..........+.+.|++++ +|.|||+.....  ...++    
T Consensus        94 ~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd----  168 (347)
T 3das_A           94 DHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQD----  168 (347)
T ss_dssp             HCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTC----
T ss_pred             CCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccC----
Confidence            689999743   245888876541        123333333222345678899999 599999953211  00000    


Q ss_pred             eeecCCCceEEEEcCCCC--------eEEEeecCCCCCceeEEccCCCEEEEEecCCC---eEEEE
Q 048181          172 NITNDSTGRLLSYNPRSS--------QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN---RTLKY  226 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g--------~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~---~I~~~  226 (310)
                        .....|+|+|++++..        ..+++..++..|+||+|+|+|+ ||++|....   +|.++
T Consensus       169 --~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i  231 (347)
T 3das_A          169 --RKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAI  231 (347)
T ss_dssp             --TTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEE
T ss_pred             --CCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEE
Confidence              0123588999988633        2345667888889999998875 888887553   45544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.65  E-value=1.7e-15  Score=151.63  Aligned_cols=193  Identities=17%  Similarity=0.175  Sum_probs=134.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC-cEEEEeC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS-GLLVVGP  122 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~  122 (310)
                      ...|||+.  .+.|++++.++.....                   +......|.||++++.+++||++|... .|+++++
T Consensus       377 ~~~ll~~~--~~~I~~id~~~~~~~~-------------------~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~  435 (699)
T 1n7d_A          377 IAYLFFTN--RHEVRKMTLDRSEYTS-------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL  435 (699)
T ss_dssp             CCCBCCCC--TTC-CEECTTSCCEEC-------------------CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEES
T ss_pred             ceeEEecC--ccceEEEeCCCCccee-------------------eeccCcceEEEccccccCeEEEEecCCCeEEEEec
Confidence            34444443  4578888877543211                   123456899999996789999999764 4999998


Q ss_pred             CC----CeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee-cC
Q 048181          123 NG----RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL-RN  197 (310)
Q Consensus       123 ~~----~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~-~~  197 (310)
                      ++    .....+.    ...+..|.+||+|..+|+|||+|...                 ++|+++++++...+++. ..
T Consensus       436 ~g~~~~~~~~~~i----~~~~~~P~glavD~~~g~LY~tD~~~-----------------~~I~v~d~dg~~~~~l~~~~  494 (699)
T 1n7d_A          436 DRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWTDSVL-----------------GTVSVADTKGVKRKTLFREQ  494 (699)
T ss_dssp             CCCCC-CCCCCBC----CSCC--CCCEECCCSSSBCEECCTTT-----------------SCEEEEBSSSCCEEEECCCS
T ss_pred             CCCCCCcceEEEE----eCCCCCcceEEEEeeCCcEEEEeccC-----------------CeEEEEecCCCceEEEEeCC
Confidence            75    2211111    12356799999996569999999753                 67999998765555554 46


Q ss_pred             CCCCceeEEccCCCEEEEEecCC-CeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCce
Q 048181          198 LTGPAGVAISVDSSFLLVSEFTG-NRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVP  274 (310)
Q Consensus       198 l~~pnGIa~~~dg~~Lyv~d~~~-~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~  274 (310)
                      +..|+||+++|++++||+++... ++|++++++|...  ..+  ..+ ..|.||++|.. .++||+++....        
T Consensus       495 ~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~~~l-~~PnGlavd~~-~~~LY~aD~~~~--------  562 (699)
T 1n7d_A          495 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENI-QWPNGITLDLL-SGRLYWVDSKLH--------  562 (699)
T ss_dssp             SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESCSSC-SSCCCEEECTT-TCCEEEEETTTT--------
T ss_pred             CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEeCCC-CCccEEEEecc-CCEEEEEecCCC--------
Confidence            78999999999888899999876 8999999886421  122  333 46999999961 468999997753        


Q ss_pred             eeEEECCCCcEEEEEe
Q 048181          275 IGQRISAFGAVLDTIS  290 (310)
Q Consensus       275 ~v~~~~~~G~~~~~~~  290 (310)
                      .|.+++.+|.....+.
T Consensus       563 ~I~~~d~dG~~~~~~~  578 (699)
T 1n7d_A          563 SISSIDVNGGNRKTIL  578 (699)
T ss_dssp             EEEEECSSSSCCEEEC
T ss_pred             eEEEEccCCCceEEEE
Confidence            7888888886555443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.65  E-value=1.8e-14  Score=132.74  Aligned_cols=113  Identities=15%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             CCCCcceEEEccCCC-EEEEEeCCCeEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEEecC---CC
Q 048181           32 KAFGGESIAFEPVGG-AFYTGVADGRILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA---TR  106 (310)
Q Consensus        32 ~~~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~---~g  106 (310)
                      .+..|.+|+++++|+ +|+++. .|+|++++++++... +... +            .........|+||++++.   ++
T Consensus        16 ~l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~~~~~~~-~------------~v~~~g~~g~~gia~~pdf~~~g   81 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLITLR-GGELRHWQAGKGLSAPLSGV-P------------DVWAHGQGGLLDVVLAPDFAQSR   81 (353)
T ss_dssp             EESSEEEEEECSTTCCEEEEET-TTEEEEEETTTEECCCCBSC-C------------CCCCSTTCSEEEEEECTTHHHHC
T ss_pred             CCCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCceeeEecCC-c------------ccccCCCCCceeEEECCCCCCCC
Confidence            467899999999999 888875 699999998765421 2100 0            001122356899999843   79


Q ss_pred             eEEEEeCC--------CcEEEEeCCCC-----eEEEeeccCCC--ccccCccceEEeCCCCeEEEEcC
Q 048181          107 QLYIADAY--------SGLLVVGPNGR-----LATQLATGAEG--QAFHFLDGLDVDQGTGVVYFTDA  159 (310)
Q Consensus       107 ~LyVad~~--------~gi~~id~~~~-----~~~~~~~~~~g--~~~~~pndvavd~~~G~lyvtd~  159 (310)
                      .|||++..        ..|.+++.+.+     ..+.+......  ....++++|++++ +|.|||+..
T Consensus        82 ~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  148 (353)
T 2g8s_A           82 RIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEEC
T ss_pred             EEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEEC
Confidence            99999643        24888766432     22333333321  2345689999999 599999964

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.65  E-value=2.5e-14  Score=128.36  Aligned_cols=196  Identities=12%  Similarity=0.094  Sum_probs=133.7

Q ss_pred             EEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           25 TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        25 ~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      +.+..+.  ..|.++++|++|++|+++..+++|.+++++++.+.+....        .       ......|+.++++ +
T Consensus        79 ~~~~~~~--~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~--------~-------~~~~~~~~~i~~d-~  140 (305)
T 3dr2_A           79 DVLLDAT--AFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRY--------A-------GKRLNSPNDLIVA-R  140 (305)
T ss_dssp             EEEEESC--SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEE--------T-------TEECSCCCCEEEC-T
T ss_pred             EEEeCCC--CccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEecc--------C-------CCccCCCCCEEEC-C
Confidence            3444443  4699999999999888877778999999987665543110        0       1123568899998 7


Q ss_pred             CCeEEEEeC------------------CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCcc
Q 048181          105 TRQLYIADA------------------YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFR  166 (310)
Q Consensus       105 ~g~LyVad~------------------~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~  166 (310)
                      +|+||++|.                  ..+|+++++++++.+.+.      .+..||++++++++..||++|....    
T Consensus       141 dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------~~~~p~gl~~spdg~~lyv~~~~~~----  210 (305)
T 3dr2_A          141 DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------DLDHPNGLAFSPDEQTLYVSQTPEQ----  210 (305)
T ss_dssp             TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------EESSEEEEEECTTSSEEEEEECCC-----
T ss_pred             CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------cCCCCcceEEcCCCCEEEEEecCCc----
Confidence            999999863                  135999999877766553      3467999999996335999987521    


Q ss_pred             ceeEeeeecCCCceEEEEcCCCCeE---EEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC
Q 048181          167 TIVKLNITNDSTGRLLSYNPRSSQV---TVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ  242 (310)
Q Consensus       167 ~~~~~~~~~~~~G~l~~~d~~~g~~---~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~  242 (310)
                              ...+++|++++.+++.+   +.+.. ....|+||+++++|+ ||++.  .+.|++|+.++.   ......++
T Consensus       211 --------~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~---~~~~~~~~  276 (305)
T 3dr2_A          211 --------GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQ---LLGHIPTP  276 (305)
T ss_dssp             ----------CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSC---EEEEEECS
T ss_pred             --------CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCC---EEEEEECC
Confidence                    01135677777543322   12221 235799999999998 99987  456999987543   12123344


Q ss_pred             CCCceeeeCCCCCC-cEEEEEec
Q 048181          243 AKPHNIKRNPGLLQ-TFWEAAII  264 (310)
Q Consensus       243 g~Pdgl~~d~~~dG-~l~va~~~  264 (310)
                      ..|.++++++  +| .||++...
T Consensus       277 ~~~~~~~f~~--d~~~L~it~~~  297 (305)
T 3dr2_A          277 GTASNCTFDQ--AQQRLFITGGP  297 (305)
T ss_dssp             SCCCEEEECT--TSCEEEEEETT
T ss_pred             CceeEEEEeC--CCCEEEEEcCC
Confidence            4689999987  76 69998764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=2.1e-13  Score=122.99  Aligned_cols=190  Identities=11%  Similarity=0.124  Sum_probs=135.9

Q ss_pred             CcceEEEccCCCEEEEEe--CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           35 GGESIAFEPVGGAFYTGV--ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~--~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      .|.+++++++|+.+|+..  .+++|+.++...+......                  ......|.++++++.+..||+++
T Consensus       142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~l~~~~  203 (353)
T 3vgz_A          142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI------------------QNTGKMSTGLALDSEGKRLYTTN  203 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE------------------CCCCTTCCCCEEETTTTEEEEEC
T ss_pred             CCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe------------------cCCCCccceEEECCCCCEEEEEc
Confidence            388999999988555544  4788999998754332110                  01233588999985555689888


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ....|..+|..+++...........+...++++++++++..+|+++..                 ++.|+.+|..+++..
T Consensus       204 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          204 ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----------------AAEVLVVDTRNGNIL  266 (353)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----------------SSEEEEEETTTCCEE
T ss_pred             CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEE
Confidence            766799999988776433322122234567899999964568998754                 368999999877765


Q ss_pred             EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEEEecC
Q 048181          193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEAAIIT  265 (310)
Q Consensus       193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va~~~~  265 (310)
                      .... ...|.+++++|||++||++....+.|..++...   ++... ...+..|.++++++  ||+ ||++....
T Consensus       267 ~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~  335 (353)
T 3vgz_A          267 AKVA-APESLAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPTHPNSLALSA--DGKTLYVSVKQK  335 (353)
T ss_dssp             EEEE-CSSCCCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECCSEEEEEEECT--TSCEEEEEEECC
T ss_pred             EEEE-cCCCceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecCCCCCeEEEcC--CCCEEEEEEccc
Confidence            4443 345789999999999999999999999998753   32221 33445699999999  997 89998774

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=3.5e-14  Score=126.51  Aligned_cols=194  Identities=16%  Similarity=0.185  Sum_probs=134.5

Q ss_pred             CCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEe-eeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           34 FGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDF-AFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ..|.+++++++ |++|+++. .++|++++++++...+ ....               .......|.++++| ++|+||++
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~g~~~~~~~~~~---------------~~~~~~~~~~i~~d-~~g~l~v~  133 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTDGTFEEIAKKDS---------------EGRRMQGCNDCAFD-YEGNLWIT  133 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEET-TTEEEEEETTSCEEECCSBCT---------------TSCBCBCCCEEEEC-TTSCEEEE
T ss_pred             CCCceEEEecCCCcEEEEEC-CCCEEEEeCCCCEEEEEeccC---------------CCccccCCcCEEEC-CCCCEEEE
Confidence            46899999999 88777665 4589999988544432 2100               00123468899998 78999999


Q ss_pred             eCC----------------CcEEEEeCCCCeEEEeeccCCCccccCccceEEe----CCCC-eEEEEcCCCccCccceeE
Q 048181          112 DAY----------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVD----QGTG-VVYFTDASGVYDFRTIVK  170 (310)
Q Consensus       112 d~~----------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd----~~~G-~lyvtd~~~~~~~~~~~~  170 (310)
                      +..                .+|++++++ ++...+..     .+..|++++++    ++ | .+|+++...         
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----~~~~~~~i~~~~~~d~d-g~~l~v~~~~~---------  197 (314)
T 1pjx_A          134 APAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-----AFQFPNGIAVRHMNDGR-PYQLIVAETPT---------  197 (314)
T ss_dssp             ECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-----EESSEEEEEEEECTTSC-EEEEEEEETTT---------
T ss_pred             ecCcccccccccccccCCCCeEEEECCC-CCEEEecc-----CCCCcceEEEecccCCC-CCEEEEEECCC---------
Confidence            864                359999987 55544432     24568999999    95 7 799998643         


Q ss_pred             eeeecCCCceEEEEcCC-CCeEE---Eee---cCC-CCCceeEEccCCCEEEEEecCCCeEEEEEec-CCCCCceeeecC
Q 048181          171 LNITNDSTGRLLSYNPR-SSQVT---VLL---RNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLR-GPRANSFDIINF  241 (310)
Q Consensus       171 ~~~~~~~~G~l~~~d~~-~g~~~---~~~---~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~-~~~~g~~~~~~l  241 (310)
                              ++|+++|.+ +++..   .+.   ... ..|++|+++++|+ ||+++...++|.+|+.+ +.   ......+
T Consensus       198 --------~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~---~~~~~~~  265 (314)
T 1pjx_A          198 --------KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQ---PKMRIRC  265 (314)
T ss_dssp             --------TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBS---CSEEEEC
T ss_pred             --------CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCc---EeEEEeC
Confidence                    567777754 34321   111   111 5689999999996 99999889999999875 32   1111223


Q ss_pred             C-CCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECCC
Q 048181          242 Q-AKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       242 ~-g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                      + ..|.++++++  +|+ ||++....        ..+.+++++
T Consensus       266 ~~~~~~~i~~~~--dg~~l~v~~~~~--------~~l~~~~~~  298 (314)
T 1pjx_A          266 PFEKPSNLHFKP--QTKTIFVTEHEN--------NAVWKFEWQ  298 (314)
T ss_dssp             SSSCEEEEEECT--TSSEEEEEETTT--------TEEEEEECS
T ss_pred             CCCCceeEEECC--CCCEEEEEeCCC--------CeEEEEeCC
Confidence            3 5689999999  998 99998764        267788764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=3.1e-13  Score=122.74  Aligned_cols=183  Identities=10%  Similarity=0.040  Sum_probs=132.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ..|++++++ ++.+|++...++.|..+++.....  .+                     +....|.+|+++ .+|+|||+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i---------------------~~~~~p~~i~~~-~~g~lyv~  100 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI---------------------TGFTSPRYIHFL-SDEKAYVT  100 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE---------------------ECCSSEEEEEEE-ETTEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc---------------------CCCCCCcEEEEe-CCCeEEEE
Confidence            358999986 467788888789999999884322  22                     124579999996 56799999


Q ss_pred             e-CCCcEEEEeCCCCeEEEeeccCC-CccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          112 D-AYSGLLVVGPNGRLATQLATGAE-GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       112 d-~~~gi~~id~~~~~~~~~~~~~~-g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      + ....|.++|++++++........ ......|++++++  ++++|+++...                +++|.++|+.++
T Consensus       101 ~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~----------------~~~v~viD~~t~  162 (328)
T 3dsm_A          101 QIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSY----------------QNRILKIDTETD  162 (328)
T ss_dssp             EBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTT----------------CCEEEEEETTTT
T ss_pred             ECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCC----------------CCEEEEEECCCC
Confidence            9 45569999999887643222211 1234478999994  59999998531                368999999888


Q ss_pred             eEEEeecCCCCCceeEEccCCCEEEEEecCC----------CeEEEEEecCCCCCceee-ecCC--CCCceeeeCCCCCC
Q 048181          190 QVTVLLRNLTGPAGVAISVDSSFLLVSEFTG----------NRTLKYWLRGPRANSFDI-INFQ--AKPHNIKRNPGLLQ  256 (310)
Q Consensus       190 ~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~----------~~I~~~~~~~~~~g~~~~-~~l~--g~Pdgl~~d~~~dG  256 (310)
                      ++...+.....|++|++++||+ +|++....          ++|++++...   ++..- ..++  ..|.+|++++  +|
T Consensus       163 ~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t---~~v~~~~~~~~g~~p~~la~~~--d~  236 (328)
T 3dsm_A          163 KVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAET---FTVEKQFKFKLGDWPSEVQLNG--TR  236 (328)
T ss_dssp             EEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTT---TEEEEEEECCTTCCCEEEEECT--TS
T ss_pred             eEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCC---CeEEEEEecCCCCCceeEEEec--CC
Confidence            8766555556899999999997 88887765          7999998753   33321 2332  3699999998  76


Q ss_pred             -cEEEEEe
Q 048181          257 -TFWEAAI  263 (310)
Q Consensus       257 -~l~va~~  263 (310)
                       .||++..
T Consensus       237 ~~lyv~~~  244 (328)
T 3dsm_A          237 DTLYWINN  244 (328)
T ss_dssp             CEEEEESS
T ss_pred             CEEEEEcc
Confidence             5788754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.61  E-value=6e-13  Score=120.60  Aligned_cols=227  Identities=13%  Similarity=0.075  Sum_probs=140.1

Q ss_pred             CCCcceEEEccCCCEEEEEe-CCCeEEEEEC--CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           33 AFGGESIAFEPVGGAFYTGV-ADGRILKYQA--PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~-~~g~I~r~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ...|.+++++++|+.+|+.. .++.|..++.  ++....+.....       .+.. .........|.+++++ ++|++|
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~-------~~~~-p~~~~~~~~~~~~~~s-pdg~l~  155 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH-------SGHG-PRPEQDGSHIHYTDLT-PDNRLA  155 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-------CCCC-SSTTCSSCCEEEEEEC-TTSCEE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec-------CCCC-CCccccCCCceEEEEC-CCCcEE
Confidence            35799999999998555554 6777777764  344333221100       0000 0001123468899997 677899


Q ss_pred             EEeCCCc-EEEEeCC-CCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          110 IADAYSG-LLVVGPN-GRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       110 Vad~~~g-i~~id~~-~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      +++...+ |..++.+ +++...+... ....-..|++++++|+ |+ +|+++....               .-.+|.++.
T Consensus       156 v~~~~~~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spd-g~~l~v~~~~~~---------------~v~v~~~~~  218 (347)
T 3hfq_A          156 VIDLGSDKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPD-GQYAFLAGELSS---------------QIASLKYDT  218 (347)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTT-SSEEEEEETTTT---------------EEEEEEEET
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCC-CCEEEEEeCCCC---------------EEEEEEecC
Confidence            9987654 7777766 4554433211 1112235789999995 76 899875431               113455555


Q ss_pred             CCCeEEEeec--CC-------CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecC---CCCCceeeeCCC
Q 048181          187 RSSQVTVLLR--NL-------TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF---QAKPHNIKRNPG  253 (310)
Q Consensus       187 ~~g~~~~~~~--~l-------~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l---~g~Pdgl~~d~~  253 (310)
                      .+++.+.+..  ..       ..|.+++|+|||++||++....++|..|+++..  |..+. ..+   ...|.++++++ 
T Consensus       219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~sp-  295 (347)
T 3hfq_A          219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD--GHLTLIQQISTEGDFPRDFDLDP-  295 (347)
T ss_dssp             TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG--GCEEEEEEEECSSSCCCEEEECT-
T ss_pred             CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC--CcEEEeEEEecCCCCcCeEEECC-
Confidence            4465443221  11       347789999999999999999999999998632  33333 222   23699999999 


Q ss_pred             CCCc-EEEEEecCCCCCCCCceeeEEECCC-CcEE---EEEecCCCc
Q 048181          254 LLQT-FWEAAIITRQPAGTPVPIGQRISAF-GAVL---DTISFEAQY  295 (310)
Q Consensus       254 ~dG~-l~va~~~~~~~~~~~~~~v~~~~~~-G~~~---~~~~~p~~~  295 (310)
                       ||+ ||++....+      .-.+.++|++ |++.   ..+.+|.+.
T Consensus       296 -dg~~l~v~~~~~~------~v~v~~~d~~tg~l~~~~~~~~~p~p~  335 (347)
T 3hfq_A          296 -TEAFVVVVNQNTD------NATLYARDLTSGKLSLLQKDVTVPEGV  335 (347)
T ss_dssp             -TSSEEEEEETTTT------EEEEEEECTTTCCEEEEEEEEECTTEE
T ss_pred             -CCCEEEEEEcCCC------cEEEEEEeCCCCeEEecccceecCCCc
Confidence             996 788877643      1245566864 7766   456677663

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.61  E-value=1.5e-13  Score=124.56  Aligned_cols=195  Identities=13%  Similarity=0.088  Sum_probs=125.3

Q ss_pred             CCCCcceEEEccCCCEEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-e
Q 048181           32 KAFGGESIAFEPVGGAFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-Q  107 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~  107 (310)
                      ....|.+++++++|++|+++..  +++|+.++.+++. +.+...                 ......|.+++++ ++| .
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-----------------~~~~~~p~~~a~s-pdg~~   99 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTV-----------------VAPGTPPAYVAVD-EARQL   99 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEE-----------------EEESCCCSEEEEE-TTTTE
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeee-----------------ecCCCCCEEEEEC-CCCCE
Confidence            3468999999999996666653  5788888765432 222210                 0123578899998 555 5


Q ss_pred             EEEEeCCCc-EEEEeCC-CCeEEEeecc-CCC------ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          108 LYIADAYSG-LLVVGPN-GRLATQLATG-AEG------QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       108 LyVad~~~g-i~~id~~-~~~~~~~~~~-~~g------~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      ||+++...+ +..++.+ ++..+.+... ..+      .....++.++++|+ |++|+++...                 
T Consensus       100 l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd-g~l~v~~~~~-----------------  161 (347)
T 3hfq_A          100 VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD-NRLAVIDLGS-----------------  161 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT-SCEEEEETTT-----------------
T ss_pred             EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC-CcEEEEeCCC-----------------
Confidence            888885544 5556553 3344333211 111      12345778999995 8899998643                 


Q ss_pred             ceEEEEcCC-CCeEEEee----cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee----ecCC------C
Q 048181          179 GRLLSYNPR-SSQVTVLL----RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI----INFQ------A  243 (310)
Q Consensus       179 G~l~~~d~~-~g~~~~~~----~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~----~~l~------g  243 (310)
                      ++++.|+.+ ++++....    ..-..|++++|+|||++||+++...++|..|+++.. .+..+.    ...+      .
T Consensus       162 ~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          162 DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-TGAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESSCTTCCSCC
T ss_pred             CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCceEEeeeeeecCCCCCCCC
Confidence            455555544 45544322    223468899999999999999999999999988742 233322    2222      2


Q ss_pred             CCceeeeCCCCCCc-EEEEEecC
Q 048181          244 KPHNIKRNPGLLQT-FWEAAIIT  265 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~-l~va~~~~  265 (310)
                      .|.++++++  ||+ ||++....
T Consensus       241 ~~~~i~~sp--dG~~l~v~~~~~  261 (347)
T 3hfq_A          241 GAAAIRLSH--DGHFLYVSNRGY  261 (347)
T ss_dssp             EEEEEEECT--TSCEEEEEEETT
T ss_pred             cceeEEECC--CCCEEEEEeCCC
Confidence            377899999  996 78887643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=1.7e-13  Score=122.45  Aligned_cols=191  Identities=12%  Similarity=0.153  Sum_probs=130.1

Q ss_pred             EEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181           25 TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY  103 (310)
Q Consensus        25 ~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~  103 (310)
                      +.+..+   ..|.+++++++|++|++ . +++|++++++++ .+.+....               ......+|+++++| 
T Consensus        48 ~~~~~~---~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~---------------~~~~~~~~~di~~d-  106 (297)
T 3g4e_A           48 QRVTMD---APVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVD---------------NDKKNNRFNDGKVD-  106 (297)
T ss_dssp             EEEECS---SCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECC---------------TTCSSEEEEEEEEC-
T ss_pred             EEEeCC---CceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecC---------------CCCCCCCCCCEEEC-
Confidence            344455   36899999999995554 4 678999998754 44433110               01234578999998 


Q ss_pred             CCCeEEEEeCC------------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181          104 ATRQLYIADAY------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus       104 ~~g~LyVad~~------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~  171 (310)
                      ++|++|+++..            .+|+++++++ +...+..     .+..||++++++++..+|++|+..          
T Consensus       107 ~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~-----~~~~pngi~~spdg~~lyv~~~~~----------  170 (297)
T 3g4e_A          107 PAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD-----QVDISNGLDWSLDHKIFYYIDSLS----------  170 (297)
T ss_dssp             TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE-----EESBEEEEEECTTSCEEEEEEGGG----------
T ss_pred             CCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEee-----ccccccceEEcCCCCEEEEecCCC----------
Confidence            78999998631            2499999874 4443332     356799999999633699998753          


Q ss_pred             eeecCCCceEEEEcC--CCCeEE---Eee---cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC
Q 048181          172 NITNDSTGRLLSYNP--RSSQVT---VLL---RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ  242 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~--~~g~~~---~~~---~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~  242 (310)
                             ++|++++.  .+|.+.   .+.   .....|+||+++++|+ ||++....++|++|+.+.   |+... ..+|
T Consensus       171 -------~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~t---G~~~~~i~~p  239 (297)
T 3g4e_A          171 -------YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVT---GKRLQTVKLP  239 (297)
T ss_dssp             -------TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTT---CCEEEEEECS
T ss_pred             -------CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCC---ceEEEEEECC
Confidence                   56777653  455442   222   1235799999999996 999999999999998752   33221 3344


Q ss_pred             -CCCceeeeC-CCCCC-cEEEEEecC
Q 048181          243 -AKPHNIKRN-PGLLQ-TFWEAAIIT  265 (310)
Q Consensus       243 -g~Pdgl~~d-~~~dG-~l~va~~~~  265 (310)
                       ..|.++++. +  ++ .|||+....
T Consensus       240 ~~~~t~~~f~g~--d~~~L~vt~~~~  263 (297)
T 3g4e_A          240 VDKTTSCCFGGK--NYSEMYVTCARD  263 (297)
T ss_dssp             SSBEEEEEEESG--GGCEEEEEEBCT
T ss_pred             CCCceEEEEeCC--CCCEEEEEcCCc
Confidence             468899996 4  55 699998764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.59  E-value=1.5e-13  Score=126.66  Aligned_cols=203  Identities=14%  Similarity=0.147  Sum_probs=124.3

Q ss_pred             CCCCcceEEEccC----CCEEEEEeC---C----CeEEEEECCCc------eEEeeeecCCCCccccCCCccccCCCCCC
Q 048181           32 KAFGGESIAFEPV----GGAFYTGVA---D----GRILKYQAPDG------FTDFAFTTPTRSKAVCDGTTNLDLGPICR   94 (310)
Q Consensus        32 ~~~~Pegia~d~~----G~l~~~d~~---~----g~I~r~~~~g~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   94 (310)
                      ...+|.||+++++    |.||++...   +    ++|.|++.++.      .+++...-              . .....
T Consensus        71 g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~--------------~-~~~~h  135 (354)
T 3a9g_A           71 GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGI--------------P-GAYIH  135 (354)
T ss_dssp             TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEE--------------E-CCSSC
T ss_pred             CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcC--------------C-CCCCc
Confidence            4568999999997    677766653   3    78999987643      12211000              0 11234


Q ss_pred             ceeeEEEecCCCeEEEEeCC--------------CcEEEEeCCCC--------eEEEeeccCCCccccCccceEEeCCCC
Q 048181           95 RTFGLALHYATRQLYIADAY--------------SGLLVVGPNGR--------LATQLATGAEGQAFHFLDGLDVDQGTG  152 (310)
Q Consensus        95 ~P~Gla~d~~~g~LyVad~~--------------~gi~~id~~~~--------~~~~~~~~~~g~~~~~pndvavd~~~G  152 (310)
                      .+.+|+++ ++|+|||+...              ..|+++++++.        ..+.++     ..+..|+++++|+++|
T Consensus       136 ~~~~l~~~-pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a-----~G~rnp~Gla~d~~~g  209 (354)
T 3a9g_A          136 NGGRIRFG-PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWS-----YGHRNPQGIDWHRASG  209 (354)
T ss_dssp             CCCCEEEC-TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEE-----ECCSCCCEEEECTTTC
T ss_pred             CCceEEEC-CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEE-----EccCCcceEEEeCCCC
Confidence            67899998 79999998642              13999998763        112222     1356799999999559


Q ss_pred             eEEEEcCCCccCccceeEeeeecCCCceEEEEc------CCCCeEEE--ee-cCCCCCceeEE-------ccCCCEEEEE
Q 048181          153 VVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN------PRSSQVTV--LL-RNLTGPAGVAI-------SVDSSFLLVS  216 (310)
Q Consensus       153 ~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d------~~~g~~~~--~~-~~l~~pnGIa~-------~~dg~~Lyv~  216 (310)
                      +||++|......  +.+..+ .   .|.-|-+.      ...+....  .. .....|.|+++       ..+| .|||+
T Consensus       210 ~l~v~d~g~~~~--dei~~i-~---~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~  282 (354)
T 3a9g_A          210 VMVATEHGPVGH--DEVNII-L---KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIA  282 (354)
T ss_dssp             CEEEEECCSSSC--CEEEEE-C---TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEE
T ss_pred             CEEEEecCCCCC--cEEEEe-c---CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEE
Confidence            999999764210  000000 0   01111000      00010011  11 22346899999       3566 59999


Q ss_pred             ecCCCeEEEEEecCCC-CCce-ee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          217 EFTGNRTLKYWLRGPR-ANSF-DI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       217 d~~~~~I~~~~~~~~~-~g~~-~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      +...++|+++++++.. .... ++ .+..+.|.++++++  ||.||++...
T Consensus       283 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p--DG~lyv~~~~  331 (354)
T 3a9g_A          283 CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD--DGGILISTSN  331 (354)
T ss_dssp             ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT--TSCEEEEECT
T ss_pred             EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC--CCcEEEEEeC
Confidence            9999999999997531 1111 12 23345799999999  9999999874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.58  E-value=8.4e-14  Score=128.25  Aligned_cols=202  Identities=12%  Similarity=0.111  Sum_probs=125.2

Q ss_pred             CCCCcceEEEccC----CCEEEEEeCC-----CeEEEEECCCc-e---EEeeeecCCCCccccCCCccccCCCCCCceee
Q 048181           32 KAFGGESIAFEPV----GGAFYTGVAD-----GRILKYQAPDG-F---TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFG   98 (310)
Q Consensus        32 ~~~~Pegia~d~~----G~l~~~d~~~-----g~I~r~~~~g~-~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~G   98 (310)
                      ...+|.||+++++    +.+|+++..+     ++|.|++.++. .   +.+....+             ........|.+
T Consensus        73 g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p-------------~~~~~~h~~~~  139 (352)
T 2ism_A           73 GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIP-------------ARPHGLHSGGR  139 (352)
T ss_dssp             TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEEC-------------CCTTCCCCCCC
T ss_pred             CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCC-------------CCCCCCcCCce
Confidence            4578999999997    6777776643     78999987643 1   12211000             00012346789


Q ss_pred             EEEecCCCeEEEEeCC--------------CcEEEEeCCCC-------------eEEEeeccCCCccccCccceEEeCCC
Q 048181           99 LALHYATRQLYIADAY--------------SGLLVVGPNGR-------------LATQLATGAEGQAFHFLDGLDVDQGT  151 (310)
Q Consensus        99 la~d~~~g~LyVad~~--------------~gi~~id~~~~-------------~~~~~~~~~~g~~~~~pndvavd~~~  151 (310)
                      |+++ ++|.|||++..              ..|+++++++.             ..+.++     ..+..|+++++|+++
T Consensus       140 l~~~-pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-----~G~rnp~g~a~d~~~  213 (352)
T 2ism_A          140 IAFG-PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYS-----LGHRNPQGLAWHPKT  213 (352)
T ss_dssp             EEEC-TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEE-----ECCSEECCCEECTTT
T ss_pred             EEEC-CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEE-----EcCCCcccEEEECCC
Confidence            9998 78999999642              13999998751             111111     135679999999956


Q ss_pred             CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC--------------C--eEEEeecCCCCCceeEEccCCCEEEE
Q 048181          152 GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS--------------S--QVTVLLRNLTGPAGVAISVDSSFLLV  215 (310)
Q Consensus       152 G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~--------------g--~~~~~~~~l~~pnGIa~~~dg~~Lyv  215 (310)
                      |+||++|...... .+        .+...|.++.+..              +  ...........|.||++. +| .||+
T Consensus       214 g~l~v~d~g~~~~-~~--------~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~-~G-~l~v  282 (352)
T 2ism_A          214 GELFSSEHGPSGE-QG--------YGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF-RG-DLYV  282 (352)
T ss_dssp             CCEEEEEECC---------------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE-TT-EEEE
T ss_pred             CCEEEEEcCCCCC-CC--------CCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE-CC-EEEE
Confidence            9999999754210 00        0011233332211              0  011111233468999994 56 5999


Q ss_pred             EecCCCeEEEEEecCCCC----Ccee-eecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          216 SEFTGNRTLKYWLRGPRA----NSFD-IINFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       216 ~d~~~~~I~~~~~~~~~~----g~~~-~~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ++...++|+++++++...    +..+ +..-.+.|.++++++  ||.||++....
T Consensus       283 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p--dG~lyv~~~~~  335 (352)
T 2ism_A          283 AGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP--DGALYVTTSNR  335 (352)
T ss_dssp             EETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT--TSCEEEEECST
T ss_pred             EECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC--CCcEEEEEeCC
Confidence            999999999999875421    1111 122236799999999  99999998764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=2.5e-12  Score=114.28  Aligned_cols=226  Identities=11%  Similarity=0.046  Sum_probs=153.9

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ..+.+++++++|++|+  ..+++|+.++++|+. .+....                 .......+..+. .+|+++|++.
T Consensus        37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~-~W~~~~-----------------~~~~~~~~~~~~-~dG~~lv~~~   95 (276)
T 3no2_A           37 WECNSVAATKAGEILF--SYSKGAKMITRDGRE-LWNIAA-----------------PAGCEMQTARIL-PDGNALVAWC   95 (276)
T ss_dssp             CCCCEEEECTTSCEEE--ECBSEEEEECTTSCE-EEEEEC-----------------CTTCEEEEEEEC-TTSCEEEEEE
T ss_pred             CCCcCeEECCCCCEEE--eCCCCEEEECCCCCE-EEEEcC-----------------CCCccccccEEC-CCCCEEEEec
Confidence            3688999999999777  347889999997653 232110                 111234566774 7899999876


Q ss_pred             C-C-cEEEEeCCCCeEEEeeccCC-CccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          114 Y-S-GLLVVGPNGRLATQLATGAE-GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       114 ~-~-gi~~id~~~~~~~~~~~~~~-g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      . . .++.+++++..+..+.-... ..+...+.++++++ +|++++++..                 +++|+.+|++ |+
T Consensus        96 ~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~-----------------~~~v~~~d~~-G~  156 (276)
T 3no2_A           96 GHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFA-----------------TSEVREIAPN-GQ  156 (276)
T ss_dssp             STTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETT-----------------TTEEEEECTT-SC
T ss_pred             CCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecC-----------------CCEEEEECCC-CC
Confidence            5 4 48889987755544421111 12445688999999 5999999864                 3789999987 76


Q ss_pred             EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec-CCCCCceee--ecCC----CCCceeeeCCCCCCcEEEEEe
Q 048181          191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR-GPRANSFDI--INFQ----AKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~-~~~~g~~~~--~~l~----g~Pdgl~~d~~~dG~l~va~~  263 (310)
                      ..-....-..|.++++.++|+ ++|++..+++|+.++.+ |..  ..++  ..++    ..|.++.+.+  +|++|++.+
T Consensus       157 ~~w~~~~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~l~~~~~~~~~~--~G~i~v~~~  231 (276)
T 3no2_A          157 LLNSVKLSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRI--VRRVNANDIEGVQLFFVAQLFPLQ--NGGLYICNW  231 (276)
T ss_dssp             EEEEEECSSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCE--EEEEEGGGSBSCCCSEEEEEEECT--TSCEEEEEE
T ss_pred             EEEEEECCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcE--EEEecCCCCCCccccccccceEcC--CCCEEEEec
Confidence            544333335788999999997 77888888999999876 321  1122  1222    2489999999  999999997


Q ss_pred             cCCCC--CCCCceeeEEECCCCcEEEEEecCCCccccceeEEEec
Q 048181          264 ITRQP--AGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPF  306 (310)
Q Consensus       264 ~~~~~--~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~  306 (310)
                      .+...  .....++++.+|++|+++=.+.....+  .++|+|+..
T Consensus       232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~--~~~~~~~~~  274 (276)
T 3no2_A          232 QGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF--GMISTICPI  274 (276)
T ss_dssp             CTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS--CCCCEEEEE
T ss_pred             cCccccccccCCceEEEECCCCCEEEEecCcccc--cceeeeeec
Confidence            43100  000024799999999998887776554  578877654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.58  E-value=2.6e-13  Score=122.24  Aligned_cols=199  Identities=16%  Similarity=0.204  Sum_probs=135.0

Q ss_pred             CCcceEEEccCCCEEEEEeCC----CeEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           34 FGGESIAFEPVGGAFYTGVAD----GRILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~----g~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      ..|.+++++++|++|+++..+    ++|++++++++... +...                 ......|.+++++ ++|++
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------------~~~~~~~~~i~~d-~~g~l  148 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-----------------LSTAYCIDDMVFD-SKGGF  148 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-----------------SSSCCCEEEEEEC-TTSCE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-----------------CccCCcccceEEC-CCCCE
Confidence            469999999999988887665    68999998865322 2100                 0123478899998 68999


Q ss_pred             EEEeCC-------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEeeeecCCCce
Q 048181          109 YIADAY-------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       109 yVad~~-------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      |+++..       .+|+++++++++...+..     .+..|++++++++ | .+|+++...                 ++
T Consensus       149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~i~~~~d-g~~l~v~~~~~-----------------~~  205 (333)
T 2dg1_A          149 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----NISVANGIALSTD-EKVLWVTETTA-----------------NR  205 (333)
T ss_dssp             EEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----EESSEEEEEECTT-SSEEEEEEGGG-----------------TE
T ss_pred             EEEeccccccCCCceEEEEeCCCCEEEEeec-----CCCcccceEECCC-CCEEEEEeCCC-----------------Ce
Confidence            998763       359999988766655432     2456899999995 6 599987532                 56


Q ss_pred             EEEEcCCC-C-eEEEe-----e--cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCC-------C
Q 048181          181 LLSYNPRS-S-QVTVL-----L--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQA-------K  244 (310)
Q Consensus       181 l~~~d~~~-g-~~~~~-----~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g-------~  244 (310)
                      |+++|.++ + ..+.+     .  .+...|++|+++++|+ ||++....++|++|+.++.   .......+.       .
T Consensus       206 i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~---~~~~~~~~~~~~g~~~~  281 (333)
T 2dg1_A          206 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY---PIGQILIPGRDEGHMLR  281 (333)
T ss_dssp             EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC---EEEEEECTTGGGTCSCB
T ss_pred             EEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCC---EEEEEEcCCCccccccC
Confidence            77777642 2 22211     1  1224789999999997 9999988899999987532   121122221       5


Q ss_pred             CceeeeCCCCCC-cEEEEEecCCCCCCCCceeeEEECCC
Q 048181          245 PHNIKRNPGLLQ-TFWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       245 Pdgl~~d~~~dG-~l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                      |.++++++  || .||++......   ...+.+.+++.+
T Consensus       282 ~~~~~~~~--dg~~L~v~~~~g~~---~~~~~l~~~~~~  315 (333)
T 2dg1_A          282 STHPQFIP--GTNQLIICSNDIEM---GGGSMLYTVNGF  315 (333)
T ss_dssp             CCEEEECT--TSCEEEEEEECGGG---TCCEEEEEEECS
T ss_pred             cceEEECC--CCCEEEEEeCccCC---CCCceEEEEecc
Confidence            89999998  86 79998776310   011356666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.54  E-value=9.4e-12  Score=109.91  Aligned_cols=199  Identities=9%  Similarity=0.058  Sum_probs=132.7

Q ss_pred             eeecceEEEeCCCCCCCcceEEEccCCCEEEEEe--CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCce
Q 048181           19 FSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGV--ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT   96 (310)
Q Consensus        19 ~~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~--~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P   96 (310)
                      .....+++++.+.. .+|+|++++++|.||++.-  ..++|++++...+...-..                . ......+
T Consensus         7 ~~~~vv~~~p~~~~-~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i----------------~-l~~~~fg   68 (266)
T 2iwa_A            7 YIVEVLNEFPHDPY-AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH----------------K-MDDSYFG   68 (266)
T ss_dssp             EEEEEEEEEECCTT-CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE----------------E-CCTTCCE
T ss_pred             cCceEEEEEECCCC-CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE----------------e-cCCCcce
Confidence            34567788888743 4689999999887665543  3689999999854321110                0 0122345


Q ss_pred             eeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181           97 FGLALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      .|++++  +++||+++...+ ++++|+++.+...-.. . +    .|.+..+.++++++|++|.                
T Consensus        69 eGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~-~-g----~~~g~glt~Dg~~l~vs~g----------------  124 (266)
T 2iwa_A           69 EGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFT-H-Q----MKDGWGLATDGKILYGSDG----------------  124 (266)
T ss_dssp             EEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEE-C-C----SSSCCEEEECSSSEEEECS----------------
T ss_pred             EEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEE-C-C----CCCeEEEEECCCEEEEECC----------------
Confidence            688886  679999987654 9999998865432111 1 1    1345555655678999983                


Q ss_pred             CCCceEEEEcCCCCeEEEeec------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCC-CceeeecC-------
Q 048181          176 DSTGRLLSYNPRSSQVTVLLR------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA-NSFDIINF-------  241 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~~------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~-g~~~~~~l-------  241 (310)
                        +++|+.+|+.+.++...+.      .+..||++.+. || .||++....+.|.++|+...+. +...+.++       
T Consensus       125 --s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~  200 (266)
T 2iwa_A          125 --TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDE  200 (266)
T ss_dssp             --SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHT
T ss_pred             --CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccc
Confidence              2689999998866543221      34579999998 77 6999999999999999864211 11111111       


Q ss_pred             --C--CCCceeeeCCCCCC-cEEEEEecC
Q 048181          242 --Q--AKPHNIKRNPGLLQ-TFWEAAIIT  265 (310)
Q Consensus       242 --~--g~Pdgl~~d~~~dG-~l~va~~~~  265 (310)
                        +  ..|.||++++  +| .+||+....
T Consensus       201 ~~~~~~v~nGIa~~~--~~~~lfVTgk~~  227 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQ--ENKRIFVTGKLW  227 (266)
T ss_dssp             TCTTCCCEEEEEEET--TTTEEEEEETTC
T ss_pred             cccccCceEEEEEcC--CCCEEEEECCCC
Confidence              1  2578999998  77 699998654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.52  E-value=8.9e-12  Score=109.42  Aligned_cols=209  Identities=11%  Similarity=0.096  Sum_probs=136.9

Q ss_pred             EeCCCCCCCcceEEEccCCC-EEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           27 ILFPPKAFGGESIAFEPVGG-AFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        27 ~~~~~~~~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      -++|+-...+.|++++++++ ||.+...+++|++++.+++.. .+..                   .....+-||+++ .
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l-------------------~g~~D~EGIa~~-~   79 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPL-------------------DFVKDLETIEYI-G   79 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEEC-------------------SSCSSEEEEEEC-S
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEec-------------------CCCCChHHeEEe-C
Confidence            46777667899999998754 666678899999999996643 2211                   223568899997 7


Q ss_pred             CCeEEEEeCCC-cEEEEeCCC-CeEEEe--ec-cC-CCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          105 TRQLYIADAYS-GLLVVGPNG-RLATQL--AT-GA-EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       105 ~g~LyVad~~~-gi~~id~~~-~~~~~~--~~-~~-~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      ++++||++... +++.++... +.+..+  .. .. ....=....++|+|+++++||++.-..                .
T Consensus        80 ~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~----------------p  143 (255)
T 3qqz_A           80 DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN----------------P  143 (255)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS----------------S
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC----------------C
Confidence            88888887554 466655332 222211  11 11 111112247999999766999975332                2


Q ss_pred             ceEEEEcC--CCCeEEEeec-------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC------
Q 048181          179 GRLLSYNP--RSSQVTVLLR-------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ------  242 (310)
Q Consensus       179 G~l~~~d~--~~g~~~~~~~-------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~------  242 (310)
                      ..||.++.  .+..++....       .+..+-+|+++|..++||+....+++|..++.+|.......+ .+..      
T Consensus       144 ~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~  223 (255)
T 3qqz_A          144 IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNI  223 (255)
T ss_dssp             EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCC
T ss_pred             ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCccccc
Confidence            35777762  2223333311       345689999999999999999999999999987642221222 1211      


Q ss_pred             CCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181          243 AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       243 g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                      .-|.||++|+  +|+|||+.-.+         ...+|.++
T Consensus       224 ~qpEGia~d~--~G~lyIvsE~n---------~~y~f~~~  252 (255)
T 3qqz_A          224 KQAEGVAMDA--SGNIYIVSEPN---------RFYRFTPQ  252 (255)
T ss_dssp             CSEEEEEECT--TCCEEEEETTT---------EEEEEEC-
T ss_pred             CCCCeeEECC--CCCEEEEcCCc---------eEEEEEec
Confidence            2589999999  99999997665         67787764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.51  E-value=2.9e-12  Score=113.21  Aligned_cols=166  Identities=14%  Similarity=0.080  Sum_probs=121.2

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY  103 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~  103 (310)
                      +++++++. -..+||++++ .+.+|++...++++..++.+.... +...               .. . .+.+.||+.| 
T Consensus        57 ~~~i~l~~-~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v-~~~i---------------~~-g-~~~g~glt~D-  115 (266)
T 2iwa_A           57 ENIHKMDD-SYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSN-IKNF---------------TH-Q-MKDGWGLATD-  115 (266)
T ss_dssp             EEEEECCT-TCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEE-EEEE---------------EC-C-SSSCCEEEEC-
T ss_pred             EEEEecCC-CcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcE-EEEE---------------EC-C-CCCeEEEEEC-
Confidence            45566664 3578999998 357888888899999999875322 2110               00 1 1345667764 


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEE-EeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          104 ATRQLYIADAYSGLLVVGPNGRLAT-QLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       104 ~~g~LyVad~~~gi~~id~~~~~~~-~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                       .++||+++..+.|..+|+++.++. .+.-...+.++.+||.+.+.  +|.+|++...                 .+.|.
T Consensus       116 -g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~-----------------~~~V~  175 (266)
T 2iwa_A          116 -GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQ-----------------TDCIA  175 (266)
T ss_dssp             -SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-----------------SSEEE
T ss_pred             -CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCC-----------------CCeEE
Confidence             788999996566999999986543 22222235677789999988  3899998754                 25899


Q ss_pred             EEcCCCCeEEEeec--CC------------CCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          183 SYNPRSSQVTVLLR--NL------------TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       183 ~~d~~~g~~~~~~~--~l------------~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      ++|+.++++...++  ++            ..|||||++|+++.+||+....++|+.+++..
T Consensus       176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            99999998765443  22            47899999999999999999999999999864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.48  E-value=6.5e-12  Score=110.11  Aligned_cols=163  Identities=17%  Similarity=0.191  Sum_probs=120.6

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA  100 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla  100 (310)
                      .+++++++.. ...||++++. +.+|.+.-.+++++.+|++...  .++.                     ..+.+.|++
T Consensus        77 v~~~~~l~~~-~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~---------------------~~~eG~glt  133 (262)
T 3nol_A           77 TLQQIELGKR-YFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQVRSFN---------------------YDGEGWGLT  133 (262)
T ss_dssp             EEEEEECCTT-CCEEEEEEET-TEEEEEESSSSEEEEEETTTCCEEEEEE---------------------CSSCCCCEE
T ss_pred             EEEEEecCCc-cceeEEEEeC-CEEEEEEeeCCEEEEEECccCcEEEEEE---------------------CCCCceEEe
Confidence            3455677643 4579999873 4777777789999999987432  2222                     123557888


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeEEEeec-cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181          101 LHYATRQLYIADAYSGLLVVGPNGRLATQLAT-GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       101 ~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~-~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      .|  +++||++|....|..+|+++.++..-.. ...+.++..+|.+...  +|+||++....                 .
T Consensus       134 ~d--g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~-----------------~  192 (262)
T 3nol_A          134 HN--DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQT-----------------N  192 (262)
T ss_dssp             EC--SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTS-----------------S
T ss_pred             cC--CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccC-----------------C
Confidence            74  6899999976679999999866532222 2346788889999987  49999987542                 5


Q ss_pred             eEEEEcCCCCeEEEeecC-------------CCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          180 RLLSYNPRSSQVTVLLRN-------------LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       180 ~l~~~d~~~g~~~~~~~~-------------l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      .|+++|+.+|++...++-             ...|||||++|+++.|||+-..=.+++.+.+.
T Consensus       193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            799999999988765431             23789999999999999998877788887764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.48  E-value=4.7e-11  Score=106.47  Aligned_cols=234  Identities=12%  Similarity=-0.002  Sum_probs=143.5

Q ss_pred             eEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCeEEEEECCCceEE--eeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181           24 FTKILFPPKAFGGESIAFEPVGG-AFYTGVADGRILKYQAPDGFTD--FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA  100 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla  100 (310)
                      ++++.+++....|.+++++++|+ +|+++..+++|+.++..++...  +....               .......|.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~   88 (337)
T 1pby_B           24 DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST---------------PEERVKSLFGAA   88 (337)
T ss_dssp             EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB---------------TTEEEECTTCEE
T ss_pred             EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC---------------cccccccccceE
Confidence            44556664211499999999996 4556666789999998744321  21000               000112577899


Q ss_pred             EecCCCeEEEEe------------CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCC-ccCccc
Q 048181          101 LHYATRQLYIAD------------AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASG-VYDFRT  167 (310)
Q Consensus       101 ~d~~~g~LyVad------------~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~-~~~~~~  167 (310)
                      +++....||+++            ....|..+|.++++.......  +   ..|+++++++++..+|+++..- .+....
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~~~~i~~~d~~~  163 (337)
T 1pby_B           89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGLGRDLHVMDPEA  163 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEESSSEEEEETTT
T ss_pred             ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEeCCeEEEEECCC
Confidence            974344788885            235699999988765432221  1   2478899999533488874210 011100


Q ss_pred             e-eEeeee---------cCCCc----------------------------------eEEEEcCCCCeEEEe--ecCCCCC
Q 048181          168 I-VKLNIT---------NDSTG----------------------------------RLLSYNPRSSQVTVL--LRNLTGP  201 (310)
Q Consensus       168 ~-~~~~~~---------~~~~G----------------------------------~l~~~d~~~g~~~~~--~~~l~~p  201 (310)
                      . ....+.         ..++|                                  .|+.+|..++++...  ......|
T Consensus       164 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  243 (337)
T 1pby_B          164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY  243 (337)
T ss_dssp             TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCce
Confidence            0 000000         00111                                  467888887766421  1223468


Q ss_pred             ceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-eecCCCCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEE
Q 048181          202 AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-IINFQAKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRI  279 (310)
Q Consensus       202 nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~  279 (310)
                      ++++++|||++||++   .++|++|++..   ++.. .......|.++++++  +|+ ||++...         ..+..+
T Consensus       244 ~~~~~s~dg~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~---------~~i~v~  306 (337)
T 1pby_B          244 FSTAVNPAKTRAFGA---YNVLESFDLEK---NASIKRVPLPHSYYSVNVST--DGSTVWLGGAL---------GDLAAY  306 (337)
T ss_dssp             EEEEECTTSSEEEEE---ESEEEEEETTT---TEEEEEEECSSCCCEEEECT--TSCEEEEESBS---------SEEEEE
T ss_pred             eeEEECCCCCEEEEe---CCeEEEEECCC---CcCcceecCCCceeeEEECC--CCCEEEEEcCC---------CcEEEE
Confidence            899999999999998   48999998753   2221 133345699999999  996 7777443         368888


Q ss_pred             CC-CCcEEEEEecCCC
Q 048181          280 SA-FGAVLDTISFEAQ  294 (310)
Q Consensus       280 ~~-~G~~~~~~~~p~~  294 (310)
                      |. .|+++..+..+.+
T Consensus       307 d~~~~~~~~~~~~~~~  322 (337)
T 1pby_B          307 DAETLEKKGQVDLPGN  322 (337)
T ss_dssp             ETTTCCEEEEEECGGG
T ss_pred             ECcCCcEEEEEEcCCC
Confidence            95 6899999988854

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.47  E-value=1.2e-11  Score=107.42  Aligned_cols=164  Identities=15%  Similarity=0.168  Sum_probs=122.4

Q ss_pred             cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeE
Q 048181           22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGL   99 (310)
Q Consensus        22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gl   99 (310)
                      ..+++++++.. ..+||++++ ++++|.++-.+++++.++++...  .++.                     ..+.+.||
T Consensus        54 kv~~~~~l~~~-~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~---------------------~~~~Gwgl  110 (243)
T 3mbr_X           54 RILQRAEVPPP-YFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFR---------------------YPGEGWAL  110 (243)
T ss_dssp             CEEEEEECCTT-CCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE---------------------CSSCCCEE
T ss_pred             CEEEEEeCCCC-cceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEe---------------------CCCCceEE
Confidence            34566777754 467999987 46788888889999999987532  2222                     12356788


Q ss_pred             EEecCCCeEEEEeCCCcEEEEeCCCCeEE-EeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          100 ALHYATRQLYIADAYSGLLVVGPNGRLAT-QLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       100 a~d~~~g~LyVad~~~gi~~id~~~~~~~-~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      +.|  +++||++|....|..+|+++.++. .+.-...+.++.++|.+...  +|+||+.....                 
T Consensus       111 t~d--g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s-----------------  169 (243)
T 3mbr_X          111 TSD--DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLT-----------------  169 (243)
T ss_dssp             EEC--SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTT-----------------
T ss_pred             eeC--CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCC-----------------
Confidence            874  789999998767999999986553 22222356678889999987  59999887542                 


Q ss_pred             ceEEEEcCCCCeEEEeec--------------CCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          179 GRLLSYNPRSSQVTVLLR--------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~~--------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      ..|.++|+.+|++...++              ....+||||++|+++.|||+-..=.+++.+.+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            479999999998865543              123789999999999999998877888888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.46  E-value=1.3e-11  Score=108.22  Aligned_cols=162  Identities=15%  Similarity=0.168  Sum_probs=119.9

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA  100 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla  100 (310)
                      .++++ ++.. ...||++++. +.+|.+.-.+++++.+|++....  ++.                     ..+.+.||+
T Consensus        87 v~~~~-l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~---------------------~~~eGwGLt  142 (268)
T 3nok_A           87 PVWME-RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR---------------------YSGEGWGLC  142 (268)
T ss_dssp             CSEEE-ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE---------------------CSSCCCCEE
T ss_pred             EEeEE-CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe---------------------CCCceeEEe
Confidence            34555 6643 4579999874 58888888899999999885322  222                     123467899


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeEEE-eeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181          101 LHYATRQLYIADAYSGLLVVGPNGRLATQ-LATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       101 ~d~~~g~LyVad~~~gi~~id~~~~~~~~-~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      .|  +++||++|....|..+|+++.++.. +.-...+.++.++|.+...  +|+||++....                 .
T Consensus       143 ~D--g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s-----------------~  201 (268)
T 3nok_A          143 YW--NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHS-----------------S  201 (268)
T ss_dssp             EE--TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTC-----------------S
T ss_pred             cC--CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCC-----------------C
Confidence            86  6899999976679999999876532 2222356678889999988  48999987542                 5


Q ss_pred             eEEEEcCCCCeEEEeec--------------CCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          180 RLLSYNPRSSQVTVLLR--------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       180 ~l~~~d~~~g~~~~~~~--------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      .|.++|+.+|++...++              ....+||||++|+++.|||+-..=.+++.+.++
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~~  265 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRLD  265 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEEE
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEEE
Confidence            79999999998865543              113789999999999999998777788877663

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.46  E-value=4.8e-11  Score=106.84  Aligned_cols=186  Identities=10%  Similarity=0.036  Sum_probs=120.3

Q ss_pred             CCcceEEEccCCC-EEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceee-EEEecCCCe-EE
Q 048181           34 FGGESIAFEPVGG-AFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFG-LALHYATRQ-LY  109 (310)
Q Consensus        34 ~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~G-la~d~~~g~-Ly  109 (310)
                      ..| +++++++|+ +|+++..+++|+.++..++.. ....                   .....|.. ++++ ++|+ ||
T Consensus        41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-------------------~~~~~~~~~~~~s-~dg~~l~   99 (331)
T 3u4y_A           41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-------------------QEGQSSMADVDIT-PDDQFAV   99 (331)
T ss_dssp             CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-------------------EECSSCCCCEEEC-TTSSEEE
T ss_pred             Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-------------------ccCCCCccceEEC-CCCCEEE
Confidence            456 999999998 555566688999999875432 1110                   12235666 9997 4554 66


Q ss_pred             EEeCC-C--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEeeeecCCC-ceEEEE
Q 048181          110 IADAY-S--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKLNITNDST-GRLLSY  184 (310)
Q Consensus       110 Vad~~-~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~~~~~~~~-G~l~~~  184 (310)
                      ++... .  .|..+|.++++.......     ...|++++++|+ | .+|+++....               . -.+|.+
T Consensus       100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~spd-g~~l~~~~~~~~---------------~~i~~~~~  158 (331)
T 3u4y_A          100 TVTGLNHPFNMQSYSFLKNKFISTIPI-----PYDAVGIAISPN-GNGLILIDRSSA---------------NTVRRFKI  158 (331)
T ss_dssp             ECCCSSSSCEEEEEETTTTEEEEEEEC-----CTTEEEEEECTT-SSCEEEEEETTT---------------TEEEEEEE
T ss_pred             EecCCCCcccEEEEECCCCCeEEEEEC-----CCCccceEECCC-CCEEEEEecCCC---------------ceEEEEEE
Confidence            43333 2  599999988765433221     134689999995 6 5999875421               0 124444


Q ss_pred             cCCCCeE----EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCc-eeeecCCCCCceeeeCCCCCCc-E
Q 048181          185 NPRSSQV----TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANS-FDIINFQAKPHNIKRNPGLLQT-F  258 (310)
Q Consensus       185 d~~~g~~----~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~-~~~~~l~g~Pdgl~~d~~~dG~-l  258 (310)
                      +.+ +.+    .........|.+++++|||++||++....++|+.|++.....-. .........|.++++++  ||+ +
T Consensus       159 ~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l  235 (331)
T 3u4y_A          159 DAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSR--DGSTV  235 (331)
T ss_dssp             CTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECT--TSSEE
T ss_pred             CCC-CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECC--CCCEE
Confidence            432 222    11223345689999999999999999999999999986422100 11122335689999999  998 7


Q ss_pred             EEEEec
Q 048181          259 WEAAII  264 (310)
Q Consensus       259 ~va~~~  264 (310)
                      |++...
T Consensus       236 ~v~~~~  241 (331)
T 3u4y_A          236 YVLTES  241 (331)
T ss_dssp             EEECSS
T ss_pred             EEEEcC
Confidence            888654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.43  E-value=1e-10  Score=104.45  Aligned_cols=216  Identities=8%  Similarity=0.015  Sum_probs=130.1

Q ss_pred             CcceEEEccCCCEEEE-EeCCCeEEEEECC-Cce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           35 GGESIAFEPVGGAFYT-GVADGRILKYQAP-DGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~-d~~~g~I~r~~~~-g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      .|.+++|+++|+.+|+ +..++.|..++.+ +.. .....                  ......|.++++++....||++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~l~~~  146 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV------------------VEGLDGCHSANISPDNRTLWVP  146 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE------------------ECCCTTBCCCEECTTSSEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc------------------ccCCCCceEEEECCCCCEEEEe
Confidence            7999999999985554 4457888877762 211 11110                  1223457889997434468888


Q ss_pred             e-CCCcEEEEeCCC-CeEEEeec-cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC--
Q 048181          112 D-AYSGLLVVGPNG-RLATQLAT-GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP--  186 (310)
Q Consensus       112 d-~~~gi~~id~~~-~~~~~~~~-~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~--  186 (310)
                      + ....|..++..+ ++...+.. .........|++++++|++..+|+++...                 +.+..++.  
T Consensus       147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~-----------------~~i~~~~~~~  209 (343)
T 1ri6_A          147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-----------------SSVDVWELKD  209 (343)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-----------------TEEEEEESSC
T ss_pred             cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC-----------------CEEEEEEecC
Confidence            7 344588888765 55433210 01111124678999999633488887432                 45555554  


Q ss_pred             CCCeEEEe--ec----C---CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCC
Q 048181          187 RSSQVTVL--LR----N---LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGL  254 (310)
Q Consensus       187 ~~g~~~~~--~~----~---l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~  254 (310)
                      .+++.+..  ..    .   ...|.+++|+|||++||++....+.|..|+++.. .+..+.   ....+.|.++++++  
T Consensus       210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~s~--  286 (343)
T 1ri6_A          210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-GSVLSKEGFQPTETQPRGFNVDH--  286 (343)
T ss_dssp             TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCCEEEEEEEECSSSCCCEEECT--
T ss_pred             CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC-CCceEEeeeecCCCccceEEECC--
Confidence            33443221  11    1   2345579999999999999988999999998731 233322   22234599999999  


Q ss_pred             CCc-EEEEEecCCCCCCCCceeeEEECCC-CcEEEEEecCCC
Q 048181          255 LQT-FWEAAIITRQPAGTPVPIGQRISAF-GAVLDTISFEAQ  294 (310)
Q Consensus       255 dG~-l~va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~p~~  294 (310)
                      +|+ ||++....+      .-.+.++|++ |+....-.++.+
T Consensus       287 dg~~l~~~~~~~~------~v~v~~~d~~~g~~~~~~~~~~g  322 (343)
T 1ri6_A          287 SGKYLIAAGQKSH------HISVYEIVGEQGLLHEKGRYAVG  322 (343)
T ss_dssp             TSSEEEEECTTTC------EEEEEEEETTTTEEEEEEEEECS
T ss_pred             CCCEEEEecCCCC------eEEEEEEcCCCceeeEccccccC
Confidence            997 777765432      1234555765 554444444444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.42  E-value=3.4e-10  Score=103.62  Aligned_cols=204  Identities=15%  Similarity=0.175  Sum_probs=141.3

Q ss_pred             CcceEEEccCCCEE-EEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           35 GGESIAFEPVGGAF-YTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~-~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      .+.+++|+++|+.+ +++..++.|+.++...+......                   .....+.++++++.+..||++..
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~-------------------~~~~~~~~~~~s~dg~~l~~~~~  135 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-------------------KTGKSPLGLALSPDGKKLYVTNN  135 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-------------------ECSSSEEEEEECTTSSEEEEEET
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE-------------------eCCCCcceEEECCCCCEEEEEeC
Confidence            78899999999855 45556799999998855432111                   12235789999743345777766


Q ss_pred             CC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 YS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      .. .|..+|..+++.......  +   ..++++++++++..+|++...                 ++.|+.+|..+++..
T Consensus       136 ~~~~v~~~d~~~~~~~~~~~~--~---~~~~~~~~~~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~  193 (391)
T 1l0q_A          136 GDKTVSVINTVTKAVINTVSV--G---RSPKGIAVTPDGTKVYVANFD-----------------SMSISVIDTVTNSVI  193 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEEC--C---SSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCCcEEEEEec--C---CCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCeEE
Confidence            54 488899887765433221  1   346899999964467777643                 378999998888766


Q ss_pred             EeecCCCCCceeEEccCCCEEEEEec--CCCeEEEEEecCCCCCcee-eecCCCCCceeeeCCCCCCc-EEEEEecCCCC
Q 048181          193 VLLRNLTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRGPRANSFD-IINFQAKPHNIKRNPGLLQT-FWEAAIITRQP  268 (310)
Q Consensus       193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~~~dG~-l~va~~~~~~~  268 (310)
                      .....-..+++++++|+|++||++..  ..+.|+.+++..   +... .......|..+++++  +|+ ||++....   
T Consensus       194 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~--dg~~l~~s~~~d---  265 (391)
T 1l0q_A          194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NKITARIPVGPDPAGIAVTP--DGKKVYVALSFX---  265 (391)
T ss_dssp             EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---TEEEEEEECCSSEEEEEECT--TSSEEEEEETTT---
T ss_pred             EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC---CeEEEEEecCCCccEEEEcc--CCCEEEEEcCCC---
Confidence            55555567899999999999999886  788999998763   2221 122234578899999  995 77876544   


Q ss_pred             CCCCceeeEEECC-CCcEEEEEecC
Q 048181          269 AGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       269 ~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                           ..+..+|. .|+++..+...
T Consensus       266 -----~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          266 -----NTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             -----TEEEEEETTTTEEEEEEECS
T ss_pred             -----CEEEEEECCCCcEEEEEECC
Confidence                 26777885 57777776543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.42  E-value=4.1e-12  Score=120.91  Aligned_cols=179  Identities=17%  Similarity=0.170  Sum_probs=114.6

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC---C
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA---T  105 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~---~  105 (310)
                      ...+..|.+|+++++|++|+++...++|++++++ +....+......           .......+.++||++++.   +
T Consensus        23 a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~-----------~~~~~g~~Gllgia~~Pdf~~~   91 (454)
T 1cru_A           23 LSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEI-----------VNDADGQNGLLGFAFHPDFKNN   91 (454)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-----------CCCTTSSCSEEEEEECTTTTTS
T ss_pred             ECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcc-----------ccccCCCCceeEEEECCCcCcC
Confidence            3468899999999999988888766799999875 444443311000           000012356889999844   8


Q ss_pred             CeEEEEeCC-------------CcEEEEeCCC--Ce---EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccC---
Q 048181          106 RQLYIADAY-------------SGLLVVGPNG--RL---ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYD---  164 (310)
Q Consensus       106 g~LyVad~~-------------~gi~~id~~~--~~---~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~---  164 (310)
                      +.|||+...             ..|++++.+.  +.   .+++..........++++|++++ +|.|||+.......   
T Consensus        92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~  170 (454)
T 1cru_A           92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLA  170 (454)
T ss_dssp             CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGG
T ss_pred             CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcc
Confidence            999998742             3588876542  22   23344333322345789999999 59999985432110   


Q ss_pred             ----ccc--ee------EeeeecCCCceEEEEcCCCC-----------eEEEeecCCCCCceeEEccCCCEEEEEecCCC
Q 048181          165 ----FRT--IV------KLNITNDSTGRLLSYNPRSS-----------QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN  221 (310)
Q Consensus       165 ----~~~--~~------~~~~~~~~~G~l~~~d~~~g-----------~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~  221 (310)
                          ..+  ..      ..--.....|+|+|++++..           ..+++..++..|.||+|+++|+ ||++|....
T Consensus       171 ~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g~~  249 (454)
T 1cru_A          171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGPN  249 (454)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECSS
T ss_pred             ccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecCCC
Confidence                000  00      00000123689999999744           3466778899999999999875 999997543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.40  E-value=2.3e-10  Score=104.06  Aligned_cols=193  Identities=11%  Similarity=0.140  Sum_probs=119.5

Q ss_pred             CCCCcceEEEccCCCEEEEEeC----CCeE--EEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           32 KAFGGESIAFEPVGGAFYTGVA----DGRI--LKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~----~g~I--~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      ....|.+++++++|+.+|+...    +++|  ++++.+ +..+.+...                 ......|..+++  .
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-----------------~~~~~~p~~~~~--d  108 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-----------------KTMGADPCYLTT--N  108 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-----------------ECSSSCEEEEEE--C
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-----------------ccCCCCcEEEEE--C
Confidence            3467999999999986666554    3676  456665 433333210                 112347888988  4


Q ss_pred             CCeEEEEeCCCc-EEEEeCCC-CeEEEee----ccCCC-----ccccCccceEEeCCCCe-EEEEcCCCccCccceeEee
Q 048181          105 TRQLYIADAYSG-LLVVGPNG-RLATQLA----TGAEG-----QAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus       105 ~g~LyVad~~~g-i~~id~~~-~~~~~~~----~~~~g-----~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~  172 (310)
                      +..||+++...+ +..++.+. +.+..+.    ....+     +....+++++++|+ |+ +|+++....          
T Consensus       109 g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~----------  177 (361)
T 3scy_A          109 GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD-GKYLLADDLGTD----------  177 (361)
T ss_dssp             SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT-SSEEEEEETTTT----------
T ss_pred             CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC-CCEEEEEeCCCC----------
Confidence            677999986554 66666542 2221111    01001     12335688999995 75 999886431          


Q ss_pred             eecCCCceEEEEcCCCC----e-E-------EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--
Q 048181          173 ITNDSTGRLLSYNPRSS----Q-V-------TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--  238 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g----~-~-------~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--  238 (310)
                           .=.+|.++..++    + +       .........|++++|+|||++||++....++|..|+++.   +..+.  
T Consensus       178 -----~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~---g~~~~~~  249 (361)
T 3scy_A          178 -----QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD---GMLDEIQ  249 (361)
T ss_dssp             -----EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET---TEEEEEE
T ss_pred             -----EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC---CceEEeE
Confidence                 013444555443    2 2       122233457899999999999999998899999999873   33322  


Q ss_pred             --ecCC---CCCceeeeCCCCCCc-EEEEEec
Q 048181          239 --INFQ---AKPHNIKRNPGLLQT-FWEAAII  264 (310)
Q Consensus       239 --~~l~---g~Pdgl~~d~~~dG~-l~va~~~  264 (310)
                        ...+   ..|.++++++  ||+ ||++...
T Consensus       250 ~~~~~~~~~~~~~~i~~sp--dg~~l~v~~~~  279 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSP--DGKYLYASNRL  279 (361)
T ss_dssp             EEESCSSCCCCEEEEEECT--TSSEEEEEECS
T ss_pred             EEecCCCCCCCcccEEECC--CCCEEEEECCC
Confidence              1121   2467999999  996 7787765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.39  E-value=9.2e-11  Score=104.98  Aligned_cols=204  Identities=11%  Similarity=0.063  Sum_probs=133.6

Q ss_pred             CCcce-EEEccCCCEEEEEeCC-C--eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eE
Q 048181           34 FGGES-IAFEPVGGAFYTGVAD-G--RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QL  108 (310)
Q Consensus        34 ~~Peg-ia~d~~G~l~~~d~~~-g--~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~L  108 (310)
                      ..|.. ++++++|+.+|+.... +  .|..++.+.+...-..                   .....|.+++++ ++| .|
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~-------------------~~~~~~~~~~~s-pdg~~l  142 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI-------------------PIPYDAVGIAIS-PNGNGL  142 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE-------------------ECCTTEEEEEEC-TTSSCE
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE-------------------ECCCCccceEEC-CCCCEE
Confidence            36778 9999999977765544 3  8999998754321110                   123468899998 566 59


Q ss_pred             EEEeCC-Cc-EEEEeCCC-CeEEEe-eccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          109 YIADAY-SG-LLVVGPNG-RLATQL-ATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       109 yVad~~-~g-i~~id~~~-~~~~~~-~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      |+++.. .. |..++.+. +..... .....  ....|.+++++|+ |+ +|+++..                 ++.+..
T Consensus       143 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~spd-g~~l~v~~~~-----------------~~~v~v  202 (331)
T 3u4y_A          143 ILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTPD-GNFAFVANLI-----------------GNSIGI  202 (331)
T ss_dssp             EEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECTT-SSEEEEEETT-----------------TTEEEE
T ss_pred             EEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECCC-CCEEEEEeCC-----------------CCeEEE
Confidence            998764 45 55544332 222111 11111  1234789999995 75 8998754                 367888


Q ss_pred             EcCCCCeE---EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-----ecC---C---CCCceee
Q 048181          184 YNPRSSQV---TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-----INF---Q---AKPHNIK  249 (310)
Q Consensus       184 ~d~~~g~~---~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-----~~l---~---g~Pdgl~  249 (310)
                      +|..+++.   ......-..|.+++++|||++||++....+.|+.+++..   +..+.     ..+   +   ....+++
T Consensus       203 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (331)
T 3u4y_A          203 LETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS---GTLSFVKSFGHGLLIDPRPLFGANQMA  279 (331)
T ss_dssp             EECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT---TEEEEEEEEECCCCCCCGGGTTCCCEE
T ss_pred             EECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC---CceeeecccccccccCCCCcccccceE
Confidence            88877764   333344468999999999999999988888899998764   33211     111   1   1235589


Q ss_pred             eCCCCCCc-EEEEEecCCCCCCCCceeeEEECCCCcEEEEEe
Q 048181          250 RNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAFGAVLDTIS  290 (310)
Q Consensus       250 ~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~  290 (310)
                      +++  ||. ||++....+        .+..++-+++.+..+.
T Consensus       280 ~sp--dg~~l~v~~~~~~--------~v~v~d~~~~~~~~~~  311 (331)
T 3u4y_A          280 LNK--TETKLFISANISR--------ELKVFTISGKVVGYVA  311 (331)
T ss_dssp             ECT--TSSEEEEEETTTT--------EEEEEETTSCEEEECT
T ss_pred             ECC--CCCEEEEecCCCC--------cEEEEEecCCccccee
Confidence            999  996 788876653        6778887777666553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=6.2e-11  Score=107.39  Aligned_cols=183  Identities=13%  Similarity=0.117  Sum_probs=123.0

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      .|.+++++++|++|++.  ...|++++++++ .+.+....               ......+++.+++| ++|++|+++.
T Consensus        91 ~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~---------------~~~~~~~~~~i~~d-~~G~l~v~~~  152 (326)
T 2ghs_A           91 MGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAELE---------------SDLPGNRSNDGRMH-PSGALWIGTM  152 (326)
T ss_dssp             CEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSS---------------TTCTTEEEEEEEEC-TTSCEEEEEE
T ss_pred             cceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeCC---------------CCCCCCCCCCEEEC-CCCCEEEEeC
Confidence            68899999999976665  456999998644 43332100               00123468899998 7899999864


Q ss_pred             C-------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          114 Y-------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       114 ~-------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      .       .+|++++ + ++.+.+..     .+..+|++++++++..+|+++...                 ++|+++|.
T Consensus       153 ~~~~~~~~~~l~~~~-~-g~~~~~~~-----~~~~~~~i~~s~dg~~lyv~~~~~-----------------~~I~~~d~  208 (326)
T 2ghs_A          153 GRKAETGAGSIYHVA-K-GKVTKLFA-----DISIPNSICFSPDGTTGYFVDTKV-----------------NRLMRVPL  208 (326)
T ss_dssp             ETTCCTTCEEEEEEE-T-TEEEEEEE-----EESSEEEEEECTTSCEEEEEETTT-----------------CEEEEEEB
T ss_pred             CCcCCCCceEEEEEe-C-CcEEEeeC-----CCcccCCeEEcCCCCEEEEEECCC-----------------CEEEEEEc
Confidence            2       3599999 4 56554432     245689999999533699998642                 56888875


Q ss_pred             C--CC-eE---EEee---cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCC-CCceeeeC-CCCC
Q 048181          187 R--SS-QV---TVLL---RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQA-KPHNIKRN-PGLL  255 (310)
Q Consensus       187 ~--~g-~~---~~~~---~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g-~Pdgl~~d-~~~d  255 (310)
                      +  ++ ++   +.+.   .....|+|++++++|+ ||++....++|++|+.++.   ......++. .|.+++++ +  +
T Consensus       209 ~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~---~~~~i~~~~~~~~~~af~g~--d  282 (326)
T 2ghs_A          209 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN---HIARYEVPGKQTTCPAFIGP--D  282 (326)
T ss_dssp             CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC---EEEEEECSCSBEEEEEEEST--T
T ss_pred             ccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCC---EEEEEECCCCCcEEEEEecC--C
Confidence            4  45 32   2221   1234689999999996 9999988899999987432   112123332 48889997 5  6


Q ss_pred             C-cEEEEEecC
Q 048181          256 Q-TFWEAAIIT  265 (310)
Q Consensus       256 G-~l~va~~~~  265 (310)
                      + .||++....
T Consensus       283 ~~~L~vt~~~~  293 (326)
T 2ghs_A          283 ASRLLVTSARE  293 (326)
T ss_dssp             SCEEEEEEBCT
T ss_pred             CCEEEEEecCC
Confidence            5 699987664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.39  E-value=1.4e-10  Score=103.98  Aligned_cols=238  Identities=13%  Similarity=0.075  Sum_probs=135.9

Q ss_pred             eEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           24 FTKILFPPKAFGGESIAFEPVGG-AFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      +++++++. ...|.+++++++|+ +|++...+++|+.++.+++.........       ...     ......|.+++++
T Consensus        34 ~~~~~~~~-~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~-------~~~-----~~~~~~~~~~~~s  100 (349)
T 1jmx_B           34 YKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS-------SVP-----GEVGRSMYSFAIS  100 (349)
T ss_dssp             EEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC-------CST-----TEEEECSSCEEEC
T ss_pred             EEEEecCC-CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc-------ccc-----ccccccccceEEC
Confidence            34455553 23699999999997 4555667899999998754322111000       000     0002247789997


Q ss_pred             cCCCeEEEEeCC------------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCC-ccCccce-
Q 048181          103 YATRQLYIADAY------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASG-VYDFRTI-  168 (310)
Q Consensus       103 ~~~g~LyVad~~------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~-~~~~~~~-  168 (310)
                      +....||++...            ..|..+|.++++..........  -..+.+++++++ |++|+++..- .++.... 
T Consensus       101 pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~d-g~l~~~~~~i~~~d~~~~~  177 (349)
T 1jmx_B          101 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADD-GSLYVAGPDIYKMDVKTGK  177 (349)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTT-SCEEEESSSEEEECTTTCC
T ss_pred             CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC--CCcccceeECCC-CcEEEccCcEEEEeCCCCc
Confidence            444467877632            4588899876432111111111  124678889994 8888864320 0011000 


Q ss_pred             eEeeeecCC---------------------------------------------CceEEEEcCCCCeEEEee--cCCCCC
Q 048181          169 VKLNITNDS---------------------------------------------TGRLLSYNPRSSQVTVLL--RNLTGP  201 (310)
Q Consensus       169 ~~~~~~~~~---------------------------------------------~G~l~~~d~~~g~~~~~~--~~l~~p  201 (310)
                      ....+....                                             ...++.+|..+++++.+.  ..-..+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (349)
T 1jmx_B          178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY  257 (349)
T ss_dssp             EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence            000000000                                             001122444444443322  122367


Q ss_pred             ceeEEcc-CCCEEEEEecCCCeEEEEEecCCCCCcee-eecCCCCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEE
Q 048181          202 AGVAISV-DSSFLLVSEFTGNRTLKYWLRGPRANSFD-IINFQAKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQR  278 (310)
Q Consensus       202 nGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~  278 (310)
                      .+++++| ||++||++   .++|++|++..   ++.. .......|.++++++  +|+ ||++...         ..+..
T Consensus       258 ~~~~~sp~dg~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~---------~~v~v  320 (349)
T 1jmx_B          258 FTGLRSPKDPNQIYGV---LNRLAKYDLKQ---RKLIKAANLDHTYYCVAFDK--KGDKLYLGGTF---------NDLAV  320 (349)
T ss_dssp             EEEEECSSCTTEEEEE---ESEEEEEETTT---TEEEEEEECSSCCCEEEECS--SSSCEEEESBS---------SEEEE
T ss_pred             eeeEecCCCCCEEEEE---cCeEEEEECcc---CeEEEEEcCCCCccceEECC--CCCEEEEecCC---------CeEEE
Confidence            8999999 99999998   67999998753   3321 123344689999999  985 7775333         26888


Q ss_pred             ECC-CCcEEEEEecCCC
Q 048181          279 ISA-FGAVLDTISFEAQ  294 (310)
Q Consensus       279 ~~~-~G~~~~~~~~p~~  294 (310)
                      +|. .++++..+..|.+
T Consensus       321 ~d~~~~~~~~~~~~~~~  337 (349)
T 1jmx_B          321 FNPDTLEKVKNIKLPGG  337 (349)
T ss_dssp             EETTTTEEEEEEECSSS
T ss_pred             EeccccceeeeeecCCC
Confidence            896 5899999999844

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.38  E-value=8.7e-10  Score=100.90  Aligned_cols=184  Identities=16%  Similarity=0.166  Sum_probs=130.2

Q ss_pred             CCcceEEEccCCCEE-EEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVGGAF-YTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~-~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ..|.+++++++|+.+ +++..++.|+.++...+......                   .....+.++++++.+..||++.
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-------------------~~~~~v~~~~~spdg~~l~~~~   92 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-------------------PAGSSPQGVAVSPDGKQVYVTN   92 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-------------------ECSSSEEEEEECTTSSEEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-------------------ECCCCccceEECCCCCEEEEEE
Confidence            358999999999854 56668899999998754322110                   1123688999974444588887


Q ss_pred             CC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      .. ..|..+|.++++.......     -..++++++++++..+|++...                 ++.|+.+|..+++.
T Consensus        93 ~~~~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           93 MASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAV  150 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCCeEEEEEeC-----CCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcE
Confidence            65 4599999988765433221     1246899999953357787643                 37899999888877


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-eecCCCCCceeeeCCCCCCc-EEEEEe
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-IINFQAKPHNIKRNPGLLQT-FWEAAI  263 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~~~dG~-l~va~~  263 (310)
                      ......-..|++++++|||+.||++....+.|+.+++..   +... .......+.++++++  +|+ ||++..
T Consensus       151 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~--~g~~l~~~~~  219 (391)
T 1l0q_A          151 INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---NSVIDTVKVEAAPSGIAVNP--EGTKAYVTNV  219 (391)
T ss_dssp             EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECSSEEEEEEECT--TSSEEEEEEE
T ss_pred             EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CeEEEEEecCCCccceEECC--CCCEEEEEec
Confidence            665555567899999999999999999999999999864   2221 122344578899999  885 676664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.38  E-value=4.8e-10  Score=100.07  Aligned_cols=191  Identities=12%  Similarity=0.163  Sum_probs=118.6

Q ss_pred             CCcceEEEccCCCEEEEEeC-CCeEEEEECC--C-ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           34 FGGESIAFEPVGGAFYTGVA-DGRILKYQAP--D-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~-~g~I~r~~~~--g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ..|.+++|+++|+.+|+... +++|..++.+  + ....+...                  .....|.++++++....||
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~l~   99 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------------------ALPGSLTHISTDHQGQFVF   99 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------------------ECSSCCSEEEECTTSSEEE
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc------------------ccCCCCcEEEEcCCCCEEE
Confidence            46899999999985555544 4888876644  3 33322210                  1123688999974334588


Q ss_pred             EEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Vad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++....+ |..++.+.+...........  ...++++++++++..+|+++..                 +++|+.+|..+
T Consensus       100 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~  160 (343)
T 1ri6_A          100 VGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSD  160 (343)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECT
T ss_pred             EEecCCCeEEEEECCCCccccccccccC--CCCceEEEECCCCCEEEEecCC-----------------CCEEEEEEecC
Confidence            8876544 77776633322222222222  2358899999963368887633                 25677776654


Q ss_pred             -CeEEEe------ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee----ecCC------CCCceeeeC
Q 048181          189 -SQVTVL------LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI----INFQ------AKPHNIKRN  251 (310)
Q Consensus       189 -g~~~~~------~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~----~~l~------g~Pdgl~~d  251 (310)
                       +++...      ...-..|++++++|||++||++....++|..|+++.. .+..+.    ..++      ..|.+++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  239 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP-HGNIECVQTLDMMPENFSDTRWAADIHIT  239 (343)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT-TSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEeeccccCccccccCCccceEEC
Confidence             554321      1223478899999999999999988999999998642 233221    2222      135579999


Q ss_pred             CCCCCc-EEEEEec
Q 048181          252 PGLLQT-FWEAAII  264 (310)
Q Consensus       252 ~~~dG~-l~va~~~  264 (310)
                      +  +|+ ||++...
T Consensus       240 ~--dg~~l~v~~~~  251 (343)
T 1ri6_A          240 P--DGRHLYACDRT  251 (343)
T ss_dssp             T--TSSEEEEEETT
T ss_pred             C--CCCEEEEEecC
Confidence            9  995 6777643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.35  E-value=2.6e-11  Score=109.56  Aligned_cols=174  Identities=14%  Similarity=0.125  Sum_probs=115.5

Q ss_pred             CCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEe-eccCC--CccccCccceEE---eCCCCeEEE-EcCCCcc
Q 048181           92 ICRRTFGLALHYATRQLYIADAYS-GLLVVGPNGRLATQL-ATGAE--GQAFHFLDGLDV---DQGTGVVYF-TDASGVY  163 (310)
Q Consensus        92 ~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~~~~~~~-~~~~~--g~~~~~pndvav---d~~~G~lyv-td~~~~~  163 (310)
                      ....|-+.++|+.++++|+++... .|.+++++++..+.+ .....  +.+...+.||.+   |++ |+||+ +|....|
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af   89 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSF   89 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccc
Confidence            345788999997789999999765 499999986654444 11111  445556789999   795 99998 5543222


Q ss_pred             CccceeEeeeecCCCceEEEEcCC---CCeEEEeec--------------CCCCCceeEEccCCCEEEEEecCC-CeEEE
Q 048181          164 DFRTIVKLNITNDSTGRLLSYNPR---SSQVTVLLR--------------NLTGPAGVAISVDSSFLLVSEFTG-NRTLK  225 (310)
Q Consensus       164 ~~~~~~~~~~~~~~~G~l~~~d~~---~g~~~~~~~--------------~l~~pnGIa~~~dg~~Lyv~d~~~-~~I~~  225 (310)
                      .....     ...+...|++||..   +++.....+              ....+|+|+++++|+ .||+++.. +.|+|
T Consensus        90 ~~~g~-----~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~r  163 (334)
T 2p9w_A           90 NFADQ-----SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIAR  163 (334)
T ss_dssp             CTTSC-----CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEE
T ss_pred             ccccc-----ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEE
Confidence            21100     11235679999987   565433221              223589999999998 89999999 99999


Q ss_pred             EEecCCCCCceeeec--C--CCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181          226 YWLRGPRANSFDIIN--F--QAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       226 ~~~~~~~~g~~~~~~--l--~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                      ++.+|.......+..  .  ...+.||++.+  +|+++++....+        ++.+||.+
T Consensus       164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g--------~L~~fD~~  214 (334)
T 2p9w_A          164 VSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPR--------ALTAFDVS  214 (334)
T ss_dssp             ECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSS--------SEEEEECS
T ss_pred             EeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCC--------eEEEEcCC
Confidence            999875221111111  0  12488999999  997665554442        57777754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=1.4e-09  Score=96.41  Aligned_cols=192  Identities=10%  Similarity=0.031  Sum_probs=132.8

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN  123 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~  123 (310)
                      .|++++++..+++|+.++++.+...+....                 .....++.+++. ++|++|++ ...+|+.+|++
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-----------------~~~~~~~~~~~~-pdG~ilvs-~~~~V~~~d~~   64 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-----------------EKGWECNSVAAT-KAGEILFS-YSKGAKMITRD   64 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC-----------------CTTCCCCEEEEC-TTSCEEEE-CBSEEEEECTT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-----------------CccCCCcCeEEC-CCCCEEEe-CCCCEEEECCC
Confidence            367788888999999999954444443211                 111357788886 78999985 45579999995


Q ss_pred             CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE-Eee------c
Q 048181          124 GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT-VLL------R  196 (310)
Q Consensus       124 ~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~-~~~------~  196 (310)
                      +..+..+.. ..+   ...+.+.+.+ +|++++++...                +++++.+|++ |+.. .+.      .
T Consensus        65 G~~~W~~~~-~~~---~~~~~~~~~~-dG~~lv~~~~~----------------~~~v~~vd~~-Gk~l~~~~~~~~~~~  122 (276)
T 3no2_A           65 GRELWNIAA-PAG---CEMQTARILP-DGNALVAWCGH----------------PSTILEVNMK-GEVLSKTEFETGIER  122 (276)
T ss_dssp             SCEEEEEEC-CTT---CEEEEEEECT-TSCEEEEEEST----------------TEEEEEECTT-SCEEEEEEECCSCSS
T ss_pred             CCEEEEEcC-CCC---ccccccEECC-CCCEEEEecCC----------------CCEEEEEeCC-CCEEEEEeccCCCCc
Confidence            544444322 111   1346778888 59999998641                2567777764 4322 111      1


Q ss_pred             CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCcee
Q 048181          197 NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPI  275 (310)
Q Consensus       197 ~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~  275 (310)
                      ....|.+++++++|+ +++++..+++|..|+.+|.    ..- ...++.|.+..+.+  +|+++++....        .+
T Consensus       123 ~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~G~----~~w~~~~~~~~~~~~~~~--~g~~~v~~~~~--------~~  187 (276)
T 3no2_A          123 PHAQFRQINKNKKGN-YLVPLFATSEVREIAPNGQ----LLNSVKLSGTPFSSAFLD--NGDCLVACGDA--------HC  187 (276)
T ss_dssp             GGGSCSCCEECTTSC-EEEEETTTTEEEEECTTSC----EEEEEECSSCCCEEEECT--TSCEEEECBTT--------SE
T ss_pred             ccccccCceECCCCC-EEEEecCCCEEEEECCCCC----EEEEEECCCCccceeEcC--CCCEEEEeCCC--------Ce
Confidence            223578999999998 6788999999999987642    211 33345688999999  99999998765        37


Q ss_pred             eEEECCC-CcEEEEEec
Q 048181          276 GQRISAF-GAVLDTISF  291 (310)
Q Consensus       276 v~~~~~~-G~~~~~~~~  291 (310)
                      ++.+|++ |+++-.+..
T Consensus       188 v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          188 FVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             EEEECTTTCCEEEEEEG
T ss_pred             EEEEeCcCCcEEEEecC
Confidence            9999998 999999874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.33  E-value=1.3e-10  Score=109.42  Aligned_cols=235  Identities=11%  Similarity=0.021  Sum_probs=138.1

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEe----------CCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCC
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGV----------ADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGP   91 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~----------~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~   91 (310)
                      +.+|+..   ..| ++++++||+.+|+..          .++.|..||......  .+...+..            . ..
T Consensus       112 v~~I~vG---~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~------------r-~~  174 (426)
T 3c75_H          112 LGMTDGG---FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP------------R-FL  174 (426)
T ss_dssp             EEEEEEC---SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------------C-CC
T ss_pred             EEEEECC---CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc------------c-cc
Confidence            4445555   368 999999997666654          356799998875322  22211000            0 01


Q ss_pred             CCCceeeEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEeeccCCCccccCccc----eEEeCCCCeEEEEcCCCc---
Q 048181           92 ICRRTFGLALHYATRQLYIADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDG----LDVDQGTGVVYFTDASGV---  162 (310)
Q Consensus        92 ~~~~P~Gla~d~~~g~LyVad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pnd----vavd~~~G~lyvtd~~~~---  162 (310)
                      ....|.+++++++.++|||++..  +.|.+||.+++++..-... .+.....|.+    +++.++ |++++-+....   
T Consensus       175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-~g~~~~~p~g~~~~v~~~~d-G~~~~V~~~~~~v~  252 (426)
T 3c75_H          175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-PDCYHIFPASPTVFYMNCRD-GSLARVDFADGETK  252 (426)
T ss_dssp             BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-CSEEEEEEEETTEEEEEETT-SSEEEEECCTTCCE
T ss_pred             cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-CCceeeccCCCcEEEEEcCC-CCEEEEECCCCcEE
Confidence            23579999998556689999853  4599999998765322221 1212233444    778874 66554443211   


Q ss_pred             ------cCccc---ee--------EeeeecCCCceEEEEcCCCCeEEEeec----------CCCCCce---eEEccCCCE
Q 048181          163 ------YDFRT---IV--------KLNITNDSTGRLLSYNPRSSQVTVLLR----------NLTGPAG---VAISVDSSF  212 (310)
Q Consensus       163 ------~~~~~---~~--------~~~~~~~~~G~l~~~d~~~g~~~~~~~----------~l~~pnG---Ia~~~dg~~  212 (310)
                            +....   +.        ..++.....|+++.+|..++.++....          .-..|.|   +++++||++
T Consensus       253 ~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r  332 (426)
T 3c75_H          253 VTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDR  332 (426)
T ss_dssp             EEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTE
T ss_pred             EEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCE
Confidence                  00000   00        000111224677788765444433211          0013555   999999999


Q ss_pred             EEEEecC---------CCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCc--EEEEEecCCCCCCCCceeeEEECC
Q 048181          213 LLVSEFT---------GNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQT--FWEAAIITRQPAGTPVPIGQRISA  281 (310)
Q Consensus       213 Lyv~d~~---------~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~--l~va~~~~~~~~~~~~~~v~~~~~  281 (310)
                      |||+...         .+.|+++|....+  ......++..|++|++++  ||+  +|++.+..+        .|..+|.
T Consensus       333 lyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~vg~~P~gia~sp--Dg~~~lyv~n~~s~--------~VsVID~  400 (426)
T 3c75_H          333 IYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIELGHEIDSINVSQ--DAEPLLYALSAGTQ--------TLHIYDA  400 (426)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEEEEECEEEECC--SSSCEEEEEETTTT--------EEEEEET
T ss_pred             EEEEecccccccccCCCCEEEEEECCCCe--EEEEEECCCCcCeEEEcc--CCCEEEEEEcCCCC--------eEEEEEC
Confidence            9999752         3579999975321  111122334699999999  997  556555443        7889995


Q ss_pred             -CCcEEEEE
Q 048181          282 -FGAVLDTI  289 (310)
Q Consensus       282 -~G~~~~~~  289 (310)
                       .++++..+
T Consensus       401 ~t~kvv~tI  409 (426)
T 3c75_H          401 ATGEELRSV  409 (426)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCCEEEEe
Confidence             69999888

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.31  E-value=5.8e-10  Score=102.19  Aligned_cols=213  Identities=13%  Similarity=0.071  Sum_probs=123.4

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCeEEEEEC--CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe---
Q 048181           33 AFGGESIAFEPVGGAFYTGVADGRILKYQA--PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ---  107 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~---  107 (310)
                      ...|.+++++++|+.+|+.... .|..++.  +++.......                  ...+.|..++++ ++|+   
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------~~~g~~~~~~~s-pdg~~l~   98 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------PIGGHPRANDAD-TNTRAIF   98 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE------------------ECCSSGGGGCTT-SCCEEEE
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe------------------ecCCCCccEEEC-CCCCEEE
Confidence            4579999999999866666544 7777664  3433221100                  011246678886 6776   


Q ss_pred             EEEEe-------------CCCcEEEEeCC-CCeEEEeeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEee
Q 048181          108 LYIAD-------------AYSGLLVVGPN-GRLATQLATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus       108 LyVad-------------~~~gi~~id~~-~~~~~~~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~~  172 (310)
                      +|+++             ....+..++.+ .++..........+....|++++++|+ | .+|++|...           
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd-G~~l~~~~~~~-----------  166 (365)
T 1jof_A           99 LLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT-ETYLYSADLTA-----------  166 (365)
T ss_dssp             EEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTT-----------
T ss_pred             EEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC-CCEEEEEcCCC-----------
Confidence            33443             22224444433 233322111111012346899999995 6 588887532           


Q ss_pred             eecCCCceEEEEcCC-CCeEEEee--c---CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-----eecC
Q 048181          173 ITNDSTGRLLSYNPR-SSQVTVLL--R---NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-----IINF  241 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~-~g~~~~~~--~---~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-----~~~l  241 (310)
                            ++|+.++.+ +++++.+.  .   ....|.+++|+|||++||++....++|..|+++.. .|...     +..+
T Consensus       167 ------~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~  239 (365)
T 1jof_A          167 ------NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLI  239 (365)
T ss_dssp             ------TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESS
T ss_pred             ------CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcC
Confidence                  456666655 56654321  1   13569999999999999999888889888877631 23321     1222


Q ss_pred             C----C---------CCceee-eCCCCCCc-EEEEEecCCCCCCCCceeeEEECCCCcEEE
Q 048181          242 Q----A---------KPHNIK-RNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAFGAVLD  287 (310)
Q Consensus       242 ~----g---------~Pdgl~-~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~G~~~~  287 (310)
                      +    +         .|.+++ +++  ||+ ||++....... .+..-.+..++++|++..
T Consensus       240 ~~~~~g~~~~~~~~~~~~~i~~~sp--dG~~l~v~~~~~~~~-~~~~i~v~~~~~~g~~~~  297 (365)
T 1jof_A          240 PPGIPDRDPETGKGLYRADVCALTF--SGKYMFASSRANKFE-LQGYIAGFKLRDCGSIEK  297 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECT--TSSEEEEEEEESSTT-SCCEEEEEEECTTSCEEE
T ss_pred             CCCcCCcccccccccccccEEEECC--CCCEEEEECCCCCCC-CCCeEEEEEECCCCCEEE
Confidence            2    1         377899 999  995 78887654200 000123455556787654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.30  E-value=1.6e-10  Score=105.78  Aligned_cols=156  Identities=15%  Similarity=0.144  Sum_probs=106.7

Q ss_pred             CCCCceeeEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEEeecc--CCCccccCccceEEeCC---CCeEEEEcCCCccC
Q 048181           91 PICRRTFGLALHYATRQLYIADA-YSGLLVVGPNGRLATQLATG--AEGQAFHFLDGLDVDQG---TGVVYFTDASGVYD  164 (310)
Q Consensus        91 ~~~~~P~Gla~d~~~g~LyVad~-~~gi~~id~~~~~~~~~~~~--~~g~~~~~pndvavd~~---~G~lyvtd~~~~~~  164 (310)
                      ..+..|.+|++. ++|+|||++. ...|++++.++++.+.+...  ........++||+++|+   +|.||++.+..   
T Consensus        29 ~gL~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~---  104 (347)
T 3das_A           29 TGLNSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA---  104 (347)
T ss_dssp             CCCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS---
T ss_pred             cCCCCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC---
Confidence            356789999997 7899999998 44599999876665544321  11223457899999983   59999975421   


Q ss_pred             ccceeEeeeecCCCceEEEEcCCCC--------eEEEeec-----CCCCCceeEEccCCCEEEEEe-------------c
Q 048181          165 FRTIVKLNITNDSTGRLLSYNPRSS--------QVTVLLR-----NLTGPAGVAISVDSSFLLVSE-------------F  218 (310)
Q Consensus       165 ~~~~~~~~~~~~~~G~l~~~d~~~g--------~~~~~~~-----~l~~pnGIa~~~dg~~Lyv~d-------------~  218 (310)
                                  ...+|+|+..+.+        +.+++..     ...+++.|+|+|||+ |||+.             .
T Consensus       105 ------------~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~  171 (347)
T 3das_A          105 ------------SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKS  171 (347)
T ss_dssp             ------------SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTC
T ss_pred             ------------CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCC
Confidence                        1246777754321        2333332     334677899999996 99984             2


Q ss_pred             CCCeEEEEEecCCCC-C----ceee--ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          219 TGNRTLKYWLRGPRA-N----SFDI--INFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       219 ~~~~I~~~~~~~~~~-g----~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      ..++|+|++.+|.-. .    ..++  .++- -|.||++|+  +|.||+++++.+
T Consensus       172 ~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp--~G~L~~~d~g~~  223 (347)
T 3das_A          172 LGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDD--KQRLFASEFGQD  223 (347)
T ss_dssp             STTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECT--TCCEEEEECCSS
T ss_pred             CCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECC--CCCEEEEecCCC
Confidence            468999999886410 0    1233  3333 499999999  999999998764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.30  E-value=1.8e-09  Score=98.19  Aligned_cols=216  Identities=13%  Similarity=0.082  Sum_probs=127.5

Q ss_pred             CCcceEEEccCCC-EEEEEeCCCeEEEEECC--CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EE
Q 048181           34 FGGESIAFEPVGG-AFYTGVADGRILKYQAP--DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LY  109 (310)
Q Consensus        34 ~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~--g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-Ly  109 (310)
                      ..|.++++  +|+ +|+++..++.|..++.+  +....+...      ....|............|++++++ ++|+ ||
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~s-pdg~~l~  170 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV------IEFKGSGPDKERQTMPHLHCVRIT-PDGKYLL  170 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE------EECCCCCSCTTTCSSCCEEEEEEC-TTSSEEE
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee------EEccCCCCCccccCCCcceEEEEC-CCCCEEE
Confidence            47889998  566 44445567888877754  222111000      000111000011224467899998 5665 99


Q ss_pred             EEeCCCc-EEEE--eCCCC----e-EEE-----eeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEeeeec
Q 048181          110 IADAYSG-LLVV--GPNGR----L-ATQ-----LATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus       110 Vad~~~g-i~~i--d~~~~----~-~~~-----~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      +++...+ |..+  +..++    + +..     ....   .....|+.++++|+ | .+|+++...              
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~spd-g~~l~v~~~~~--------------  232 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV---APGSGPRHLIFNSD-GKFAYLINEIG--------------  232 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC---CTTCCEEEEEECTT-SSEEEEEETTT--------------
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceec---CCCCCCeEEEEcCC-CCEEEEEcCCC--------------
Confidence            9887543 5444  54443    2 211     1111   12345789999995 6 588887432              


Q ss_pred             CCCceEEEEcCCCCeEEEee------cCCCCCceeEEccCCCEEEEEecC-CCeEEEEEecCCCCCceee-ecC--CCCC
Q 048181          176 DSTGRLLSYNPRSSQVTVLL------RNLTGPAGVAISVDSSFLLVSEFT-GNRTLKYWLRGPRANSFDI-INF--QAKP  245 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~------~~l~~pnGIa~~~dg~~Lyv~d~~-~~~I~~~~~~~~~~g~~~~-~~l--~g~P  245 (310)
                         +.|..++.++++++.+.      .....|.+|+|+|||++||++... .++|..|+++.. .+..+. ..+  ...|
T Consensus       233 ---~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~~~~~~~~~~g~~~  308 (361)
T 3scy_A          233 ---GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-NGTLTKVGYQLTGIHP  308 (361)
T ss_dssp             ---CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-TCCEEEEEEEECSSCC
T ss_pred             ---CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCcEEEeeEecCCCCC
Confidence               45666665556554332      123457799999999999999988 889999988632 234332 222  3469


Q ss_pred             ceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECC-CCcEEEE
Q 048181          246 HNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISA-FGAVLDT  288 (310)
Q Consensus       246 dgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~  288 (310)
                      .++++++  ||+ ||++.....      .-.+.++|+ .|++...
T Consensus       309 ~~~~~sp--dg~~l~~~~~~~~------~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          309 RNFIITP--NGKYLLVACRDTN------VIQIFERDQATGLLTDI  345 (361)
T ss_dssp             CEEEECT--TSCEEEEEETTTT------EEEEEEECTTTCCEEEC
T ss_pred             ceEEECC--CCCEEEEEECCCC------CEEEEEEECCCCcEeec
Confidence            9999999  997 788875542      124555786 5776543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.28  E-value=2e-09  Score=99.80  Aligned_cols=219  Identities=12%  Similarity=0.100  Sum_probs=143.0

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ...++++.++|.+|+++..++.|..++.+.+......                  ......+.++++++.+..+|++...
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~  232 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV------------------DLTGKWSKILLYDPIRDLVYCSNWI  232 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE------------------ECSSSSEEEEEEETTTTEEEEEETT
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE------------------cCCCCCeeEEEEcCCCCEEEEEecC
Confidence            4567899999998888888999999997753221110                  0123467899998545567788754


Q ss_pred             -CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          115 -SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       115 -~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                       ..|..+|.++++.......     ...+.++++++++..+|++......          ....+|.|+.+|..+++...
T Consensus       233 ~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~----------~~~~dg~i~~~d~~~~~~~~  297 (433)
T 3bws_A          233 SEDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASN----------QESGGGRLGIYSMDKEKLID  297 (433)
T ss_dssp             TTEEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCT----------TCSCCEEEEEEETTTTEEEE
T ss_pred             CCcEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCc----------cccCCCeEEEEECCCCcEEe
Confidence             3488999887765332211     1237899999963367776532210          00136789999988777655


Q ss_pred             eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEEEecCCCCC--
Q 048181          194 LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEAAIITRQPA--  269 (310)
Q Consensus       194 ~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va~~~~~~~~--  269 (310)
                      .......+.+++++|+|+.||++....++|..++++.   +.... ......|.++++++  +|. +|++........  
T Consensus       298 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~  372 (433)
T 3bws_A          298 TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---KKVQKSIPVFDKPNTIALSP--DGKYLYVSCRGPNHPTEG  372 (433)
T ss_dssp             EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT---TEEEEEEECSSSEEEEEECT--TSSEEEEEECCCCCTTTC
T ss_pred             eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC---CcEEEEecCCCCCCeEEEcC--CCCEEEEEecCCCccccc
Confidence            5433347889999999999999999999999999863   22221 22334588999999  996 777776432100  


Q ss_pred             ----CCCceeeEEECC-CCcEEEEEec
Q 048181          270 ----GTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       270 ----~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                          ...-+.+..+|. .|+++..+..
T Consensus       373 ~~~~g~~dg~v~~~d~~~~~~~~~~~~  399 (433)
T 3bws_A          373 YLKKGLVLGKVYVIDTTTDTVKEFWEA  399 (433)
T ss_dssp             TTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred             cccccccceEEEEEECCCCcEEEEecC
Confidence                000125666664 4666655543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.27  E-value=1.5e-10  Score=110.09  Aligned_cols=166  Identities=12%  Similarity=0.121  Sum_probs=106.6

Q ss_pred             CCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCC----ccccCccceEEeCC---CCeEEEEcCCCc
Q 048181           91 PICRRTFGLALHYATRQLYIADAYS-GLLVVGPNGRLATQLATGAEG----QAFHFLDGLDVDQG---TGVVYFTDASGV  162 (310)
Q Consensus        91 ~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g----~~~~~pndvavd~~---~G~lyvtd~~~~  162 (310)
                      ..+..|.+|+++ ++|+|||++... .|++++..+++.+.+......    .....+.||+++|+   +|.|||+++...
T Consensus        24 ~~l~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           24 SNLNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             CCCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCCCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            346689999997 799999999875 499998766665554321110    01245679999995   699999986310


Q ss_pred             cCccceeEeeeecCCCceEEEEcCCC--Ce---EEEeec-----CCCCCceeEEccCCCEEEEEecC-------------
Q 048181          163 YDFRTIVKLNITNDSTGRLLSYNPRS--SQ---VTVLLR-----NLTGPAGVAISVDSSFLLVSEFT-------------  219 (310)
Q Consensus       163 ~~~~~~~~~~~~~~~~G~l~~~d~~~--g~---~~~~~~-----~l~~pnGIa~~~dg~~Lyv~d~~-------------  219 (310)
                      -.....     ......+|+|++.+.  ++   .+++..     ....+++|+|+|||+ |||+.-.             
T Consensus       103 ~~~~~~-----~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~~~~~~~  176 (454)
T 1cru_A          103 PKSTDK-----ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLPN  176 (454)
T ss_dssp             TTC--C-----CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSCC
T ss_pred             cCCCcc-----ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcccccccc
Confidence            000000     000024677775432  12   233332     346789999999996 9998431             


Q ss_pred             -------------------CCeEEEEEecCCCC-C-------ceee--ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          220 -------------------GNRTLKYWLRGPRA-N-------SFDI--INFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       220 -------------------~~~I~~~~~~~~~~-g-------~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                                         .++|+|++.+|.-. +       ..++  .++- -|.||++|+  +|.||+++++.+
T Consensus       177 ~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp--~G~L~~~d~g~~  249 (454)
T 1cru_A          177 QAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTP--NGKLLQSEQGPN  249 (454)
T ss_dssp             CTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCS-EEEEEEECT--TSCEEEEEECSS
T ss_pred             ccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCC-CcceEEECC--CCCEEEEecCCC
Confidence                               46899999876410 0       1233  3333 499999999  999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.27  E-value=3e-09  Score=103.26  Aligned_cols=187  Identities=9%  Similarity=0.032  Sum_probs=122.9

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEEC--CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec----CCCeEE
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQA--PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY----ATRQLY  109 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~----~~g~Ly  109 (310)
                      |.+++++++|+.+|+...++.|..++.  ..... +..                  ......|.++++++    .+..||
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-~~~------------------i~~g~~p~~va~sp~~~~dg~~l~  241 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-VAE------------------IKIGIEARSVESSKFKGYEDRYTI  241 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-EEE------------------EECCSEEEEEEECCSTTCTTTEEE
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-EEE------------------EecCCCcceEEeCCCcCCCCCEEE
Confidence            889999999998888888899999998  43221 110                  02345789999984    455788


Q ss_pred             EEeC-CCcEEEEeCCCCeEEEeecc----CCC---ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          110 IADA-YSGLLVVGPNGRLATQLATG----AEG---QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       110 Vad~-~~gi~~id~~~~~~~~~~~~----~~g---~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                      +++. ...|..+|.++++.......    .++   .+-..+..++++++++.+|++...                 +|+|
T Consensus       242 v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----------------~g~i  304 (543)
T 1nir_A          242 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------------TGKV  304 (543)
T ss_dssp             EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEE
T ss_pred             EEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----------------CCeE
Confidence            8875 34588899887665332221    111   112356788999865667776543                 4788


Q ss_pred             EEEcCCCCeE-E-EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCC---ceeee-CCCC
Q 048181          182 LSYNPRSSQV-T-VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKP---HNIKR-NPGL  254 (310)
Q Consensus       182 ~~~d~~~g~~-~-~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~P---dgl~~-d~~~  254 (310)
                      +.+|..+.+. . .....-.+|.+++|+|||+++|++....+.|..++...   ++..- ......|   .+..+ ++  
T Consensus       305 ~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---g~l~~~i~~g~~ph~g~g~~~~~p--  379 (543)
T 1nir_A          305 LLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGKTPHPGRGANFVHP--  379 (543)
T ss_dssp             EEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSBCCTTCEEEEET--
T ss_pred             EEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---CeEEEeeccCCCCCCCCCcccCCC--
Confidence            8888765431 1 12233467999999999999999999899999988753   33211 1111123   24443 55  


Q ss_pred             C-CcEEEEEe
Q 048181          255 L-QTFWEAAI  263 (310)
Q Consensus       255 d-G~l~va~~  263 (310)
                      + |.+|++..
T Consensus       380 ~~g~~~~s~~  389 (543)
T 1nir_A          380 KYGPVWSTSH  389 (543)
T ss_dssp             TTEEEEEEEB
T ss_pred             CCccEEEecc
Confidence            5 78998875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.26  E-value=1.2e-10  Score=107.17  Aligned_cols=159  Identities=10%  Similarity=0.065  Sum_probs=102.6

Q ss_pred             CCceeeEEEecCCCe-EEEEeCCCcEEEEeCCCCeEEEeecc--CCCccccCccceEEeCC---CCeEEEEcCCCccCcc
Q 048181           93 CRRTFGLALHYATRQ-LYIADAYSGLLVVGPNGRLATQLATG--AEGQAFHFLDGLDVDQG---TGVVYFTDASGVYDFR  166 (310)
Q Consensus        93 ~~~P~Gla~d~~~g~-LyVad~~~gi~~id~~~~~~~~~~~~--~~g~~~~~pndvavd~~---~G~lyvtd~~~~~~~~  166 (310)
                      ...|.+|+++ ++|+ |||++....|++++.++...+.+...  ........+++|+++|+   +|.||++++.....  
T Consensus        17 l~~P~~i~~~-pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~--   93 (353)
T 2g8s_A           17 LDHPWALAFL-PDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD--   93 (353)
T ss_dssp             ESSEEEEEEC-STTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS--
T ss_pred             CCCcEEEEEc-CCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC--
Confidence            4689999997 7899 99999876699998765322222211  11112346789999994   59999997532000  


Q ss_pred             ceeEeeeecCCCceEEEEcCCCC-----eEEEeecC-------CCCCceeEEccCCCEEEEEec-------------CCC
Q 048181          167 TIVKLNITNDSTGRLLSYNPRSS-----QVTVLLRN-------LTGPAGVAISVDSSFLLVSEF-------------TGN  221 (310)
Q Consensus       167 ~~~~~~~~~~~~G~l~~~d~~~g-----~~~~~~~~-------l~~pnGIa~~~dg~~Lyv~d~-------------~~~  221 (310)
                              .....+|+|++.+.+     ..+++...       ...+++|+|+||| .||++.-             ..+
T Consensus        94 --------g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g  164 (353)
T 2g8s_A           94 --------GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQG  164 (353)
T ss_dssp             --------SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTT
T ss_pred             --------CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCe
Confidence                    000236777654322     23333322       3458999999999 6999963             246


Q ss_pred             eEEEEEecCCCC----------Cceee--ecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          222 RTLKYWLRGPRA----------NSFDI--INFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       222 ~I~~~~~~~~~~----------g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      +|+|++.++.-.          ...++  .++. .|.||++|++ +|+||+++.+.
T Consensus       165 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~-~g~l~~~d~g~  218 (353)
T 2g8s_A          165 KLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPW-SNALWLNEHGP  218 (353)
T ss_dssp             EEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETT-TTEEEEEEECS
T ss_pred             EEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECC-CCCEEEEecCC
Confidence            899999886410          01233  2333 4999999973 58999999875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.26  E-value=3e-09  Score=93.15  Aligned_cols=191  Identities=11%  Similarity=0.034  Sum_probs=123.4

Q ss_pred             eecceEEEeCCCCCCCcceEEEccCCCEEEEEeCC--CeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee
Q 048181           20 SIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVAD--GRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF   97 (310)
Q Consensus        20 ~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~--g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~   97 (310)
                      .-..+++++... -.+-+|+.++ ++.||.+.-..  ++|.+++++.+...-..                .+ +......
T Consensus        30 ~~~vv~~~phd~-~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~----------------~l-~~~~Fge   90 (262)
T 3nol_A           30 DYQIVHSYPHDT-KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI----------------EL-GKRYFGE   90 (262)
T ss_dssp             EEEEEEEEECCT-TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE----------------EC-CTTCCEE
T ss_pred             ceEEEEEecCCC-CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE----------------ec-CCcccee
Confidence            334566776653 2345999998 67766655443  48999999854321110                00 1112345


Q ss_pred             eEEEecCCCeEEEEeCCCc-EEEEeCCCCeEE-EeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181           98 GLALHYATRQLYIADAYSG-LLVVGPNGRLAT-QLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~-~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      |++++  +++||+++...+ ++++|+++.+.. .+..  .+    ..-+++.|  ++.||+||.+               
T Consensus        91 Git~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~--~~----eG~glt~d--g~~L~~SdGs---------------  145 (262)
T 3nol_A           91 GISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNY--DG----EGWGLTHN--DQYLIMSDGT---------------  145 (262)
T ss_dssp             EEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEEC--SS----CCCCEEEC--SSCEEECCSS---------------
T ss_pred             EEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEEC--CC----CceEEecC--CCEEEEECCC---------------
Confidence            78885  789999987654 899999886542 3321  11    12355544  5789999842               


Q ss_pred             CCCceEEEEcCCCCeEEEee------cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee----eecC----
Q 048181          176 DSTGRLLSYNPRSSQVTVLL------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD----IINF----  241 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~----~~~l----  241 (310)
                         ++|+.+|+.+.++..-+      ..+..+|.+.+. +| .||+.....+.|.++|+..   |.+.    +.++    
T Consensus       146 ---~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~t---G~V~~~Id~~~L~~~~  217 (262)
T 3nol_A          146 ---PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPET---GKVTGIIDLNGILAEA  217 (262)
T ss_dssp             ---SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTT---CBEEEEEECTTGGGGS
T ss_pred             ---CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCC---CcEEEEEECCcCcccc
Confidence               57999999887654322      134567889987 67 5999999999999998753   3332    1111    


Q ss_pred             ------CCCCceeeeCCCCCC-cEEEEEec
Q 048181          242 ------QAKPHNIKRNPGLLQ-TFWEAAII  264 (310)
Q Consensus       242 ------~g~Pdgl~~d~~~dG-~l~va~~~  264 (310)
                            ...|.|||+|+  ++ .|||+.-.
T Consensus       218 ~~~~~~~~vlNGIA~dp--~~~~lfVTGK~  245 (262)
T 3nol_A          218 GPLPSPIDVLNGIAWDK--EHHRLFVTGKL  245 (262)
T ss_dssp             CSCCSSCCCEEEEEEET--TTTEEEEEETT
T ss_pred             ccccCcCCceEEEEEcC--CCCEEEEECCC
Confidence                  13689999998  55 79999743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.24  E-value=4.9e-09  Score=91.88  Aligned_cols=192  Identities=12%  Similarity=0.013  Sum_probs=128.4

Q ss_pred             CCceeeeecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCC
Q 048181           14 LPRMVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGP   91 (310)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~   91 (310)
                      .|.-..+ ..+++++.+. -.+-+|+.++ ++.||.+.-..|+|.+++++.+..  .+ .                   +
T Consensus        37 ~~~~~~~-~Vv~~~phd~-~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-------------------~   93 (268)
T 3nok_A           37 EPVRRVA-HIIREYPHAT-NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-------------------L   93 (268)
T ss_dssp             CCEEEEE-EEEEEEECCT-TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-------------------C
T ss_pred             Cccccce-EEEEEEcCCC-ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-------------------C
Confidence            4444444 4577787763 2456899998 467777776778999999885432  11 1                   1


Q ss_pred             CCCceeeEEEecCCCeEEEEeCCCc-EEEEeCCCCeEE-EeeccCCCccccCccceEEeCCCCeEEEEcCCCccCcccee
Q 048181           92 ICRRTFGLALHYATRQLYIADAYSG-LLVVGPNGRLAT-QLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIV  169 (310)
Q Consensus        92 ~~~~P~Gla~d~~~g~LyVad~~~g-i~~id~~~~~~~-~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~  169 (310)
                      ......|++++  +++||+++...+ ++++|+++.+.. .+.  ..+    ..-+++.|  +++||+||.+         
T Consensus        94 ~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~--~~~----eGwGLt~D--g~~L~vSdGs---------  154 (268)
T 3nok_A           94 GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTR--YSG----EGWGLCYW--NGKLVRSDGG---------  154 (268)
T ss_dssp             TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEE--CSS----CCCCEEEE--TTEEEEECSS---------
T ss_pred             CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEe--CCC----ceeEEecC--CCEEEEECCC---------
Confidence            11233578884  789999987655 899999986643 332  121    12466665  5899999842         


Q ss_pred             EeeeecCCCceEEEEcCCCCeEEEeec------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee----ee
Q 048181          170 KLNITNDSTGRLLSYNPRSSQVTVLLR------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD----II  239 (310)
Q Consensus       170 ~~~~~~~~~G~l~~~d~~~g~~~~~~~------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~----~~  239 (310)
                               ++|+.+|+.+.++..-+.      .+.++|.+.+. +| .||++....++|.++|+..   |.+.    +.
T Consensus       155 ---------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~T---G~V~~~Idl~  220 (268)
T 3nok_A          155 ---------TMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPAT---GTVVGVIDAS  220 (268)
T ss_dssp             ---------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTT---CBEEEEEECH
T ss_pred             ---------CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCC---CcEEEEEECC
Confidence                     579999998876543221      34577999987 67 5999999999999999753   3321    11


Q ss_pred             cC-----------CCCCceeeeCCCCCC-cEEEEEe
Q 048181          240 NF-----------QAKPHNIKRNPGLLQ-TFWEAAI  263 (310)
Q Consensus       240 ~l-----------~g~Pdgl~~d~~~dG-~l~va~~  263 (310)
                      ++           ...|.|||.|+  ++ .|||+--
T Consensus       221 ~L~~~~~~~~~~~~~vlNGIA~dp--~~~rlfVTGK  254 (268)
T 3nok_A          221 ALTRAVAGQVTNPEAVLNGIAVEP--GSGRIFMTGK  254 (268)
T ss_dssp             HHHHHHTTTCCCTTCCEEEEEECT--TTCCEEEEET
T ss_pred             CCcccccccccCcCCceEEEEEcC--CCCEEEEeCC
Confidence            11           13689999998  54 7999853

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.21  E-value=1.2e-08  Score=94.58  Aligned_cols=184  Identities=13%  Similarity=0.128  Sum_probs=126.0

Q ss_pred             CCcceEEEccCCCEEEE-EeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVGGAFYT-GVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~-d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ..|.+++|+++|..+|+ +..++.|+.++...+.....                   ......|.++++++.+..||++.
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~l~~~~  272 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-------------------TDKIGLPRGLLLSKDGKELYIAQ  272 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-------------------CCCCSEEEEEEECTTSSEEEEEE
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-------------------ecCCCCceEEEEcCCCCEEEEEE
Confidence            57899999999886654 44789999999875432211                   12234588999974444677776


Q ss_pred             C--------CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          113 A--------YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       113 ~--------~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      .        ...|..+|..+++......     ....+..+++++++..+|++...                 ++++..+
T Consensus       273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~-----------------~~~v~v~  330 (433)
T 3bws_A          273 FSASNQESGGGRLGIYSMDKEKLIDTIG-----PPGNKRHIVSGNTENKIYVSDMC-----------------CSKIEVY  330 (433)
T ss_dssp             EESCTTCSCCEEEEEEETTTTEEEEEEE-----EEECEEEEEECSSTTEEEEEETT-----------------TTEEEEE
T ss_pred             CCCCccccCCCeEEEEECCCCcEEeecc-----CCCCcceEEECCCCCEEEEEecC-----------------CCEEEEE
Confidence            3        2248889988776543321     11256789999953368888653                 3789999


Q ss_pred             cCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCC--------------CeEEEEEecCCCCCcee-eecCCCCCceee
Q 048181          185 NPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG--------------NRTLKYWLRGPRANSFD-IINFQAKPHNIK  249 (310)
Q Consensus       185 d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~--------------~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~  249 (310)
                      |..+++..........+++++++|||++||++....              ++|+.+++..   ++.. .......|.+++
T Consensus       331 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~---~~~~~~~~~~~~~~~~~  407 (433)
T 3bws_A          331 DLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT---DTVKEFWEAGNQPTGLD  407 (433)
T ss_dssp             ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT---TEEEEEEECSSSEEEEE
T ss_pred             ECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC---CcEEEEecCCCCCceEE
Confidence            988787665555566789999999999999988764              4899998753   3222 122234689999


Q ss_pred             eCCCCCCcE-EEEEe
Q 048181          250 RNPGLLQTF-WEAAI  263 (310)
Q Consensus       250 ~d~~~dG~l-~va~~  263 (310)
                      +++  +|+. +++..
T Consensus       408 ~s~--dg~~l~~~~~  420 (433)
T 3bws_A          408 VSP--DNRYLVISDF  420 (433)
T ss_dssp             ECT--TSCEEEEEET
T ss_pred             EcC--CCCEEEEEEC
Confidence            999  9965 45544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.21  E-value=3.5e-09  Score=102.80  Aligned_cols=201  Identities=8%  Similarity=-0.060  Sum_probs=135.8

Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEE
Q 048181           40 AFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLV  119 (310)
Q Consensus        40 a~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~  119 (310)
                      ++++++.+|++...++.|..++...+...-..                   .....|+++++++....||+++....|..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i-------------------~~g~~~~~v~~spdg~~l~v~~~d~~V~v  204 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI-------------------DTGYAVHISRMSASGRYLLVIGRDARIDM  204 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEE-------------------ECSTTEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEE-------------------ecCcccceEEECCCCCEEEEECCCCeEEE
Confidence            47888888888888899999998744221100                   11223889999855557899987766999


Q ss_pred             EeC--CCCeEEEeeccCCCccccCccceEEeC----CCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          120 VGP--NGRLATQLATGAEGQAFHFLDGLDVDQ----GTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       120 id~--~~~~~~~~~~~~~g~~~~~pndvavd~----~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      +|.  ++++...-..  .+   ..|..++++|    ++..+|+++..                 ++.+..+|..++++..
T Consensus       205 ~D~~~~t~~~~~~i~--~g---~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~  262 (543)
T 1nir_A          205 IDLWAKEPTKVAEIK--IG---IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQ  262 (543)
T ss_dssp             EETTSSSCEEEEEEE--CC---SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEE
T ss_pred             EECcCCCCcEEEEEe--cC---CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccce
Confidence            998  6655322111  12   3578999998    86678888632                 2567778877776544


Q ss_pred             eecC------------CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCc-EEE
Q 048181          194 LLRN------------LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQT-FWE  260 (310)
Q Consensus       194 ~~~~------------l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~-l~v  260 (310)
                      ....            -..+.+|+++++++.+|++....++|+.+++...+.-..........|.++++++  +|+ +|+
T Consensus       263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp--dg~~l~v  340 (543)
T 1nir_A          263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS--SHRYFMT  340 (543)
T ss_dssp             EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT--TSCEEEE
T ss_pred             eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC--CCCEEEE
Confidence            3321            1256799999999999999999999999998643211111122234699999999  997 677


Q ss_pred             EEecCCCCCCCCceeeEEECC-CCcEEEEEec
Q 048181          261 AAIITRQPAGTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       261 a~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                      +.....        .+..+|. +|+++..+..
T Consensus       341 a~~~~~--------~v~v~D~~tg~l~~~i~~  364 (543)
T 1nir_A          341 AANNSN--------KVAVIDSKDRRLSALVDV  364 (543)
T ss_dssp             EEGGGT--------EEEEEETTTTEEEEEEEC
T ss_pred             EecCCC--------eEEEEECCCCeEEEeecc
Confidence            765442        5666774 5777776664

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.19  E-value=3.9e-09  Score=92.56  Aligned_cols=176  Identities=12%  Similarity=0.063  Sum_probs=109.4

Q ss_pred             cceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECC--CceEEeeeecCCCCccccCCCccccCCCCCCceeeE
Q 048181           22 PTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAP--DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGL   99 (310)
Q Consensus        22 ~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~--g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gl   99 (310)
                      ..++++++.+ +.-+|||+++++|.+++++-.+++++.+..+  +.........       ..    ....+.....-||
T Consensus        59 ~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~-------~~----~~~~~~N~g~EGL  126 (255)
T 3qqz_A           59 DLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIK-------IP----LQESPTNCGFEGL  126 (255)
T ss_dssp             CEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEE-------CC----CSSCCCSSCCEEE
T ss_pred             CEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeec-------cc----cccccccCCcceE
Confidence            3455677764 5679999999988866777778899877543  3222111100       00    0001122234699


Q ss_pred             EEecCCCeEEEEeCC-C-cEEEEe--CCCCeEEEeecc-C-CCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181          100 ALHYATRQLYIADAY-S-GLLVVG--PNGRLATQLATG-A-EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus       100 a~d~~~g~LyVad~~-~-gi~~id--~~~~~~~~~~~~-~-~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      ++|+..++||++... . .|+.++  +.+...+.+-.. . ....+.-+.++++||.+|++|+.....            
T Consensus       127 A~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s------------  194 (255)
T 3qqz_A          127 AYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES------------  194 (255)
T ss_dssp             EEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT------------
T ss_pred             EEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCC------------
Confidence            999777799997543 3 588887  222223322110 0 111344578999999999999875432            


Q ss_pred             ecCCCceEEEEcCCCCeEEEe---ec-------CCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          174 TNDSTGRLLSYNPRSSQVTVL---LR-------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~---~~-------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                           ..|+.+|.+ |++...   ..       .+..|.|||++++|+ |||+ +..+.+|+|...
T Consensus       195 -----~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          195 -----RALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             -----TEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEEC-
T ss_pred             -----CeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEEec
Confidence                 467777775 443322   11       246899999999997 8998 455799999753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.19  E-value=4e-09  Score=96.51  Aligned_cols=152  Identities=12%  Similarity=0.069  Sum_probs=94.5

Q ss_pred             CCceeeEEEecCCC-eEEEEeCC-CcEEEEeCC-CCeEEEeeccCCCc-cccCccceEEeCCCCeEEEEcCCCccCccce
Q 048181           93 CRRTFGLALHYATR-QLYIADAY-SGLLVVGPN-GRLATQLATGAEGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTI  168 (310)
Q Consensus        93 ~~~P~Gla~d~~~g-~LyVad~~-~gi~~id~~-~~~~~~~~~~~~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~  168 (310)
                      ...|++++++ ++| .||+++.. ..|..++.+ +++...+.. .... +...|.+++++|++..+|+++....      
T Consensus       144 ~~~~~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-~~~~~~g~~p~~~~~spdg~~l~v~~~~~~------  215 (365)
T 1jof_A          144 NTGIHGMVFD-PTETYLYSADLTANKLWTHRKLASGEVELVGS-VDAPDPGDHPRWVAMHPTGNYLYALMEAGN------  215 (365)
T ss_dssp             TCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-EECSSTTCCEEEEEECTTSSEEEEEETTTT------
T ss_pred             CCcceEEEEC-CCCCEEEEEcCCCCEEEEEEECCCCCEEEeee-EecCCCCCCCCEeEECCCCCEEEEEECCCC------
Confidence            3578999998 566 58888865 458888876 666543321 1111 1245899999996337888864320      


Q ss_pred             eEeeeecCCCceEEEEcCCCCeEEE---eecCC-------C-------CCceeE-EccCCCEEEEEecCCC-----eEEE
Q 048181          169 VKLNITNDSTGRLLSYNPRSSQVTV---LLRNL-------T-------GPAGVA-ISVDSSFLLVSEFTGN-----RTLK  225 (310)
Q Consensus       169 ~~~~~~~~~~G~l~~~d~~~g~~~~---~~~~l-------~-------~pnGIa-~~~dg~~Lyv~d~~~~-----~I~~  225 (310)
                               .=.++.+|..+++...   ....+       .       .|.+++ ++|||++||+++...+     +|..
T Consensus       216 ---------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v  286 (365)
T 1jof_A          216 ---------RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG  286 (365)
T ss_dssp             ---------EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred             ---------eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEE
Confidence                     0134555655565431   11111       1       478999 9999999999987655     8998


Q ss_pred             EEecCCCCCceee-----ecCCCCCceeeeCCCCC---C-cEEEEEecC
Q 048181          226 YWLRGPRANSFDI-----INFQAKPHNIKRNPGLL---Q-TFWEAAIIT  265 (310)
Q Consensus       226 ~~~~~~~~g~~~~-----~~l~g~Pdgl~~d~~~d---G-~l~va~~~~  265 (310)
                      |+++.  .|....     ......|.++++++  +   | .||++....
T Consensus       287 ~~~~~--~g~~~~~~~~~~~~~~~~~~~a~sp--~~~dg~~l~v~~~~~  331 (365)
T 1jof_A          287 FKLRD--CGSIEKQLFLSPTPTSGGHSNAVSP--CPWSDEWMAITDDQE  331 (365)
T ss_dssp             EEECT--TSCEEEEEEEEECSSCCTTCCCEEE--CTTCTTEEEEECSSS
T ss_pred             EEECC--CCCEEEeeeeeecCCCCcccceecC--CCcCCCEEEEEEcCC
Confidence            98862  243331     11233588888875  4   4 578886653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.18  E-value=5e-08  Score=90.23  Aligned_cols=226  Identities=12%  Similarity=-0.020  Sum_probs=125.3

Q ss_pred             CCcceEEEccCCCEEEEEe----------CCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           34 FGGESIAFEPVGGAFYTGV----------ADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~----------~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      ..| ++++++||+.+|+..          .++.|..++......  .+..          .+.  ... .....|.++++
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~----------~~~--~~~-~~g~~p~~~~~  132 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL----------PDA--PRF-DVGPYSWMNAN  132 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC----------CCc--ccc-ccCCCccceEE
Confidence            368 999999998777764          246688898863211  1111          000  000 11246889999


Q ss_pred             ecCCCeEEEEeCC--CcEEEEeCCCCeEEEe-eccCCCccccCccc----eEEeCCCCeEEEEcCCCccC---------c
Q 048181          102 HYATRQLYIADAY--SGLLVVGPNGRLATQL-ATGAEGQAFHFLDG----LDVDQGTGVVYFTDASGVYD---------F  165 (310)
Q Consensus       102 d~~~g~LyVad~~--~gi~~id~~~~~~~~~-~~~~~g~~~~~pnd----vavd~~~G~lyvtd~~~~~~---------~  165 (310)
                      ++...+|||++..  +.|..|| +++++... .. ..+.....|.+    ++..+ +|.+.+-|......         .
T Consensus       133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~-dg~~~~vd~~g~~~~~~~~~~~~~  209 (373)
T 2mad_H          133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-SPTCYHIHPGAPSTFYLLCA-QGGLAKTDHAGGAAGAGLVGAMLT  209 (373)
T ss_pred             CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-CCceEEEEeCCCceEEEEcC-CCCEEEEECCCcEEEEEecccccc
Confidence            8656679998753  4599999 88765322 21 11111111222    33444 24443333211000         0


Q ss_pred             c-c--eeE--------eeeecCCCceEEEEcCCCCeEEEee----------cCCCCCce---eEEccCCCEEEEEec---
Q 048181          166 R-T--IVK--------LNITNDSTGRLLSYNPRSSQVTVLL----------RNLTGPAG---VAISVDSSFLLVSEF---  218 (310)
Q Consensus       166 ~-~--~~~--------~~~~~~~~G~l~~~d~~~g~~~~~~----------~~l~~pnG---Ia~~~dg~~Lyv~d~---  218 (310)
                      . .  +..        ..+.....+.++.+|..++..+.+.          .....|.|   +++++|+++|||+..   
T Consensus       210 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~  289 (373)
T 2mad_H          210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS  289 (373)
T ss_pred             CCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence            0 0  000        0001112456777777544322211          01114677   999999999999864   


Q ss_pred             ------CCCeEEEEEecCCCCCcee-eecCCCCCceeeeCCCCCCc-EEEEEe-cCCCCCCCCceeeEEECC-CCcEEEE
Q 048181          219 ------TGNRTLKYWLRGPRANSFD-IINFQAKPHNIKRNPGLLQT-FWEAAI-ITRQPAGTPVPIGQRISA-FGAVLDT  288 (310)
Q Consensus       219 ------~~~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~~~dG~-l~va~~-~~~~~~~~~~~~v~~~~~-~G~~~~~  288 (310)
                            ..+.|+++|...   ++.. ...+.+.|.+|++++  ||+ +|++.. ..        ..|..+|. .++++..
T Consensus       290 ~~~~~~~~~~V~VID~~t---~~vv~~i~~g~~p~~i~~s~--Dg~~~l~v~~~~~--------~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          290 AWKLHAAAKEVTSVTGLV---GQTSSQISLGHDVDAISVAQ--DGGPDLYALSAGT--------EVLHIYDAGAGDQDQS  356 (373)
T ss_pred             cccccCCCCeEEEEECCC---CEEEEEEECCCCcCeEEECC--CCCeEEEEEcCCC--------CeEEEEECCCCCEEee
Confidence                  246899999753   2221 133445799999999  998 544444 33        27888996 5888887


Q ss_pred             E
Q 048181          289 I  289 (310)
Q Consensus       289 ~  289 (310)
                      +
T Consensus       357 i  357 (373)
T 2mad_H          357 T  357 (373)
T ss_pred             e
Confidence            4

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.17  E-value=4.2e-09  Score=91.40  Aligned_cols=161  Identities=16%  Similarity=0.063  Sum_probs=112.3

Q ss_pred             CceeeEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181           94 RRTFGLALHYATRQLYIADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK  170 (310)
Q Consensus        94 ~~P~Gla~d~~~g~LyVad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~  170 (310)
                      ..-.||.++  +++||++....   .|.++|++++++..-.. .+.  -.+..+++++  +++||+.+..          
T Consensus        21 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~--~~fgeGi~~~--~~~ly~ltw~----------   83 (243)
T 3mbr_X           21 AFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAE-VPP--PYFGAGIVAW--RDRLIQLTWR----------   83 (243)
T ss_dssp             CCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCT--TCCEEEEEEE--TTEEEEEESS----------
T ss_pred             cccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEe-CCC--CcceeEEEEe--CCEEEEEEee----------
Confidence            345699997  48999987653   49999999987643222 222  2345678887  4899998754          


Q ss_pred             eeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC-CCceee-e-cCC-CCCc
Q 048181          171 LNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR-ANSFDI-I-NFQ-AKPH  246 (310)
Q Consensus       171 ~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~-~g~~~~-~-~l~-g~Pd  246 (310)
                             ++.++.||+++.++..-..-  .+.|.++++|++.||+++ .+++|+.+|...-+ .++.++ . +.+ ..+.
T Consensus        84 -------~~~v~v~D~~tl~~~~ti~~--~~~Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN  153 (243)
T 3mbr_X           84 -------NHEGFVYDLATLTPRARFRY--PGEGWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN  153 (243)
T ss_dssp             -------SSEEEEEETTTTEEEEEEEC--SSCCCEEEECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             -------CCEEEEEECCcCcEEEEEeC--CCCceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence                   37899999988776443332  236777778888999999 58899999865321 111222 1 111 2345


Q ss_pred             eeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          247 NIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       247 gl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                      .|.+.   +|.||+..|..        ..+.++|| +|+++..|.+.
T Consensus       154 eLe~~---~G~lyanvw~s--------~~I~vIDp~tG~V~~~idl~  189 (243)
T 3mbr_X          154 ELEWV---NGELLANVWLT--------SRIARIDPASGKVVAWIDLQ  189 (243)
T ss_dssp             EEEEE---TTEEEEEETTT--------TEEEEECTTTCBEEEEEECG
T ss_pred             eeEEe---CCEEEEEECCC--------CeEEEEECCCCCEEEEEECC
Confidence            56665   58999999876        38999998 69999999976

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.16  E-value=2.2e-08  Score=89.32  Aligned_cols=192  Identities=11%  Similarity=0.093  Sum_probs=121.0

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEE
Q 048181           39 IAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLL  118 (310)
Q Consensus        39 ia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~  118 (310)
                      +++. +|. +|+...++.|+++++++.. .+....                  .......++++ .+|+||++....+|+
T Consensus       103 ~~~~-~~~-l~v~t~~~~l~~~d~~g~~-~~~~~~------------------~~~~~~~~~~~-~~g~l~vgt~~~~l~  160 (330)
T 3hxj_A          103 FTIF-EDI-LYVTSMDGHLYAINTDGTE-KWRFKT------------------KKAIYATPIVS-EDGTIYVGSNDNYLY  160 (330)
T ss_dssp             EEEE-TTE-EEEECTTSEEEEECTTSCE-EEEEEC------------------SSCCCSCCEEC-TTSCEEEECTTSEEE
T ss_pred             ceEE-CCE-EEEEecCCEEEEEcCCCCE-EEEEcC------------------CCceeeeeEEc-CCCEEEEEcCCCEEE
Confidence            4444 445 6667677889999887432 222110                  01112345665 688999987667799


Q ss_pred             EEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE-eecC
Q 048181          119 VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV-LLRN  197 (310)
Q Consensus       119 ~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~-~~~~  197 (310)
                      .+|++ ++...... ..   ......+++++ +|++|++. .                   .|+++|+ +++... ....
T Consensus       161 ~~d~~-g~~~~~~~-~~---~~~~~~~~~d~-~g~l~v~t-~-------------------~l~~~d~-~g~~~~~~~~~  213 (330)
T 3hxj_A          161 AINPD-GTEKWRFK-TN---DAITSAASIGK-DGTIYFGS-D-------------------KVYAINP-DGTEKWNFYAG  213 (330)
T ss_dssp             EECTT-SCEEEEEE-CS---SCCCSCCEECT-TCCEEEES-S-------------------SEEEECT-TSCEEEEECCS
T ss_pred             EECCC-CCEeEEEe-cC---CCceeeeEEcC-CCEEEEEe-C-------------------EEEEECC-CCcEEEEEccC
Confidence            99988 44322111 11   12356788888 59999975 2                   4777774 343322 1222


Q ss_pred             CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeE
Q 048181          198 LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQ  277 (310)
Q Consensus       198 l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~  277 (310)
                      ......++++++|+ ||++.. .+.|++++.++..  ..........+..+.++.  +|+||++....         .+.
T Consensus       214 ~~~~~~~~~~~~g~-l~v~t~-~~gl~~~~~~g~~--~~~~~~~~~~~~~~~~~~--~g~l~v~t~~g---------gl~  278 (330)
T 3hxj_A          214 YWTVTRPAISEDGT-IYVTSL-DGHLYAINPDGTE--KWRFKTGKRIESSPVIGN--TDTIYFGSYDG---------HLY  278 (330)
T ss_dssp             SCCCSCCEECTTSC-EEEEET-TTEEEEECTTSCE--EEEEECSSCCCSCCEECT--TSCEEEECTTC---------EEE
T ss_pred             CcceeceEECCCCe-EEEEcC-CCeEEEECCCCCE--eEEeeCCCCccccceEcC--CCeEEEecCCC---------CEE
Confidence            24568899999886 888754 6788888643321  111111123456688998  99999998764         699


Q ss_pred             EECCCCcEEEEEecCCC
Q 048181          278 RISAFGAVLDTISFEAQ  294 (310)
Q Consensus       278 ~~~~~G~~~~~~~~p~~  294 (310)
                      ++|++|+.+..+..+..
T Consensus       279 ~~d~~g~~~~~~~~~~~  295 (330)
T 3hxj_A          279 AINPDGTEKWNFETGSW  295 (330)
T ss_dssp             EECTTSCEEEEEECSSC
T ss_pred             EECCCCcEEEEEEcCCc
Confidence            99999999998888744

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.14  E-value=9.9e-09  Score=95.20  Aligned_cols=238  Identities=10%  Similarity=-0.000  Sum_probs=140.6

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEe----------CCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCC
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGV----------ADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGP   91 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~----------~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~   91 (310)
                      +.+++..   ..|. ++++|||+.+|+..          ..+.|..||......  .+...         .|+    ...
T Consensus        72 ~~~I~vG---~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~---------~g~----r~~  134 (386)
T 3sjl_D           72 IGMIDGG---FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP---------DAP----RFL  134 (386)
T ss_dssp             EEEEEEC---SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET---------TCC----CCC
T ss_pred             EEEEECC---CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC---------Ccc----ccc
Confidence            3445444   3575 99999998666654          245688998875321  22110         000    011


Q ss_pred             CCCceeeEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEeeccCCCccccCccc----eEEeCCCCeEEEEcCCC--cc
Q 048181           92 ICRRTFGLALHYATRQLYIADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDG----LDVDQGTGVVYFTDASG--VY  163 (310)
Q Consensus        92 ~~~~P~Gla~d~~~g~LyVad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pnd----vavd~~~G~lyvtd~~~--~~  163 (310)
                      ....|.++++++...+|||++..  +.|..||.+++++..-.. ..+....+|.+    +++.++ |.+.+.+...  ..
T Consensus       135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g~~~~~P~g~~~~~~~~~D-G~~~~v~~~~~g~v  212 (386)
T 3sjl_D          135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPDTFFMHCRD-GSLAKVAFGTEGTP  212 (386)
T ss_dssp             BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETT-SCEEEEECCSSSCC
T ss_pred             cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCCcceeecCCCceeEEECCC-CCEEEEECCCCCeE
Confidence            24579999998555579999863  459999999887532221 22222334555    477884 6665555432  11


Q ss_pred             --------Ccc-ceeE----------eeeecCCCceEEEEcCCCCeEEEeecCC-----------CCCce---eEEccCC
Q 048181          164 --------DFR-TIVK----------LNITNDSTGRLLSYNPRSSQVTVLLRNL-----------TGPAG---VAISVDS  210 (310)
Q Consensus       164 --------~~~-~~~~----------~~~~~~~~G~l~~~d~~~g~~~~~~~~l-----------~~pnG---Ia~~~dg  210 (310)
                              ... ....          ..+.....|+++.+|..++.+++.. ..           -.|.|   +++++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~-~~~~~~~~~~~~g~~p~g~q~~a~~~~~  291 (386)
T 3sjl_D          213 EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP-AVEALTEAERADGWRPGGWQQVAYHRAL  291 (386)
T ss_dssp             EEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECC-CEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             EEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeec-ceeccccccccccccCCCcceeeECCCC
Confidence                    100 0000          0011122456677776544433221 11           12334   8999999


Q ss_pred             CEEEEEec---------CCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc--EEEEEecCCCCCCCCceeeEE
Q 048181          211 SFLLVSEF---------TGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT--FWEAAIITRQPAGTPVPIGQR  278 (310)
Q Consensus       211 ~~Lyv~d~---------~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~--l~va~~~~~~~~~~~~~~v~~  278 (310)
                      ++|||+..         ..++|+.+|...   ++..- ..+...|.+|+++.  ||.  ||++.+..+        .|..
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t---~kv~~~i~vg~~~~~lavs~--D~~~~ly~tn~~~~--------~VsV  358 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKT---GERLAKFEMGHEIDSINVSQ--DEKPLLYALSTGDK--------TLYI  358 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTT---CCEEEEEEEEEEECEEEECS--SSSCEEEEEETTTT--------EEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCC---CeEEEEEECCCCcceEEECC--CCCeEEEEEcCCCC--------eEEE
Confidence            99999864         246899999854   22211 22333589999999  995  677776543        6888


Q ss_pred             ECC-CCcEEEEEecCCC
Q 048181          279 ISA-FGAVLDTISFEAQ  294 (310)
Q Consensus       279 ~~~-~G~~~~~~~~p~~  294 (310)
                      +|. .|+++..+..+..
T Consensus       359 iD~~t~k~~~~i~~~~~  375 (386)
T 3sjl_D          359 HDAESGEELRSVNQLGH  375 (386)
T ss_dssp             EETTTCCEEEEECCCCS
T ss_pred             EECCCCcEEEEecCCCC
Confidence            895 7999999999854

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.11  E-value=2e-08  Score=101.24  Aligned_cols=205  Identities=10%  Similarity=0.089  Sum_probs=137.2

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ...+++.|++|+ +|++...+.|+++++.++ .+.+..                . .........|+.| ++|+|||+..
T Consensus       408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~----------------~-~~~~~~v~~i~~d-~~g~lwigt~  468 (781)
T 3v9f_A          408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIEL----------------E-KNELLDVRVFYED-KNKKIWIGTH  468 (781)
T ss_dssp             BEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCS----------------T-TTCCCCEEEEEEC-TTSEEEEEET
T ss_pred             ceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEecc----------------C-CCCCCeEEEEEEC-CCCCEEEEEC
Confidence            456788888888 566776778999998744 333210                0 0112345678887 7899999876


Q ss_pred             CCcEEEEeCCCCeEEEeeccCC-CccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAE-GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~-g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                       .||+++++++++.+.+..... .......++++.|+ +|+||++...                  +.|+++|+++++.+
T Consensus       469 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~------------------~Gl~~~~~~~~~~~  528 (781)
T 3v9f_A          469 -AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFG------------------GGVGIYTPDMQLVR  528 (781)
T ss_dssp             -TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESS------------------SCEEEECTTCCEEE
T ss_pred             -CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEEEEcC------------------CCEEEEeCCCCeEE
Confidence             689999998876554432211 11235678899999 5999998642                  24899998877766


Q ss_pred             Eeec--CCC--CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee----ecCCC-CCceeeeCCCCCCcEEEEEe
Q 048181          193 VLLR--NLT--GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI----INFQA-KPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       193 ~~~~--~l~--~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~----~~l~g-~Pdgl~~d~~~dG~l~va~~  263 (310)
                      ....  ++.  ..+.|+.+++|+ ||++-. .+-|.+|+...   +..+.    .+++. ...++..|+  +|+||++..
T Consensus       529 ~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~-~Glv~~~d~~~---~~~~~~~~~~gl~~~~i~~i~~d~--~g~lW~~t~  601 (781)
T 3v9f_A          529 KFNQYEGFCSNTINQIYRSSKGQ-MWLATG-EGLVCFPSARN---FDYQVFQRKEGLPNTHIRAISEDK--NGNIWASTN  601 (781)
T ss_dssp             EECTTTTCSCSCEEEEEECTTSC-EEEEET-TEEEEESCTTT---CCCEEECGGGTCSCCCCCEEEECS--SSCEEEECS
T ss_pred             EccCCCCCCCCeeEEEEECCCCC-EEEEEC-CCceEEECCCC---CcEEEccccCCCCCceEEEEEECC--CCCEEEEcC
Confidence            6542  222  235788888887 888755 44338887643   22322    33442 345799999  999999975


Q ss_pred             cCCCCCCCCceeeEEECCCCcEEEEEecCCCc
Q 048181          264 ITRQPAGTPVPIGQRISAFGAVLDTISFEAQY  295 (310)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~  295 (310)
                      .          .+.+++|+.+....+....|.
T Consensus       602 ~----------Gl~~~~~~~~~~~~~~~~dGl  623 (781)
T 3v9f_A          602 T----------GISCYITSKKCFYTYDHSNNI  623 (781)
T ss_dssp             S----------CEEEEETTTTEEEEECGGGTC
T ss_pred             C----------ceEEEECCCCceEEecccCCc
Confidence            4          488899988877887766554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.11  E-value=1.1e-09  Score=100.70  Aligned_cols=154  Identities=15%  Similarity=0.152  Sum_probs=101.1

Q ss_pred             CCcceEEEcc--CC--CEEEEEeCC--C--eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           34 FGGESIAFEP--VG--GAFYTGVAD--G--RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        34 ~~Pegia~d~--~G--~l~~~d~~~--g--~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      ..|-||.+.+  +|  +||+++...  .  .|++++++++..++...        .++       ....+|+.++++ ++
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~--------~~g-------~~~~~pND~~v~-~~  175 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT--------IRH-------KLLPSVNDIVAV-GP  175 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE--------ECC-------TTCSSEEEEEEE-ET
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEec--------ccc-------CCCCCCceEEEe-CC
Confidence            3799999866  45  466666542  2  47888888665443311        111       346789999998 78


Q ss_pred             CeEEEEeC-----------------CC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccc
Q 048181          106 RQLYIADA-----------------YS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRT  167 (310)
Q Consensus       106 g~LyVad~-----------------~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~  167 (310)
                      |++|+++.                 .. +|+++++.  +.+.+..     .+.+|||++++|++..+||+|+..      
T Consensus       176 G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~-----~l~~pNGia~spDg~~lYvadt~~------  242 (355)
T 3sre_A          176 EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE-----GFDFANGINISPDGKYVYIAELLA------  242 (355)
T ss_dssp             TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE-----EESSEEEEEECTTSSEEEEEEGGG------
T ss_pred             CCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec-----CCcccCcceECCCCCEEEEEeCCC------
Confidence            99999864                 11 38999874  4444432     467899999999644899999754      


Q ss_pred             eeEeeeecCCCceEEEEcCC-CCeEEE--eecCCCCCceeEEcc-CCCEEEEEe-cCCCeEEEEEe
Q 048181          168 IVKLNITNDSTGRLLSYNPR-SSQVTV--LLRNLTGPAGVAISV-DSSFLLVSE-FTGNRTLKYWL  228 (310)
Q Consensus       168 ~~~~~~~~~~~G~l~~~d~~-~g~~~~--~~~~l~~pnGIa~~~-dg~~Lyv~d-~~~~~I~~~~~  228 (310)
                                 ++|++|+.+ ++++..  ...-...|+||++++ +|+ ||++. ....+|.+|+.
T Consensus       243 -----------~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          243 -----------HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             -----------TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC-EEEEEESCHHHHHSCCT
T ss_pred             -----------CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCc-EEEEecCCceEEEEECC
Confidence                       467666642 233321  122235799999999 597 89965 34445555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.10  E-value=4.1e-08  Score=99.18  Aligned_cols=222  Identities=11%  Similarity=0.096  Sum_probs=143.6

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEeC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIADA  113 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad~  113 (310)
                      ..+++.|++|+ +|++..++.|.++++..+ ...+.....        +   ....-.......++.| .+|+ |||+..
T Consensus       359 V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~--------~---~~~~l~~~~v~~i~~d-~~g~~lWigt~  425 (795)
T 4a2l_A          359 VSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQED--------E---SARGIGSNNIKAVYVD-EKKSLVYIGTH  425 (795)
T ss_dssp             EEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC-----------------CCSCSCEEEEEEE-TTTTEEEEEET
T ss_pred             eEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCC--------C---cccCCCCccEEEEEEc-CCCCEEEEEeC
Confidence            56788899998 667777778999998744 433321000        0   0000012345678887 7899 999877


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ..||.++++++++.+.+.......+-.....++.|+ +|+||++..                   +.|+++|+++++.+.
T Consensus       426 ~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~-------------------~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          426 AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL-------------------SALVRFNPEQRSFTT  485 (795)
T ss_dssp             TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES-------------------SCEEEEETTTTEEEE
T ss_pred             cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec-------------------CceeEEeCCCCeEEE
Confidence            778999999988776654321111224567888898 599999853                   238899988777665


Q ss_pred             eecC-----C--CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee---e-ecCC-CCCceeeeCCCCCCcEEEE
Q 048181          194 LLRN-----L--TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD---I-INFQ-AKPHNIKRNPGLLQTFWEA  261 (310)
Q Consensus       194 ~~~~-----l--~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~---~-~~l~-g~Pdgl~~d~~~dG~l~va  261 (310)
                      ....     +  ...+.|+.+++|+ ||++..  +.|++|+...... ...   . ..++ .....|..|.  +|+||++
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~--~g~lWig  559 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEAS--NGIIWVG  559 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCC-EEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECT--TSCEEEE
T ss_pred             ccccccccccCCceEEEEEECCCCC-EEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECC--CCCEEEE
Confidence            4321     1  2346788999987 888765  5688998764321 111   0 1122 2345688899  9999999


Q ss_pred             EecCCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEEec
Q 048181          262 AIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPF  306 (310)
Q Consensus       262 ~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~  306 (310)
                      ...          .+.++|++......+....|..-..|.++++.
T Consensus       560 T~~----------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d  594 (795)
T 4a2l_A          560 TRE----------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILED  594 (795)
T ss_dssp             ESS----------CEEEEETTTTEEEEECGGGTCSCSCEEEEEEC
T ss_pred             eCC----------CceeECCCCCcEEEeCCCCCCchhheEEEEEC
Confidence            875          38889988776777765555433456666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.10  E-value=2.6e-08  Score=100.48  Aligned_cols=222  Identities=11%  Similarity=0.087  Sum_probs=142.3

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ..++..|++|+ +|++...+.|.++++... ...+......       .   ....-.......++.| ++|+|||+...
T Consensus       315 v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~-------~---~~~~l~~~~v~~i~~d-~~g~lWigt~~  382 (781)
T 3v9f_A          315 ARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ-------M---NESSLSNKVVSSVCDD-GQGKLWIGTDG  382 (781)
T ss_dssp             EEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C-------C---CSSCCSSSCEEEEEEC-TTSCEEEEEBS
T ss_pred             EEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc-------c---ccCCCCCcceEEEEEc-CCCCEEEEeCC
Confidence            45788999998 677777778999988743 3333110000       0   0000112345678887 78999998766


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL  194 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~  194 (310)
                      .||.+++++++..+.+.. .....-.....++.|+ +|+||++...                  +.|+++++.+++.+..
T Consensus       383 ~Gl~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~d~-~g~lWigt~~------------------~Gl~~~~~~~~~~~~~  442 (781)
T 3v9f_A          383 GGINVFENGKRVAIYNKE-NRELLSNSVLCSLKDS-EGNLWFGTYL------------------GNISYYNTRLKKFQII  442 (781)
T ss_dssp             SCEEEEETTEEEEECC------CCCSBEEEEEECT-TSCEEEEETT------------------EEEEEECSSSCEEEEC
T ss_pred             CcEEEEECCCCeEEEccC-CCCCCCcceEEEEECC-CCCEEEEecc------------------CCEEEEcCCCCcEEEe
Confidence            789999988755443321 1111224466888898 5999997532                  4599999887777665


Q ss_pred             ecC---CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ec-----C-CCCCceeeeCCCCCCcEEEEEec
Q 048181          195 LRN---LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-IN-----F-QAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       195 ~~~---l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~-----l-~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ...   ......|+.+++|+ ||++-.  +.|++|+....   ..+. ..     + ......|+.|+  +|+||++...
T Consensus       443 ~~~~~~~~~v~~i~~d~~g~-lwigt~--~Gl~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~--~g~lWigt~~  514 (781)
T 3v9f_A          443 ELEKNELLDVRVFYEDKNKK-IWIGTH--AGVFVIDLASK---KVIHHYDTSNSQLLENFVRSIAQDS--EGRFWIGTFG  514 (781)
T ss_dssp             CSTTTCCCCEEEEEECTTSE-EEEEET--TEEEEEESSSS---SCCEEECTTTSSCSCSCEEEEEECT--TCCEEEEESS
T ss_pred             ccCCCCCCeEEEEEECCCCC-EEEEEC--CceEEEeCCCC---eEEecccCcccccccceeEEEEEcC--CCCEEEEEcC
Confidence            421   12446788888875 888765  67999987542   2221 11     1 13467799999  9999999875


Q ss_pred             CCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEEec
Q 048181          265 TRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPF  306 (310)
Q Consensus       265 ~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~  306 (310)
                      .         .+.+++++++....+..+.+..-..|..+.+.
T Consensus       515 ~---------Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d  547 (781)
T 3v9f_A          515 G---------GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRS  547 (781)
T ss_dssp             S---------CEEEECTTCCEEEEECTTTTCSCSCEEEEEEC
T ss_pred             C---------CEEEEeCCCCeEEEccCCCCCCCCeeEEEEEC
Confidence            4         48889998777777765554433467777663

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.10  E-value=2.3e-08  Score=88.84  Aligned_cols=159  Identities=9%  Similarity=-0.019  Sum_probs=100.1

Q ss_pred             CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEeCCC-cEEEEeCC
Q 048181           46 GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIADAYS-GLLVVGPN  123 (310)
Q Consensus        46 ~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad~~~-gi~~id~~  123 (310)
                      .++++...++.|..++...+...-...                .......|.+++++ ++| .+|+++... .|..+|..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVIT----------------IADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE----------------CTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEE----------------cCCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECC
Confidence            356777788999999987543221100                00001158899997 555 788887654 49999998


Q ss_pred             CCeEEEeecc-CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCc
Q 048181          124 GRLATQLATG-AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPA  202 (310)
Q Consensus       124 ~~~~~~~~~~-~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pn  202 (310)
                      +++....... ..+.....|.++++++++..+|+++.........+      ...++.|+.+|..+++.......-..|+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~------~~~~~~i~v~d~~~~~~~~~~~~~~~~~  138 (337)
T 1pby_B           65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF------EVQPTRVALYDAETLSRRKAFEAPRQIT  138 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE------EECCCEEEEEETTTTEEEEEEECCSSCC
T ss_pred             CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc------cccCceEEEEECCCCcEEEEEeCCCCcc
Confidence            7765332221 11111235789999996337888863210000000      0024789999998877655554455789


Q ss_pred             eeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          203 GVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       203 GIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      +++++|||++||++   .+.|+.+++..
T Consensus       139 ~~~~s~dg~~l~~~---~~~i~~~d~~~  163 (337)
T 1pby_B          139 MLAWARDGSKLYGL---GRDLHVMDPEA  163 (337)
T ss_dssp             CEEECTTSSCEEEE---SSSEEEEETTT
T ss_pred             eeEECCCCCEEEEe---CCeEEEEECCC
Confidence            99999999999998   47799998764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.09  E-value=8.8e-08  Score=93.44  Aligned_cols=199  Identities=8%  Similarity=0.035  Sum_probs=123.0

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECC-CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAP-DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      +.+++..   ..|+++++++||+.+|+...++.|..++.. .+.+.+..                  ......|.+++++
T Consensus       190 ~~~i~~g---~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~------------------i~~G~~P~~ia~s  248 (567)
T 1qks_A          190 KTVLDTG---YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE------------------IKIGSEARSIETS  248 (567)
T ss_dssp             EEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE------------------EECCSEEEEEEEC
T ss_pred             EEEEeCC---CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE------------------EecCCCCceeEEc
Confidence            3344444   368999999999988888888999999984 12221111                  1234579999997


Q ss_pred             c----CCCeEEEEeCC-CcEEEEeCCCCeEEEeecc----CCC---ccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181          103 Y----ATRQLYIADAY-SGLLVVGPNGRLATQLATG----AEG---QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK  170 (310)
Q Consensus       103 ~----~~g~LyVad~~-~gi~~id~~~~~~~~~~~~----~~g---~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~  170 (310)
                      +    ....+||++.. ..+..+|..+.+.......    .++   .+-..+..+..+++...+|++.            
T Consensus       249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~------------  316 (567)
T 1qks_A          249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV------------  316 (567)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE------------
T ss_pred             cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe------------
Confidence            2    44579998765 4588899887654322211    111   0111334566666423334432            


Q ss_pred             eeeecCCCceEEEEcCCCCe-EE-EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-eecC-CCCC-
Q 048181          171 LNITNDSTGRLLSYNPRSSQ-VT-VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-IINF-QAKP-  245 (310)
Q Consensus       171 ~~~~~~~~G~l~~~d~~~g~-~~-~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~~~l-~g~P-  245 (310)
                           ...|+|+.+|..+.+ .. ..+..-.+|.++.|+|||+++|++....++|..+|...   ++.. .... ...| 
T Consensus       317 -----~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t---~kl~~~i~vgg~~Ph  388 (567)
T 1qks_A          317 -----KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE---GKLVAIEDTGGQTPH  388 (567)
T ss_dssp             -----TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSSSSBC
T ss_pred             -----cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC---CcEEEEEeccCcCCC
Confidence                 335889888865432 11 11233457889999999999999999999999998863   3221 1222 1223 


Q ss_pred             --ceee-eCCCCC-CcEEEEEecC
Q 048181          246 --HNIK-RNPGLL-QTFWEAAIIT  265 (310)
Q Consensus       246 --dgl~-~d~~~d-G~l~va~~~~  265 (310)
                        .|.. +++  + |.+|++....
T Consensus       389 pg~g~~~~~p--~~g~v~~t~~~g  410 (567)
T 1qks_A          389 PGRGANFVHP--TFGPVWATSHMG  410 (567)
T ss_dssp             CTTCEEEEET--TTEEEEEEEBSS
T ss_pred             CccceeeECC--CCCcEEEeCCCC
Confidence              3665 466  5 6899876543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.09  E-value=1.6e-08  Score=93.42  Aligned_cols=214  Identities=11%  Similarity=-0.098  Sum_probs=128.7

Q ss_pred             CCEEEEEeCCC----eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC-------
Q 048181           45 GGAFYTGVADG----RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA-------  113 (310)
Q Consensus        45 G~l~~~d~~~g----~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~-------  113 (310)
                      ..+|+++...+    +|..||.+..... ..                  .+....| |+++++..+++||++.       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~-~~------------------i~vG~~P-~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTL-GH------------------SLGAFLS-LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEE-EE------------------EEECTTC-EEEECTTSSCEEEEEEEETTTTS
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEE-EE------------------EeCCCCC-ceEECCCCCEEEEEccccccccc
Confidence            35566665555    8889998854321 10                  1233468 9999866678999973       


Q ss_pred             ---CCcEEEEeCCCCeEEEeeccCCCcc---ccCccceEEeCCCCeEEEEcCC--Cc-----cCccceeEe---------
Q 048181          114 ---YSGLLVVGPNGRLATQLATGAEGQA---FHFLDGLDVDQGTGVVYFTDAS--GV-----YDFRTIVKL---------  171 (310)
Q Consensus       114 ---~~gi~~id~~~~~~~~~~~~~~g~~---~~~pndvavd~~~G~lyvtd~~--~~-----~~~~~~~~~---------  171 (310)
                         .+.|.+||+.+++...-.....++.   ...|.+++++|++..+||++..  ..     .+... ...         
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~  170 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHI  170 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEE
Confidence               1239999999876532221111111   2568999999975689999753  11     12211 000         


Q ss_pred             -------eeecCCCceEEEEcCCC-----CeE-----------------------------------------EEeec--
Q 048181          172 -------NITNDSTGRLLSYNPRS-----SQV-----------------------------------------TVLLR--  196 (310)
Q Consensus       172 -------~~~~~~~G~l~~~d~~~-----g~~-----------------------------------------~~~~~--  196 (310)
                             .....++|++..+|.++     +++                                         +....  
T Consensus       171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~  250 (368)
T 1mda_H          171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID  250 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCC
T ss_pred             ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEE
Confidence                   01122344444444433     111                                         11100  


Q ss_pred             --------CCCCCce---eEEccCCCEEEEEec---C-----CCeEEEEEecCCCCCceeeecC--CCCCceeeeCCCCC
Q 048181          197 --------NLTGPAG---VAISVDSSFLLVSEF---T-----GNRTLKYWLRGPRANSFDIINF--QAKPHNIKRNPGLL  255 (310)
Q Consensus       197 --------~l~~pnG---Ia~~~dg~~Lyv~d~---~-----~~~I~~~~~~~~~~g~~~~~~l--~g~Pdgl~~d~~~d  255 (310)
                              ....|.|   +++++||++|||+..   .     ...+..+|....   +. +..+  ...|+||++++  |
T Consensus       251 ~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~v-v~~i~vg~~p~gi~~s~--D  324 (368)
T 1mda_H          251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QT-SGPISNGHDSDAIIAAQ--D  324 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CE-EECCEEEEEECEEEECC--S
T ss_pred             eccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---eE-EEEEECCCCcceEEECC--C
Confidence                    0113556   999999999999865   3     345668887532   11 1222  34699999999  9


Q ss_pred             Cc-EEEEEe-cCCCCCCCCceeeEEECC-CCcEEEEEecCC
Q 048181          256 QT-FWEAAI-ITRQPAGTPVPIGQRISA-FGAVLDTISFEA  293 (310)
Q Consensus       256 G~-l~va~~-~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~  293 (310)
                      |. +|++.. ..+        .|..+|. .++++..+....
T Consensus       325 g~~l~va~~~~~~--------~VsVID~~t~kvv~~I~vg~  357 (368)
T 1mda_H          325 GASDNYANSAGTE--------VLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             SSCEEEEEETTTT--------EEEEEESSSCEEEEECCCCS
T ss_pred             CCEEEEEccCCCC--------eEEEEECCCCcEEEEEECCC
Confidence            96 899988 443        7888895 699999987653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.08  E-value=4.5e-08  Score=98.88  Aligned_cols=205  Identities=9%  Similarity=0.081  Sum_probs=134.8

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ...+++.|++|+++|++...+.|+++++.++ ...+....               ..........++.| ++|+||++..
T Consensus       407 ~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~---------------~~l~~~~v~~i~~d-~~g~lwigt~  470 (795)
T 4a2l_A          407 NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN---------------SQLVNENVYAILPD-GEGNLWLGTL  470 (795)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT---------------SCCSCSCEEEEEEC-SSSCEEEEES
T ss_pred             cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC---------------CCcCCCeeEEEEEC-CCCCEEEEec
Confidence            3557888989985677777788999998754 33332100               00112345678887 7899999876


Q ss_pred             CCcEEEEeCCCCeEEEeeccC--CCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          114 YSGLLVVGPNGRLATQLATGA--EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~--~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                       .||+++++++++.+.+....  .+..-...+.+..|+ +|++|++..                   +.|+++|+++++.
T Consensus       471 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~-------------------~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          471 -SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGGE-------------------EGLSVFKQEGLDI  529 (795)
T ss_dssp             -SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEES-------------------SCEEEEEEETTEE
T ss_pred             -CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEEEeC-------------------CceEEEeCCCCeE
Confidence             68999999988766553221  111224567889998 599999864                   2377777766655


Q ss_pred             EEee-----cCC--CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee----ecCCC-CCceeeeCCCCCCcEE
Q 048181          192 TVLL-----RNL--TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI----INFQA-KPHNIKRNPGLLQTFW  259 (310)
Q Consensus       192 ~~~~-----~~l--~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~----~~l~g-~Pdgl~~d~~~dG~l~  259 (310)
                       ...     ..+  ...+.|+.+++|+ ||++-..  .|++|+...   +..+.    .+++. ...+|..|+  +|+||
T Consensus       530 -~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~--Gl~~~d~~~---~~~~~~~~~~gl~~~~i~~i~~d~--~g~lW  600 (795)
T 4a2l_A          530 -QKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE--GFYCFNEKD---KQIKRYNTTNGLPNNVVYGILEDS--FGRLW  600 (795)
T ss_dssp             -EECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS--CEEEEETTT---TEEEEECGGGTCSCSCEEEEEECT--TSCEE
T ss_pred             -EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC--CceeECCCC---CcEEEeCCCCCCchhheEEEEECC--CCCEE
Confidence             221     112  2346788899987 8887553  688898653   33322    23331 234588999  99999


Q ss_pred             EEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCc
Q 048181          260 EAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQY  295 (310)
Q Consensus       260 va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~  295 (310)
                      ++...          .+.+++|+.+....+....|.
T Consensus       601 i~t~~----------Gl~~~~~~~~~~~~~~~~dGl  626 (795)
T 4a2l_A          601 LSTNR----------GISCFNPETEKFRNFTESDGL  626 (795)
T ss_dssp             EEETT----------EEEEEETTTTEEEEECGGGTC
T ss_pred             EEcCC----------ceEEEcCCCCcEEEcCCcCCC
Confidence            99853          588999987777777766554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.08  E-value=9.1e-09  Score=92.04  Aligned_cols=160  Identities=12%  Similarity=0.029  Sum_probs=109.1

Q ss_pred             eEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEeeeec
Q 048181           98 GLALHYATRQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      |+++. .++++|++.... .|..+|.++++....... .  ....|.+++++++ | .+|+++..               
T Consensus         4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~--~~~~~~~~~~s~d-g~~~~v~~~~---------------   63 (349)
T 1jmx_B            4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-P--DKFGPGTAMMAPD-NRTAYVLNNH---------------   63 (349)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEEC-S--SCCSSCEEEECTT-SSEEEEEETT---------------
T ss_pred             ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEec-C--CCCCCceeEECCC-CCEEEEEeCC---------------
Confidence            55664 678899886554 499999988765432221 1  1124789999995 6 58888643               


Q ss_pred             CCCceEEEEcCCCCeEEEeecC-------CCCCceeEEccCCCEEEEEecC-----------CCeEEEEEecCCCCCc-e
Q 048181          176 DSTGRLLSYNPRSSQVTVLLRN-------LTGPAGVAISVDSSFLLVSEFT-----------GNRTLKYWLRGPRANS-F  236 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~~~-------l~~pnGIa~~~dg~~Lyv~d~~-----------~~~I~~~~~~~~~~g~-~  236 (310)
                        ++.|+.+|..+++.......       ...|++++++|||++||++...           .++|+.+++....... .
T Consensus        64 --~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  141 (349)
T 1jmx_B           64 --YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  141 (349)
T ss_dssp             --TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             --CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence              36899999887776543332       2238999999999999998854           6799999986421111 1


Q ss_pred             eeecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          237 DIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       237 ~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                      .....+..+.++++++  ||++|++  ..         .+.++|. +|+++..+...
T Consensus       142 ~~~~~~~~~~~~~~s~--dg~l~~~--~~---------~i~~~d~~~~~~~~~~~~~  185 (349)
T 1jmx_B          142 RTFPMPRQVYLMRAAD--DGSLYVA--GP---------DIYKMDVKTGKYTVALPLR  185 (349)
T ss_dssp             EEEECCSSCCCEEECT--TSCEEEE--SS---------SEEEECTTTCCEEEEECST
T ss_pred             eeccCCCcccceeECC--CCcEEEc--cC---------cEEEEeCCCCceecccccc
Confidence            1123344578888999  9998884  21         4788886 58888777654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.02  E-value=4e-08  Score=92.43  Aligned_cols=199  Identities=11%  Similarity=0.008  Sum_probs=108.4

Q ss_pred             cCCCEEEE-EeCC----CeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC----
Q 048181           43 PVGGAFYT-GVAD----GRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA----  113 (310)
Q Consensus        43 ~~G~l~~~-d~~~----g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~----  113 (310)
                      ++++.+|+ +...    +.|..||.+..... ..                  .+....| |++++++..+|||++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-~~------------------I~vG~~P-gia~SpDgk~lyVan~~~~~  141 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-GM------------------TDGGFLP-HPVAAEDGSFFAQASTVFER  141 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-EE------------------EEECSSC-EEEECTTSSCEEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-EE------------------EECCCCC-ceEECCCCCEEEEEeccccc
Confidence            35554444 4432    69999998854322 10                  1233468 9999866667999984    


Q ss_pred             ------CCcEEEEeCCCCeEEEeeccCCCcc---ccCccceEEeCCCCeEEEEcCC-Cc----cCccc--eeEe------
Q 048181          114 ------YSGLLVVGPNGRLATQLATGAEGQA---FHFLDGLDVDQGTGVVYFTDAS-GV----YDFRT--IVKL------  171 (310)
Q Consensus       114 ------~~gi~~id~~~~~~~~~~~~~~g~~---~~~pndvavd~~~G~lyvtd~~-~~----~~~~~--~~~~------  171 (310)
                            .+.|.+||..++++..-......+.   ...|.++++++++.++||++.. ..    ++...  ....      
T Consensus       142 ~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~  221 (426)
T 3c75_H          142 IARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC  221 (426)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             cccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc
Confidence                  2249999999876532211110111   2568999999976689998753 11    00000  0000      


Q ss_pred             ----------eeecCCCceEEEEcCCCCeEEEe----ecCCCCC--ceeEEccCCCEEEEEecCCCeEEEEEecCCCCC-
Q 048181          172 ----------NITNDSTGRLLSYNPRSSQVTVL----LRNLTGP--AGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN-  234 (310)
Q Consensus       172 ----------~~~~~~~G~l~~~d~~~g~~~~~----~~~l~~p--nGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g-  234 (310)
                                .+...++|++..++..++++...    .+--..|  ..++++++++.+|++.. .++|+.++..+.... 
T Consensus       222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v  300 (426)
T 3c75_H          222 YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATF  300 (426)
T ss_dssp             EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEE
T ss_pred             eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEE
Confidence                      01223456666666544444321    1111122  34566888777777643 567888887542110 


Q ss_pred             --ceeee---cC--CCCCce---eeeCCCCCC-cEEEEEec
Q 048181          235 --SFDII---NF--QAKPHN---IKRNPGLLQ-TFWEAAII  264 (310)
Q Consensus       235 --~~~~~---~l--~g~Pdg---l~~d~~~dG-~l~va~~~  264 (310)
                        ..++.   .+  ...|.|   +++++  +| .+||+...
T Consensus       301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~--dg~rlyVa~~~  339 (426)
T 3c75_H          301 RAPIEALTEAERADDWRPGGWQQTAYHR--QSDRIYLLVDQ  339 (426)
T ss_dssp             CCCEESSCTTTGGGTEEECSSSCEEEEG--GGTEEEEEEEE
T ss_pred             eeeeeeccccccccccccCCceeeEEcC--CCCEEEEEecc
Confidence              01100   00  012444   89998  76 68999763

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.01  E-value=2.8e-07  Score=84.54  Aligned_cols=223  Identities=12%  Similarity=0.037  Sum_probs=128.4

Q ss_pred             CCcceEEEccCCCEEEEEe----------CCCeEEEEECCCc-e-EEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           34 FGGESIAFEPVGGAFYTGV----------ADGRILKYQAPDG-F-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~----------~~g~I~r~~~~g~-~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      ..| ++++++||+.+|+..          .++.|..++.... . ..+.....              .......|.++++
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~--------------~~~~g~~p~~i~~  115 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK--------------RVQGLNYDGLFRQ  115 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT--------------BCCBCCCGGGEEE
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc--------------ccccCCCcceEEE
Confidence            368 999999998777765          2456889987642 2 12211000              0012357999999


Q ss_pred             ecCCCeEEEEeCC--CcEEEEeCCCCeEEEe-eccCCCc--cccCccc----eEEeCCCCeEE-EEcCC-Cc--------
Q 048181          102 HYATRQLYIADAY--SGLLVVGPNGRLATQL-ATGAEGQ--AFHFLDG----LDVDQGTGVVY-FTDAS-GV--------  162 (310)
Q Consensus       102 d~~~g~LyVad~~--~gi~~id~~~~~~~~~-~~~~~g~--~~~~pnd----vavd~~~G~ly-vtd~~-~~--------  162 (310)
                      ++....||+++..  ..|..+|.++++.... .. ..+.  ...+|++    ++++++ |.+. ++-.. ..        
T Consensus       116 spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~~~~v~~~p~~~~~~~~~~~d-g~~~~v~~~~~g~~~~~~~~~  193 (361)
T 2oiz_A          116 TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAGCWSVIPQPNRPRSFMTICGD-GGLLTINLGEDGKVASQSRSK  193 (361)
T ss_dssp             CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTTEEEEEECTTSSSEEEEEETT-SSEEEEEECTTSSEEEEEECC
T ss_pred             CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCCcceeEEcCCCCeeEEEECCC-CcEEEEEECCCCcEeeecccc
Confidence            8555579999754  3599999988764322 11 1111  1124444    677774 6544 33211 11        


Q ss_pred             --cCccc-ee--------EeeeecCCCceEEEEcCCCCeEEEeec----------CCCCCce---eEEccCCCEEEEEec
Q 048181          163 --YDFRT-IV--------KLNITNDSTGRLLSYNPRSSQVTVLLR----------NLTGPAG---VAISVDSSFLLVSEF  218 (310)
Q Consensus       163 --~~~~~-~~--------~~~~~~~~~G~l~~~d~~~g~~~~~~~----------~l~~pnG---Ia~~~dg~~Lyv~d~  218 (310)
                        +.... ..        .........|+++.+|..++..+....          ....|.|   +++++|++++||+..
T Consensus       194 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~  273 (361)
T 2oiz_A          194 QMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH  273 (361)
T ss_dssp             CCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred             ceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence              00000 00        001112235678888865443332210          0012455   999999999999865


Q ss_pred             ----------CCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECC-CC--
Q 048181          219 ----------TGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISA-FG--  283 (310)
Q Consensus       219 ----------~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~-~G--  283 (310)
                                ..++|+.+++..   ++..- ..... |.+|++++  ||+ ||++.. .         .|..+|. .|  
T Consensus       274 ~~~~~~~~~~~~~~v~viD~~t---~~~v~~i~~~~-p~~ia~sp--dg~~l~v~n~-~---------~v~v~D~~t~~l  337 (361)
T 2oiz_A          274 PDGKEGTHKFPAAEIWVMDTKT---KQRVARIPGRD-ALSMTIDQ--QRNLMLTLDG-G---------NVNVYDISQPEP  337 (361)
T ss_dssp             SSCCTTCTTCCCSEEEEEETTT---TEEEEEEECTT-CCEEEEET--TTTEEEEECS-S---------CEEEEECSSSSC
T ss_pred             cCCCcccccCCCceEEEEECCC---CcEEEEEecCC-eeEEEECC--CCCEEEEeCC-C---------eEEEEECCCCcc
Confidence                      245899999753   22211 33345 99999999  996 676664 2         5888885 58  


Q ss_pred             cEEEEE
Q 048181          284 AVLDTI  289 (310)
Q Consensus       284 ~~~~~~  289 (310)
                      +++..+
T Consensus       338 ~~~~~i  343 (361)
T 2oiz_A          338 KLLRTI  343 (361)
T ss_dssp             EEEEEE
T ss_pred             eeeEEe
Confidence            888776

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.99  E-value=2.7e-07  Score=85.19  Aligned_cols=190  Identities=8%  Similarity=0.047  Sum_probs=115.1

Q ss_pred             CCCceeeEEEecCCCeEEEEeCC-------------C---cEEEEeCCCC--eEE-Ee--eccCCCccccCccceEEe-C
Q 048181           92 ICRRTFGLALHYATRQLYIADAY-------------S---GLLVVGPNGR--LAT-QL--ATGAEGQAFHFLDGLDVD-Q  149 (310)
Q Consensus        92 ~~~~P~Gla~d~~~g~LyVad~~-------------~---gi~~id~~~~--~~~-~~--~~~~~g~~~~~pndvavd-~  149 (310)
                      ..-...++.+| ..|+|||.|.+             .   .|+.+|++++  ++. ++  ..... .+-.+.||++|| .
T Consensus        85 ~lvsV~~v~iD-~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~-~~~S~l~di~VD~~  162 (381)
T 3q6k_A           85 ELTSIYQPVID-DCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLV-EKPTYFGGFAVDVA  162 (381)
T ss_dssp             SSSCEEEEEEC-TTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGC-CCGGGEEEEEEEES
T ss_pred             ceEEeeEEEEc-CCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhc-ccCCccceEEEecc
Confidence            34567899998 79999999964             1   2889999987  543 22  11111 234678999999 2


Q ss_pred             C------CCeEEEEcCCCccCccceeEeeeecCCCceEEEEc-----CCCCeEEEeecC-----CCCCceeEEccC----
Q 048181          150 G------TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN-----PRSSQVTVLLRN-----LTGPAGVAISVD----  209 (310)
Q Consensus       150 ~------~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d-----~~~g~~~~~~~~-----l~~pnGIa~~~d----  209 (310)
                      +      ++.+|+||....   .-.+    -...+|+-+|+-     ++ ........+     ....+|||+||+    
T Consensus       163 ~~~~~c~~~~aYItD~~~~---gLIV----ydl~~~~swRv~~~~~~pd-~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~  234 (381)
T 3q6k_A          163 NPKGDCSETFVYITNFLRG---ALFI----YDHKKQDSWNVTHPTFKAE-RPTKFDYGGKEYEFKAGIFGITLGDRDSEG  234 (381)
T ss_dssp             CTTTTSCSEEEEEEETTTT---EEEE----EETTTTEEEEEECGGGSCC-SCEEEEETTEEEEECCCEEEEEECCCCTTS
T ss_pred             cCCCCCCccEEEEEcCCCC---cEEE----EECCCCcEEEEccCCCccc-cCcceEECCEEeEeccCceEEEecCCcCCC
Confidence            1      488999998531   0000    111233334432     11 001111111     135689999998    


Q ss_pred             CCEEEEEecCCCeEEEEEec---CCC-CCceeeecCCC-CCc--eeeeC-CCCCCcEEEEEecCCCCCCCCceeeEEECC
Q 048181          210 SSFLLVSEFTGNRTLKYWLR---GPR-ANSFDIINFQA-KPH--NIKRN-PGLLQTFWEAAIITRQPAGTPVPIGQRISA  281 (310)
Q Consensus       210 g~~Lyv~d~~~~~I~~~~~~---~~~-~g~~~~~~l~g-~Pd--gl~~d-~~~dG~l~va~~~~~~~~~~~~~~v~~~~~  281 (310)
                      +++||+.-..+.+++++..+   .+. ...++..+-.+ ..+  ++++| .  +|+||.+.....        .|.++++
T Consensus       235 ~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~--~G~ly~~~~~~~--------aI~~w~~  304 (381)
T 3q6k_A          235 NRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPK--TKVIFFAEANTK--------QVSCWNT  304 (381)
T ss_dssp             CCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTT--TCEEEEEESSSS--------EEEEEET
T ss_pred             CeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCC--CCeEEEEeccCC--------eEEEEeC
Confidence            89999999999999999842   211 11222211112 245  46786 7  899999998764        7889998


Q ss_pred             CC------cEEEEEecCCCccccceeEEE
Q 048181          282 FG------AVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       282 ~G------~~~~~~~~p~~~~~~~~t~~~  304 (310)
                      ++      +....++.| ..  .-++++.
T Consensus       305 ~~~~~~~~n~~~l~~d~-~l--~~pd~~~  330 (381)
T 3q6k_A          305 QKMPLRMKNTDVVYTSS-RF--VFGTDIS  330 (381)
T ss_dssp             TSCSBCGGGEEEEEECT-TC--CSEEEEE
T ss_pred             CCCccccCceEEEEECC-Cc--cccCeEE
Confidence            87      335555665 32  3444444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.98  E-value=6.9e-08  Score=93.57  Aligned_cols=198  Identities=12%  Similarity=0.062  Sum_probs=125.4

Q ss_pred             CCC-EEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEe--cCCCeEEEEeC------
Q 048181           44 VGG-AFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH--YATRQLYIADA------  113 (310)
Q Consensus        44 ~G~-l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d--~~~g~LyVad~------  113 (310)
                      ||+ +|+.+..+++|.+++.+.... .+.                  ..+....|.|+++.  ++.+.+|++..      
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii------------------~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~  161 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAIL------------------EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLV  161 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEE------------------ECSSCCSEEEEEECCSSBCSEEEEEECSCEESS
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEE------------------eCCCCCCCcceeeeecCCCcEEEEecccccccC
Confidence            665 555566789999999985321 111                  02345679999983  45788998841      


Q ss_pred             -----------CC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccC---------ccceeEee
Q 048181          114 -----------YS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYD---------FRTIVKLN  172 (310)
Q Consensus       114 -----------~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~---------~~~~~~~~  172 (310)
                                 .. .+..||.++.++..-.. ..+    .|.+++++++++.+|+|.......         ..++..-.
T Consensus       162 ~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~-Vgg----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~  236 (595)
T 1fwx_A          162 NDGTNMEDVANYVNVFTAVDADKWEVAWQVL-VSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF  236 (595)
T ss_dssp             CSSSSTTCGGGEEEEEEEEETTTTEEEEEEE-ESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred             CCCcccccccccCceEEEEECCCCeEEEEEE-eCC----CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEe
Confidence                       11 27788988765421111 122    478999999877888887543110         00110000


Q ss_pred             -----eecCC------CceEEEEcCCC--CeE-EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC---CCc
Q 048181          173 -----ITNDS------TGRLLSYNPRS--SQV-TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR---ANS  235 (310)
Q Consensus       173 -----~~~~~------~G~l~~~d~~~--g~~-~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~---~g~  235 (310)
                           .+..+      -+.+..+|..+  +++ ...+.--..|.|+.++|||+++||++...++|.+|+++..+   .+.
T Consensus       237 ~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~  316 (595)
T 1fwx_A          237 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN  316 (595)
T ss_dssp             EHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred             eccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc
Confidence                 00000      14588899876  433 22233335899999999999999999999999999987311   011


Q ss_pred             e----ee-ecCC--CCCceeeeCCCCCCcEEEEEecCC
Q 048181          236 F----DI-INFQ--AKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       236 ~----~~-~~l~--g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      .    .+ ..++  ..|.++++++  +|++|++.....
T Consensus       317 l~~~~~v~~~v~vG~gP~h~aF~~--dG~aY~t~~lds  352 (595)
T 1fwx_A          317 ADPRSAVVAEPELGLGPLHTAFDG--RGNAYTSLFLDS  352 (595)
T ss_dssp             CCGGGGEEECCBCCSCEEEEEECT--TSEEEEEETTTT
T ss_pred             cCcccceEEEcCCCCCcceEEECC--CCeEEEEEecCC
Confidence            1    11 2222  3699999999  999999998763

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.97  E-value=5.5e-09  Score=100.42  Aligned_cols=124  Identities=16%  Similarity=0.205  Sum_probs=86.3

Q ss_pred             CCCCceeeEEEecCCCeEEEEeCC---------------------Cc-EEEEeCCCCe-------EEEeec--cC-----
Q 048181           91 PICRRTFGLALHYATRQLYIADAY---------------------SG-LLVVGPNGRL-------ATQLAT--GA-----  134 (310)
Q Consensus        91 ~~~~~P~Gla~d~~~g~LyVad~~---------------------~g-i~~id~~~~~-------~~~~~~--~~-----  134 (310)
                      ....+|-++++++.+|++|++-..                     .| |+++.++++.       ...++.  ..     
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            345689999998779999998431                     13 8888764321       122221  10     


Q ss_pred             ----------CCccccCccceEEeCCCCeEEE-EcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecC--CCCC
Q 048181          135 ----------EGQAFHFLDGLDVDQGTGVVYF-TDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRN--LTGP  201 (310)
Q Consensus       135 ----------~g~~~~~pndvavd~~~G~lyv-td~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~--l~~p  201 (310)
                                .+.+|+.||+|++|+ +|+||| ||...... ..     .+...+..+|++++.+|+++.++..  ...|
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~-g~-----~~~~gnn~v~~~dp~tGel~~fl~~P~~aEp  533 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNA-GD-----FAGMGNNQMLCADPATGEIRRFMVGPIGCEV  533 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCS-GG-----GTTCCSCEEEEECTTTCCEEEEEECCTTCEE
T ss_pred             ccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCcc-cc-----ccccCCceEEEEeCCCCeEEEEEeCCCCccc
Confidence                      124689999999999 599999 99753210 00     1122345899999998999888754  3568


Q ss_pred             ceeEEccCCCEEEEEecCCC
Q 048181          202 AGVAISVDSSFLLVSEFTGN  221 (310)
Q Consensus       202 nGIa~~~dg~~Lyv~d~~~~  221 (310)
                      |||+|+||+++|||+-...+
T Consensus       534 nGiafSPD~ktLfV~vQHPG  553 (592)
T 4a9v_A          534 TGISFSPDQKTLFVGIQHPG  553 (592)
T ss_dssp             EEEEECTTSSEEEEEEESTT
T ss_pred             cCCEECCCCCEEEEEEeCCC
Confidence            99999999999999876443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.96  E-value=1.1e-07  Score=92.77  Aligned_cols=203  Identities=9%  Similarity=-0.091  Sum_probs=132.5

Q ss_pred             cceEEEccC--CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           36 GESIAFEPV--GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        36 Pegia~d~~--G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      |..+.+..|  +.+|++...+++|..++.+.+...-.                   .+....|+++++++....+||++.
T Consensus       156 P~~~~~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~-------------------i~~g~~p~~v~~SpDGr~lyv~~~  216 (567)
T 1qks_A          156 PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTGYAVHISRLSASGRYLFVIGR  216 (567)
T ss_dssp             CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEE-------------------EECSSCEEEEEECTTSCEEEEEET
T ss_pred             ccccccccCCCceEEEEeCCCCeEEEEECCCCeEEEE-------------------EeCCCCccceEECCCCCEEEEEcC
Confidence            444444433  45555666789999999885432110                   023347889999854556899886


Q ss_pred             CCcEEEEeCC--CCeEEEeeccCCCccccCccceEEe----CCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          114 YSGLLVVGPN--GRLATQLATGAEGQAFHFLDGLDVD----QGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       114 ~~gi~~id~~--~~~~~~~~~~~~g~~~~~pndvavd----~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      ...|..||..  +++..  .....|   ..|.+++++    |++..+|+++..                 .+.+..+|..
T Consensus       217 dg~V~viD~~~~t~~~v--~~i~~G---~~P~~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~~  274 (567)
T 1qks_A          217 DGKVNMIDLWMKEPTTV--AEIKIG---SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGE  274 (567)
T ss_dssp             TSEEEEEETTSSSCCEE--EEEECC---SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETT
T ss_pred             CCeEEEEECCCCCCcEe--EEEecC---CCCceeEEccccCCCCCEEEEEEcc-----------------CCeEEEEECC
Confidence            6569999985  54332  111112   247899999    664589998743                 2678888887


Q ss_pred             CCeEEEeec--C----------CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCC
Q 048181          188 SSQVTVLLR--N----------LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPG  253 (310)
Q Consensus       188 ~g~~~~~~~--~----------l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~  253 (310)
                      +.++.....  +          -....+|..++++..++++....++|+.+++...+  ...+  ......|.++.+++ 
T Consensus       275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i~~~~~~~d~~~~p-  351 (567)
T 1qks_A          275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEISAERFLHDGGLDG-  351 (567)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEEECCSSEEEEEECT-
T ss_pred             CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc--cceeeeeeccccccCceECC-
Confidence            766543322  1          11345899999988888888899999999986431  2222  22234688999999 


Q ss_pred             CCCc-EEEEEecCCCCCCCCceeeEEECC-CCcEEEEEec
Q 048181          254 LLQT-FWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       254 ~dG~-l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                       +|+ +|+++....        .|..+|. .|+++..+..
T Consensus       352 -dgr~~~va~~~sn--------~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          352 -SHRYFITAANARN--------KLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             -TSCEEEEEEGGGT--------EEEEEETTTTEEEEEEEC
T ss_pred             -CCCEEEEEeCCCC--------eEEEEECCCCcEEEEEec
Confidence             996 577776543        5666774 5777777765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.94  E-value=8.7e-08  Score=85.34  Aligned_cols=150  Identities=10%  Similarity=0.049  Sum_probs=101.5

Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181           99 LALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus        99 la~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      .+++  +++||++....+|+++|++ ++...... ...   .....+++++ +|++|++..                  +
T Consensus       103 ~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~---~~~~~~~~~~-~g~l~vgt~------------------~  156 (330)
T 3hxj_A          103 FTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK-TKK---AIYATPIVSE-DGTIYVGSN------------------D  156 (330)
T ss_dssp             EEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-CSS---CCCSCCEECT-TSCEEEECT------------------T
T ss_pred             ceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCC---ceeeeeEEcC-CCEEEEEcC------------------C
Confidence            4553  8999998766779999998 44322111 111   2345678888 599999753                  2


Q ss_pred             ceEEEEcCCCCeEEE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecC-CCCCceeeeCCCCC
Q 048181          179 GRLLSYNPRSSQVTV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF-QAKPHNIKRNPGLL  255 (310)
Q Consensus       179 G~l~~~d~~~g~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l-~g~Pdgl~~d~~~d  255 (310)
                      +.|+++|++ ++... ..........++++++|+ ||++.   +.|++++.+    +.... ... ......+++|+  +
T Consensus       157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---~~l~~~d~~----g~~~~~~~~~~~~~~~~~~~~--~  225 (330)
T 3hxj_A          157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---DKVYAINPD----GTEKWNFYAGYWTVTRPAISE--D  225 (330)
T ss_dssp             SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES---SSEEEECTT----SCEEEEECCSSCCCSCCEECT--T
T ss_pred             CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---CEEEEECCC----CcEEEEEccCCcceeceEECC--C
Confidence            578999987 65432 222233457788988886 88876   788888733    22211 111 13467789999  9


Q ss_pred             CcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          256 QTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       256 G~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      |+||++....         .+.+++++|+.+..+..+.+
T Consensus       226 g~l~v~t~~~---------gl~~~~~~g~~~~~~~~~~~  255 (330)
T 3hxj_A          226 GTIYVTSLDG---------HLYAINPDGTEKWRFKTGKR  255 (330)
T ss_dssp             SCEEEEETTT---------EEEEECTTSCEEEEEECSSC
T ss_pred             CeEEEEcCCC---------eEEEECCCCCEeEEeeCCCC
Confidence            9999998754         68899999999888776644

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.92  E-value=1.4e-06  Score=81.34  Aligned_cols=206  Identities=13%  Similarity=0.039  Sum_probs=130.0

Q ss_pred             CcceEEEccCCCEEEEEeCC---CeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EE
Q 048181           35 GGESIAFEPVGGAFYTGVAD---GRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LY  109 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~---g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-Ly  109 (310)
                      ...+++|.|+|+.++....+   ..|+.++..++. ..+.                    ........+++. ++|+ |+
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~--------------------~~~~~~~~~~~s-pdg~~la  238 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------------SFPRHNGAPAFS-PDGSKLA  238 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE--------------------CCSSCEEEEEEC-TTSSEEE
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee--------------------cCCCcccCEEEc-CCCCEEE
Confidence            45679999999744444333   489889887543 2221                    112345678997 5665 55


Q ss_pred             EEeCC---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181          110 IADAY---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       110 Vad~~---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                      ++...   ..|+.+|.++++...+... .    .....++++|+ |+ |+++....               ...+|+.+|
T Consensus       239 ~~~~~~g~~~i~~~d~~~~~~~~l~~~-~----~~~~~~~~spd-g~~l~~~s~~~---------------g~~~i~~~d  297 (415)
T 2hqs_A          239 FALSKTGSLNLYVMDLASGQIRQVTDG-R----SNNTEPTWFPD-SQNLAFTSDQA---------------GRPQVYKVN  297 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCC-S----SCEEEEEECTT-SSEEEEEECTT---------------SSCEEEEEE
T ss_pred             EEEecCCCceEEEEECCCCCEEeCcCC-C----CcccceEECCC-CCEEEEEECCC---------------CCcEEEEEE
Confidence            44332   2499999988776554321 1    23467899995 65 66553211               124799999


Q ss_pred             CCCCeEEEeecCCCCCceeEEccCCCEEEEEecC--CCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcE-EEE
Q 048181          186 PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT--GNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTF-WEA  261 (310)
Q Consensus       186 ~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~--~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l-~va  261 (310)
                      ..+++.+.+.........++|+|||++|+++...  ...|+.+++++   +.... ... .....+++.+  ||+. +.+
T Consensus       298 ~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~---~~~~~l~~~-~~~~~~~~sp--dg~~l~~~  371 (415)
T 2hqs_A          298 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGVQVLSST-FLDETPSLAP--NGTMVIYS  371 (415)
T ss_dssp             TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---CCEEECCCS-SSCEEEEECT--TSSEEEEE
T ss_pred             CCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC---CCEEEecCC-CCcCCeEEcC--CCCEEEEE
Confidence            8877765554433455689999999988887654  35788888864   22222 111 2467889999  9974 444


Q ss_pred             EecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          262 AIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       262 ~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      .....      ...+..+|.+|+....+....+
T Consensus       372 s~~~~------~~~l~~~d~~g~~~~~l~~~~~  398 (415)
T 2hqs_A          372 SSQGM------GSVLNLVSTDGRFKARLPATDG  398 (415)
T ss_dssp             EEETT------EEEEEEEETTSCCEEECCCSSS
T ss_pred             EcCCC------ccEEEEEECCCCcEEEeeCCCC
Confidence            43321      1368888988888877766554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.91  E-value=2.7e-07  Score=84.59  Aligned_cols=98  Identities=8%  Similarity=0.103  Sum_probs=67.8

Q ss_pred             ceEEeCCCCeEEEEcC-CCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCe
Q 048181          144 GLDVDQGTGVVYFTDA-SGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNR  222 (310)
Q Consensus       144 dvavd~~~G~lyvtd~-~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~  222 (310)
                      .++++++++++|++.. ......        ...+.+.|+.+|..++++...+..-. |.+|+|+|||++||++..  +.
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~~--------~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~  326 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEGT--------HKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GN  326 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTTC--------TTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SC
T ss_pred             EEEEecCCCeEEEEEccCCCccc--------ccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--Ce
Confidence            3899997689999864 110000        01124589999998887655444334 999999999999999874  89


Q ss_pred             EEEEEecCCCCCceee-e---cCCCCCceeeeCCCCCCc
Q 048181          223 TLKYWLRGPRANSFDI-I---NFQAKPHNIKRNPGLLQT  257 (310)
Q Consensus       223 I~~~~~~~~~~g~~~~-~---~l~g~Pdgl~~d~~~dG~  257 (310)
                      |..|+...   +..++ .   .....|.++++++  +|+
T Consensus       327 v~v~D~~t---~~l~~~~~i~~~G~~P~~~~~~p--~G~  360 (361)
T 2oiz_A          327 VNVYDISQ---PEPKLLRTIEGAAEASLQVQFHP--VGG  360 (361)
T ss_dssp             EEEEECSS---SSCEEEEEETTSCSSEEEEEECC--CSC
T ss_pred             EEEEECCC---CcceeeEEeccCCCCcEEEEecC--CCC
Confidence            99998753   42233 2   3335799999999  884

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.91  E-value=5.1e-07  Score=83.40  Aligned_cols=207  Identities=9%  Similarity=-0.038  Sum_probs=111.6

Q ss_pred             CCcceEEEccCCCEEEEEeC--CCeEEEEECCCceE--E-eeeec--------CCCCccccCCCccccCCC---------
Q 048181           34 FGGESIAFEPVGGAFYTGVA--DGRILKYQAPDGFT--D-FAFTT--------PTRSKAVCDGTTNLDLGP---------   91 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~--~g~I~r~~~~g~~~--~-~~~~~--------~~~~~~~~~g~~~~~~~~---------   91 (310)
                      ..|++++++|||+.+|+...  ++.|..++ +++..  . +...+        +..+...|..+....+..         
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~  203 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL  203 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEe
Confidence            46999999999987777653  57899999 75422  2 21100        000011111110000000         


Q ss_pred             -----CCCcee--eEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCC------CccccCccc---eEEeCCCCeEE
Q 048181           92 -----ICRRTF--GLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAE------GQAFHFLDG---LDVDQGTGVVY  155 (310)
Q Consensus        92 -----~~~~P~--Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~------g~~~~~pnd---vavd~~~G~ly  155 (310)
                           ....|.  ...+...++++|+......++.+|..++..+.+. ..+      ......|.+   ++++++++++|
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~-~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA-PIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEee-eeeecCCcccccceecCceEeEEECCCCCEEE
Confidence                 011111  1122222345444433334777777654322211 110      011123555   88898778899


Q ss_pred             EEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCC-EEEEEecCCCeEEEEEecCCCCC
Q 048181          156 FTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSS-FLLVSEFTGNRTLKYWLRGPRAN  234 (310)
Q Consensus       156 vtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~-~Lyv~d~~~~~I~~~~~~~~~~g  234 (310)
                      ++........        ...+.+.|+.+|..++++..-+..-..|.+|+++|||+ .||++....+.|..||....+  
T Consensus       283 V~~~~~~~~~--------~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~--  352 (373)
T 2mad_H          283 LLTSEQSAWK--------LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD--  352 (373)
T ss_pred             EEeccCCccc--------ccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC--
Confidence            9764210000        01134689999999887754444334699999999999 788888788999999986421  


Q ss_pred             ceee-ecCCCCCceeeeCC
Q 048181          235 SFDI-INFQAKPHNIKRNP  252 (310)
Q Consensus       235 ~~~~-~~l~g~Pdgl~~d~  252 (310)
                      .... ......|.+|..-.
T Consensus       353 vv~~i~~vG~~P~~~~~~~  371 (373)
T 2mad_H          353 QDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             EEeeecCCCCCCcEEEEcc
Confidence            1111 22334688887643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.91  E-value=4.3e-07  Score=84.15  Aligned_cols=218  Identities=8%  Similarity=-0.047  Sum_probs=125.0

Q ss_pred             ceEEEeCCCC-----CCCcceEEEccCCCEEEEEeC--CCeEEEEECCCceE--Eeeeec--------CCCCccccC-CC
Q 048181           23 TFTKILFPPK-----AFGGESIAFEPVGGAFYTGVA--DGRILKYQAPDGFT--DFAFTT--------PTRSKAVCD-GT   84 (310)
Q Consensus        23 ~~~~~~~~~~-----~~~Pegia~d~~G~l~~~d~~--~g~I~r~~~~g~~~--~~~~~~--------~~~~~~~~~-g~   84 (310)
                      .+.+++++++     -..|+++++++||+.+|+...  .+.|..+|......  ++...+        ...+...|. |.
T Consensus       121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~  200 (386)
T 3sjl_D          121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS  200 (386)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSC
T ss_pred             EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCC
Confidence            3455666631     247999999999987777753  67888898875422  222110        000112232 11


Q ss_pred             ---------ccc-----cCCCCCCceee--EEEecCCCeE-EEEeCCCcEEEEeCCCCeEEEeecc--C------CCccc
Q 048181           85 ---------TNL-----DLGPICRRTFG--LALHYATRQL-YIADAYSGLLVVGPNGRLATQLATG--A------EGQAF  139 (310)
Q Consensus        85 ---------~~~-----~~~~~~~~P~G--la~d~~~g~L-yVad~~~gi~~id~~~~~~~~~~~~--~------~g~~~  139 (310)
                               ...     ........|..  .+++..+|++ |+++ ...++.+|..++..+.+...  +      .+-.-
T Consensus       201 ~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p  279 (386)
T 3sjl_D          201 LAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP  279 (386)
T ss_dssp             EEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE
T ss_pred             EEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccC
Confidence                     000     00011112322  3554457765 4444 44588888876544332110  0      11000


Q ss_pred             cCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCC-EEEEEec
Q 048181          140 HFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSS-FLLVSEF  218 (310)
Q Consensus       140 ~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~-~Lyv~d~  218 (310)
                      ....-++++++.+++|++......+.        ...+..+|+.+|.+++++..-+.--..|++|++++||+ .||+++.
T Consensus       280 ~g~q~~a~~~~~~~lyV~~~~~~~~~--------hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          280 GGWQQVAYHRALDRIYLLVDQRDEWR--------HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECCTTC--------TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred             CCcceeeECCCCCeEEEEeccccccc--------cCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence            11123888887889999853110000        00123579999999988765443334789999999997 8899998


Q ss_pred             CCCeEEEEEecCCCCCceee-ecCCCCCceeeeCC
Q 048181          219 TGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNP  252 (310)
Q Consensus       219 ~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~  252 (310)
                      ..+.|..||...   ++..- ...++.|.-|.+..
T Consensus       352 ~~~~VsViD~~t---~k~~~~i~~~~~p~~l~~s~  383 (386)
T 3sjl_D          352 GDKTLYIHDAES---GEELRSVNQLGHGPQVITTA  383 (386)
T ss_dssp             TTTEEEEEETTT---CCEEEEECCCCSSCCEEEEC
T ss_pred             CCCeEEEEECCC---CcEEEEecCCCCCceeEECC
Confidence            899999998753   33221 45567788888876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.91  E-value=4.2e-08  Score=90.64  Aligned_cols=70  Identities=9%  Similarity=-0.011  Sum_probs=49.3

Q ss_pred             eEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec-CCCeEEEEEecCCCCCcee-eecCCCCCceeeeCC
Q 048181          180 RLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF-TGNRTLKYWLRGPRANSFD-IINFQAKPHNIKRNP  252 (310)
Q Consensus       180 ~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~-~~~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~  252 (310)
                      .+..+|..++++..-+..-..|.||++++||+++|++.. ..+.|..+|...   ++.. .......|++|++..
T Consensus       295 ~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t---~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          295 NTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS---DQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             EEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS---CEEEEECCCCSCCCEEECCC
T ss_pred             CEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC---CcEEEEEECCCCCCEEEeec
Confidence            355777776655433332236999999999998999988 699999999853   2221 123346799999986

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.90  E-value=9.9e-07  Score=81.39  Aligned_cols=199  Identities=11%  Similarity=0.092  Sum_probs=129.1

Q ss_pred             CCCCcceEEEccCCCEEEEEeCC---------------CeEEEEECCCc--eE--EeeeecCCCCccccCCCccccCCCC
Q 048181           32 KAFGGESIAFEPVGGAFYTGVAD---------------GRILKYQAPDG--FT--DFAFTTPTRSKAVCDGTTNLDLGPI   92 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~---------------g~I~r~~~~g~--~~--~~~~~~~~~~~~~~~g~~~~~~~~~   92 (310)
                      .|....++.+|+.|+||++|...               -+|+.++....  ..  ++...              ......
T Consensus        85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p--------------~~~~~~  150 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFP--------------TRLVEK  150 (381)
T ss_dssp             SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECC--------------GGGCCC
T ss_pred             ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECC--------------HHhccc
Confidence            57788899999999999999641               26888887754  22  23221              011223


Q ss_pred             CCceeeEEEe-cC------CCeEEEEeCC-CcEEEEeCCCCeEEEeecc-----------CCCccc---cCccceEEeCC
Q 048181           93 CRRTFGLALH-YA------TRQLYIADAY-SGLLVVGPNGRLATQLATG-----------AEGQAF---HFLDGLDVDQG  150 (310)
Q Consensus        93 ~~~P~Gla~d-~~------~g~LyVad~~-~gi~~id~~~~~~~~~~~~-----------~~g~~~---~~pndvavd~~  150 (310)
                      ....+.|++| ..      ++.+||+|.. .+|+++|.++++...+...           .+|..+   ...++||++++
T Consensus       151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~  230 (381)
T 3q6k_A          151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR  230 (381)
T ss_dssp             GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred             CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence            3456789998 32      5789999975 4699999998876655421           123332   35788999885


Q ss_pred             ----CCeEEEEcCCCccCccceeEeeeecCCCceEEEEc------CC-CCeEEEeecCCCCCc--eeEEc-cCCCEEEEE
Q 048181          151 ----TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN------PR-SSQVTVLLRNLTGPA--GVAIS-VDSSFLLVS  216 (310)
Q Consensus       151 ----~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d------~~-~g~~~~~~~~l~~pn--GIa~~-~dg~~Lyv~  216 (310)
                          +..||+.-.+.                 -++|++.      +. ...++.+-+.-....  ++++| .+| .||++
T Consensus       231 ~~~~~~~LYf~plss-----------------~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~  292 (381)
T 3q6k_A          231 DSEGNRPAYYLAGSA-----------------IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFA  292 (381)
T ss_dssp             CTTSCCEEEEEESSC-----------------SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEE
T ss_pred             cCCCCeEEEEEECCC-----------------CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEE
Confidence                46888876543                 1344442      11 134444444322344  45676 556 59999


Q ss_pred             ecCCCeEEEEEecC-CC-CCceee---ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          217 EFTGNRTLKYWLRG-PR-ANSFDI---INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       217 d~~~~~I~~~~~~~-~~-~g~~~~---~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      +...+.|.+++.++ +. ....++   ...-..||+|+++.  +|.||+....
T Consensus       293 ~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~--~g~Lwv~sn~  343 (381)
T 3q6k_A          293 EANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS--KGGLWFMSNG  343 (381)
T ss_dssp             ESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT--TSCEEEEECS
T ss_pred             eccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC--CCeEEEEECc
Confidence            99999999999875 32 123333   22224799999999  9999998755

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.90  E-value=4.7e-06  Score=73.55  Aligned_cols=187  Identities=10%  Similarity=0.064  Sum_probs=120.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVa  111 (310)
                      ....+++|.++++++++...++.|..++...+.. ....                 ..........+++. ++++ |+++
T Consensus        98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-----------------~~~~~~~i~~~~~~-~~~~~l~~~  159 (337)
T 1gxr_A           98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE-----------------LTSSAPACYALAIS-PDSKVCFSC  159 (337)
T ss_dssp             SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE-----------------EECSSSCEEEEEEC-TTSSEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee-----------------cccCCCceEEEEEC-CCCCEEEEE
Confidence            4567899999999888888899999998775431 1110                 00122345688887 4555 4555


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      .....|..+|..+++.......    .-.....++++++ |+.+++-.                 .+|.+..+|..+++.
T Consensus       160 ~~dg~v~~~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~-----------------~dg~i~~~d~~~~~~  217 (337)
T 1gxr_A          160 CSDGNIAVWDLHNQTLVRQFQG----HTDGASCIDISND-GTKLWTGG-----------------LDNTVRSWDLREGRQ  217 (337)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTT-SSEEEEEE-----------------TTSEEEEEETTTTEE
T ss_pred             eCCCcEEEEeCCCCceeeeeec----ccCceEEEEECCC-CCEEEEEe-----------------cCCcEEEEECCCCce
Confidence            5555588899887654332221    1234678999995 76555432                 247888899877766


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ......-.....++++|+++.|+++ ...+.|+.+++....  ...+.........+++++  +|++.++....
T Consensus       218 ~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d  286 (337)
T 1gxr_A          218 LQQHDFTSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAY--CGKWFVSTGKD  286 (337)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSC--EEEECCCSSCEEEEEECT--TSSEEEEEETT
T ss_pred             EeeecCCCceEEEEECCCCCEEEEE-cCCCcEEEEECCCCC--eEEEcCCccceeEEEECC--CCCEEEEecCC
Confidence            5544444567899999999866554 567789999886431  122222334567899998  99876665543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.90  E-value=1.4e-07  Score=88.72  Aligned_cols=194  Identities=10%  Similarity=0.057  Sum_probs=115.1

Q ss_pred             CCCcceEEEccCCCEEEEEeCC------CeEEEEECCCc-eE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           33 AFGGESIAFEPVGGAFYTGVAD------GRILKYQAPDG-FT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~~~------g~I~r~~~~g~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      ...|..+.+.++| +|++...+      +.|..++.++. .. .+..           +      ......+..+-+.++
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~-----------~------~~~~~~~Yd~~~~p~  198 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI-----------D------RGDQYLAYDFWWNLP  198 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS-----------B------CTTCCCCCCEEEETT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc-----------C------CCCccccceEEECCC
Confidence            3479999999999 77776655      78999998743 21 2110           0      001123345666644


Q ss_pred             CCeEEEEeC-------------------CCcEEEEeCCCCeEEEeeccCCCccccCccceEE--eCCCCeEEEEcCCCcc
Q 048181          105 TRQLYIADA-------------------YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDV--DQGTGVVYFTDASGVY  163 (310)
Q Consensus       105 ~g~LyVad~-------------------~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvav--d~~~G~lyvtd~~~~~  163 (310)
                      .+.+|+++.                   .+.|..+|.++++........  ..-..|..+++  +|+...+|++..-.  
T Consensus       199 ~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg--~~g~~P~~i~f~~~Pdg~~aYV~~e~~--  274 (462)
T 2ece_A          199 NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG--EENRMALELRPLHDPTKLMGFINMVVS--  274 (462)
T ss_dssp             TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC--TTEEEEEEEEECSSTTCCEEEEEEEEE--
T ss_pred             CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC--CCCCccceeEeeECCCCCEEEEEEeee--
Confidence            455666652                   345999998876543222221  11234667766  88655788876400  


Q ss_pred             CccceeEeeeecCCCceEEEEcCCCCeEEE--e--------ecC-----------CCCCceeEEccCCCEEEEEecCCCe
Q 048181          164 DFRTIVKLNITNDSTGRLLSYNPRSSQVTV--L--------LRN-----------LTGPAGVAISVDSSFLLVSEFTGNR  222 (310)
Q Consensus       164 ~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~--~--------~~~-----------l~~pnGIa~~~dg~~Lyv~d~~~~~  222 (310)
                                ...-++.|+++..+.++.+.  +        ...           -..|.+|.+|+||++|||++...+.
T Consensus       275 ----------~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~  344 (462)
T 2ece_A          275 ----------LKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE  344 (462)
T ss_dssp             ----------TTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE
T ss_pred             ----------ccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE
Confidence                      00011233322111122111  0        001           2468999999999999999999999


Q ss_pred             EEEEEecCCCCCceee-----ec-------------CCCCCceeeeCCCCCC-cEEEEE
Q 048181          223 TLKYWLRGPRANSFDI-----IN-------------FQAKPHNIKRNPGLLQ-TFWEAA  262 (310)
Q Consensus       223 I~~~~~~~~~~g~~~~-----~~-------------l~g~Pdgl~~d~~~dG-~l~va~  262 (310)
                      |.+|+++.+  ++.++     .+             +.+.|.++++++  || .|||+.
T Consensus       345 VavfdV~d~--~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp--DGk~LyVaN  399 (462)
T 2ece_A          345 VRQYDISNP--FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR--DGRRVYVTN  399 (462)
T ss_dssp             EEEEECSST--TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT--TSSEEEEEC
T ss_pred             EEEEEecCC--CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC--CCCEEEEEc
Confidence            999998643  22222     11             123699999999  99 589987

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.87  E-value=1.3e-07  Score=89.87  Aligned_cols=221  Identities=17%  Similarity=0.130  Sum_probs=122.0

Q ss_pred             CCCCcceEEEccCCC--EEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC---
Q 048181           32 KAFGGESIAFEPVGG--AFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA---  104 (310)
Q Consensus        32 ~~~~Pegia~d~~G~--l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~---  104 (310)
                      .|..|.+|++.++|.  +|+++ ..|+|+++++++..  ..+.....    ....|.    .......+.||++++.   
T Consensus        12 gL~~P~~~a~~pdG~~rl~V~e-r~G~i~~~~~~g~~~~~~~~~~~~----~~~~g~----~~~~e~Gllgia~~P~f~~   82 (463)
T 2wg3_C           12 GLRQPVGALHSGDGSQRLFILE-KEGYVKILTPEGEIFKEPYLDIHK----LVQSGI----KGGDERGLLSLAFHPNYKK   82 (463)
T ss_dssp             EESSEEEEECCSSSSCCEEEEE-TTTEEEEECTTSCBCSSCSEECTT----TBCCCC----SSSCCCSEEEEEECTTHHH
T ss_pred             CCCCceEEEECCCCCeEEEEEe-CCceEEEEeCCCCeeeeeecCCcc----eeccCc----cccCCCcceeeEeCCCCcC
Confidence            577899999999985  66655 58999999876542  12211000    000000    0011345789999742   


Q ss_pred             CCeEEEEeCC-------------CcEEEEeCCCC--------eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCcc
Q 048181          105 TRQLYIADAY-------------SGLLVVGPNGR--------LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVY  163 (310)
Q Consensus       105 ~g~LyVad~~-------------~gi~~id~~~~--------~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~  163 (310)
                      ++.|||+...             ..|.++....+        ..+++........-.+...|+++| +|.|||+--....
T Consensus        83 n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~  161 (463)
T 2wg3_C           83 NGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMI  161 (463)
T ss_dssp             HCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTC
T ss_pred             CCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCC
Confidence            5899997431             24666654321        123333321111223467899999 5999998644311


Q ss_pred             C--ccceeEeeeecCCCceEEEEcCCCC--------------------eEEEeecCCCCCceeEEccC-----CC-EEEE
Q 048181          164 D--FRTIVKLNITNDSTGRLLSYNPRSS--------------------QVTVLLRNLTGPAGVAISVD-----SS-FLLV  215 (310)
Q Consensus       164 ~--~~~~~~~~~~~~~~G~l~~~d~~~g--------------------~~~~~~~~l~~pnGIa~~~d-----g~-~Lyv  215 (310)
                      .  .......  .....|+|+|+++++.                    ..++...++..|.|++|+|+     |+ ++|+
T Consensus       162 ~~~~~~~~q~--~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~  239 (463)
T 2wg3_C          162 TLDDMEEMDG--LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILC  239 (463)
T ss_dssp             CHHHHHHCTT--CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEE
T ss_pred             CCCccccccC--cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEe
Confidence            0  0000000  1234699999999852                    24567789999999999997     33 5788


Q ss_pred             EecCC-----CeEEEEEecCCCCCcee-eecCC----CCCceeeeCC-----CCCCcEEEEEecC
Q 048181          216 SEFTG-----NRTLKYWLRGPRANSFD-IINFQ----AKPHNIKRNP-----GLLQTFWEAAIIT  265 (310)
Q Consensus       216 ~d~~~-----~~I~~~~~~~~~~g~~~-~~~l~----g~Pdgl~~d~-----~~dG~l~va~~~~  265 (310)
                      +|...     .+|..+.. |..-|-.. +...+    ..|-|+++-.     +..|.++++++..
T Consensus       240 ~D~~G~~~~~~ei~~i~~-G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g  303 (463)
T 2wg3_C          240 SDSNGKNRSSARILQIIK-GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNG  303 (463)
T ss_dssp             ECC------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTS
T ss_pred             cccCCCCCCCCeEeeecc-CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCC
Confidence            88622     24444421 21112111 11111    3577888732     1256788888864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.85  E-value=8.5e-06  Score=78.09  Aligned_cols=214  Identities=13%  Similarity=0.101  Sum_probs=132.7

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      .+.-....++++.++|..+.+...++.|..++..+......                   .........+++. ++|+.+
T Consensus       341 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~-------------------~~~~~~v~~~~~s-~dg~~l  400 (577)
T 2ymu_A          341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-------------------TGHSSSVRGVAFS-PDGQTI  400 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE-------------------ECCSSCEEEEEEC-TTSSCE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe-------------------cCCCCCeEEEEEC-CCCCEE
Confidence            33334567899999999888888889998888776542211                   0122346689997 566655


Q ss_pred             EE-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IA-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Va-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++ .....|..++..+.....+..     +-....+++++|+ ++.+++-.                 .++.+..+|...
T Consensus       401 ~~~~~d~~v~~~~~~~~~~~~~~~-----~~~~v~~~~~s~d-~~~l~~~~-----------------~d~~v~~w~~~~  457 (577)
T 2ymu_A          401 ASASDDKTVKLWNRNGQLLQTLTG-----HSSSVWGVAFSPD-DQTIASAS-----------------DDKTVKLWNRNG  457 (577)
T ss_dssp             EEEETTSEEEEECTTCCEEEEEEC-----CSSCEEEEEECTT-SSEEEEEE-----------------TTSEEEEEETTS
T ss_pred             EEEeCCCEEEEEeCCCCEEEEecC-----CCCCeEEEEECCC-CCEEEEEc-----------------CCCEEEEEECCC
Confidence            54 334447777766544443321     1123568999995 76666532                 246677777654


Q ss_pred             CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCC
Q 048181          189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQ  267 (310)
Q Consensus       189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~  267 (310)
                      ..+..+...-...+.++|+|||++ +++-...+.|..++.++.   .... ..-......+++.+  +|++.++....  
T Consensus       458 ~~~~~~~~~~~~v~~~~~spd~~~-las~~~d~~i~iw~~~~~---~~~~~~~h~~~v~~l~~s~--dg~~l~s~~~d--  529 (577)
T 2ymu_A          458 QLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSP--DGQTIASASDD--  529 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSCE-EEEEETTSEEEEEETTSC---EEEEEECCSSCEEEEEECT--TSSCEEEEETT--
T ss_pred             CEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCEEEEEcCCCC---EEEEEeCCCCCEEEEEEcC--CCCEEEEEECc--
Confidence            444444443445689999999985 455566778888876532   1111 22223457789999  99876665443  


Q ss_pred             CCCCCceeeEEECCCCcEEEEEecCCCccccceeEEE
Q 048181          268 PAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       268 ~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~  304 (310)
                            +.+..+|.+|+.+..+....+    .|+.+.
T Consensus       530 ------g~v~lwd~~~~~~~~~~~h~~----~v~~~~  556 (577)
T 2ymu_A          530 ------KTVKLWNRNGQLLQTLTGHSS----SVWGVA  556 (577)
T ss_dssp             ------SEEEEECTTSCEEEEEECCSS----CEEEEE
T ss_pred             ------CEEEEEeCCCCEEEEEcCCCC----CEEEEE
Confidence                  267778888888877765433    455443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.85  E-value=2.1e-06  Score=78.20  Aligned_cols=205  Identities=8%  Similarity=0.063  Sum_probs=122.0

Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC---CC----eEEEEeCC
Q 048181           42 EPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA---TR----QLYIADAY  114 (310)
Q Consensus        42 d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~---~g----~LyVad~~  114 (310)
                      |+...+++.....+.++.++.+|+...+.                     ..++++++.+-+.   +|    .+|+++..
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~---------------------~~g~~nnVD~r~~~~l~g~~~dla~as~R~   95 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSLDGKMLHSY---------------------NTGKLNNVDIRYDFPLNGKKVDIAAASNRS   95 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEETTSCEEEEE---------------------CCSCEEEEEEEEEEEETTEEEEEEEEEECS
T ss_pred             CCCccEEEEEcCCCCEEEEcCCCcEEEEc---------------------cCCCcccEEEecccccCCceEeEEEEeCCC
Confidence            34557777777788899999987764432                     1246666655210   11    34677765


Q ss_pred             --C-c--EEEEeCCCCeEEEeecc--CCCccccCccceEE--eCCCCe--EEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          115 --S-G--LLVVGPNGRLATQLATG--AEGQAFHFLDGLDV--DQGTGV--VYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       115 --~-g--i~~id~~~~~~~~~~~~--~~g~~~~~pndvav--d~~~G~--lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                        . .  ++.+|++++.++.+...  .-+..+..|.|+++  ++.+|.  +|+++..                  |++..
T Consensus        96 ~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~------------------G~~~q  157 (355)
T 3amr_A           96 EGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE------------------GEFEQ  157 (355)
T ss_dssp             TTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS------------------SEEEE
T ss_pred             CCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC------------------CeEEE
Confidence              4 3  56668887776655321  10123567899999  775564  6777654                  33333


Q ss_pred             EcC---CCCeEE--E--eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---e---cCCCCCceeee
Q 048181          184 YNP---RSSQVT--V--LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---I---NFQAKPHNIKR  250 (310)
Q Consensus       184 ~d~---~~g~~~--~--~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~---~l~g~Pdgl~~  250 (310)
                      |+.   .+++++  .  -..--..|.|++++++..+||+++-..+ ||+|+.+.....+.++   .   .+..-|.||++
T Consensus       158 ~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai  236 (355)
T 3amr_A          158 YELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTI  236 (355)
T ss_dssp             EEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEE
T ss_pred             EEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEE
Confidence            211   122111  1  1222357899999998889999998755 9999965322112122   1   23345899999


Q ss_pred             CCCCC--CcEEEEEecCCCCCCCCceeeEEECC--CCcEEEEEecCCC
Q 048181          251 NPGLL--QTFWEAAIITRQPAGTPVPIGQRISA--FGAVLDTISFEAQ  294 (310)
Q Consensus       251 d~~~d--G~l~va~~~~~~~~~~~~~~v~~~~~--~G~~~~~~~~p~~  294 (310)
                      ...++  |.|++++.+..        ....|+.  ..+.+..+.+-.+
T Consensus       237 ~~~~~g~gyLivSsQG~~--------s~~Vydr~~~~~~vg~f~Ig~~  276 (355)
T 3amr_A          237 YYAADGKGYLMASSQGNS--------SYAIYDRQGKNKYVADFRITDG  276 (355)
T ss_dssp             EECGGGCEEEEEEEGGGT--------EEEEEESSTTCCEEEEEEECCC
T ss_pred             EecCCCCEEEEEEcCCCC--------EEEEEECCCCCcEEEEEEecCC
Confidence            42114  45788887763        4555664  4678888876544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.77  E-value=2.2e-05  Score=75.13  Aligned_cols=202  Identities=14%  Similarity=0.128  Sum_probs=123.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ....++++.+++..+++...++.|..++.++......                   .........+++. ++|+.+++-.
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~-------------------~~~~~~v~~~~~s-~~g~~l~~~~  363 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL-------------------TGHSSSVWGVAFS-PDGQTIASAS  363 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE-------------------CCCSSCEEEEEEC-TTSSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE-------------------eCCCCCEEEEEEC-CCCCEEEEEe
Confidence            4567899999999888888888888888775432211                   0122345688996 6676655433


Q ss_pred             CCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 YSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ..+ +..++..+.....+..     +-...+.++++++ |+.+++-.                 .++.|..+|.....+.
T Consensus       364 ~dg~v~~~~~~~~~~~~~~~-----~~~~v~~~~~s~d-g~~l~~~~-----------------~d~~v~~~~~~~~~~~  420 (577)
T 2ymu_A          364 DDKTVKLWNRNGQLLQTLTG-----HSSSVRGVAFSPD-GQTIASAS-----------------DDKTVKLWNRNGQLLQ  420 (577)
T ss_dssp             TTSEEEEEETTCCEEEEEEC-----CSSCEEEEEECTT-SSCEEEEE-----------------TTSEEEEECTTCCEEE
T ss_pred             CCCEEEEEcCCCCEEEEecC-----CCCCeEEEEECCC-CCEEEEEe-----------------CCCEEEEEeCCCCEEE
Confidence            334 6667766544433321     1134578999994 77666532                 2366777776433334


Q ss_pred             EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCC
Q 048181          193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGT  271 (310)
Q Consensus       193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~  271 (310)
                      .+...-....+++|+||+++| ++-...+.|..++.++.   .... .........+++++  +|.+.++....+     
T Consensus       421 ~~~~~~~~v~~~~~s~d~~~l-~~~~~d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~sp--d~~~las~~~d~-----  489 (577)
T 2ymu_A          421 TLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSP--DGQTIASASDDK-----  489 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTSC---EEEEEECCSSCEEEEEECT--TSCEEEEEETTS-----
T ss_pred             EecCCCCCeEEEEECCCCCEE-EEEcCCCEEEEEECCCC---EEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCC-----
Confidence            443333445789999999854 55566788888876542   1211 22233456788998  998777655432     


Q ss_pred             CceeeEEECCCCcEEEEEecC
Q 048181          272 PVPIGQRISAFGAVLDTISFE  292 (310)
Q Consensus       272 ~~~~v~~~~~~G~~~~~~~~p  292 (310)
                         .+..+|.+|+.+..+...
T Consensus       490 ---~i~iw~~~~~~~~~~~~h  507 (577)
T 2ymu_A          490 ---TVKLWNRNGQLLQTLTGH  507 (577)
T ss_dssp             ---EEEEEETTSCEEEEEECC
T ss_pred             ---EEEEEcCCCCEEEEEeCC
Confidence               455566666666555443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.77  E-value=4.1e-06  Score=78.69  Aligned_cols=201  Identities=8%  Similarity=-0.018  Sum_probs=120.9

Q ss_pred             cCCCEEEE-EeCCCeEEEEECCC---ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC----
Q 048181           43 PVGGAFYT-GVADGRILKYQAPD---GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY----  114 (310)
Q Consensus        43 ~~G~l~~~-d~~~g~I~r~~~~g---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~----  114 (310)
                      .+++.+|+ ...+++|+.++...   +.+......+      ++    ........+|+++.+. ++| |||+..+    
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~------~~----~~~~~g~s~Ph~~~~~-pdG-i~Vs~~g~~~g  160 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEP------EE----VKKVSGYSRLHTVHCG-PDA-IYISALGNEEG  160 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECH------HH----HHHHHCEEEEEEEEEC-SSC-EEEEEEEETTS
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeech------hh----cccccCCCcccceeEC-CCe-EEEEcCCCcCC
Confidence            55654444 56789999998642   2222221100      00    0000123479999996 677 9997543    


Q ss_pred             ---CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCC------ccCccceeEeeeecCCCceEEEEc
Q 048181          115 ---SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASG------VYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       115 ---~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~------~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                         .+++.+|.++.++..-... ++.+..++-|+.+.|+...+|+++...      .+...+    + +.....+|..||
T Consensus       161 ~~~g~v~vlD~~T~~v~~~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~----~-~~~~~d~V~v~D  234 (462)
T 2ece_A          161 EGPGGILMLDHYSFEPLGKWEI-DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH----L-KDRYGNRIHFWD  234 (462)
T ss_dssp             CSCCEEEEECTTTCCEEEECCS-BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT----H-HHHSCCEEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEEcc-CCCCccccceEEECCCCCEEEEccCcCccccccccchhh----h-hhccCCEEEEEE
Confidence               2599999998765432221 222344566888899634455555431      011110    0 002346899999


Q ss_pred             CCCCeEEEeecC---CCCCceeEE--ccCCCEEEEEec-----CCCeEEEEEecCCCCCcee------e------ecC--
Q 048181          186 PRSSQVTVLLRN---LTGPAGVAI--SVDSSFLLVSEF-----TGNRTLKYWLRGPRANSFD------I------INF--  241 (310)
Q Consensus       186 ~~~g~~~~~~~~---l~~pnGIa~--~~dg~~Lyv~d~-----~~~~I~~~~~~~~~~g~~~------~------~~l--  241 (310)
                      .+++++...++-   -..|.+|.|  +|+|+++||+..     .++.|++|..++   |..+      +      ..+  
T Consensus       235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~---g~~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED---GKWNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET---TEEEEEEEEEECCEECCSSCCG
T ss_pred             CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC---CceeEEEEEeCCCccccccccc
Confidence            887765443322   136788877  999999999988     888998877763   3211      1      111  


Q ss_pred             --------CCCCceeeeCCCCCC-cEEEEEecCC
Q 048181          242 --------QAKPHNIKRNPGLLQ-TFWEAAIITR  266 (310)
Q Consensus       242 --------~g~Pdgl~~d~~~dG-~l~va~~~~~  266 (310)
                              ++.|.+|.++.  || .|||+.++..
T Consensus       312 ~~~~f~~~~~~pa~I~lS~--DGrfLYVSnrg~d  343 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISL--DDKFLYLSLWGIG  343 (462)
T ss_dssp             GGGGGTEECCCCCCEEECT--TSCEEEEEETTTT
T ss_pred             cccccccCCCceeEEEECC--CCCEEEEEeCCCC
Confidence                    25689999999  99 5899999874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.75  E-value=3.3e-06  Score=72.76  Aligned_cols=180  Identities=11%  Similarity=0.014  Sum_probs=109.7

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCC-ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEe
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIAD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad  112 (310)
                      ...+++|.++|+.+++.. ++.|+.++.++ +......          .       .........+++. ++|+ |+++.
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~----------~-------~~~~~~~~~~~~s-pdg~~l~~~~  103 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD----------T-------GFATICNNDHGIS-PDGALYAISD  103 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC----------C-------TTCCCBCSCCEEC-TTSSEEEEEE
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec----------c-------ccccccccceEEC-CCCCEEEEEE
Confidence            577899999999666654 78999998876 4321110          0       0112345578887 5555 44444


Q ss_pred             C----CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          113 A----YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       113 ~----~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      .    ...|+.++.++++...+...      ...+.++++|++..|+++....               ..-+||.++..+
T Consensus       104 ~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~spdg~~l~~~~~~~---------------~~~~l~~~~~~~  162 (297)
T 2ojh_A          104 KVEFGKSAIYLLPSTGGTPRLMTKN------LPSYWHGWSPDGKSFTYCGIRD---------------QVFDIYSMDIDS  162 (297)
T ss_dssp             CTTTSSCEEEEEETTCCCCEECCSS------SSEEEEEECTTSSEEEEEEEET---------------TEEEEEEEETTT
T ss_pred             eCCCCcceEEEEECCCCceEEeecC------CCccceEECCCCCEEEEEECCC---------------CceEEEEEECCC
Confidence            2    23589999887665544221      1256789999533455554221               112688888777


Q ss_pred             CeEEEeecCCCCCceeEEccCCCEEEEEec--CCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEE
Q 048181          189 SQVTVLLRNLTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFW  259 (310)
Q Consensus       189 g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~  259 (310)
                      ++...+.......+.++|+|||+.|+++..  ...+||.++.++.   .... .........+++++  +|+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~s~--dg~~l  231 (297)
T 2ojh_A          163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERITDSAYGDWFPHPSP--SGDKV  231 (297)
T ss_dssp             CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CEEECCCCSEEEEEEEECT--TSSEE
T ss_pred             CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---CcEEEecCCcccCCeEECC--CCCEE
Confidence            776666555556789999999998887754  4456777765432   2222 11122345688888  99743

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.72  E-value=5.1e-05  Score=67.86  Aligned_cols=192  Identities=13%  Similarity=0.064  Sum_probs=120.3

Q ss_pred             eCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           28 LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        28 ~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      .+.+.-..-.++++.+++.++++...++.|..++...+.......                  ........+++. ++++
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~------------------~~~~~~~~~~~s-pdg~  135 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID------------------AGPVDAWTLAFS-PDSQ  135 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE------------------CCTTCCCCEEEC-TTSS
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe------------------CCCccEEEEEEC-CCCC
Confidence            345555567788999999988888899999999977543221110                  111234468887 6676


Q ss_pred             EEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          108 LYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       108 LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      .+++.... .+..++.++++....... .   -.....++++|+ |+.+++-.                 .+|.|..+|.
T Consensus       136 ~l~~g~~dg~v~i~~~~~~~~~~~~~~-~---~~~v~~~~~spd-g~~lasg~-----------------~dg~i~iwd~  193 (321)
T 3ow8_A          136 YLATGTHVGKVNIFGVESGKKEYSLDT-R---GKFILSIAYSPD-GKYLASGA-----------------IDGIINIFDI  193 (321)
T ss_dssp             EEEEECTTSEEEEEETTTCSEEEEEEC-S---SSCEEEEEECTT-SSEEEEEE-----------------TTSCEEEEET
T ss_pred             EEEEEcCCCcEEEEEcCCCceeEEecC-C---CceEEEEEECCC-CCEEEEEc-----------------CCCeEEEEEC
Confidence            66654443 477788776554322211 1   124568999994 87766543                 2477888888


Q ss_pred             CCCeEEEeecCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          187 RSSQVTVLLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       187 ~~g~~~~~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .+++......+- ...+.++|+||++ ++++-...+.|..+++...  ..... .+-......+++.+  +|.+.++...
T Consensus       194 ~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~sp--~~~~l~s~s~  268 (321)
T 3ow8_A          194 ATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA--NLAGTLSGHASWVLNVAFCP--DDTHFVSSSS  268 (321)
T ss_dssp             TTTEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTC--CEEEEECCCSSCEEEEEECT--TSSEEEEEET
T ss_pred             CCCcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc--ceeEEEcCCCCceEEEEECC--CCCEEEEEeC
Confidence            777654444332 3458999999998 5566677888988887532  11111 22223456788888  8877666544


Q ss_pred             C
Q 048181          265 T  265 (310)
Q Consensus       265 ~  265 (310)
                      .
T Consensus       269 D  269 (321)
T 3ow8_A          269 D  269 (321)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.71  E-value=1.8e-05  Score=69.70  Aligned_cols=183  Identities=8%  Similarity=-0.058  Sum_probs=118.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEe
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad  112 (310)
                      ....+++|.++++++++...++.|..++...+......                  .........++++ ++++ |+++.
T Consensus       142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~------------------~~~~~~i~~~~~~-~~~~~l~~~~  202 (337)
T 1gxr_A          142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF------------------QGHTDGASCIDIS-NDGTKLWTGG  202 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEEC-TTSSEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee------------------ecccCceEEEEEC-CCCCEEEEEe
Confidence            34678999999998888888999999997754322110                  1122356788997 4554 44454


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ....|..+|..+++...... .    -.....++++++ |+.+++-.                 .+|.+..+|..+++..
T Consensus       203 ~dg~i~~~d~~~~~~~~~~~-~----~~~v~~~~~s~~-~~~l~~~~-----------------~~~~i~~~~~~~~~~~  259 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQLQQHD-F----TSQIFSLGYCPT-GEWLAVGM-----------------ESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEEE-C----SSCEEEEEECTT-SSEEEEEE-----------------TTSCEEEEETTSSCEE
T ss_pred             cCCcEEEEECCCCceEeeec-C----CCceEEEEECCC-CCEEEEEc-----------------CCCcEEEEECCCCCeE
Confidence            44458888988765433221 1    123568899995 66555432                 2367888887766665


Q ss_pred             EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .+...-.....++++|+++.| ++-...+.|..+++..   +.... ......+..+++++  +|++.++...
T Consensus       260 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~~~~~---~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~  326 (337)
T 1gxr_A          260 QLHLHESCVLSLKFAYCGKWF-VSTGKDNLLNAWRTPY---GASIFQSKESSSVLSCDISV--DDKYIVTGSG  326 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTT---CCEEEEEECSSCEEEEEECT--TSCEEEEEET
T ss_pred             EEcCCccceeEEEECCCCCEE-EEecCCCcEEEEECCC---CeEEEEecCCCcEEEEEECC--CCCEEEEecC
Confidence            554444567899999999854 5556688899998764   22222 22334567788998  8876655443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.68  E-value=1.7e-05  Score=78.25  Aligned_cols=146  Identities=9%  Similarity=0.056  Sum_probs=85.8

Q ss_pred             ceeeEEEecCCCe-EEEEeCCC-----cEEEEeCCCC-eEEEeeccCCCccccCccceEEeC--CCCeEEEEcCCCccCc
Q 048181           95 RTFGLALHYATRQ-LYIADAYS-----GLLVVGPNGR-LATQLATGAEGQAFHFLDGLDVDQ--GTGVVYFTDASGVYDF  165 (310)
Q Consensus        95 ~P~Gla~d~~~g~-LyVad~~~-----gi~~id~~~~-~~~~~~~~~~g~~~~~pndvavd~--~~G~lyvtd~~~~~~~  165 (310)
                      .+..+++. ++|+ |+++....     .|+.+|.+++ ..+.+............+.++++|  + |+++++....    
T Consensus       259 ~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d-g~~l~~~~~~----  332 (706)
T 2z3z_A          259 FLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN-NQFIWQSRRD----  332 (706)
T ss_dssp             EEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS-SEEEEEECTT----
T ss_pred             eEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC-CEEEEEEccC----
Confidence            45678897 5665 66643322     4888999887 555443221111112246789998  7 6655543221    


Q ss_pred             cceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCce-eEEccCCCEEEEEecCCC----eEEEEEecCCCCCceeeec
Q 048181          166 RTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG-VAISVDSSFLLVSEFTGN----RTLKYWLRGPRANSFDIIN  240 (310)
Q Consensus       166 ~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnG-Ia~~~dg~~Lyv~d~~~~----~I~~~~~~~~~~g~~~~~~  240 (310)
                                 ..-+||.++.+++.++.+..+-..... ++|+|||+.||++....+    +|+++++++.   ..+...
T Consensus       333 -----------g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~---~~~~l~  398 (706)
T 2z3z_A          333 -----------GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG---KTKDLT  398 (706)
T ss_dssp             -----------SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC---CCEESC
T ss_pred             -----------CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC---Cceecc
Confidence                       234688888655555555433222234 799999999998877654    8888887642   222211


Q ss_pred             CCCCCceeeeCCCCCCcEEEEE
Q 048181          241 FQAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       241 l~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      .......+++++  ||+.++..
T Consensus       399 ~~~~~~~~~~sp--dg~~l~~~  418 (706)
T 2z3z_A          399 PESGMHRTQLSP--DGSAIIDI  418 (706)
T ss_dssp             CSSSEEEEEECT--TSSEEEEE
T ss_pred             CCCceEEEEECC--CCCEEEEE
Confidence            112345678888  88755443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.67  E-value=6.5e-07  Score=86.74  Aligned_cols=183  Identities=11%  Similarity=-0.062  Sum_probs=109.2

Q ss_pred             CcceEEEccCCCEEEEEeC-----CCeEEEEEC--CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec-CCC
Q 048181           35 GGESIAFEPVGGAFYTGVA-----DGRILKYQA--PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY-ATR  106 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~-----~g~I~r~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~-~~g  106 (310)
                      ...+++|.|| +++|+...     ..+|+.++.  +++...+.                     ........++.+ .++
T Consensus        66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~---------------------~~~~~~~~~~s~dg~~  123 (582)
T 3o4h_A           66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLE---------------------AVKPMRILSGVDTGEA  123 (582)
T ss_dssp             EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECT---------------------TSCSBEEEEEEECSSC
T ss_pred             ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccccc---------------------CCCCceeeeeCCCCCe
Confidence            4567888888 66665543     236777877  55433211                     111122334432 233


Q ss_pred             eEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          107 QLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       107 ~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      .+|++....++..+|.++++.+.+....      . ++++++|+ |+.+++-+..             ....+.|+.+|.
T Consensus       124 ~~~~s~~~~~~~l~d~~~g~~~~l~~~~------~-~~~~~spD-G~~la~~~~~-------------~~~~~~i~~~d~  182 (582)
T 3o4h_A          124 VVFTGATEDRVALYALDGGGLRELARLP------G-FGFVSDIR-GDLIAGLGFF-------------GGGRVSLFTSNL  182 (582)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEEES------S-CEEEEEEE-TTEEEEEEEE-------------ETTEEEEEEEET
T ss_pred             EEEEecCCCCceEEEccCCcEEEeecCC------C-ceEEECCC-CCEEEEEEEc-------------CCCCeEEEEEcC
Confidence            4565555555667788888766654321      1 68999995 7665532211             111256999998


Q ss_pred             CCCeEEEeecCCCCCceeEEccCCCEEEEEecCC-CeEEEEEecCCCCCceee-ecCCCCCceee--------eCCCCCC
Q 048181          187 RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG-NRTLKYWLRGPRANSFDI-INFQAKPHNIK--------RNPGLLQ  256 (310)
Q Consensus       187 ~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~-~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~--------~d~~~dG  256 (310)
                      .+++.+.+.......+.++|||||+.|+.++... .+|+++++++.   ...+ ......+.+++        +++  ||
T Consensus       183 ~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg  257 (582)
T 3o4h_A          183 SSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVEDLELPSKDFSSYRPTAITWLGYLP--DG  257 (582)
T ss_dssp             TTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEEECCCSCSHHHHHCCSEEEEEEECT--TS
T ss_pred             CCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEEEccCCCcChhhhhhccccceeEcC--CC
Confidence            8888877765545568999999999888555433 38999988653   2223 22222234455        888  99


Q ss_pred             cEEEEEecC
Q 048181          257 TFWEAAIIT  265 (310)
Q Consensus       257 ~l~va~~~~  265 (310)
                      .+|++....
T Consensus       258 ~~~~~~~~~  266 (582)
T 3o4h_A          258 RLAVVARRE  266 (582)
T ss_dssp             CEEEEEEET
T ss_pred             cEEEEEEcC
Confidence            877766543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.67  E-value=3.2e-06  Score=82.00  Aligned_cols=221  Identities=10%  Similarity=-0.018  Sum_probs=128.4

Q ss_pred             EEeCCCCCCCcceEEEc--cCCCEEEEEe------------------CCCeEEEEECCCceEEeeeecCCCCccccCCCc
Q 048181           26 KILFPPKAFGGESIAFE--PVGGAFYTGV------------------ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTT   85 (310)
Q Consensus        26 ~~~~~~~~~~Pegia~d--~~G~l~~~d~------------------~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~   85 (310)
                      .+++|. -.+|+|+++.  |++..+|+..                  .++.+..++.+.....+.               
T Consensus       127 ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~q---------------  190 (595)
T 1fwx_A          127 ILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ---------------  190 (595)
T ss_dssp             EEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEE---------------
T ss_pred             EEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEE---------------
Confidence            456773 2589999984  7887677762                  234566777775332211               


Q ss_pred             cccCCCCCCceeeEEEecCCCeEEEEeCCC--------------------------------------cEEEEeCCC--C
Q 048181           86 NLDLGPICRRTFGLALHYATRQLYIADAYS--------------------------------------GLLVVGPNG--R  125 (310)
Q Consensus        86 ~~~~~~~~~~P~Gla~d~~~g~LyVad~~~--------------------------------------gi~~id~~~--~  125 (310)
                          ....++|.++++++..+.+|+++...                                      +|.+||..+  +
T Consensus       191 ----I~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~  266 (595)
T 1fwx_A          191 ----VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS  266 (595)
T ss_dssp             ----EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC
T ss_pred             ----EEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC
Confidence                12234788999986566788876432                                      244444443  1


Q ss_pred             eE--EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe------------E
Q 048181          126 LA--TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ------------V  191 (310)
Q Consensus       126 ~~--~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~------------~  191 (310)
                      +.  ..+.      --..|.++.++|++..+|+++...                 .++..||..+.+            +
T Consensus       267 ~~~~~~Ip------vg~~PhGv~~sPDGk~v~V~~~~s-----------------~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          267 SLFTRYIP------IANNPHGCNMAPDKKHLCVAGKLS-----------------PTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             CSSEEEEE------EESSCCCEEECTTSSEEEEECTTS-----------------SBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             ceeEEEEe------cCCCceEEEEcCCCCEEEEeCCCC-----------------CeEEEEECcccccccccccCcccce
Confidence            11  1110      114789999999644688888643                 456666654321            2


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC---CCc--eee-ecCC--C------CCceeeeCCCCCCc
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR---ANS--FDI-INFQ--A------KPHNIKRNPGLLQT  257 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~---~g~--~~~-~~l~--g------~Pdgl~~d~~~dG~  257 (310)
                      ..-..--..|.+++|++|| .+|++....++|.+++++...   .|.  .++ ..++  -      .+-|+++++  ||.
T Consensus       324 ~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~--DGk  400 (595)
T 1fwx_A          324 VAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA--TND  400 (595)
T ss_dssp             EECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC--CSS
T ss_pred             EEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC--CCC
Confidence            2222233589999999999 899999999999999986410   000  111 1121  1      236788888  996


Q ss_pred             -EEEEEecCCCCC----C--CCceeeEEECCCCcEEEEEecCC
Q 048181          258 -FWEAAIITRQPA----G--TPVPIGQRISAFGAVLDTISFEA  293 (310)
Q Consensus       258 -l~va~~~~~~~~----~--~~~~~v~~~~~~G~~~~~~~~p~  293 (310)
                       ||++.....+-.    |  +...+++.+ +.|+.......|.
T Consensus       401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~di-s~~~m~lv~d~p~  442 (595)
T 1fwx_A          401 WLVCLSKFSKDRFLNVGPLKPENDQLIDI-SGDKMVLVHDGPT  442 (595)
T ss_dssp             EEEEEESCCTTSSCCCCSSCCEEEEEEEC-SSSSCEEEEEEEE
T ss_pred             EEEEcCCCCccccccCCCCCCCcceEEEc-CCCcEEEEEEEcC
Confidence             555555442221    1  222345555 4455444444454

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.66  E-value=6.4e-06  Score=70.93  Aligned_cols=182  Identities=12%  Similarity=0.093  Sum_probs=109.5

Q ss_pred             CcceEEEccCCCEEEEEe----CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EE
Q 048181           35 GGESIAFEPVGGAFYTGV----ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LY  109 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~----~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-Ly  109 (310)
                      .+.+++|.++|..+++..    ...+|+.++.+++.....                    ........+++. ++|+ |+
T Consensus        86 ~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~~s-pdg~~l~  144 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM--------------------TKNLPSYWHGWS-PDGKSFT  144 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC--------------------CSSSSEEEEEEC-TTSSEEE
T ss_pred             cccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe--------------------ecCCCccceEEC-CCCCEEE
Confidence            456799999998666655    257888888765432110                    111235677886 4554 55


Q ss_pred             EEe-CCC--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181          110 IAD-AYS--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       110 Vad-~~~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                      ++. ...  .|+.++.++++...+...     ...++.++++++ |+ ++++....               ...+||.++
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~d-g~~l~~~~~~~---------------~~~~i~~~~  203 (297)
T 2ojh_A          145 YCGIRDQVFDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPD-GRWIYFNSSRT---------------GQMQIWRVR  203 (297)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEECCCS-----SSCEEEEEECTT-SSEEEEEECTT---------------SSCEEEEEE
T ss_pred             EEECCCCceEEEEEECCCCcceEcccC-----CCccccceECCC-CCEEEEEecCC---------------CCccEEEEC
Confidence            443 222  488888877665544321     124578999995 65 66553211               235788888


Q ss_pred             CCCCeEEEeecCCCCCceeEEccCCCEEEEEecC----------CCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCC
Q 048181          186 PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT----------GNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGL  254 (310)
Q Consensus       186 ~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~----------~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~  254 (310)
                      ..++....+.........++|+|||++|+++...          ..+|+.+++.+........ ....+....+++++  
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp--  281 (297)
T 2ojh_A          204 VDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP--  281 (297)
T ss_dssp             TTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT--
T ss_pred             CCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC--
Confidence            7666665554433445679999999988776553          2568888886532111111 12234467788888  


Q ss_pred             CCcEEE
Q 048181          255 LQTFWE  260 (310)
Q Consensus       255 dG~l~v  260 (310)
                      +|...+
T Consensus       282 dg~~l~  287 (297)
T 2ojh_A          282 DGDEFA  287 (297)
T ss_dssp             TSSEEE
T ss_pred             CCCEEE
Confidence            887433

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.63  E-value=0.0001  Score=64.91  Aligned_cols=211  Identities=13%  Similarity=0.072  Sum_probs=125.4

Q ss_pred             EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           27 ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        27 ~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      ..+.+.-....+++|.++|+++++...++.|..++...+ .....                   .........+++. ++
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-------------------~~h~~~v~~~~~~-~~   76 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------------------SGHKLGISDVAWS-SD   76 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-------------------CCCSSCEEEEEEC-TT
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-------------------ccCCCceEEEEEc-CC
Confidence            344555556789999999998888888999998887643 22111                   1122345678997 56


Q ss_pred             CeEEEE-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          106 RQLYIA-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       106 g~LyVa-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      ++++++ .....|..+|.++++.......    .-.....++++++ ++++++-.                 .+|.+..+
T Consensus        77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~s~~-----------------~d~~i~iw  134 (312)
T 4ery_A           77 SNLLVSASDDKTLKIWDVSSGKCLKTLKG----HSNYVFCCNFNPQ-SNLIVSGS-----------------FDESVRIW  134 (312)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSS-SSEEEEEE-----------------TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEEEEcC----CCCCEEEEEEcCC-CCEEEEEe-----------------CCCcEEEE
Confidence            665554 4444477788877654322211    1123567889984 77666543                 24678888


Q ss_pred             cCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEE
Q 048181          185 NPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       185 d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      |..+++...... .-.....++++++++. +++-...+.|..+++.... -...+ .........+++++  +|++.++.
T Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~~~  210 (312)
T 4ery_A          135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSP--NGKYILAA  210 (312)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCC-EEEEECCSSCCCEEEEEECT--TSSEEEEE
T ss_pred             ECCCCEEEEEecCCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCc-eeeEEeccCCCceEEEEECC--CCCEEEEE
Confidence            877665433332 2234578999999985 4555667888888875321 00111 11112235588888  88766665


Q ss_pred             ecCCCCCCCCceeeEEECC-CCcEEEEEec
Q 048181          263 IITRQPAGTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       263 ~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                      ...+        .+..+|- .++.+..+..
T Consensus       211 ~~d~--------~i~iwd~~~~~~~~~~~~  232 (312)
T 4ery_A          211 TLDN--------TLKLWDYSKGKCLKTYTG  232 (312)
T ss_dssp             ETTT--------EEEEEETTTTEEEEEECS
T ss_pred             cCCC--------eEEEEECCCCcEEEEEEe
Confidence            4432        4555553 3555554443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.61  E-value=2.5e-06  Score=76.54  Aligned_cols=196  Identities=11%  Similarity=0.031  Sum_probs=125.2

Q ss_pred             ecceEEEeCCCCC----CCcceEEEccCC-CEEEEE---eCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCC
Q 048181           21 IPTFTKILFPPKA----FGGESIAFEPVG-GAFYTG---VADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGP   91 (310)
Q Consensus        21 ~~~~~~~~~~~~~----~~Pegia~d~~G-~l~~~d---~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~   91 (310)
                      ...+.++.+.+.-    ..-.+.++.++| .+||++   ..+..|++++.+|+. +.+.           .         
T Consensus        87 ~~~Iy~i~~dg~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt-----------~---------  146 (302)
T 3s25_A           87 RNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK-----------N---------  146 (302)
T ss_dssp             SEEEEEEETTSCCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEE-----------S---------
T ss_pred             CCeEEEEeCCCCcceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEe-----------C---------
Confidence            4556666665431    111234555554 688888   578899999998753 3221           0         


Q ss_pred             CCCceeeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeE
Q 048181           92 ICRRTFGLALHYATRQLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVK  170 (310)
Q Consensus        92 ~~~~P~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~  170 (310)
                      ....|  +.+  ..+.||.++.+ ..|++++.+++..+.+..   + +.    ...++|+++.||+++...         
T Consensus       147 ~~~~~--~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~-~~----~~~~~P~g~~iy~t~~~~---------  205 (302)
T 3s25_A          147 HYLFT--CNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYD---C-NC----YKPVVLDDTNVYYMDVNR---------  205 (302)
T ss_dssp             SCCCC--SEE--ETTEEEEECTTTCCEEEEETTTTEEEEEEC---S-CE----EEEEEEETTEEEEEEGGG---------
T ss_pred             CCceE--eeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeC---C-Cc----cceeeecCCEEEEEEcCC---------
Confidence            00111  233  47889998763 459999999877666532   2 11    134566679999998642         


Q ss_pred             eeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEE-ecCCCeEEEEEecCCCCCceee-ecCCCCCcee
Q 048181          171 LNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVS-EFTGNRTLKYWLRGPRANSFDI-INFQAKPHNI  248 (310)
Q Consensus       171 ~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~-d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl  248 (310)
                             ..+|++.+.+++..+++.+..    -..++|+|+.||.+ +.....|++++++|.  ....+ .+ .  ...|
T Consensus       206 -------~~~I~~~~ldG~~~~~Lt~~~----~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~--~r~~l~~~-~--~~~i  269 (302)
T 3s25_A          206 -------DNAIVHVNINNPNPVVLTEAN----IEHYNVYGSLIFYQRGGDNPALCVVKNDGT--GFKELAKG-E--FCNI  269 (302)
T ss_dssp             -------TTEEEEECSSSCCCEECSCSC----EEEEEEETTEEEEEECSSSCEEEEEETTSC--CCEEEEES-C--EEEE
T ss_pred             -------CcEEEEEECCCCCeEEEeCCC----cceEEECCCEEEEEECCCCcEEEEEECCCC--ccEEeeCC-c--cceE
Confidence                   147999998876666655432    14588999999997 556789999999974  22333 22 1  2267


Q ss_pred             eeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCc
Q 048181          249 KRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGA  284 (310)
Q Consensus       249 ~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~  284 (310)
                      ++..   +.||-+.+..+        .+.++..||.
T Consensus       270 ~i~~---d~Iy~td~~~~--------~i~~~~~dGs  294 (302)
T 3s25_A          270 NVTS---QYVYFTDFVSN--------KEYCTSTQNP  294 (302)
T ss_dssp             EECS---SEEEEEETTTC--------CEEEEESSSC
T ss_pred             EEeC---CEEEEEECCCC--------eEEEEECCCC
Confidence            7764   68999988753        5777777775

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.58  E-value=3.5e-06  Score=84.59  Aligned_cols=221  Identities=14%  Similarity=0.115  Sum_probs=126.2

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCc----eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDG----FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ..++..|++|++| ++.. +.+.++++..+    ...+..           +..  ...-.......|..| ++|+|||+
T Consensus       326 v~~i~~D~~g~lW-iGt~-~Gl~~~~~~~~~~~~~~~~~~-----------~~~--~~~l~~~~v~~i~~d-~~g~lWig  389 (758)
T 3ott_A          326 FYSLFRDSKGFYW-FGGA-NGLIRFTDPAGERHDAIWYRM-----------GDK--TYPLSHNRIRHIYED-KEQQLWIA  389 (758)
T ss_dssp             EEEEEECTTCCEE-EEET-TEEEEESCTTSSCCCCEEECT-----------TCS--SSCCSCSCEEEEEEC-TTSCEEEE
T ss_pred             EEEEEEcCCCCEE-EeeC-CcceeecccccccceeEEecc-----------CCc--CCCCCCCceEEEEEC-CCCCEEEE
Confidence            4577888889954 5554 56889876632    111110           000  000012235678887 78999998


Q ss_pred             eCCCcEEEEeCCCCeEEEeecc-CCC-ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC-
Q 048181          112 DAYSGLLVVGPNGRLATQLATG-AEG-QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-  188 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~-~~g-~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-  188 (310)
                      .. .||.++++++++.+.+... ..+ .+.+....+..|. +|+||++...                  +.|+++|+++ 
T Consensus       390 t~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWigT~~------------------~Gl~~~~~~~~  449 (758)
T 3ott_A          390 TD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQLWISTCL------------------GGIFVVDKHKL  449 (758)
T ss_dssp             ET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEEEEEESS------------------SCEEEEEHHHH
T ss_pred             eC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCEEEEECC------------------CceEEEccccc
Confidence            74 5899999998876654321 111 1223456788888 5999997643                  2377776532 


Q ss_pred             -----CeEE---Ee--ecCCC--CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCC--CCCceeeeC
Q 048181          189 -----SQVT---VL--LRNLT--GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQ--AKPHNIKRN  251 (310)
Q Consensus       189 -----g~~~---~~--~~~l~--~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~--g~Pdgl~~d  251 (310)
                           +...   ..  ..++.  ....|..+++|+ ||+.....+-|.+|+...   +..+.   ..+.  ..+..+..|
T Consensus       450 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~---~~~~~~~~~~~~~~~~~~~i~~d  525 (758)
T 3ott_A          450 MQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRT---REVTKLFADELTGEKSPNYLLCD  525 (758)
T ss_dssp             HHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTT---TEEEEECTTTSCGGGCEEEEEEC
T ss_pred             cccCCcceecccccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCC---CceEEecCCCcCCCcccceEEEC
Confidence                 1111   10  11222  246788899887 888333345688998643   23322   1221  246789999


Q ss_pred             CCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEEecCCC
Q 048181          252 PGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQPFGGA  309 (310)
Q Consensus       252 ~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~~~~~~  309 (310)
                      .  +|+||++...          .+.+++|+......+.. .+.....|..+++.+|.
T Consensus       526 ~--~g~lWigt~~----------Gl~~~~~~~~~~~~~~~-~gl~~~~i~~i~~~~g~  570 (758)
T 3ott_A          526 E--DGLLWVGFHG----------GVMRINPKDESQQSISF-GSFSNNEILSMTCVKNS  570 (758)
T ss_dssp             T--TSCEEEEETT----------EEEEECC--CCCCBCCC-CC---CCEEEEEEETTE
T ss_pred             C--CCCEEEEecC----------ceEEEecCCCceEEecc-cCCCccceEEEEECCCC
Confidence            9  9999999753          48899987654444421 22222356666665543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.57  E-value=0.00011  Score=65.70  Aligned_cols=209  Identities=6%  Similarity=-0.107  Sum_probs=119.1

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-Ee
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-AD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad  112 (310)
                      ...+++|.++|+++++...++.|..++.+++. .....                 +.........+++. +++++++ +.
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-----------------~~~h~~~v~~~~~~-~~~~~l~~~~   71 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-----------------LKEHNGQVTGVDWA-PDSNRIVTCG   71 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE-----------------EECCSSCEEEEEEE-TTTTEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee-----------------ecCCCCcccEEEEe-CCCCEEEEEc
Confidence            46789999999988888889999988876542 11110                 00122345689997 5665554 44


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe--
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ--  190 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~--  190 (310)
                      ....|..+|.++++.........  .-...+.++++++ |+.+++-..                 +|.+..+|..+++  
T Consensus        72 ~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~l~~~~~-----------------d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPN-EKKFAVGSG-----------------SRVISICYFEQENDW  131 (372)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTT-SSEEEEEET-----------------TSSEEEEEEETTTTE
T ss_pred             CCCeEEEEECCCCeeeeeEEeec--CCCceeEEEECCC-CCEEEEEeC-----------------CCEEEEEEecCCCcc
Confidence            44447777777665332221111  1234678999995 665554322                 2445444443332  


Q ss_pred             --EEEeecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC---------------CCcee-e-ecCCCCCceeee
Q 048181          191 --VTVLLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR---------------ANSFD-I-INFQAKPHNIKR  250 (310)
Q Consensus       191 --~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~---------------~g~~~-~-~~l~g~Pdgl~~  250 (310)
                        ....... -.....++|+|+++.| ++-...+.|+.+++....               .+... . ....+....+++
T Consensus       132 ~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  210 (372)
T 1k8k_C          132 WVCKHIKKPIRSTVLSLDWHPNSVLL-AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF  210 (372)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSSEE-EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             eeeeeeecccCCCeeEEEEcCCCCEE-EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence              1222222 3456899999999854 555567888888864210               11111 1 122234677899


Q ss_pred             CCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          251 NPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       251 d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                      ++  +|++.++....+        .+..+|. .++.+..+...
T Consensus       211 ~~--~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          211 SA--NGSRVAWVSHDS--------TVCLADADKKMAVATLASE  243 (372)
T ss_dssp             CS--SSSEEEEEETTT--------EEEEEEGGGTTEEEEEECS
T ss_pred             CC--CCCEEEEEeCCC--------EEEEEECCCCceeEEEccC
Confidence            98  887655544332        4555664 45666555544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.57  E-value=6e-05  Score=67.07  Aligned_cols=200  Identities=8%  Similarity=0.097  Sum_probs=116.0

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY  103 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~  103 (310)
                      ++.+.+.+.-....+++|.++|.++++...++.|..++...+......                  .........+++. 
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------------~~h~~~v~~~~~~-   83 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL------------------DGHTGTIWSIDVD-   83 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE------------------CCCSSCEEEEEEC-
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh------------------hhcCCcEEEEEEc-
Confidence            344555655566788999999998888888999999987643221110                  1122345688997 


Q ss_pred             CCCeEEE-EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          104 ATRQLYI-ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       104 ~~g~LyV-ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                      +++++++ +.....|..+|..+++...... .    -.....++++++ |..+++-....            ...+|.+.
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~----~~~v~~~~~~~~-~~~l~~~~~~~------------~~~~g~i~  145 (369)
T 3zwl_B           84 CFTKYCVTGSADYSIKLWDVSNGQCVATWK-S----PVPVKRVEFSPC-GNYFLAILDNV------------MKNPGSIN  145 (369)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEE-C----SSCEEEEEECTT-SSEEEEEECCB------------TTBCCEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEee-c----CCCeEEEEEccC-CCEEEEecCCc------------cCCCCEEE
Confidence            5665555 4444448888887765433322 1    124578999995 66655432210            01124444


Q ss_pred             EEcCCCC------------eEEEeec--CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCce
Q 048181          183 SYNPRSS------------QVTVLLR--NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHN  247 (310)
Q Consensus       183 ~~d~~~g------------~~~~~~~--~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdg  247 (310)
                      .+|..++            ....+..  .......++++|+++.|++ -...+.|..|++.... ..... ....+....
T Consensus       146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~  223 (369)
T 3zwl_B          146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA-GHKDGKISKYDVSNNY-EYVDSIDLHEKSISD  223 (369)
T ss_dssp             EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE-EETTSEEEEEETTTTT-EEEEEEECCSSCEEE
T ss_pred             EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE-EcCCCEEEEEECCCCc-EeEEEEecCCCceeE
Confidence            4443211            1111111  1226689999999986554 4567889999886421 11111 222344677


Q ss_pred             eeeCCCCCCcEEEEEec
Q 048181          248 IKRNPGLLQTFWEAAII  264 (310)
Q Consensus       248 l~~d~~~dG~l~va~~~  264 (310)
                      +++++  +|.+.++...
T Consensus       224 ~~~~~--~~~~l~~~~~  238 (369)
T 3zwl_B          224 MQFSP--DLTYFITSSR  238 (369)
T ss_dssp             EEECT--TSSEEEEEET
T ss_pred             EEECC--CCCEEEEecC
Confidence            88988  8876655543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.55  E-value=0.00016  Score=65.54  Aligned_cols=205  Identities=9%  Similarity=-0.031  Sum_probs=119.7

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEeC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad~  113 (310)
                      ...+++|.++|.++++...++.|..++..+......                   .........+++. ++++ |+++..
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~-------------------~~~~~~v~~~~~~-~~~~~l~~~~~  169 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVL-------------------NFHRAPIVSVKWN-KDGTHIISMDV  169 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE-------------------CCCCSCEEEEEEC-TTSSEEEEEET
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeec-------------------cCCCccEEEEEEC-CCCCEEEEEec
Confidence            567899999999889988899999998665432211                   1122345688997 4555 555555


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCc-----------cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQ-----------AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~-----------~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                      ...|..+|..+++...........           .-.....+++.+ ++.+++...                  +|.|+
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~g~i~  230 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-DDKFVIPGP------------------KGAIF  230 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-TTEEEEECG------------------GGCEE
T ss_pred             CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-CCEEEEEcC------------------CCeEE
Confidence            555888888776543322211110           001156788887 476655432                  46788


Q ss_pred             EEcCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEE
Q 048181          183 SYNPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEA  261 (310)
Q Consensus       183 ~~d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va  261 (310)
                      .+|..+++..... ..-.....++++|+++.|+ +-...+.|..+++.... -...+.........+++.+  +| ++++
T Consensus       231 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~--~~-~l~~  305 (425)
T 1r5m_A          231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL-SASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVG--DD-KVIS  305 (425)
T ss_dssp             EEETTCSSCSEEECCCSSCEEEEEEETTTTEEE-EEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEET--TT-EEEE
T ss_pred             EEEcCCCceeeeeccCCCceEEEEECCCCCEEE-EEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECC--CC-EEEE
Confidence            8887765443222 2233457899999998554 55567888888875321 1111122233457788888  88 4333


Q ss_pred             EecCCCCCCCCceeeEEECC-CCcEEEEEec
Q 048181          262 AIITRQPAGTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       262 ~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                      ....        +.+..+|. .++.+..+..
T Consensus       306 ~~~d--------~~i~i~d~~~~~~~~~~~~  328 (425)
T 1r5m_A          306 CSMD--------GSVRLWSLKQNTLLALSIV  328 (425)
T ss_dssp             EETT--------SEEEEEETTTTEEEEEEEC
T ss_pred             EeCC--------CcEEEEECCCCcEeEeccc
Confidence            3332        24555553 3555554443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.52  E-value=6e-06  Score=75.16  Aligned_cols=162  Identities=12%  Similarity=0.088  Sum_probs=93.0

Q ss_pred             cceEEEccCCCEEEEEeC------CCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           36 GESIAFEPVGGAFYTGVA------DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~------~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ..+++|.|||.++.+...      ++.|+.++...+....         ..|.     ........-..+++. ++++++
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~---------~~~~-----~~~~~~~~V~~~~~s-~d~~~l  109 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE---------SLCT-----AGVQTEAGVTDVAWV-SEKGIL  109 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---------GGCS-----EEEECSSCEEEEEEE-TTTEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---------eEec-----ccCCCCCCEEEEEEc-CCCCEE
Confidence            468999999998887754      4566666543221100         0000     000111234578897 678888


Q ss_pred             EEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          110 IADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       110 Vad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      ++.....|...|..+++............-...+.++++|+ |+.+++-.                 .+|.|..+|..++
T Consensus       110 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~sgs-----------------~dg~v~iwd~~~~  171 (357)
T 4g56_B          110 VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVSGG-----------------KDFSVKVWDLSQK  171 (357)
T ss_dssp             EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS-SSEEEEEE-----------------TTSCEEEEETTTT
T ss_pred             EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC-CCEEEEEe-----------------CCCeEEEEECCCC
Confidence            77655457666766544221111000011234678999994 87776643                 2467888888777


Q ss_pred             eEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          190 QVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       190 ~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      +...... .-...+.++|+++++.++++-...+.|..+++..
T Consensus       172 ~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          172 AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred             cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence            6544333 2345688999999877788888888898887753

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.50  E-value=2e-05  Score=79.02  Aligned_cols=205  Identities=17%  Similarity=0.193  Sum_probs=120.4

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ..++..|++|++ |++. .+.|.++++.++ .+.+......       +      .........|..| ++|+|||+...
T Consensus       375 v~~i~~d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~-------~------~~~~~~v~~i~~d-~~g~lWigT~~  438 (758)
T 3ott_A          375 IRHIYEDKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNT-------G------TYNTNWTYYIFED-TAGQLWISTCL  438 (758)
T ss_dssp             EEEEEECTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC---------------CBSSSEEEEEEC-TTSEEEEEESS
T ss_pred             eEEEEECCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCc-------C------CCCCceEEEEEEc-CCCCEEEEECC
Confidence            467888889995 4555 468999998754 3333211000       0      0011234567777 78999998777


Q ss_pred             CcEEEEeCCC------CeEE---EeeccCCCccccCccceEEeCCCCeEEE--EcCCCccCccceeEeeeecCCCceEEE
Q 048181          115 SGLLVVGPNG------RLAT---QLATGAEGQAFHFLDGLDVDQGTGVVYF--TDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       115 ~gi~~id~~~------~~~~---~~~~~~~g~~~~~pndvavd~~~G~lyv--td~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      .||.++++++      +...   .+ ....+.+-.....+..|+ +|+||+  +..                   +.|++
T Consensus       439 ~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~-------------------~Gl~~  497 (758)
T 3ott_A          439 GGIFVVDKHKLMQSTSGQYIAEQNY-SVHNGLSGMFINQIIPDN-EGNVWVLLYNN-------------------KGIDK  497 (758)
T ss_dssp             SCEEEEEHHHHHHCCSSEEECSEEE-CGGGTCSCSCEEEEEECT-TSCEEEEETTC-------------------SSEEE
T ss_pred             CceEEEccccccccCCcceeccccc-ccccccccceeeeEEEcC-CCCEEEEccCC-------------------CCcEE
Confidence            7899998653      1111   11 111122223466788998 599998  321                   23999


Q ss_pred             EcCCCCeEEEeec-CC---CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC-CCCceeeeCCCCCCcE
Q 048181          184 YNPRSSQVTVLLR-NL---TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ-AKPHNIKRNPGLLQTF  258 (310)
Q Consensus       184 ~d~~~g~~~~~~~-~l---~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~-g~Pdgl~~d~~~dG~l  258 (310)
                      +|+++++.+.... .+   ..++.|..+.+|+ ||++-.  +-|.+|+............+++ ....+|.. .  +|+|
T Consensus       498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~-~--~g~l  571 (758)
T 3ott_A          498 INPRTREVTKLFADELTGEKSPNYLLCDEDGL-LWVGFH--GGVMRINPKDESQQSISFGSFSNNEILSMTC-V--KNSI  571 (758)
T ss_dssp             EETTTTEEEEECTTTSCGGGCEEEEEECTTSC-EEEEET--TEEEEECC--CCCCBCCCCC---CCEEEEEE-E--TTEE
T ss_pred             EeCCCCceEEecCCCcCCCcccceEEECCCCC-EEEEec--CceEEEecCCCceEEecccCCCccceEEEEE-C--CCCE
Confidence            9998887776532 12   2467899999886 888753  4688998653211111002333 22345554 4  6999


Q ss_pred             EEEEecCCCCCCCCceeeEEECCCCcEEEEEecCC
Q 048181          259 WEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEA  293 (310)
Q Consensus       259 ~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~  293 (310)
                      |++...          .+.++||+-.....+.+|.
T Consensus       572 Wi~t~~----------Gl~~~~~~~~~~~~~~~~~  596 (758)
T 3ott_A          572 WVSTTN----------GLWIIDRKTMDARQQNMTN  596 (758)
T ss_dssp             EEEESS----------CEEEEETTTCCEEEC--CC
T ss_pred             EEECCC----------CeEEEcCCCceeEEecCCC
Confidence            999854          3788887655555555554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.50  E-value=4.7e-06  Score=74.71  Aligned_cols=138  Identities=9%  Similarity=0.148  Sum_probs=91.4

Q ss_pred             cCCCEEEEEe-CCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC------
Q 048181           43 PVGGAFYTGV-ADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY------  114 (310)
Q Consensus        43 ~~G~l~~~d~-~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~------  114 (310)
                      .++.+||... .+++|+|++.+|.. +.+.                      ...+.-|.+  .++.||.++..      
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~----------------------~~~~~~i~~--~g~~Iyy~~~~~~~~~~   79 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLS----------------------NDTAMYINA--DKNYVYYVRNNNQKITS   79 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCEEEE----------------------EEEEEEEEE--CSSEEEEEEECC-----
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCEEcc----------------------CCceeeEEE--cCCEEEEEECCCCcccc
Confidence            3556777754 37899999998753 2221                      012445655  47888887542      


Q ss_pred             --------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          115 --------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       115 --------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                              ..|++++.++++.+.+... .+      +.++++  ++.||++|...              ..+..|++++.
T Consensus        80 ~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~~------~~~s~~--g~~Iy~~~~~~--------------~~~~~Iy~~~~  136 (302)
T 3s25_A           80 QTFFSYDRNSLCRIKRNGHGSTVLDPD-PC------IYASLI--GNYIYYLHYDT--------------QTATSLYRIRI  136 (302)
T ss_dssp             -CCSSCCSEEEEEEETTSCCCEEEECS-CE------EEEEEE--TTEEEEEEESS--------------SSCEEEEEEET
T ss_pred             cceeccCCCeEEEEeCCCCcceEeecC-Cc------cEEEEe--CCEEEEEeecC--------------CCCceEEEEEC
Confidence                    2499999998776655432 11      244554  68999998210              12357999998


Q ss_pred             CCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181          187 RSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       187 ~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      ++...+.+.....    ++++++|+.||+++....+|++++++|.
T Consensus       137 dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          137 DGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             TSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred             CCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence            7655565554422    5678899999999988889999998863

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.49  E-value=5.7e-06  Score=82.13  Aligned_cols=153  Identities=15%  Similarity=0.070  Sum_probs=86.9

Q ss_pred             CcceEEEccCCCEEEEEeC-CC-----eEEEEECCCce-EEeeeecCCCCccccCCCcc----ccC---CCCC--Cceee
Q 048181           35 GGESIAFEPVGGAFYTGVA-DG-----RILKYQAPDGF-TDFAFTTPTRSKAVCDGTTN----LDL---GPIC--RRTFG   98 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~-~g-----~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~----~~~---~~~~--~~P~G   98 (310)
                      .+.+++|.+||+.+++... ++     .|+.++.+++. ..+.. ....   ..+|...    ...   ....  .....
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-SKVV---LPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-GGGT---C--------------------CCEESCC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccc-hhhc---ccccccccchhhhhhhhhhhccccCcce
Confidence            5778999999985555444 66     89999987543 22211 0000   0000000    000   0000  11356


Q ss_pred             EEEecCCCe-EEEEeCCCcEEEEeCCCC---eEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeee
Q 048181           99 LALHYATRQ-LYIADAYSGLLVVGPNGR---LATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        99 la~d~~~g~-LyVad~~~gi~~id~~~~---~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~  173 (310)
                      ++++ ++|+ |+++.. ..|+.+|.+++   +...+...     -.....++++|+ |+ |.++.               
T Consensus       114 ~~~S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~-----~~~~~~~~~SPD-G~~la~~~---------------  170 (741)
T 2ecf_A          114 YQWS-PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG-----EGFATDAKLSPK-GGFVSFIR---------------  170 (741)
T ss_dssp             CEEC-TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS-----SSCEEEEEECTT-SSEEEEEE---------------
T ss_pred             eEEC-CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccC-----CcccccccCCCC-CCEEEEEe---------------
Confidence            7887 5665 555544 56999998877   54433211     123578999995 65 44442               


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCC-----------------CCceeEEccCCCEEEEEec
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLT-----------------GPAGVAISVDSSFLLVSEF  218 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~-----------------~pnGIa~~~dg~~Lyv~d~  218 (310)
                          ++.|+.+|..+++...+...-.                 .+.+++|||||++|+++..
T Consensus       171 ----~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          171 ----GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             ----TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             ----CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence                1368888877776655433211                 2578999999998888754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.49  E-value=0.00019  Score=64.12  Aligned_cols=183  Identities=12%  Similarity=0.113  Sum_probs=116.2

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-eC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-DA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d~  113 (310)
                      ....++|.|+|..+++...++.|..++...+.......                  ........+++. ++|+++++ ..
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~------------------~~~~~v~~~~~s-pdg~~lasg~~  184 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD------------------TRGKFILSIAYS-PDGKYLASGAI  184 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE------------------CSSSCEEEEEEC-TTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec------------------CCCceEEEEEEC-CCCCEEEEEcC
Confidence            45579999999988888889999988876443222110                  112345678997 56766554 33


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ...|..+|..+++......   + .-...+.++++|+ |+++++-..                 +|.|..+|..+++...
T Consensus       185 dg~i~iwd~~~~~~~~~~~---~-h~~~v~~l~~spd-~~~l~s~s~-----------------dg~i~iwd~~~~~~~~  242 (321)
T 3ow8_A          185 DGIINIFDIATGKLLHTLE---G-HAMPIRSLTFSPD-SQLLVTASD-----------------DGYIKIYDVQHANLAG  242 (321)
T ss_dssp             TSCEEEEETTTTEEEEEEC---C-CSSCCCEEEECTT-SCEEEEECT-----------------TSCEEEEETTTCCEEE
T ss_pred             CCeEEEEECCCCcEEEEEc---c-cCCceeEEEEcCC-CCEEEEEcC-----------------CCeEEEEECCCcceeE
Confidence            4448888988776432221   1 1224578999994 877776432                 4678888876665443


Q ss_pred             ee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce-ee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          194 LL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF-DI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       194 ~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~-~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .. ..-.....++|+|++++ +++-...+.|..+++..   +.. .. .+-.+....+++.+  +|...++...
T Consensus       243 ~~~~h~~~v~~~~~sp~~~~-l~s~s~D~~v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~--~g~~l~s~~~  310 (321)
T 3ow8_A          243 TLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGT---RTCVHTFFDHQDQVWGVKYNG--NGSKIVSVGD  310 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECT--TSSEEEEEET
T ss_pred             EEcCCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCC---CEEEEEEcCCCCcEEEEEECC--CCCEEEEEeC
Confidence            33 23334678999999985 55666778888888753   221 11 22233456788888  8876665544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.47  E-value=0.0003  Score=64.44  Aligned_cols=206  Identities=11%  Similarity=0.053  Sum_probs=122.1

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-EeCC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADAY  114 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~~  114 (310)
                      ..+++|.++|.++++...++.|..++...+......                  .........+++. ++++.++ +...
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~------------------~~h~~~v~~~~~~-p~~~~l~s~s~d  186 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL------------------QGHEQDIYSLDYF-PSGDKLVSGSGD  186 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE------------------ccCCCCEEEEEEc-CCCCEEEEecCC
Confidence            458999999998888888999999998754322111                  1122345678887 5565544 4444


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL  194 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~  194 (310)
                      ..|..+|..+++....... .    .....+++++.+|+++++-..                 +|.+..+|..+++....
T Consensus       187 ~~v~iwd~~~~~~~~~~~~-~----~~v~~~~~~~~~~~~l~~~s~-----------------d~~v~iwd~~~~~~~~~  244 (393)
T 1erj_A          187 RTVRIWDLRTGQCSLTLSI-E----DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVER  244 (393)
T ss_dssp             SEEEEEETTTTEEEEEEEC-S----SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEE
T ss_pred             CcEEEEECCCCeeEEEEEc-C----CCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCcEEEe
Confidence            4477788887764332221 1    234578888744776665432                 36677777766554322


Q ss_pred             e--------cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCC---------Cceee--ecCCCCCceeeeCCCCC
Q 048181          195 L--------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA---------NSFDI--INFQAKPHNIKRNPGLL  255 (310)
Q Consensus       195 ~--------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~---------g~~~~--~~l~g~Pdgl~~d~~~d  255 (310)
                      .        ..-.....++|+|||++| ++-+..+.|..+++.....         +....  .+-......+++.+  +
T Consensus       245 ~~~~~~~~~~h~~~v~~v~~~~~g~~l-~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~  321 (393)
T 1erj_A          245 LDSENESGTGHKDSVYSVVFTRDGQSV-VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--N  321 (393)
T ss_dssp             EC------CCCSSCEEEEEECTTSSEE-EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG--G
T ss_pred             ecccccCCCCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC--C
Confidence            2        112235789999999854 5666788888888753211         11111  11122345678888  8


Q ss_pred             CcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCC
Q 048181          256 QTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEA  293 (310)
Q Consensus       256 G~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~  293 (310)
                      |.+.++....        ..+..+|. .|+.+..+....
T Consensus       322 ~~~l~sgs~D--------~~v~iwd~~~~~~~~~l~~h~  352 (393)
T 1erj_A          322 DEYILSGSKD--------RGVLFWDKKSGNPLLMLQGHR  352 (393)
T ss_dssp             GCEEEEEETT--------SEEEEEETTTCCEEEEEECCS
T ss_pred             CCEEEEEeCC--------CeEEEEECCCCeEEEEECCCC
Confidence            8766555443        25777774 577777666543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.46  E-value=0.00015  Score=64.47  Aligned_cols=186  Identities=10%  Similarity=0.030  Sum_probs=108.7

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-e
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-D  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d  112 (310)
                      ....+++|.++++++++...++.|..++...+......                   ........+++. ++++.+++ .
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------~~~~~v~~~~~~-~~~~~l~~~~  134 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW-------------------KSPVPVKRVEFS-PCGNYFLAIL  134 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-------------------ECSSCEEEEEEC-TTSSEEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-------------------ecCCCeEEEEEc-cCCCEEEEec
Confidence            45678999999998888888999999997744322110                   122346678887 55555444 3


Q ss_pred             CC-----CcEEEEeCCCCe----EEEeecc-----CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          113 AY-----SGLLVVGPNGRL----ATQLATG-----AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       113 ~~-----~gi~~id~~~~~----~~~~~~~-----~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      ..     ..|..++...+.    .......     ...........++++++ |+.+++-.                 .+
T Consensus       135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-----------------~d  196 (369)
T 3zwl_B          135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK-GKYIIAGH-----------------KD  196 (369)
T ss_dssp             CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG-GCEEEEEE-----------------TT
T ss_pred             CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC-CCEEEEEc-----------------CC
Confidence            33     335555543321    1110000     00001124667888884 66555432                 24


Q ss_pred             ceEEEEcCCC-CeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCC
Q 048181          179 GRLLSYNPRS-SQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLL  255 (310)
Q Consensus       179 G~l~~~d~~~-g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~d  255 (310)
                      |.|..+|..+ ++..... ..-.....++|+|+++.|+ +-+..+.|..+++..   +.... .........+++++  +
T Consensus       197 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~--~  270 (369)
T 3zwl_B          197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI-TSSRDTNSFLVDVST---LQVLKKYETDCPLNTAVITP--L  270 (369)
T ss_dssp             SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTT---CCEEEEEECSSCEEEEEECS--S
T ss_pred             CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE-EecCCceEEEEECCC---CceeeeecCCCCceeEEecC--C
Confidence            7888888876 4433323 2334568999999998654 446678899998753   22211 22333456788888  8


Q ss_pred             CcEEEEEe
Q 048181          256 QTFWEAAI  263 (310)
Q Consensus       256 G~l~va~~  263 (310)
                      |.+.++..
T Consensus       271 ~~~l~~~~  278 (369)
T 3zwl_B          271 KEFIILGG  278 (369)
T ss_dssp             SSEEEEEE
T ss_pred             CceEEEee
Confidence            87655443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.46  E-value=2.4e-05  Score=72.78  Aligned_cols=153  Identities=14%  Similarity=0.124  Sum_probs=99.5

Q ss_pred             CcceEEEccCCC-EEEEEeC--CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EE
Q 048181           35 GGESIAFEPVGG-AFYTGVA--DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LY  109 (310)
Q Consensus        35 ~Pegia~d~~G~-l~~~d~~--~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-Ly  109 (310)
                      ...+++|.|+|+ ++|+...  +.+|+.++..++. ..+.                    ........+++. ++|+ |+
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~--------------------~~~~~~~~~~~s-pdg~~l~  282 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--------------------DGRSNNTEPTWF-PDSQNLA  282 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC--------------------CCSSCEEEEEEC-TTSSEEE
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCc--------------------CCCCcccceEEC-CCCCEEE
Confidence            467899999998 4446544  3459999877543 2211                    112345678886 5665 65


Q ss_pred             EEeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181          110 IADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       110 Vad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                      ++....   .|+.+|.++++.+.+..  .+   .....++++|+ |+ |+++...               .....|+.+|
T Consensus       283 ~~s~~~g~~~i~~~d~~~~~~~~l~~--~~---~~~~~~~~spd-G~~l~~~~~~---------------~g~~~i~~~d  341 (415)
T 2hqs_A          283 FTSDQAGRPQVYKVNINGGAPQRITW--EG---SQNQDADVSSD-GKFMVMVSSN---------------GGQQHIAKQD  341 (415)
T ss_dssp             EEECTTSSCEEEEEETTSSCCEECCC--SS---SEEEEEEECTT-SSEEEEEEEC---------------SSCEEEEEEE
T ss_pred             EEECCCCCcEEEEEECCCCCEEEEec--CC---CcccCeEECCC-CCEEEEEECc---------------CCceEEEEEE
Confidence            554322   48999998876554421  11   23457899995 65 5554321               1235799999


Q ss_pred             CCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC--eEEEEEecC
Q 048181          186 PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN--RTLKYWLRG  230 (310)
Q Consensus       186 ~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~~  230 (310)
                      ..+++.+.+.... ....++|+|||+.|+++....+  .|+.+++++
T Consensus       342 ~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          342 LATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             TTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             CCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence            9888876655443 6789999999998888766555  788888764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.46  E-value=0.00049  Score=61.66  Aligned_cols=204  Identities=9%  Similarity=-0.038  Sum_probs=124.5

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCce---EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGF---TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ...+++|.++|+++++...++.|..++.....   .....                 +.........+++. +++.++.+
T Consensus        99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~-----------------~~~h~~~v~~~~~~-~~~~l~s~  160 (340)
T 1got_B           99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE-----------------LAGHTGYLSCCRFL-DDNQIVTS  160 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE-----------------EECCSSCEEEEEEE-ETTEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEE-----------------ecCCCccEEEEEEC-CCCcEEEE
Confidence            45678899999988888888888888765321   11100                 00112234466775 57777666


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      .....|..+|..+++......   + +-...+.++++| +++++++-..                 +|.+..+|..+++.
T Consensus       161 s~d~~i~~wd~~~~~~~~~~~---~-h~~~v~~~~~~~-~~~~l~sg~~-----------------d~~v~~wd~~~~~~  218 (340)
T 1got_B          161 SGDTTCALWDIETGQQTTTFT---G-HTGDVMSLSLAP-DTRLFVSGAC-----------------DASAKLWDVREGMC  218 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC---C-CSSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTTCSE
T ss_pred             ECCCcEEEEECCCCcEEEEEc---C-CCCceEEEEECC-CCCEEEEEeC-----------------CCcEEEEECCCCee
Confidence            655558888988765432221   1 123457899999 4887776432                 46788888776654


Q ss_pred             EEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeee---cCCCCCceeeeCCCCCCcEEEEEecCCC
Q 048181          192 TVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII---NFQAKPHNIKRNPGLLQTFWEAAIITRQ  267 (310)
Q Consensus       192 ~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~---~l~g~Pdgl~~d~~~dG~l~va~~~~~~  267 (310)
                      .... ..-...+.++|+|+++. +++-+..+.|..+++...  ......   ........+++++  +|.+.++....+ 
T Consensus       219 ~~~~~~h~~~v~~v~~~p~~~~-l~s~s~d~~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~d~-  292 (340)
T 1got_B          219 RQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRAD--QELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDF-  292 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECT--TSSEEEEEETTS-
T ss_pred             EEEEcCCcCCEEEEEEcCCCCE-EEEEcCCCcEEEEECCCC--cEEEEEccCCcccceEEEEECC--CCCEEEEECCCC-
Confidence            4333 23345689999999984 556667888888887532  111111   1112345688898  998777765542 


Q ss_pred             CCCCCceeeEEECC-CCcEEEEEec
Q 048181          268 PAGTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       268 ~~~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                             .+..+|. .++.+..+..
T Consensus       293 -------~i~vwd~~~~~~~~~~~~  310 (340)
T 1got_B          293 -------NCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             -------EEEEEETTTCCEEEEEEC
T ss_pred             -------eEEEEEcccCcEeeEeec
Confidence                   5666663 4555555543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.46  E-value=3.3e-05  Score=71.87  Aligned_cols=189  Identities=14%  Similarity=0.115  Sum_probs=113.7

Q ss_pred             cceEEEcc-CCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           36 GESIAFEP-VGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        36 Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      -.+++|.| +++++.++..+|.|.-++.+.+ ...+..                 .......-..|++.+.+++++++-.
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            56899998 5678888999999999987633 211110                 0011223458999754666655544


Q ss_pred             CCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 YSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ..+ |...|.+++....+... .. .......++++++ |.++++-..                 +|.|..+|..+..+.
T Consensus       185 ~D~~v~iwd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~~~l~~g~~-----------------dg~i~~wd~~~~~~~  244 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRVFASS-DT-INIWFCSLDVSAS-SRMVVTGDN-----------------VGNVILLNMDGKELW  244 (435)
T ss_dssp             SSSCEEEEETTSCEEEEEECC-SS-CSCCCCCEEEETT-TTEEEEECS-----------------SSBEEEEESSSCBCC
T ss_pred             CCCEEEEeeccCCceeEEecc-CC-CCccEEEEEECCC-CCEEEEEeC-----------------CCcEeeeccCcceeE
Confidence            434 77788887665544322 11 1123457889994 777666432                 467888887644433


Q ss_pred             EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .+...-..-+.|+|+|+++.++++-...+.|..+++.... ....+   ..-......+++++  +|++.++...
T Consensus       245 ~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~sp--dg~~l~s~~~  316 (435)
T 4e54_B          245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR-GKASFLYSLPHRHPVNAACFSP--DGARLLTTDQ  316 (435)
T ss_dssp             CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC-SSSCCSBCCBCSSCEEECCBCT--TSSEEEEEES
T ss_pred             EEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc-ccceEEEeeeccccccceeECC--CCCeeEEEcC
Confidence            3322233458899999998788887788888888875422 11111   11112245677787  8876555443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.45  E-value=2.3e-05  Score=71.15  Aligned_cols=158  Identities=11%  Similarity=0.040  Sum_probs=91.6

Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee-eEEEecCCCeEEEEe----
Q 048181           38 SIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF-GLALHYATRQLYIAD----  112 (310)
Q Consensus        38 gia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~-Gla~d~~~g~LyVad----  112 (310)
                      +++|.|||..++....++.|+.++.+++........                 +...... ...++ .+++++++.    
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~-----------------~~~~~~~~~~~~~-~dg~~l~~~~~~~  146 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV-----------------PAEWVGYGTWVAN-SDCTKLVGIEIRR  146 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-----------------CTTEEEEEEEEEC-TTSSEEEEEEEEG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec-----------------hhhcccccceeEC-CCCCeeccccccC
Confidence            678999998666655678899999885532211100                 1111111 12334 566665531    


Q ss_pred             -------------------CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeC-CCCeEEEEcCCCccCccceeEee
Q 048181          113 -------------------AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQ-GTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus       113 -------------------~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~-~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                                         ....|+.+|.++++.+.+....     ...++++++| ++..|.++.....          
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~~~~~~sp~dg~~l~~~~~~~~----------  211 (388)
T 3pe7_A          147 EDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-----QWLGHPIYRPYDDSTVAFCHEGPH----------  211 (388)
T ss_dssp             GGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-----SCEEEEEEETTEEEEEEEEECSCT----------
T ss_pred             cccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-----ccccccEECCCCCCEEEEEEecCC----------
Confidence                               1134899999988776654321     2357889999 7334544432210          


Q ss_pred             eecCCCceEEEEcCCCCeEEEeecCCC--CCceeEEccCCCEE-EEEecCCC---eEEEEEecC
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLLRNLT--GPAGVAISVDSSFL-LVSEFTGN---RTLKYWLRG  230 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~--~pnGIa~~~dg~~L-yv~d~~~~---~I~~~~~~~  230 (310)
                        .....+|+.+|.++++.+.+.....  ....++|+|||+.| |++.....   .|+.+++++
T Consensus       212 --~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (388)
T 3pe7_A          212 --DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET  273 (388)
T ss_dssp             --TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred             --CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC
Confidence              0123579999987666665544321  23467999999977 44543332   388998864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.45  E-value=2.9e-05  Score=77.00  Aligned_cols=198  Identities=10%  Similarity=-0.016  Sum_probs=108.8

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCc---eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEE
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDG---FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIA  111 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVa  111 (310)
                      ..+++|.|||+.+++.. ++.|+.++.+++   ...                   .+.........+++. ++|+ |+++
T Consensus       111 v~~~~~SpDg~~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~l~~~~~~~~~~~~S-PDG~~la~~  169 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPL-GGELYLYDLKQEGKAAVR-------------------QLTHGEGFATDAKLS-PKGGFVSFI  169 (741)
T ss_dssp             SCCCEECTTSSEEEEEE-TTEEEEEESSSCSTTSCC-------------------BCCCSSSCEEEEEEC-TTSSEEEEE
T ss_pred             cceeEECCCCCEEEEEe-CCcEEEEECCCCCcceEE-------------------EcccCCcccccccCC-CCCCEEEEE
Confidence            46889999998555544 389999987754   211                   011222356788997 5666 4444


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCC------------ccccCccceEEeCCCCeEEEEcCCCc-cCc--------cceeE
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEG------------QAFHFLDGLDVDQGTGVVYFTDASGV-YDF--------RTIVK  170 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g------------~~~~~pndvavd~~~G~lyvtd~~~~-~~~--------~~~~~  170 (310)
                      . ...|+.+|.++++...+......            ..+..+.+++++|++..|+++..... ...        .....
T Consensus       170 ~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~  248 (741)
T 2ecf_A          170 R-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDV  248 (741)
T ss_dssp             E-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred             e-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence            3 34699999988876654322111            01223578999996334666532110 000        00000


Q ss_pred             eeeecC------CCceEEEEcCCC-CeEEEeec---CCCCCceeEEccCCCEEEEEec----CCCeEEEEEecCCCCCce
Q 048181          171 LNITND------STGRLLSYNPRS-SQVTVLLR---NLTGPAGVAISVDSSFLLVSEF----TGNRTLKYWLRGPRANSF  236 (310)
Q Consensus       171 ~~~~~~------~~G~l~~~d~~~-g~~~~~~~---~l~~pnGIa~~~dg~~Lyv~d~----~~~~I~~~~~~~~~~g~~  236 (310)
                      ......      ..-+|+.+|..+ ++...+..   .-.....++| |||++|+++..    ....|+.+++.+   +..
T Consensus       249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~---g~~  324 (741)
T 2ecf_A          249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS---NQQ  324 (741)
T ss_dssp             EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT---CCE
T ss_pred             eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC---Cce
Confidence            000000      112788899887 76655432   1234578999 99998887754    235688887754   222


Q ss_pred             e-e--ecCCC---CCceeeeCCCCCCcEEEE
Q 048181          237 D-I--INFQA---KPHNIKRNPGLLQTFWEA  261 (310)
Q Consensus       237 ~-~--~~l~g---~Pdgl~~d~~~dG~l~va  261 (310)
                      . +  ....+   ....+++.+  ||+++++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~sp--dg~~~~~  353 (741)
T 2ecf_A          325 RVLAHETSPTWVPLHNSLRFLD--DGSILWS  353 (741)
T ss_dssp             EEEEEEECSSCCCCCSCCEECT--TSCEEEE
T ss_pred             EEEEEcCCCCcCCcCCceEECC--CCeEEEE
Confidence            2 1  11111   124677777  7764433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.43  E-value=1.6e-05  Score=72.44  Aligned_cols=143  Identities=13%  Similarity=0.198  Sum_probs=92.8

Q ss_pred             eEEE-EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCC---CC----eEEEEcCC--CccCccceeEeeeecC
Q 048181          107 QLYI-ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG---TG----VVYFTDAS--GVYDFRTIVKLNITND  176 (310)
Q Consensus       107 ~LyV-ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~---~G----~lyvtd~~--~~~~~~~~~~~~~~~~  176 (310)
                      .+++ ++...++.++|+++..+..+.       ...+|++.+-+.   +|    .+|+|+..  .+              
T Consensus        41 s~ii~t~k~~gL~Vydl~G~~l~~~~-------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n--------------   99 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDGKMLHSYN-------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKN--------------   99 (355)
T ss_dssp             CEEEEEETTTEEEEEETTSCEEEEEC-------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCC--------------
T ss_pred             cEEEEEcCCCCEEEEcCCCcEEEEcc-------CCCcccEEEecccccCCceEeEEEEeCCCCCCC--------------
Confidence            3444 555667999999765554431       134677777661   01    34666643  21              


Q ss_pred             CCceEEEEcCCCCeEEEee-------cCCCCCceeEE--ccCCC--EEEEEecCCCeEEEEEecCCCCCce--ee---ec
Q 048181          177 STGRLLSYNPRSSQVTVLL-------RNLTGPAGVAI--SVDSS--FLLVSEFTGNRTLKYWLRGPRANSF--DI---IN  240 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~-------~~l~~pnGIa~--~~dg~--~Lyv~d~~~~~I~~~~~~~~~~g~~--~~---~~  240 (310)
                       .=++|.+|+.+++++.+.       ..+..|.|||+  +++++  ++||++.. +++..|.+.....|..  ++   ..
T Consensus       100 -~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A          100 -TIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             -EEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             -eEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEec
Confidence             114577788887777662       34578999999  77543  57777765 7998888753222322  22   45


Q ss_pred             CCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC
Q 048181          241 FQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF  282 (310)
Q Consensus       241 l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~  282 (310)
                      +++-|-|+.+|++ .|.||++....         .+.+|+++
T Consensus       178 lgsq~EgcvvDd~-~g~Lyv~eEd~---------GIw~~da~  209 (355)
T 3amr_A          178 MNSQTEGMAADDE-YGRLYIAEEDE---------AIWKFSAE  209 (355)
T ss_dssp             CSSCEEEEEEETT-TTEEEEEETTT---------EEEEEECS
T ss_pred             CCCCcceEEEcCC-CCeEEEecccc---------eEEEEeCC
Confidence            6677999999964 78999999985         48888844

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.42  E-value=0.00036  Score=63.81  Aligned_cols=193  Identities=15%  Similarity=0.087  Sum_probs=113.8

Q ss_pred             CCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEE-
Q 048181           34 FGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYI-  110 (310)
Q Consensus        34 ~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyV-  110 (310)
                      ....+++|.+ +++++++...++.|..++...+.......       .+    ...+.........++++ +++ ++++ 
T Consensus        82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-------~~----~~~~~~h~~~v~~~~~~-p~~~~~l~s  149 (402)
T 2aq5_A           82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-------EP----VITLEGHTKRVGIVAWH-PTAQNVLLS  149 (402)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-------SC----SEEEECCSSCEEEEEEC-SSBTTEEEE
T ss_pred             CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-------Cc----eEEecCCCCeEEEEEEC-cCCCCEEEE
Confidence            3467899999 89989999889999988866431000000       00    00011122345688997 554 4555 


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      +.....|..+|..+++....... .+ .-.....++++++ |+.+++-.                 .+|.|..+|..+++
T Consensus       150 ~~~dg~i~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~-~~~l~~~~-----------------~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          150 AGCDNVILVWDVGTGAAVLTLGP-DV-HPDTIYSVDWSRD-GALICTSC-----------------RDKRVRVIEPRKGT  209 (402)
T ss_dssp             EETTSCEEEEETTTTEEEEEECT-TT-CCSCEEEEEECTT-SSCEEEEE-----------------TTSEEEEEETTTTE
T ss_pred             EcCCCEEEEEECCCCCccEEEec-CC-CCCceEEEEECCC-CCEEEEEe-----------------cCCcEEEEeCCCCc
Confidence            44444588889887754332210 11 1234678999994 76665532                 24788889987776


Q ss_pred             EEEee-cCCC--CCceeEEccCCCEEEEEe--cCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEE
Q 048181          191 VTVLL-RNLT--GPAGVAISVDSSFLLVSE--FTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWE  260 (310)
Q Consensus       191 ~~~~~-~~l~--~pnGIa~~~dg~~Lyv~d--~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~v  260 (310)
                      ..... ..-.  .+..++++++++.|++..  ...+.|..+++.......... .........+++++  +|++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~  283 (402)
T 2aq5_A          210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP--DTNIVY  283 (402)
T ss_dssp             EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEET--TTTEEE
T ss_pred             eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcC--CCCEEE
Confidence            54433 2222  368999999987554442  567889999886432111111 12223466788888  886553

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.42  E-value=7e-05  Score=68.25  Aligned_cols=193  Identities=8%  Similarity=0.028  Sum_probs=111.3

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCC---ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPD---GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ...+++|.++|.++++...++.|..++...   +......                 +.........+++.+.+++++++
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~-----------------~~~h~~~v~~~~~~~~~~~~l~s  131 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR-----------------FSNHSSSVKTVKFNAKQDNVLAS  131 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEE-----------------CCCSSSCCCEEEECSSSTTBEEE
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhh-----------------ccCCccceEEEEEcCCCCCEEEE
Confidence            456899999999888888889999888764   1111110                 11122345678997432555555


Q ss_pred             eCC-CcEEEEeCCCCe------EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          112 DAY-SGLLVVGPNGRL------ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       112 d~~-~gi~~id~~~~~------~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      -.. ..|..+|..+++      .........+ .......++++++++.++++-..                 +|.|..+
T Consensus       132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~v~iw  193 (416)
T 2pm9_A          132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAGS-----------------SNFASIW  193 (416)
T ss_dssp             ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEESS-----------------SSCEEEE
T ss_pred             EcCCCeEEEEECCCCccccccccccccccccC-CCCCeeEEEeCCCCCcEEEEEcC-----------------CCCEEEE
Confidence            443 347778877654      1111111111 22346789999853566666432                 4678888


Q ss_pred             cCCCCeEEEeecC-------CCCCceeEEccCCCEEEEEecCCC---eEEEEEecCCCCCceeee-cCCCCCceeeeCCC
Q 048181          185 NPRSSQVTVLLRN-------LTGPAGVAISVDSSFLLVSEFTGN---RTLKYWLRGPRANSFDII-NFQAKPHNIKRNPG  253 (310)
Q Consensus       185 d~~~g~~~~~~~~-------l~~pnGIa~~~dg~~Lyv~d~~~~---~I~~~~~~~~~~g~~~~~-~l~g~Pdgl~~d~~  253 (310)
                      |..+++.......       -...+.++|+|++..++++-...+   .|..+++.....-...+. ........+++.+.
T Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (416)
T 2pm9_A          194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ  273 (416)
T ss_dssp             ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS
T ss_pred             ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC
Confidence            8877665443332       345689999999865666666666   888888864211111112 22334566777641


Q ss_pred             CCCcEEEEEe
Q 048181          254 LLQTFWEAAI  263 (310)
Q Consensus       254 ~dG~l~va~~  263 (310)
                       +|++.++..
T Consensus       274 -~~~~l~s~~  282 (416)
T 2pm9_A          274 -DEHLLLSSG  282 (416)
T ss_dssp             -CSSCEEEEE
T ss_pred             -CCCeEEEEe
Confidence             344444433

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.41  E-value=6.8e-05  Score=67.91  Aligned_cols=216  Identities=10%  Similarity=-0.038  Sum_probs=117.7

Q ss_pred             EEEccCCC-EEEEEeCCC--eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCce-eeEEEecCCCeEEEEeCC
Q 048181           39 IAFEPVGG-AFYTGVADG--RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT-FGLALHYATRQLYIADAY  114 (310)
Q Consensus        39 ia~d~~G~-l~~~d~~~g--~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P-~Gla~d~~~g~LyVad~~  114 (310)
                      ++|.|||+ ++|+...++  +|+.++.+++......                   ...... .+.++.+.+..|+++...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-------------------~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-------------------EGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-------------------CSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-------------------eCCCCCccceEEcCCCCEEEEEeCC
Confidence            68999997 555554345  5999998765432110                   111111 245786434457777665


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCc--cCc-cce--eEeeeecCCCceEEEEcCCCC
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGV--YDF-RTI--VKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~--~~~-~~~--~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      ..|+.+|.++++.+.+.....+  ........+++ +|+.++.-....  +.. ..+  ............|+++|..++
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAE--WVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTT--EEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             CeEEEEECCCCcceeeeechhh--cccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence            5699999998876655432211  11111223467 476665321000  000 000  000011234578999999888


Q ss_pred             eEEEeecCCCCCceeEEcc-CCCEEEEEecC-----CCeEEEEEecCCCCCceeeecCC-C-CCceeeeCCCCCCc-E-E
Q 048181          190 QVTVLLRNLTGPAGVAISV-DSSFLLVSEFT-----GNRTLKYWLRGPRANSFDIINFQ-A-KPHNIKRNPGLLQT-F-W  259 (310)
Q Consensus       190 ~~~~~~~~l~~pnGIa~~~-dg~~Lyv~d~~-----~~~I~~~~~~~~~~g~~~~~~l~-g-~Pdgl~~d~~~dG~-l-~  259 (310)
                      +.+.+...-...+.++++| ||+.|+++...     ..+|+.++.++..  ...+.... + .....++++  ||+ | |
T Consensus       179 ~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~sp--dg~~l~~  254 (388)
T 3pe7_A          179 ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVP--DGSALVY  254 (388)
T ss_dssp             CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECT--TSSCEEE
T ss_pred             ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECC--CCCEEEE
Confidence            8887776655678999999 99877665543     4589999886531  11121111 1 123467888  886 5 4


Q ss_pred             EEEecCCCCCCCCceeeEEECCC-CcE
Q 048181          260 EAAIITRQPAGTPVPIGQRISAF-GAV  285 (310)
Q Consensus       260 va~~~~~~~~~~~~~~v~~~~~~-G~~  285 (310)
                      ++......     ...+.++|.+ |+.
T Consensus       255 ~~~~~~~~-----~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          255 VSYLKGSP-----DRFIYSADPETLEN  276 (388)
T ss_dssp             EEEETTCC-----CEEEEEECTTTCCE
T ss_pred             EecCCCCC-----cceEEEEecCCCce
Confidence            44433320     1236677754 443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.40  E-value=0.00013  Score=66.72  Aligned_cols=192  Identities=9%  Similarity=0.028  Sum_probs=119.3

Q ss_pred             CCcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-E
Q 048181           34 FGGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-A  111 (310)
Q Consensus        34 ~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-a  111 (310)
                      ....+++|.++| +++++...++.|..++...+.......                ..........++++ +++++++ +
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------~~~~~~~v~~~~~~-~~~~~l~~~  194 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG----------------PDVHPDTIYSVDWS-RDGALICTS  194 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC----------------TTTCCSCEEEEEEC-TTSSCEEEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe----------------cCCCCCceEEEEEC-CCCCEEEEE
Confidence            456789999998 688888889999999977543221110                00122345689997 4665444 4


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      .....|..+|..+++......  .+..-..+..+++++ +|+++++...              ...+|.|..+|..+++.
T Consensus       195 ~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          195 CRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVS-EGKILTTGFS--------------RMSERQVALWDTKHLEE  257 (402)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECS-TTEEEEEEEC--------------TTCCEEEEEEETTBCSS
T ss_pred             ecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcC-CCcEEEEecc--------------CCCCceEEEEcCccccC
Confidence            444458888988765433221  111112357889999 4888776411              01246788888765432


Q ss_pred             --E-EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecC--CCCCceeeeCCCCCCcEEEE
Q 048181          192 --T-VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINF--QAKPHNIKRNPGLLQTFWEA  261 (310)
Q Consensus       192 --~-~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l--~g~Pdgl~~d~~~dG~l~va  261 (310)
                        . .....-.....++++||++.|+++-...+.|..|++.....-...+...  .+...++++.+  +|.+.++
T Consensus       258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp--~~~~~~s  330 (402)
T 2aq5_A          258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP--KRGLEVN  330 (402)
T ss_dssp             CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC--GGGSCGG
T ss_pred             CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec--cccccee
Confidence              1 1223334578999999999998888888999999987532101122222  24567888888  8766543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.40  E-value=6.8e-05  Score=71.15  Aligned_cols=150  Identities=14%  Similarity=0.087  Sum_probs=82.0

Q ss_pred             ceeeEEEecCCCeEEEEeCC-----------------Cc-EEEEeCCCC------eE--------------EEeeccCCC
Q 048181           95 RTFGLALHYATRQLYIADAY-----------------SG-LLVVGPNGR------LA--------------TQLATGAEG  136 (310)
Q Consensus        95 ~P~Gla~d~~~g~LyVad~~-----------------~g-i~~id~~~~------~~--------------~~~~~~~~g  136 (310)
                      .-..|+++ ++|.|||+-..                 .+ |+||++++.      .+              +.++     
T Consensus       140 ~g~~l~fg-pDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-----  213 (463)
T 2wg3_C          140 LGGQLLFG-PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-----  213 (463)
T ss_dssp             CEEEEEEC-TTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-----
T ss_pred             cCCcEeEC-CCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-----
Confidence            34579997 79999998421                 12 999999873      11              1111     


Q ss_pred             ccccCccceEEeCCC----C--eEEEEcCCC-ccCccceeEeeeecCCCc---eEEEEcCCCCeEEEeecCCCCCceeEE
Q 048181          137 QAFHFLDGLDVDQGT----G--VVYFTDASG-VYDFRTIVKLNITNDSTG---RLLSYNPRSSQVTVLLRNLTGPAGVAI  206 (310)
Q Consensus       137 ~~~~~pndvavd~~~----G--~lyvtd~~~-~~~~~~~~~~~~~~~~~G---~l~~~d~~~g~~~~~~~~l~~pnGIa~  206 (310)
                      ..+..|.++++|+++    |  .+|.+|... .+.. +.+..+.+....|   -++.+.+.         .-..|.|++|
T Consensus       214 ~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~-~ei~~i~~G~~yG~~~P~~~~~~~---------~g~Ap~G~~~  283 (463)
T 2wg3_C          214 HGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSS-ARILQIIKGKDYESEPSLLEFKPF---------SNGPLVGGFV  283 (463)
T ss_dssp             ECCSSCCBEEEESSCSSTTCSEEEEEECC------C-EEEEEEC----CCSCCCCEECCC-------------CEEEEEE
T ss_pred             ECCCCcceEEECCCCCCcccceEEEecccCCCCCCC-CeEeeeccCCCCCCCCCeEEeeCC---------CCccccceEE
Confidence            135679999999964    4  678898632 1111 1111111111111   11222110         0035678887


Q ss_pred             ccC-------CCEEEEEecCCCeEEEEEecCCCCC-ceeee----------cCCCCCceeeeCCCCCCcEEEEEec
Q 048181          207 SVD-------SSFLLVSEFTGNRTLKYWLRGPRAN-SFDII----------NFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       207 ~~d-------g~~Lyv~d~~~~~I~~~~~~~~~~g-~~~~~----------~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      -..       |+ +|+++.. ++|+++.++..... ..+..          ...+.|-++++++  ||.|||+...
T Consensus       284 Y~G~~fP~~~g~-~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~p--dG~Lyv~~~~  355 (463)
T 2wg3_C          284 YRGCQSERLYGS-YVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDE--LGEVYILSSS  355 (463)
T ss_dssp             CCCSSCTTTTTC-EEEEETT-SCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECT--TCCEEEEEES
T ss_pred             EeCCCChhhcce-EEEecCC-CcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECC--CCCEEEEecc
Confidence            542       33 7888886 78999988653211 11111          1235689999999  9999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.38  E-value=7.1e-05  Score=67.87  Aligned_cols=185  Identities=10%  Similarity=0.031  Sum_probs=112.8

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-eC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-DA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d~  113 (310)
                      .-.+++|.++|+++++...++.|..++...+......                  .........+++.+.+..++++ ..
T Consensus       129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~------------------~~h~~~V~~~~~~~~~~~~l~s~s~  190 (344)
T 4gqb_B          129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY------------------RAHAAQVTCVAASPHKDSVFLSCSE  190 (344)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE------------------cCcCCceEEEEecCCCCCceeeecc
Confidence            4568999999998888889999999998754322111                  0112344578886434456664 33


Q ss_pred             CCcEEEEeCCCCeEE-EeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 YSGLLVVGPNGRLAT-QLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~~gi~~id~~~~~~~-~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ...|..+|..+++.. .+....   .-...+.+++++++++++++-.                 .+|.|..+|..+++..
T Consensus       191 D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~l~sg~-----------------~dg~v~~wd~~~~~~~  250 (344)
T 4gqb_B          191 DNRILLWDTRCPKPASQIGCSA---PGYLPTSLAWHPQQSEVFVFGD-----------------ENGTVSLVDTKSTSCV  250 (344)
T ss_dssp             TSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEESCC--CC
T ss_pred             ccccccccccccceeeeeecce---eeccceeeeecCCCCcceEEec-----------------cCCcEEEEECCCCcEE
Confidence            444778888766532 221111   1234567888886567766533                 2467888887766533


Q ss_pred             -EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-eecCCCCCceeeeCCCCCCc-EEEEE
Q 048181          193 -VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-IINFQAKPHNIKRNPGLLQT-FWEAA  262 (310)
Q Consensus       193 -~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~~~dG~-l~va~  262 (310)
                       .+...-..-+.|+|+|||..++++-+..+.|+.++...   +... +.+-.+....+++.+  +|. +.++.
T Consensus       251 ~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~---~~~~~~~~H~~~V~~v~~sp--~~~~llas~  318 (344)
T 4gqb_B          251 LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL---SELFRSQAHRDFVRDATWSP--LNHSLLTTV  318 (344)
T ss_dssp             EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC---CEEEEECCCSSCEEEEEECS--SSTTEEEEE
T ss_pred             EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC---CcEEEEcCCCCCEEEEEEeC--CCCeEEEEE
Confidence             23333334589999999876777777788888887653   2221 122234467788888  775 55444

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.38  E-value=4.8e-05  Score=69.09  Aligned_cols=189  Identities=8%  Similarity=-0.046  Sum_probs=112.6

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ...+++|.++|+++++...++.|..++...+......                  .........+++.+.+..++++...
T Consensus       141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~------------------~~h~~~v~~v~~s~~~~~~~~s~~~  202 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY------------------NAHSSEVNCVAACPGKDTIFLSCGE  202 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEECTTCSSCEEEEET
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE------------------cCCCCCEEEEEEccCCCceeeeecc
Confidence            4568999999998888888999999998754332111                  1122345678886333345554333


Q ss_pred             -CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          115 -SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       115 -~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                       ..|..+|..+++.......  ...-..++.++++|+++.++++-.                 .++.|..+|..+++...
T Consensus       203 dg~v~~wd~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~~la~g~-----------------~d~~i~~wd~~~~~~~~  263 (357)
T 4g56_B          203 DGRILLWDTRKPKPATRIDF--CASDTIPTSVTWHPEKDDTFACGD-----------------ETGNVSLVNIKNPDSAQ  263 (357)
T ss_dssp             TSCEEECCTTSSSCBCBCCC--TTCCSCEEEEEECTTSTTEEEEEE-----------------SSSCEEEEESSCGGGCE
T ss_pred             CCceEEEECCCCceeeeeee--ccccccccchhhhhcccceEEEee-----------------cccceeEEECCCCcEeE
Confidence             3477778776543211111  111234578889886456665432                 23667778876655433


Q ss_pred             eecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-eecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          194 LLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-IINFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       194 ~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .... -..-+.|+|+|+++.++++-...+.|+.+++..   +... ..+-.+....+++.+. ||.+.++...
T Consensus       264 ~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~---~~~~~~~~H~~~V~~vafsP~-d~~~l~s~s~  332 (357)
T 4g56_B          264 TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF---SEVFRDLSHRDFVTGVAWSPL-DHSKFTTVGW  332 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS---CEEEEECCCSSCEEEEEECSS-STTEEEEEET
T ss_pred             EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC---CcEeEECCCCCCEEEEEEeCC-CCCEEEEEcC
Confidence            2322 234479999999876677777778888887653   2221 1222334567888731 5776665543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.35  E-value=0.00073  Score=61.83  Aligned_cols=181  Identities=12%  Similarity=0.014  Sum_probs=112.8

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ...+++|.++|.++++...+|.|..++...+......                  .........++++  ...|+.+...
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------------~~~~~~v~~~~~~--~~~l~~~~~d  195 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM------------------AGHQARVGCLSWN--RHVLSSGSRS  195 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------------------CCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe------------------cCCCCceEEEEEC--CCEEEEEcCC
Confidence            4678999999998888888899988887643221110                  1122344567775  3455555555


Q ss_pred             CcEEEEeCCC-Ce-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          115 SGLLVVGPNG-RL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       115 ~gi~~id~~~-~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ..|..+|... +. ...+ ..    .-.....++++++ |..+++-..                 +|.|..+|..+++..
T Consensus       196 g~i~i~d~~~~~~~~~~~-~~----~~~~v~~~~~~~~-~~~l~s~~~-----------------d~~v~iwd~~~~~~~  252 (401)
T 4aez_A          196 GAIHHHDVRIANHQIGTL-QG----HSSEVCGLAWRSD-GLQLASGGN-----------------DNVVQIWDARSSIPK  252 (401)
T ss_dssp             SEEEEEETTSSSCEEEEE-EC----CSSCEEEEEECTT-SSEEEEEET-----------------TSCEEEEETTCSSEE
T ss_pred             CCEEEEecccCcceeeEE-cC----CCCCeeEEEEcCC-CCEEEEEeC-----------------CCeEEEccCCCCCcc
Confidence            5577788763 22 2222 11    1234578999994 776665432                 467888887766544


Q ss_pred             Eee-cCCCCCceeEEccCCCEEEEEec--CCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEe
Q 048181          193 VLL-RNLTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       193 ~~~-~~l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                      ... ..-.....++++|++..++++-.  ..+.|..+++..   +.... .........+++.+  +|.+.++..
T Consensus       253 ~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~---~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~  322 (401)
T 4aez_A          253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---GARVNTVDAGSQVTSLIWSP--HSKEIMSTH  322 (401)
T ss_dssp             EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---CCEEEEEECSSCEEEEEECS--SSSEEEEEE
T ss_pred             EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---CCEEEEEeCCCcEEEEEECC--CCCeEEEEe
Confidence            333 33445689999999887888754  688999998763   22211 22233466788888  887666644

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.34  E-value=0.00017  Score=64.51  Aligned_cols=190  Identities=7%  Similarity=-0.096  Sum_probs=109.8

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE-EEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL-YIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L-yVa  111 (310)
                      ....+++|.++|+++++...++.|..++...+. .....                 ..........+++. ++++. +++
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----------------~~~~~~~v~~~~~~-~~~~~l~~~  114 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV-----------------ILRINRAARCVRWA-PNEKKFAVG  114 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE-----------------CCCCSSCEEEEEEC-TTSSEEEEE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE-----------------eecCCCceeEEEEC-CCCCEEEEE
Confidence            456789999999988888888988888765432 11110                 01223356688997 45554 445


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC-----
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP-----  186 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~-----  186 (310)
                      .....|..++.+.+...................++++++ ++.+++-..                 +|.+..+|.     
T Consensus       115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~-----------------dg~i~~~d~~~~~~  176 (372)
T 1k8k_C          115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN-SVLLAAGSC-----------------DFKCRIFSAYIKEV  176 (372)
T ss_dssp             ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT-SSEEEEEET-----------------TSCEEEEECCCTTT
T ss_pred             eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC-CCEEEEEcC-----------------CCCEEEEEcccccc
Confidence            444446555554433111111111111234678999994 766665332                 355666662     


Q ss_pred             -------------CCCeEEE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeC
Q 048181          187 -------------RSSQVTV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRN  251 (310)
Q Consensus       187 -------------~~g~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d  251 (310)
                                   .+++... +...-...+.++++|++++|+ +-...+.|..+++...  ..... ..-......++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          177 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA-WVSHDSTVCLADADKK--MAVATLASETLPLLAVTFI  253 (372)
T ss_dssp             SCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE-EEETTTEEEEEEGGGT--TEEEEEECSSCCEEEEEEE
T ss_pred             cccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE-EEeCCCEEEEEECCCC--ceeEEEccCCCCeEEEEEe
Confidence                         2233322 222334568999999998554 4557788999988642  11111 2222335778999


Q ss_pred             CCCCCcEEEEEec
Q 048181          252 PGLLQTFWEAAII  264 (310)
Q Consensus       252 ~~~dG~l~va~~~  264 (310)
                      +  +|.+.++...
T Consensus       254 ~--~~~~l~~~~d  264 (372)
T 1k8k_C          254 T--ESSLVAAGHD  264 (372)
T ss_dssp             E--TTEEEEEETT
T ss_pred             c--CCCEEEEEeC
Confidence            8  8987776633

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.34  E-value=0.00076  Score=61.69  Aligned_cols=204  Identities=9%  Similarity=-0.003  Sum_probs=120.8

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCC-ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPD-GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-  111 (310)
                      ....+++|+  ++++++...++.|..++... ......                  +........++++. ++++++++ 
T Consensus       177 ~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------~~~~~~~v~~~~~~-~~~~~l~s~  235 (401)
T 4aez_A          177 ARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGT------------------LQGHSSEVCGLAWR-SDGLQLASG  235 (401)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE------------------EECCSSCEEEEEEC-TTSSEEEEE
T ss_pred             CceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeE------------------EcCCCCCeeEEEEc-CCCCEEEEE
Confidence            345566673  56677777788888887652 211111                  01123356689997 56665554 


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      .....|..+|..+++.......    .-.....+++++++..++++..+               ..+|.+..+|..+++.
T Consensus       236 ~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          236 GNDNVVQIWDARSSIPKFTKTN----HNAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGAR  296 (401)
T ss_dssp             ETTSCEEEEETTCSSEEEEECC----CSSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCE
T ss_pred             eCCCeEEEccCCCCCccEEecC----CcceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCE
Confidence            4444588889877554322211    12346789999964567766432               1247888888877765


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEe-cCCCeEEEEEecCCCCCce-eeecCCCCCceeeeCCCCCCcEEEEEecCCCCC
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSE-FTGNRTLKYWLRGPRANSF-DIINFQAKPHNIKRNPGLLQTFWEAAIITRQPA  269 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d-~~~~~I~~~~~~~~~~g~~-~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~  269 (310)
                      ......-...+.++|+|+++.|+++. ...+.|..+++........ ++..-.+....+++++  +|.+.++....    
T Consensus       297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~--dg~~l~s~~~d----  370 (401)
T 4aez_A          297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP--DGRILSTAASD----  370 (401)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT--TSSEEEEECTT----
T ss_pred             EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC--CCCEEEEEeCC----
Confidence            55444445678999999999776653 4678899888864211101 1122234567899999  99876665543    


Q ss_pred             CCCceeeEEECC-CCcEEE
Q 048181          270 GTPVPIGQRISA-FGAVLD  287 (310)
Q Consensus       270 ~~~~~~v~~~~~-~G~~~~  287 (310)
                          +.+..++- +|+.+.
T Consensus       371 ----g~i~iw~~~~~~~~~  385 (401)
T 4aez_A          371 ----ENLKFWRVYDGDHVK  385 (401)
T ss_dssp             ----SEEEEEECCC-----
T ss_pred             ----CcEEEEECCCCcccc
Confidence                26767774 455443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.34  E-value=0.00034  Score=63.32  Aligned_cols=162  Identities=12%  Similarity=0.064  Sum_probs=105.4

Q ss_pred             CCCcceEEEccCC-CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-
Q 048181           33 AFGGESIAFEPVG-GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-  110 (310)
Q Consensus        33 ~~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-  110 (310)
                      -....+++|.++| +++++...++.|..++..+.......                ...........+++.+.++++++ 
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------~~~~h~~~v~~~~~~~~~~~~l~s  136 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI----------------QGMGPGDAITGMKFNQFNTNQLFV  136 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE----------------CCCSTTCBEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee----------------ecCCcCCceeEEEeCCCCCCEEEE
Confidence            3567789999998 88888888999999998743221110                00012334568899742555554 


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      +.....|..+|..+.....+... .+ .-.....++++++ ++.+++-.                 .+|.|..+|.....
T Consensus       137 ~~~d~~i~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~-~~~l~~~~-----------------~d~~i~i~d~~~~~  196 (383)
T 3ei3_B          137 SSIRGATTLRDFSGSVIQVFAKT-DS-WDYWYCCVDVSVS-RQMLATGD-----------------STGRLLLLGLDGHE  196 (383)
T ss_dssp             EETTTEEEEEETTSCEEEEEECC-CC-SSCCEEEEEEETT-TTEEEEEE-----------------TTSEEEEEETTSCE
T ss_pred             EeCCCEEEEEECCCCceEEEecc-CC-CCCCeEEEEECCC-CCEEEEEC-----------------CCCCEEEEECCCCE
Confidence            44444577888887555544321 11 1234678999995 77666532                 24778888875444


Q ss_pred             EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      +..+...-...+.++|+|+++.++++-...+.|..+++..
T Consensus       197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            4444444456789999999985667777788999999874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.34  E-value=0.0011  Score=59.17  Aligned_cols=192  Identities=8%  Similarity=0.019  Sum_probs=115.3

Q ss_pred             eCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           28 LFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        28 ~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      .+.+....-.+++|.++|+++++...++.|..++...+.......                  ........+++. ++|+
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~------------------~~~~~v~~~~~s-~~~~  110 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP------------------LRSSWVMTCAYA-PSGN  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE------------------CSSSCEEEEEEC-TTSS
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee------------------cCCccEEEEEEC-CCCC
Confidence            345555667899999999999999999999999876433211110                  112234578886 5666


Q ss_pred             EEEEeC-CCcEEEEeCCCCe--EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          108 LYIADA-YSGLLVVGPNGRL--ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       108 LyVad~-~~gi~~id~~~~~--~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      ++++-. ...+..++..++.  .... ....+ .-.....+++.+ ++.++.+.                  .+|.+..+
T Consensus       111 ~l~s~~~d~~v~iw~~~~~~~~~~~~-~~~~~-h~~~v~~~~~~~-~~~l~s~s------------------~d~~i~~w  169 (340)
T 1got_B          111 YVACGGLDNICSIYNLKTREGNVRVS-RELAG-HTGYLSCCRFLD-DNQIVTSS------------------GDTTCALW  169 (340)
T ss_dssp             EEEEEETTCEEEEEETTTCSBSCEEE-EEEEC-CSSCEEEEEEEE-TTEEEEEE------------------TTSCEEEE
T ss_pred             EEEEEeCCCeEEEEECccCCCcceeE-EEecC-CCccEEEEEECC-CCcEEEEE------------------CCCcEEEE
Confidence            655433 3336666765432  1111 11111 112345667776 46654432                  24678888


Q ss_pred             cCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-e-ecCCCCCceeeeCCCCCCcEEEE
Q 048181          185 NPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-I-INFQAKPHNIKRNPGLLQTFWEA  261 (310)
Q Consensus       185 d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~-~~l~g~Pdgl~~d~~~dG~l~va  261 (310)
                      |..+++...... .-...+.++++|+++ ++++-...+.|..+++..   +... . ..-......+++.+  +|+++++
T Consensus       170 d~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~---~~~~~~~~~h~~~v~~v~~~p--~~~~l~s  243 (340)
T 1got_B          170 DIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVRE---GMCRQTFTGHESDINAICFFP--NGNAFAT  243 (340)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT---CSEEEEECCCSSCEEEEEECT--TSSEEEE
T ss_pred             ECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCC---CeeEEEEcCCcCCEEEEEEcC--CCCEEEE
Confidence            877776544333 233457999999998 566777788898888753   2221 1 22223456788888  8887666


Q ss_pred             EecC
Q 048181          262 AIIT  265 (310)
Q Consensus       262 ~~~~  265 (310)
                      ....
T Consensus       244 ~s~d  247 (340)
T 1got_B          244 GSDD  247 (340)
T ss_dssp             EETT
T ss_pred             EcCC
Confidence            5443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.29  E-value=0.00027  Score=64.05  Aligned_cols=200  Identities=9%  Similarity=0.017  Sum_probs=115.4

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           33 AFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      -....+++|.++++.+++...++.|..++...+................   ..............+++. +++.++++.
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~  224 (425)
T 1r5m_A          149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI---NAENHSGDGSLGVDVEWV-DDDKFVIPG  224 (425)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------------CCCBSCCEEE-ETTEEEEEC
T ss_pred             CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce---eeccccCCcceeeEEEEc-CCCEEEEEc
Confidence            3457789999999988888889999999986543221111000000000   000000011114567776 567776665


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ....|..+|..+++.......    .-.....++++++ ++.+++-.                 .+|.+..+|..+++..
T Consensus       225 ~~g~i~~~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~-----------------~d~~i~i~d~~~~~~~  282 (425)
T 1r5m_A          225 PKGAIFVYQITEKTPTGKLIG----HHGPISVLEFNDT-NKLLLSAS-----------------DDGTLRIWHGGNGNSQ  282 (425)
T ss_dssp             GGGCEEEEETTCSSCSEEECC----CSSCEEEEEEETT-TTEEEEEE-----------------TTSCEEEECSSSBSCS
T ss_pred             CCCeEEEEEcCCCceeeeecc----CCCceEEEEECCC-CCEEEEEc-----------------CCCEEEEEECCCCccc
Confidence            444588888876543221111    1133578999994 76555532                 2467888887655433


Q ss_pred             Eee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          193 VLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       193 ~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ... ..-.....++++|++  ++++-...+.|..+++..   +....  .........+++.+  +|++.++....
T Consensus       283 ~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~d  351 (425)
T 1r5m_A          283 NCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ---NTLLALSIVDGVPIFAGRISQ--DGQKYAVAFMD  351 (425)
T ss_dssp             EEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT---TEEEEEEECTTCCEEEEEECT--TSSEEEEEETT
T ss_pred             eEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC---CcEeEecccCCccEEEEEEcC--CCCEEEEEECC
Confidence            222 233456899999998  556667788999998753   22211  22233467889998  89876665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.28  E-value=0.0001  Score=72.04  Aligned_cols=156  Identities=11%  Similarity=-0.048  Sum_probs=92.2

Q ss_pred             CcceEEEccCCCEEEEEeCC----------CeEEEEECCC------ceEEeeeecCCCCccccCCCccccCC-CCCCcee
Q 048181           35 GGESIAFEPVGGAFYTGVAD----------GRILKYQAPD------GFTDFAFTTPTRSKAVCDGTTNLDLG-PICRRTF   97 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~----------g~I~r~~~~g------~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~P~   97 (310)
                      ...+++|.|||+.++....+          .+|+.++.++      +....                   +. .......
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------------l~~~~~~~~~  191 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE-------------------LSDDAHRFVT  191 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE-------------------SSCSCSSEEC
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE-------------------EEecCCCccc
Confidence            35678999999744443322          4788888776      32111                   01 1112345


Q ss_pred             eEEEecCCCe-EEEEeCC--------CcEEEEeCC-CC---eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccC
Q 048181           98 GLALHYATRQ-LYIADAY--------SGLLVVGPN-GR---LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYD  164 (310)
Q Consensus        98 Gla~d~~~g~-LyVad~~--------~gi~~id~~-~~---~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~  164 (310)
                      .+++. ++|+ |+++...        ..|+.+|.+ ++   +.+.+....    -.....++++|+ |++|++....   
T Consensus       192 ~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----~~~~~~~~~spd-g~l~~~~~~~---  262 (662)
T 3azo_A          192 GPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----EEAIAQAEWAPD-GSLIVATDRT---  262 (662)
T ss_dssp             CCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET----TBCEEEEEECTT-SCEEEEECTT---
T ss_pred             CceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC----CceEcceEECCC-CeEEEEECCC---
Confidence            67786 5664 5544322        248889988 46   444443211    123567889994 8888765322   


Q ss_pred             ccceeEeeeecCCCceEEEEcCCCCeEEEeecCC-CC--------CceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          165 FRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL-TG--------PAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       165 ~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l-~~--------pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                                  ...+|+++|.++++.+.+...- ..        ...++++++++.+|.+.....+|+++++++
T Consensus       263 ------------~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          263 ------------GWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             ------------SSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred             ------------CCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCC
Confidence                        1237999998777766654321 11        357899999986555544455778887754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.28  E-value=0.0001  Score=72.15  Aligned_cols=213  Identities=12%  Similarity=-0.004  Sum_probs=117.2

Q ss_pred             eEEEc--cCCC--EEEEEeCCCeEEEEECC----CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           38 SIAFE--PVGG--AFYTGVADGRILKYQAP----DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        38 gia~d--~~G~--l~~~d~~~g~I~r~~~~----g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      .++|.  |||+  ++|+...+.+|+.++.+    +....+...               ...........++++++...|+
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~---------------~~~~~~~~~~~~~~spDg~~l~  145 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPV---------------SAVGGGLRWADPVLLPERGEVW  145 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCC---------------CCSTTCEEEEEEEEETTTTEEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCC---------------ccCCCCccccCcEECCCCCEEE
Confidence            45555  7875  45665557889999876    333322100               0000123456889974334565


Q ss_pred             EEeCC----------CcEEEEeCCC------CeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181          110 IADAY----------SGLLVVGPNG------RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus       110 Vad~~----------~gi~~id~~~------~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      ++...          ..|+.++.++      ++.+.+..  .+.  .....++++|++..|+++......          
T Consensus       146 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~~~--~~~~~~~~SpDG~~la~~~~~~~~----------  211 (662)
T 3azo_A          146 CMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--DAH--RFVTGPRLSPDGRQAVWLAWDHPR----------  211 (662)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--SCS--SEECCCEECTTSSEEEEEEECTTC----------
T ss_pred             EEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe--cCC--CcccCceECCCCCEEEEEECCCCC----------
Confidence            54322          2489999988      66655530  111  245678999963346555422100          


Q ss_pred             ecCCCceEEEEcCC-CC---eEEEeecC-CCCCceeEEccCCCEEEEEecCCC--eEEEEEecCCCCCcee-e-e---cC
Q 048181          174 TNDSTGRLLSYNPR-SS---QVTVLLRN-LTGPAGVAISVDSSFLLVSEFTGN--RTLKYWLRGPRANSFD-I-I---NF  241 (310)
Q Consensus       174 ~~~~~G~l~~~d~~-~g---~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~~~~~g~~~-~-~---~l  241 (310)
                      ..-....|+.+|.+ ++   +.+.+..+ -.....++|+|||+ +|++....+  +|+++++++   +..+ + .   ..
T Consensus       212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~---~~~~~l~~~~~~~  287 (662)
T 3azo_A          212 MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT---GAATQLCRREEEF  287 (662)
T ss_dssp             CTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTT---CCEEESSCCSSBS
T ss_pred             CCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCC---Cceeecccccccc
Confidence            00012468888877 46   55555543 34667899999999 555544444  788887643   2222 1 1   11


Q ss_pred             --C-CC--CceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecC
Q 048181          242 --Q-AK--PHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFE  292 (310)
Q Consensus       242 --~-g~--Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p  292 (310)
                        | -.  ...+++.+  +|.+++.... ..      ..+.++|.++..+..+..+
T Consensus       288 ~~p~w~~~~~~~~~~~--~~~~~~~~~~-~~------~~l~~~d~~~~~~~~l~~~  334 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLA--NGLIAVVHGK-GA------AVLGILDPESGELVDAAGP  334 (662)
T ss_dssp             SCCCCSTTCCSEEECT--TSCEEEEEBS-SS------CEEEEEETTTTEEEECCSS
T ss_pred             cCccccccCceEeEeC--CCEEEEEEEc-Cc------cEEEEEECCCCcEEEecCC
Confidence              0 01  23577777  7887766544 32      3566667665445555444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.26  E-value=0.00029  Score=65.37  Aligned_cols=202  Identities=10%  Similarity=0.113  Sum_probs=113.7

Q ss_pred             CCcceEEEccC-CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEE
Q 048181           34 FGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVa  111 (310)
                      ..+..+++.++ ++++++...+|.|+.++.........   ...     .......+........+|+++ +++. ++++
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---~~~-----~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s  199 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---PSG-----ECQPDLRLRGHQKEGYGLSWN-PNLNGYLLS  199 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---TTC-----CCCCSEEEECCSSCCCCEEEC-TTSTTEEEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---ccc-----cCCCcEEecCCCCCeEEEEeC-CCCCCeEEE
Confidence            35778999997 67788888889888887643100000   000     000000001122345689997 4444 5554


Q ss_pred             eC-CCcEEEEeCCCCeE--EEe--eccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          112 DA-YSGLLVVGPNGRLA--TQL--ATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       112 d~-~~gi~~id~~~~~~--~~~--~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      .. ...|..++...+..  ..+  .....+ .-...+++++++.++.++++...                 +|.|..+|.
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~-----------------dg~i~i~d~  261 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVAD-----------------DQKLMIWDT  261 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEET
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeC-----------------CCeEEEEEC
Confidence            44 34477777765211  000  011111 22346789999854677776543                 477888887


Q ss_pred             CCC----eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCC-cEEEE
Q 048181          187 RSS----QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQ-TFWEA  261 (310)
Q Consensus       187 ~~g----~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG-~l~va  261 (310)
                      .++    .+..+...-..++.|+|+|+++.++++-...+.|..+++.....-...+....+....+++.+  +| .++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp--~~~~~l~s  339 (430)
T 2xyi_A          262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP--HNETILAS  339 (430)
T ss_dssp             TCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS--SCTTEEEE
T ss_pred             CCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC--CCCCEEEE
Confidence            654    222332333467899999999888888888999999998642111111122233456788888  77 45555


Q ss_pred             Eec
Q 048181          262 AII  264 (310)
Q Consensus       262 ~~~  264 (310)
                      ...
T Consensus       340 ~~~  342 (430)
T 2xyi_A          340 SGT  342 (430)
T ss_dssp             EET
T ss_pred             EeC
Confidence            443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.24  E-value=0.0022  Score=56.35  Aligned_cols=156  Identities=10%  Similarity=-0.015  Sum_probs=97.7

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-Ee
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-AD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad  112 (310)
                      ....+++|.|+|.++++...++.|..++...+.......                  .....-..+++. +++++++ +.
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~------------------~~~~~v~~~~~~-~~~~~l~s~s   74 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ------------------VTETPVRAGKFI-ARKNWIIVGS   74 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE------------------CCSSCEEEEEEE-GGGTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee------------------ccCCcEEEEEEe-CCCCEEEEEC
Confidence            356789999999989999999999999987543221110                  111223467786 4555544 44


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC-eE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS-QV  191 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g-~~  191 (310)
                      ....|..+|.++++......   + +-...+.++++|+ +.+++|-..                 +|.+..+|..++ ..
T Consensus        75 ~d~~i~vwd~~~~~~~~~~~---~-h~~~v~~~~~~~~-~~~l~sgs~-----------------D~~v~lWd~~~~~~~  132 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEKVVDFE---A-HPDYIRSIAVHPT-KPYVLSGSD-----------------DLTVKLWNWENNWAL  132 (304)
T ss_dssp             TTSEEEEEETTTCCEEEEEE---C-CSSCEEEEEECSS-SSEEEEEET-----------------TSCEEEEEGGGTTEE
T ss_pred             CCCEEEEEECCCCcEEEEEe---C-CCCcEEEEEEcCC-CCEEEEECC-----------------CCeEEEEECCCCcch
Confidence            44458888887765432211   1 1234678999994 777666432                 466777776544 33


Q ss_pred             EE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          192 TV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       192 ~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      .. +...-..-+.++|+|++..++++-...+.|..+++..
T Consensus       133 ~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred             hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence            22 2223334589999994333667777888999888753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.23  E-value=0.00064  Score=63.31  Aligned_cols=209  Identities=7%  Similarity=-0.007  Sum_probs=122.7

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC---CeEEE-
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT---RQLYI-  110 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~---g~LyV-  110 (310)
                      .+.+++|.++|..+++...++.|+.++.........          +    ...+.........+++. ++   +++++ 
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~----------~----~~~~~~h~~~v~~~~~s-p~~~~~~~l~s  215 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF----------T----QEPILGHVSMLTDVHLI-KDSDGHQFIIT  215 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC----------C----CCCSEECSSCEEEEEEE-ECTTSCEEEEE
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc----------c----ceeeecccCceEEEEEc-CCCCCCcEEEE
Confidence            567999999999888888889999888653221000          0    00001122345688997 45   65554 


Q ss_pred             EeCCCcEEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          111 ADAYSGLLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      ++....|..+|..+++. ..+.   .+ .-...+.++++ + |+++++-.                 .+|.|..+|..++
T Consensus       216 ~~~d~~i~vwd~~~~~~~~~~~---~~-h~~~v~~~~~s-d-~~~l~s~~-----------------~d~~v~vwd~~~~  272 (450)
T 2vdu_B          216 SDRDEHIKISHYPQCFIVDKWL---FG-HKHFVSSICCG-K-DYLLLSAG-----------------GDDKIFAWDWKTG  272 (450)
T ss_dssp             EETTSCEEEEEESCTTCEEEEC---CC-CSSCEEEEEEC-S-TTEEEEEE-----------------SSSEEEEEETTTC
T ss_pred             EcCCCcEEEEECCCCceeeeee---cC-CCCceEEEEEC-C-CCEEEEEe-----------------CCCeEEEEECCCC
Confidence            44444577778766543 2221   11 12346788888 5 66655533                 2467777877666


Q ss_pred             eEEEeecC--------------------------CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ec
Q 048181          190 QVTVLLRN--------------------------LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---IN  240 (310)
Q Consensus       190 ~~~~~~~~--------------------------l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~  240 (310)
                      +.......                          -....+|+++|++++|+++....+.|..|++.....+..+.   ..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~  352 (450)
T 2vdu_B          273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT  352 (450)
T ss_dssp             CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE
T ss_pred             cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec
Confidence            54332210                          11346899999999888887678899999982112222222   22


Q ss_pred             CCCCCceeeeCCCCCCcEEEEEecCCCCC-CCCceeeEEECCCCc
Q 048181          241 FQAKPHNIKRNPGLLQTFWEAAIITRQPA-GTPVPIGQRISAFGA  284 (310)
Q Consensus       241 l~g~Pdgl~~d~~~dG~l~va~~~~~~~~-~~~~~~v~~~~~~G~  284 (310)
                      ..+.+..+++++  + .+|++......+. ....-.+..++.++.
T Consensus       353 ~~~~v~~~~~~~--~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~  394 (450)
T 2vdu_B          353 FPYNVISLSAHN--D-EFQVTLDNKESSGVQKNFAKFIEYNLNEN  394 (450)
T ss_dssp             CSSCEEEEEEET--T-EEEEEECCTTCCSSCCCSEEEEEEETTTT
T ss_pred             cCCceEEEEecC--C-cEEEEEecccCCCCCCcceEEEEEEcCCC
Confidence            235688899998  5 5777765542110 001125677776543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.23  E-value=0.00051  Score=62.48  Aligned_cols=188  Identities=10%  Similarity=0.006  Sum_probs=109.3

Q ss_pred             CcceEEEccCCCEEEEEe--CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           35 GGESIAFEPVGGAFYTGV--ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~--~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ....++|.|||+++.+..  .++.|.-++..........                   ........+++. ++|+++++-
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-------------------~~~~~V~~v~fs-pdg~~l~s~  194 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-------------------ETRGEVKDLHFS-TDGKVVAYI  194 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-------------------ECSSCCCEEEEC-TTSSEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-------------------CCCCceEEEEEc-cCCceEEec
Confidence            356799999998766544  4678888888755433211                   011235689997 688877765


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ...++.+++..+++...... ..+ +-...+.++++|+ |..+++-....             ...-.++.++.......
T Consensus       195 s~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~v~fspd-g~~l~~~s~d~-------------~~~~~i~~~~~~~~~~~  258 (365)
T 4h5i_A          195 TGSSLEVISTVTGSCIARKT-DFD-KNWSLSKINFIAD-DTVLIAASLKK-------------GKGIVLTKISIKSGNTS  258 (365)
T ss_dssp             CSSCEEEEETTTCCEEEEEC-CCC-TTEEEEEEEEEET-TEEEEEEEESS-------------SCCEEEEEEEEETTEEE
T ss_pred             cceeEEEEEeccCcceeeee-cCC-CCCCEEEEEEcCC-CCEEEEEecCC-------------cceeEEeecccccceec
Confidence            56668888776654322111 111 1123568999994 88777643210             00113444443323221


Q ss_pred             -----EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce--eeec-CCCCCceeeeCCCCCCcEEEEEec
Q 048181          193 -----VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF--DIIN-FQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       193 -----~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~--~~~~-l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                           .+......-+.++|+|||++ +++-+..+.|..+++..   +..  .+.. -.+....+++.+  ||.+.++...
T Consensus       259 ~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~---~~~~~~~~~gH~~~V~~v~fSp--dg~~laS~S~  332 (365)
T 4h5i_A          259 VLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIALVKLKD---LSMSKIFKQAHSFAITEVTISP--DSTYVASVSA  332 (365)
T ss_dssp             EEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEEEEETTT---TEEEEEETTSSSSCEEEEEECT--TSCEEEEEET
T ss_pred             ceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEEEEECCC---CcEEEEecCcccCCEEEEEECC--CCCEEEEEeC
Confidence                 12223334578999999984 45556678888888753   222  1111 123457899999  9987776544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.22  E-value=0.00026  Score=69.72  Aligned_cols=173  Identities=14%  Similarity=0.117  Sum_probs=96.3

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCC-----ce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPD-----GF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-  107 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-----~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-  107 (310)
                      ...+++|.|||+.++. ..++.|+.++.++     +. ..+...+.   .....|..  .......++.++++. ++|+ 
T Consensus       122 ~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~---~~~~~g~~--~~~ee~~~~~~~~~S-pDg~~  194 (706)
T 2z3z_A          122 ETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGT---ETLVYGQA--VHQREFGIEKGTFWS-PKGSC  194 (706)
T ss_dssp             CCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCB---TTEEESSC--CGGGCTTCCCSEEEC-TTSSE
T ss_pred             cccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCC---CCeEcccc--hhhhhcCCCceEEEC-CCCCE
Confidence            4667899999975444 3578899888764     32 22110000   00000000  000112345789997 5554 


Q ss_pred             EEEEe---------------------------------CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-
Q 048181          108 LYIAD---------------------------------AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-  153 (310)
Q Consensus       108 LyVad---------------------------------~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-  153 (310)
                      |+++.                                 ....|+.+|.++++...+...  ...-..+..++++|+ |+ 
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spd-g~~  271 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPD-ENI  271 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTT-SSE
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC--CCCceeEeeEEEECC-CCE
Confidence            55553                                 112388889888776544321  112234678999995 65 


Q ss_pred             EEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC-eEEEeecC--C---CCCceeEEcc--CCCEEEEEecC-CCeEE
Q 048181          154 VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS-QVTVLLRN--L---TGPAGVAISV--DSSFLLVSEFT-GNRTL  224 (310)
Q Consensus       154 lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g-~~~~~~~~--l---~~pnGIa~~~--dg~~Lyv~d~~-~~~I~  224 (310)
                      |+++....             ......|+.+|..++ ..+.+...  -   ...+.++|+|  ||++||+++.. ..+||
T Consensus       272 l~~~~~~~-------------~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~  338 (706)
T 2z3z_A          272 LYVAEVNR-------------AQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY  338 (706)
T ss_dssp             EEEEEECT-------------TSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred             EEEEEeCC-------------CCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence            66643221             012357889998887 55544321  1   1237899999  99977766543 35778


Q ss_pred             EEEecC
Q 048181          225 KYWLRG  230 (310)
Q Consensus       225 ~~~~~~  230 (310)
                      .++.++
T Consensus       339 ~~~~~~  344 (706)
T 2z3z_A          339 LYDTTG  344 (706)
T ss_dssp             EEETTS
T ss_pred             EEECCC
Confidence            777543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.22  E-value=0.0018  Score=59.71  Aligned_cols=204  Identities=7%  Similarity=-0.011  Sum_probs=122.4

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-e
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-D  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d  112 (310)
                      ....+++|.++|.++++...++.|.-++..+......                  +.........+++. ++++.+++ .
T Consensus       151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~------------------~~~h~~~V~~v~~~-p~~~~l~s~s  211 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT------------------MHGHDHNVSSVSIM-PNGDHIVSAS  211 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC------------------CCCCSSCEEEEEEC-SSSSEEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE------------------EcCCCCCEEEEEEe-CCCCEEEEEe
Confidence            3456788999998888888888888888764321110                  01122345678887 56665554 4


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ....|..+|..++.......   + +-...+.+++++ +|.++++-..                 +|.+..+|..+++..
T Consensus       212 ~D~~i~~wd~~~~~~~~~~~---~-h~~~v~~~~~~~-~g~~l~s~s~-----------------D~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          212 RDKTIKMWEVQTGYCVKTFT---G-HREWVRMVRPNQ-DGTLIASCSN-----------------DQTVRVWVVATKECK  269 (410)
T ss_dssp             TTSEEEEEETTTCCEEEEEE---C-CSSCEEEEEECT-TSSEEEEEET-----------------TSCEEEEETTTCCEE
T ss_pred             CCCeEEEEECCCCcEEEEEe---C-CCccEEEEEECC-CCCEEEEEcC-----------------CCeEEEEECCCCcee
Confidence            44447788887765322111   1 123456788888 4887776432                 466777777666544


Q ss_pred             Eee-cCCCCCceeEEccC--------------------CCEEEEEecCCCeEEEEEecCCCCCcee-e-ecCCCCCceee
Q 048181          193 VLL-RNLTGPAGVAISVD--------------------SSFLLVSEFTGNRTLKYWLRGPRANSFD-I-INFQAKPHNIK  249 (310)
Q Consensus       193 ~~~-~~l~~pnGIa~~~d--------------------g~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~-~~l~g~Pdgl~  249 (310)
                      ... ..-...+.++|+|+                    |. ++++-+..+.|..+++..   +... . .+-.+....++
T Consensus       270 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~---~~~~~~~~~h~~~v~~v~  345 (410)
T 1vyh_C          270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVL  345 (410)
T ss_dssp             EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTT---TEEEEEEECCSSCEEEEE
T ss_pred             eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCC---CceEEEEECCCCcEEEEE
Confidence            332 22334578888886                    44 566777788899888753   2221 1 22233456789


Q ss_pred             eCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          250 RNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       250 ~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                      +++  +|.+.++....+        .+..+|. .++.+..+...
T Consensus       346 ~~~--~g~~l~s~s~D~--------~i~vwd~~~~~~~~~~~~h  379 (410)
T 1vyh_C          346 FHS--GGKFILSCADDK--------TLRVWDYKNKRCMKTLNAH  379 (410)
T ss_dssp             ECS--SSSCEEEEETTT--------EEEEECCTTSCCCEEEECC
T ss_pred             EcC--CCCEEEEEeCCC--------eEEEEECCCCceEEEEcCC
Confidence            998  887666554432        5666664 45555555443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.21  E-value=0.0024  Score=55.91  Aligned_cols=155  Identities=9%  Similarity=0.094  Sum_probs=97.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-e
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-D  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d  112 (310)
                      ....+++|.++|+++++...++.|..++...+......                  .........+++. ++++++++ .
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~------------------~~~~~~v~~~~~~-~~~~~l~s~~  126 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL------------------KGHSNYVFCCNFN-PQSNLIVSGS  126 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------------------ECCSSCEEEEEEC-SSSSEEEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE------------------cCCCCCEEEEEEc-CCCCEEEEEe
Confidence            45678999999998888888999999987643221110                  0112234578887 55655554 4


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ....|..+|..+++.......    .-.....++++++ |.++++-..                 +|.+..+|..+++..
T Consensus       127 ~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~-----------------d~~i~~wd~~~~~~~  184 (312)
T 4ery_A          127 FDESVRIWDVKTGKCLKTLPA----HSDPVSAVHFNRD-GSLIVSSSY-----------------DGLCRIWDTASGQCL  184 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECC----CSSCEEEEEECTT-SSEEEEEET-----------------TSCEEEEETTTCCEE
T ss_pred             CCCcEEEEECCCCEEEEEecC----CCCcEEEEEEcCC-CCEEEEEeC-----------------CCcEEEEECCCCcee
Confidence            444588889877654322111    1123567899984 776665432                 467888887666543


Q ss_pred             E-eec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          193 V-LLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       193 ~-~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      . +.. .....+.++++|++++| ++-+..+.|..+++..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          185 KTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTLKLWDYSK  223 (312)
T ss_dssp             EEECCSSCCCEEEEEECTTSSEE-EEEETTTEEEEEETTT
T ss_pred             eEEeccCCCceEEEEECCCCCEE-EEEcCCCeEEEEECCC
Confidence            2 222 22234679999999855 4556678898888753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.20  E-value=0.0014  Score=59.64  Aligned_cols=162  Identities=12%  Similarity=0.091  Sum_probs=100.9

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      .+.-....+++|.++|.++++...++.|..++...+.  ..+.                    ........+++. ++++
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--------------------~h~~~v~~~~~~-~~~~  194 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI--------------------GHRATVTDIAII-DRGR  194 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE--------------------CCSSCEEEEEEE-TTTT
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc--------------------CCCCcEEEEEEc-CCCC
Confidence            3444567789999999988898899999999976432  1221                    122345688997 5665


Q ss_pred             EEE-EeCCCcEEEEeCCCCeEEEeeccCCCc--------------------cccCccceEEeCCCCeEEEEcCCCccCcc
Q 048181          108 LYI-ADAYSGLLVVGPNGRLATQLATGAEGQ--------------------AFHFLDGLDVDQGTGVVYFTDASGVYDFR  166 (310)
Q Consensus       108 LyV-ad~~~gi~~id~~~~~~~~~~~~~~g~--------------------~~~~pndvavd~~~G~lyvtd~~~~~~~~  166 (310)
                      +++ +.....|..+|..+++.........+.                    .....+.+++++ +|+.+++-.       
T Consensus       195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-------  266 (420)
T 3vl1_A          195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGH-------  266 (420)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEE-------
T ss_pred             EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEc-------
Confidence            544 444444888888776543322211000                    012234556666 365555432       


Q ss_pred             ceeEeeeecCCCceEEEEcCCCCeEEEee-c-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          167 TIVKLNITNDSTGRLLSYNPRSSQVTVLL-R-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       167 ~~~~~~~~~~~~G~l~~~d~~~g~~~~~~-~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                                .+|.|..+|..+++..... . .-.....++|+|+++.++++-...+.|..+++..
T Consensus       267 ----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          267 ----------VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             ----------TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             ----------CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence                      3577888888766543322 2 2235689999999984566667788999999864

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.20  E-value=2.5e-05  Score=75.23  Aligned_cols=124  Identities=17%  Similarity=0.257  Sum_probs=79.4

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeC---------------------CCeEEEEECCCc--------eEEeeeecCCCCcc--
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVA---------------------DGRILKYQAPDG--------FTDFAFTTPTRSKA--   79 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~---------------------~g~I~r~~~~g~--------~~~~~~~~~~~~~~--   79 (310)
                      .+.+||+++++| +|.+|++-..                     .|.|+|+.+++.        +..+...+......  
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            456899999998 5787777532                     288999986531        33333222110000  


Q ss_pred             ccCCCccccCCCCCCceeeEEEecCCCeEEE-EeCC------------CcEEEEeCCCCeEEEeeccCCCccccCccceE
Q 048181           80 VCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADAY------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLD  146 (310)
Q Consensus        80 ~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~~------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndva  146 (310)
                      ...|.........+..|.+|++| ++|+||+ +|..            ++++++++++++++.++...   ....|||++
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd-~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P---~~aEpnGia  537 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFD-KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP---IGCEVTGIS  537 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEEC-TTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC---TTCEEEEEE
T ss_pred             cccCccCccccCccCCCCceEEC-CCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC---CCccccCCE
Confidence            00000011112457889999998 7899999 6752            25999999888888776432   234689999


Q ss_pred             EeCCCCeEEEEcC
Q 048181          147 VDQGTGVVYFTDA  159 (310)
Q Consensus       147 vd~~~G~lyvtd~  159 (310)
                      ++|+...|||+-.
T Consensus       538 fSPD~ktLfV~vQ  550 (592)
T 4a9v_A          538 FSPDQKTLFVGIQ  550 (592)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             ECCCCCEEEEEEe
Confidence            9997667888753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.18  E-value=0.0015  Score=60.24  Aligned_cols=153  Identities=10%  Similarity=0.066  Sum_probs=99.2

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCce-E-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-T-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ....+++|.|++.++++...++.|..++...+. . .+.                    ........++++ ++|+++++
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--------------------~h~~~V~~v~~~-~~~~~l~s  167 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--------------------GHTDSVQDISFD-HSGKLLAS  167 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--------------------CCSSCEEEEEEC-TTSSEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------------------ccCCcEEEEEEc-CCCCEEEE
Confidence            345689999999989999999999999976432 1 111                    112345678997 56766654


Q ss_pred             e-CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          112 D-AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       112 d-~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      - ....|..+|..+++...   ...+ +-...+.++++|+ |+.+++-+                 .+|.+..+|..++.
T Consensus       168 gs~D~~i~iwd~~~~~~~~---~~~~-h~~~V~~v~~~p~-~~~l~s~s-----------------~D~~i~~wd~~~~~  225 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFECIR---TMHG-HDHNVSSVSIMPN-GDHIVSAS-----------------RDKTIKMWEVQTGY  225 (410)
T ss_dssp             EETTSCCCEEETTSSCEEE---CCCC-CSSCEEEEEECSS-SSEEEEEE-----------------TTSEEEEEETTTCC
T ss_pred             EeCCCeEEEEeCCCCceeE---EEcC-CCCCEEEEEEeCC-CCEEEEEe-----------------CCCeEEEEECCCCc
Confidence            3 33347777877654322   1222 1234678999994 77666543                 24778888877665


Q ss_pred             EE-EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          191 VT-VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       191 ~~-~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      .. .+...-..-+.+++++||+ ++++-...+.|..+++..
T Consensus       226 ~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          226 CVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred             EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCC
Confidence            43 3333334567899999998 556666778888887753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.17  E-value=0.00068  Score=60.88  Aligned_cols=190  Identities=11%  Similarity=-0.010  Sum_probs=104.3

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-eC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-DA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d~  113 (310)
                      ....++|.|+|.++.+...++.|.-++..++.......               ........-..+++. ++|+++++ ..
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~---------------~~~~h~~~v~~~~~s-p~g~~l~s~s~   81 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV---------------LSEGHQRTVRKVAWS-PCGNYLASASF   81 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE---------------ECSSCSSCEEEEEEC-TTSSEEEEEET
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee---------------eccccCCcEEEEEEC-CCCCEEEEEEC
Confidence            34589999999988888889988888765432110000               000112234678997 56665554 33


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe-E-
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-V-  191 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-~-  191 (310)
                      ...+...+...+....+. ...+ +-...+.++++|+ |+++++-..                 +|.+..+|..++. . 
T Consensus        82 D~~v~iw~~~~~~~~~~~-~~~~-h~~~v~~v~~sp~-~~~l~s~s~-----------------D~~v~iwd~~~~~~~~  141 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVT-TLEG-HENEVKSVAWAPS-GNLLATCSR-----------------DKSVWVWEVDEEDEYE  141 (345)
T ss_dssp             TSCEEEEEECCC-EEEEE-EECC-CSSCEEEEEECTT-SSEEEEEET-----------------TSCEEEEEECTTSCEE
T ss_pred             CCcEEEEEccCCCeEEEE-EccC-CCCCceEEEEeCC-CCEEEEEEC-----------------CCeEEEEECCCCCCeE
Confidence            334555555544322221 1222 2234678999994 877776432                 3556555544332 1 


Q ss_pred             --EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCc-eeeecCCCCCceeeeCCCCCCcEEEEEe
Q 048181          192 --TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANS-FDIINFQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       192 --~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~-~~~~~l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                        ..+...-...+.++|+|++++ +++-+..+.|..++........ ..+.+-.+....+++++  +|++.++..
T Consensus       142 ~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~l~s~s  213 (345)
T 3fm0_A          142 CVSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP--SGQRLASCS  213 (345)
T ss_dssp             EEEEECCCCSCEEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT--TSSEEEEEE
T ss_pred             EEEEecCcCCCeEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC--CCCEEEEEe
Confidence              122222334578999999984 5555667778877765321000 01111123345677777  776655543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.17  E-value=0.0007  Score=61.73  Aligned_cols=179  Identities=7%  Similarity=0.052  Sum_probs=105.0

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-EeCCCcE
Q 048181           39 IAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADAYSGL  117 (310)
Q Consensus        39 ia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~~~gi  117 (310)
                      .++.++|+++++...++.|..++...+.....                  +.........++++ +++++++ +.....|
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i  163 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREI------------------DQAHVSEITKLKFF-PSGEALISSSQDMQL  163 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEE------------------TTSSSSCEEEEEEC-TTSSEEEEEETTSEE
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeee------------------cccccCccEEEEEC-CCCCEEEEEeCCCeE
Confidence            35678899888888899999888775432211                  01123345689997 5665544 4444448


Q ss_pred             EEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec
Q 048181          118 LVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR  196 (310)
Q Consensus       118 ~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~  196 (310)
                      ..+|..+++. ..+ ..    .-...+.++++++ |+.+++-..                 +|.+..+|..+++......
T Consensus       164 ~iwd~~~~~~~~~~-~~----h~~~v~~~~~~~~-~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~  220 (420)
T 3vl1_A          164 KIWSVKDGSNPRTL-IG----HRATVTDIAIIDR-GRNVLSASL-----------------DGTIRLWECGTGTTIHTFN  220 (420)
T ss_dssp             EEEETTTCCCCEEE-EC----CSSCEEEEEEETT-TTEEEEEET-----------------TSCEEEEETTTTEEEEEEC
T ss_pred             EEEeCCCCcCceEE-cC----CCCcEEEEEEcCC-CCEEEEEcC-----------------CCcEEEeECCCCceeEEee
Confidence            8888876543 222 11    1234578999995 766655332                 3556666655554333222


Q ss_pred             C-------------------------CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeee
Q 048181          197 N-------------------------LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKR  250 (310)
Q Consensus       197 ~-------------------------l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~  250 (310)
                      .                         ....+.++|+|+|++| ++-...+.|..+++.... ....+ .........+++
T Consensus       221 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~  298 (420)
T 3vl1_A          221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV-IAGHVSGVITVHNVFSKE-QTIQLPSKFTCSCNSLTV  298 (420)
T ss_dssp             BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE-EEEETTSCEEEEETTTCC-EEEEECCTTSSCEEEEEE
T ss_pred             cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE-EEEcCCCeEEEEECCCCc-eeEEcccccCCCceeEEE
Confidence            1                         1334678889999755 555667889989875421 11111 222334667888


Q ss_pred             CCCCCCc-EEEEEe
Q 048181          251 NPGLLQT-FWEAAI  263 (310)
Q Consensus       251 d~~~dG~-l~va~~  263 (310)
                      ++  +|. +.++..
T Consensus       299 ~~--~~~~~l~~g~  310 (420)
T 3vl1_A          299 DG--NNANYIYAGY  310 (420)
T ss_dssp             CS--SCTTEEEEEE
T ss_pred             eC--CCCCEEEEEe
Confidence            88  887 444443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.16  E-value=0.00081  Score=60.79  Aligned_cols=180  Identities=7%  Similarity=-0.006  Sum_probs=105.9

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-e
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-D  112 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d  112 (310)
                      -.+++|.+++. +++...+|.|.-++.+.+.  ......                .......-..+++. ++|+++++ .
T Consensus        85 v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~----------------~~~H~~~V~~v~~s-pdg~~l~sgs  146 (344)
T 4gqb_B           85 VADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFC----------------KYEHDDIVSTVSVL-SSGTQAVSGS  146 (344)
T ss_dssp             EEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEE----------------EECCSSCEEEEEEC-TTSSEEEEEE
T ss_pred             EEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeecc----------------ccCCCCCEEEEEEC-CCCCEEEEEe
Confidence            45789999876 5677789998888765322  111100                00112234678997 67766654 3


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ....|...|.++++.....   .+ +-...+.+++++++..++++-.                 .+|.|..+|..+++..
T Consensus       147 ~d~~i~iwd~~~~~~~~~~---~~-h~~~V~~~~~~~~~~~~l~s~s-----------------~D~~v~iwd~~~~~~~  205 (344)
T 4gqb_B          147 KDICIKVWDLAQQVVLSSY---RA-HAAQVTCVAASPHKDSVFLSCS-----------------EDNRILLWDTRCPKPA  205 (344)
T ss_dssp             TTSCEEEEETTTTEEEEEE---CC-CSSCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTSSSCE
T ss_pred             CCCeEEEEECCCCcEEEEE---cC-cCCceEEEEecCCCCCceeeec-----------------ccccccccccccccee
Confidence            3444888898877643222   22 1234578888885335666543                 2467888887766543


Q ss_pred             Eeec---CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCc
Q 048181          193 VLLR---NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQT  257 (310)
Q Consensus       193 ~~~~---~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~  257 (310)
                      ....   .-...+.++++|++..++++-...+.|..+++...+ -...+..-......+++.+  +|.
T Consensus       206 ~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~fsp--~g~  270 (344)
T 4gqb_B          206 SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLSSAVHSQCVTGLVFSP--HSV  270 (344)
T ss_dssp             EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECS--SSS
T ss_pred             eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-EEEEEcCCCCCEEEEEEcc--CCC
Confidence            3221   123467899999776688887888999999875321 1111122222345677777  763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.16  E-value=0.0014  Score=59.21  Aligned_cols=208  Identities=12%  Similarity=0.009  Sum_probs=123.3

Q ss_pred             CCcceEEEccC----C---CEEEEEeCCCeEEEEECCCce-------EEeeeecCCCCccccCCCccccCCCC--CCcee
Q 048181           34 FGGESIAFEPV----G---GAFYTGVADGRILKYQAPDGF-------TDFAFTTPTRSKAVCDGTTNLDLGPI--CRRTF   97 (310)
Q Consensus        34 ~~Pegia~d~~----G---~l~~~d~~~g~I~r~~~~g~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~P~   97 (310)
                      ....+++|.++    |   .++++...++.|..++...+.       ..+.            +     ....  .....
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~v~  125 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD------------L-----LDSDMKKHSFW  125 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC------------C-----SCTTGGGSCEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec------------c-----cccccCCCcEE
Confidence            34678999998    8   888888888988887754221       1110            0     0000  24566


Q ss_pred             eEEEe----cCCCe-EEEEeCCCcEEEEeCCC------Ce-EE-----Eeec--cCCCccccCccceEEeCCCCeEEEEc
Q 048181           98 GLALH----YATRQ-LYIADAYSGLLVVGPNG------RL-AT-----QLAT--GAEGQAFHFLDGLDVDQGTGVVYFTD  158 (310)
Q Consensus        98 Gla~d----~~~g~-LyVad~~~gi~~id~~~------~~-~~-----~~~~--~~~g~~~~~pndvavd~~~G~lyvtd  158 (310)
                      .+++.    +.... |+++.....|..+|...      ++ +.     .+..  ......-.....++++++ | ++++-
T Consensus       126 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~  203 (397)
T 1sq9_A          126 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATG  203 (397)
T ss_dssp             EEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEE
T ss_pred             EEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC-c-eEEEE
Confidence            88886    44444 55555444466666554      21 11     2211  000112344678999995 7 55553


Q ss_pred             CCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecC-------CCCCceeEEccCCCEEEEEecCC---CeEEEEEe
Q 048181          159 ASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRN-------LTGPAGVAISVDSSFLLVSEFTG---NRTLKYWL  228 (310)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~-------l~~pnGIa~~~dg~~Lyv~d~~~---~~I~~~~~  228 (310)
                      .                 .+|.+..+|..+++.......       -.....++|+|++++|+++ ...   +.|..+++
T Consensus       204 ~-----------------~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~-~~d~~~g~i~i~d~  265 (397)
T 1sq9_A          204 F-----------------NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYET  265 (397)
T ss_dssp             C-----------------TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE-EEETTEEEEEEEET
T ss_pred             e-----------------CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE-ecCCCCceEEEEEC
Confidence            3                 247788888876665444443       4456899999999866554 444   78888887


Q ss_pred             cCCCCCceee-ec-------------CCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEe
Q 048181          229 RGPRANSFDI-IN-------------FQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTIS  290 (310)
Q Consensus       229 ~~~~~g~~~~-~~-------------l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~  290 (310)
                      ...  ..... ..             .......+++++  +|.+.++....        +.+..+|. .++.+..+.
T Consensus       266 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          266 EFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND--SGETLCSAGWD--------GKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             TTC--CEEEEECBC--------CCBSBSSCEEEEEECS--SSSEEEEEETT--------SEEEEEETTTTEEEEEEE
T ss_pred             CCC--cccceeccCcccccccccccccCCcEEEEEECC--CCCEEEEEeCC--------CeEEEEEcCCCceeEEEe
Confidence            532  11111 22             233457799998  99876665543        36777884 688888887

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.16  E-value=0.0028  Score=57.07  Aligned_cols=208  Identities=13%  Similarity=0.054  Sum_probs=116.2

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEe
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIAD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad  112 (310)
                      ....+++.|+|..+.+...++.+..++..... ....         .    ....+.........+++. +++ .|+.+.
T Consensus       108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~---------~----~~~~~~~h~~~v~~~~~~-~~~~~l~t~s  173 (354)
T 2pbi_B          108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA---------A----KKKSVAMHTNYLSACSFT-NSDMQILTAS  173 (354)
T ss_dssp             CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG---------G----GCEEEEECSSCEEEEEEC-SSSSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc---------c----cceeeeccCCcEEEEEEe-CCCCEEEEEe
Confidence            45688899999988888888888777653210 0000         0    000000112234577886 455 455555


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCC-CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG-TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~-~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      ....|..+|.++++......   +. -.....+++.+. +|+.+++-.                 .+|.+..+|..+++.
T Consensus       174 ~D~~v~lwd~~~~~~~~~~~---~h-~~~v~~~~~~~~~~g~~l~sgs-----------------~Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          174 GDGTCALWDVESGQLLQSFH---GH-GADVLCLDLAPSETGNTFVSGG-----------------CDKKAMVWDMRSGQC  232 (354)
T ss_dssp             TTSEEEEEETTTCCEEEEEE---CC-SSCEEEEEECCCSSCCEEEEEE-----------------TTSCEEEEETTTCCE
T ss_pred             CCCcEEEEeCCCCeEEEEEc---CC-CCCeEEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCcE
Confidence            55457788887765432211   11 112345666552 255555532                 247888888877765


Q ss_pred             EEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e--cCCCCCceeeeCCCCCCcEEEEEecCCC
Q 048181          192 TVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I--NFQAKPHNIKRNPGLLQTFWEAAIITRQ  267 (310)
Q Consensus       192 ~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~--~l~g~Pdgl~~d~~~dG~l~va~~~~~~  267 (310)
                      ..... .-...+.++|+|+++ ++++-+..+.|+.+++...  ..... .  ........+++.+  +|.+.++....+ 
T Consensus       233 ~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~--~~~~~~~~~~~~~~~~~~~~s~--~g~~l~~g~~d~-  306 (354)
T 2pbi_B          233 VQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRAD--REVAIYSKESIIFGASSVDFSL--SGRLLFAGYNDY-  306 (354)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECT--TSSEEEEEETTS-
T ss_pred             EEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCC--cEEEEEcCCCcccceeEEEEeC--CCCEEEEEECCC-
Confidence            43333 234568999999998 5566667888888887532  11111 1  1111245688888  888766655432 


Q ss_pred             CCCCCceeeEEECC-CCcEEEEEe
Q 048181          268 PAGTPVPIGQRISA-FGAVLDTIS  290 (310)
Q Consensus       268 ~~~~~~~~v~~~~~-~G~~~~~~~  290 (310)
                             .+..+|. +|+.+..+.
T Consensus       307 -------~i~vwd~~~~~~~~~l~  323 (354)
T 2pbi_B          307 -------TINVWDVLKGSRVSILF  323 (354)
T ss_dssp             -------CEEEEETTTCSEEEEEC
T ss_pred             -------cEEEEECCCCceEEEEE
Confidence                   4555553 455554443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.15  E-value=0.0023  Score=63.07  Aligned_cols=204  Identities=14%  Similarity=0.113  Sum_probs=125.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-Ee
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-AD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad  112 (310)
                      ....++++.++|+++++...++.|..++...+.......                  ........++++ ++++.++ +.
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~------------------~h~~~v~~~~~s-~~~~~l~s~s  491 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV------------------GHTKDVLSVAFS-LDNRQIVSAS  491 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------------------CCSSCEEEEEEC-TTSSCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe------------------CCCCCEEEEEEe-CCCCEEEEEe
Confidence            446689999999988999899999999987543221110                  112345678887 5565444 44


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC--eEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG--VVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G--~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      ....|...|..+.....+.....+ +-...+.++++++ +  ..+++-+                 .+|.|..+|..+++
T Consensus       492 ~D~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~~~l~s~s-----------------~d~~v~vwd~~~~~  552 (694)
T 3dm0_A          492 RDRTIKLWNTLGECKYTISEGGEG-HRDWVSCVRFSPN-TLQPTIVSAS-----------------WDKTVKVWNLSNCK  552 (694)
T ss_dssp             TTSCEEEECTTSCEEEEECSSTTS-CSSCEEEEEECSC-SSSCEEEEEE-----------------TTSCEEEEETTTCC
T ss_pred             CCCEEEEEECCCCcceeeccCCCC-CCCcEEEEEEeCC-CCcceEEEEe-----------------CCCeEEEEECCCCc
Confidence            444577778765443333222222 2234567888884 4  3444432                 24677778876665


Q ss_pred             EEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCC
Q 048181          191 VTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQP  268 (310)
Q Consensus       191 ~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~  268 (310)
                      ...... .-...+.++++|||+ ++++-+..+.|..+++..   +.... .........+++.+  +|.+.++....   
T Consensus       553 ~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~---~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~~---  623 (694)
T 3dm0_A          553 LRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAE---GKKLYSLEANSVIHALCFSP--NRYWLCAATEH---  623 (694)
T ss_dssp             EEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTT---TEEEECCBCSSCEEEEEECS--SSSEEEEEETT---
T ss_pred             EEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC---CceEEEecCCCcEEEEEEcC--CCcEEEEEcCC---
Confidence            544333 334568999999998 556666788888888753   22211 22223466789998  88877766543   


Q ss_pred             CCCCceeeEEECC-CCcEEEEEe
Q 048181          269 AGTPVPIGQRISA-FGAVLDTIS  290 (310)
Q Consensus       269 ~~~~~~~v~~~~~-~G~~~~~~~  290 (310)
                            .+..+|- .++++..+.
T Consensus       624 ------~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          624 ------GIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             ------EEEEEETTTTEEEEEEC
T ss_pred             ------CEEEEECCCCCChhhhc
Confidence                  4666774 456666554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.15  E-value=0.0024  Score=63.54  Aligned_cols=155  Identities=11%  Similarity=0.007  Sum_probs=97.7

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEe
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad  112 (310)
                      ....+++|+|+|.++.+...+|.|..++...+......                  .........++++ ++++ |.++.
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~------------------~~~~~~v~~~~~s-~~~~~l~~~~   74 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI------------------QVTETPVRAGKFI-ARKNWIIVGS   74 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE------------------ECCSSCEEEEEEE-GGGTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE------------------ecCCCcEEEEEEe-CCCCEEEEEe
Confidence            35789999999998888888999999997644321110                  0122345689998 4555 44454


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC-eE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS-QV  191 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g-~~  191 (310)
                      ....|..++.++++.......    .-.....++++++ |...++-.                 .+|.+..+|..++ ..
T Consensus        75 ~dg~i~vw~~~~~~~~~~~~~----~~~~v~~~~~s~~-~~~l~~~~-----------------~dg~i~vw~~~~~~~~  132 (814)
T 3mkq_A           75 DDFRIRVFNYNTGEKVVDFEA----HPDYIRSIAVHPT-KPYVLSGS-----------------DDLTVKLWNWENNWAL  132 (814)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSS-SSEEEEEE-----------------TTSEEEEEEGGGTSEE
T ss_pred             CCCeEEEEECCCCcEEEEEec----CCCCEEEEEEeCC-CCEEEEEc-----------------CCCEEEEEECCCCceE
Confidence            444588888877654322221    1234578999995 76544422                 2366777776544 33


Q ss_pred             EE-eecCCCCCceeEEcc-CCCEEEEEecCCCeEEEEEecC
Q 048181          192 TV-LLRNLTGPAGVAISV-DSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       192 ~~-~~~~l~~pnGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      .. +...-.....++|+| +++ ++++-+..+.|+.+++..
T Consensus       133 ~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~  172 (814)
T 3mkq_A          133 EQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQ  172 (814)
T ss_dssp             EEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTC
T ss_pred             EEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Confidence            22 223334568999999 665 566667788999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.13  E-value=0.001  Score=60.04  Aligned_cols=155  Identities=12%  Similarity=0.058  Sum_probs=98.5

Q ss_pred             CCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-
Q 048181           34 FGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-  110 (310)
Q Consensus        34 ~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-  110 (310)
                      ....+++|.+ +++++++...++.|..++..++.. .+..                 ..........+++. +++++++ 
T Consensus       119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~v~~~~~~-~~~~~l~~  180 (383)
T 3ei3_B          119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAK-----------------TDSWDYWYCCVDVS-VSRQMLAT  180 (383)
T ss_dssp             CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEEC-----------------CCCSSCCEEEEEEE-TTTTEEEE
T ss_pred             CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEec-----------------cCCCCCCeEEEEEC-CCCCEEEE
Confidence            4566899998 678888888899999998875432 2210                 00112345688997 5555544 


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEcCCC-
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS-  188 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~-  188 (310)
                      +.....|..+|..+.....+..     .....+.++++++ +. ++++-..                 +|.|..+|..+ 
T Consensus       181 ~~~d~~i~i~d~~~~~~~~~~~-----h~~~v~~~~~~~~-~~~~l~s~~~-----------------d~~i~iwd~~~~  237 (383)
T 3ei3_B          181 GDSTGRLLLLGLDGHEIFKEKL-----HKAKVTHAEFNPR-CDWLMATSSV-----------------DATVKLWDLRNI  237 (383)
T ss_dssp             EETTSEEEEEETTSCEEEEEEC-----SSSCEEEEEECSS-CTTEEEEEET-----------------TSEEEEEEGGGC
T ss_pred             ECCCCCEEEEECCCCEEEEecc-----CCCcEEEEEECCC-CCCEEEEEeC-----------------CCEEEEEeCCCC
Confidence            4444458888886544444321     1234678999995 76 6665432                 36677777654 


Q ss_pred             ---CeEEEeecCCCCCceeEEcc-CCCEEEEEecCCCeEEEEEecC
Q 048181          189 ---SQVTVLLRNLTGPAGVAISV-DSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       189 ---g~~~~~~~~l~~pnGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                         +........-.....++|+| +|+.| ++-...+.|..+++..
T Consensus       238 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l-~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          238 KDKNSYIAEMPHEKPVNAAYFNPTDSTKL-LTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             CSTTCEEEEEECSSCEEEEEECTTTSCEE-EEEESSSEEEEEETTB
T ss_pred             CcccceEEEecCCCceEEEEEcCCCCCEE-EEEcCCCcEEEEECCC
Confidence               33333334445678999999 99855 4556678999998864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.12  E-value=0.0016  Score=64.77  Aligned_cols=186  Identities=11%  Similarity=0.015  Sum_probs=111.6

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEe
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad  112 (310)
                      ....+++|.++|.++++...++.|..++...+......                  .........+++. +++. |+++.
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~------------------~~~~~~v~~~~~s-~~~~~l~~~~  116 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF------------------EAHPDYIRSIAVH-PTKPYVLSGS  116 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE------------------ECCSSCEEEEEEC-SSSSEEEEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE------------------ecCCCCEEEEEEe-CCCCEEEEEc
Confidence            35678999999998888888999999997643321111                  0122346688997 5664 55455


Q ss_pred             CCCcEEEEeCCCC-eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AYSGLLVVGPNGR-LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~~gi~~id~~~~-~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      ....|..++.+++ ........    .-.....++++|++++.+++-.                 .+|.|..+|..+++.
T Consensus       117 ~dg~i~vw~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~-----------------~dg~v~vwd~~~~~~  175 (814)
T 3mkq_A          117 DDLTVKLWNWENNWALEQTFEG----HEHFVMCVAFNPKDPSTFASGC-----------------LDRTVKVWSLGQSTP  175 (814)
T ss_dssp             TTSEEEEEEGGGTSEEEEEEEC----CSSCEEEEEEETTEEEEEEEEE-----------------TTSEEEEEETTCSSC
T ss_pred             CCCEEEEEECCCCceEEEEEcC----CCCcEEEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCcc
Confidence            4444777777654 32222211    1123567889883366665533                 246788888654433


Q ss_pred             EE-eecC-CCCCceeEEcc--CCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          192 TV-LLRN-LTGPAGVAISV--DSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       192 ~~-~~~~-l~~pnGIa~~~--dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .. +... ....+.++++|  +++. +++-...+.|..+++....  .... ..-.+....+++.+  +|.+.++...
T Consensus       176 ~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~  248 (814)
T 3mkq_A          176 NFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHP--TLPIIISGSE  248 (814)
T ss_dssp             SEEEECCCTTCCCEEEECCSTTCCE-EEEECTTSEEEEEETTTTE--EEEEEECCSSCEEEEEECS--SSSEEEEEET
T ss_pred             eeEEecCCCCCEEEEEEEECCCCCE-EEEEeCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcC--CCCEEEEEeC
Confidence            22 2222 24568999999  8874 5555677889988875321  1111 22223456788888  8876655544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.12  E-value=0.00012  Score=66.05  Aligned_cols=197  Identities=9%  Similarity=-0.051  Sum_probs=104.8

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      .+.-....+++|.++|+++++...++.|..++...+.  ....                 ...........+++. ++++
T Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-----------------~~~~~~~~v~~~~~~-~~~~  113 (377)
T 3dwl_C           52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL-----------------VLLRLNRAATFVRWS-PNED  113 (377)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEE-----------------ECCCCSSCEEEEECC-TTSS
T ss_pred             ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee-----------------EecccCCceEEEEEC-CCCC
Confidence            3333456789999999988888888988888766432  1110                 011123345678886 4555


Q ss_pred             -EEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          108 -LYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       108 -LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                       |+.+.....|..+|.++++...+.....+..-...+.++++++ |+++++-..                 +|.+..+|.
T Consensus       114 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~-----------------d~~i~iwd~  175 (377)
T 3dwl_C          114 KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN-NVLLAAGCA-----------------DRKAYVLSA  175 (377)
T ss_dssp             CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT-SSEEEEEES-----------------SSCEEEEEE
T ss_pred             EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC-CCEEEEEeC-----------------CCEEEEEEE
Confidence             4445444447777776654100111111112245678999994 776665432                 244555553


Q ss_pred             CC------------------CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCc--ee-eecCCCCC
Q 048181          187 RS------------------SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANS--FD-IINFQAKP  245 (310)
Q Consensus       187 ~~------------------g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~--~~-~~~l~g~P  245 (310)
                      .+                  ++.......-...+.++|+|||++| ++-...+.|..+++.......  .. +..-....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v  254 (377)
T 3dwl_C          176 YVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNAL-AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPL  254 (377)
T ss_dssp             CCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCE-EEEETTTEEC-CEECSTTSCEEECCCEECSSSCE
T ss_pred             EecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEE-EEEeCCCcEEEEECCCCCCcceeeEeecCCCCce
Confidence            21                  1111111222345789999999854 455677888888886532100  11 12222335


Q ss_pred             ceeeeCCCCCCcEEEEEecC
Q 048181          246 HNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       246 dgl~~d~~~dG~l~va~~~~  265 (310)
                      ..+++.+  +|.+.++....
T Consensus       255 ~~~~~s~--~~~~l~~~~~~  272 (377)
T 3dwl_C          255 RSLLWAN--ESAIVAAGYNY  272 (377)
T ss_dssp             EEEEEEE--TTEEEEEESSS
T ss_pred             EEEEEcC--CCCEEEEEcCC
Confidence            7789998  99877776543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.12  E-value=0.0039  Score=55.40  Aligned_cols=191  Identities=8%  Similarity=0.046  Sum_probs=106.6

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEEE-
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLYI-  110 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~LyV-  110 (310)
                      ....+++|.++|.++++...++.|..++.... ......                 +.........+++.+. ++++++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------------~~~h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT-----------------LTGHEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE-----------------ECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeE-----------------ecCCCCcEEEEEeCCCCCCCEEEE
Confidence            34668999999998888888898888876522 211110                 0112234467888522 155544 


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCC-CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGT-GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~-G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      +.....|..+|..+++...+... .+ .-.....++++++. +.++++-.                 .+|.+..+|..++
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~~~~  135 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVAS-----------------SDGKVSVVEFKEN  135 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEECCTT
T ss_pred             eccCCEEEEEEcCCCceeEeeee-cC-CCcceEEEEeCCCCCCCEEEEec-----------------CCCcEEEEecCCC
Confidence            44444477777777653222211 11 12346788898831 55554432                 2366777776544


Q ss_pred             e---EEEeecCCCCCceeEEcc-------------CCCEEEEEecCCCeEEEEEecCCCCCceee-ecC---CCCCceee
Q 048181          190 Q---VTVLLRNLTGPAGVAISV-------------DSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF---QAKPHNIK  249 (310)
Q Consensus       190 ~---~~~~~~~l~~pnGIa~~~-------------dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l---~g~Pdgl~  249 (310)
                      .   ...+...-...+.++++|             +++ ++++-+..+.|+.+++.... ..... ..+   .+....++
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~h~~~v~~~~  213 (379)
T 3jrp_A          136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDA-QTYVLESTLEGHSDWVRDVA  213 (379)
T ss_dssp             SCCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTT-TEEEEEEEECCCSSCEEEEE
T ss_pred             CceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCC-cceeeEEEEecccCcEeEEE
Confidence            1   222223333457899999             677 45555667888888886432 11111 111   23355677


Q ss_pred             eCCCCC---CcEEEEEec
Q 048181          250 RNPGLL---QTFWEAAII  264 (310)
Q Consensus       250 ~d~~~d---G~l~va~~~  264 (310)
                      +.+  +   |++.++...
T Consensus       214 ~sp--~~~~~~~l~s~~~  229 (379)
T 3jrp_A          214 WSP--TVLLRSYLASVSQ  229 (379)
T ss_dssp             ECC--CCSSSEEEEEEET
T ss_pred             ECC--CCCCCCeEEEEeC
Confidence            777  7   665555443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.11  E-value=0.00037  Score=64.64  Aligned_cols=205  Identities=12%  Similarity=0.035  Sum_probs=124.9

Q ss_pred             CCcceEEEccCCC-EEEEEeCCCeEEEEECCCce---EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           34 FGGESIAFEPVGG-AFYTGVADGRILKYQAPDGF---TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        34 ~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ....+++|.+++. ++++...+|.|..++.....   ..+..              ...+.........+++++.++.++
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------------~~~~~~h~~~v~~v~~~p~~~~~l  247 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA--------------KNIFTGHTAVVEDVAWHLLHESLF  247 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEEC--------------SEEECCCSSCEEEEEECSSCTTEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceecc--------------ceeecCCCCCEeeeEEeCCCCCEE
Confidence            3567899999987 88888889999999876411   11000              000112233467899974467777


Q ss_pred             EEeCC-CcEEEEeCCCCe----EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          110 IADAY-SGLLVVGPNGRL----ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       110 Vad~~-~gi~~id~~~~~----~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      ++... ..|..+|..++.    ...+ ..    .-..++.+++++++..++++-..                 +|.|..+
T Consensus       248 ~s~~~dg~i~i~d~~~~~~~~~~~~~-~~----~~~~v~~i~~~p~~~~~l~tg~~-----------------dg~v~vw  305 (430)
T 2xyi_A          248 GSVADDQKLMIWDTRNNNTSKPSHTV-DA----HTAEVNCLSFNPYSEFILATGSA-----------------DKTVALW  305 (430)
T ss_dssp             EEEETTSEEEEEETTCSCSSSCSEEE-EC----CSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCCCcceeEe-ec----CCCCeEEEEeCCCCCCEEEEEeC-----------------CCeEEEE
Confidence            66544 347788877542    1222 11    12346889999953346666432                 4677778


Q ss_pred             cCCCC--eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC---------ceee----ecCCCCCceee
Q 048181          185 NPRSS--QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN---------SFDI----INFQAKPHNIK  249 (310)
Q Consensus       185 d~~~g--~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g---------~~~~----~~l~g~Pdgl~  249 (310)
                      |..+.  .+..+...-.....|+|+|+++.++++-...++|..+++......         ..++    .+-...+..++
T Consensus       306 d~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  385 (430)
T 2xyi_A          306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  385 (430)
T ss_dssp             ETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEE
T ss_pred             eCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEE
Confidence            76542  233333334456899999999888888888899999998742110         0111    11223578899


Q ss_pred             eCCCCCCc-EEEEEecCCCCCCCCceeeEEECCCCc
Q 048181          250 RNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAFGA  284 (310)
Q Consensus       250 ~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~G~  284 (310)
                      +.+  +|. ++++....+        .+..++.+..
T Consensus       386 ~~p--~~~~~l~s~s~dg--------~i~iw~~~~~  411 (430)
T 2xyi_A          386 WNP--NEPWIICSVSEDN--------IMQVWQMAEN  411 (430)
T ss_dssp             ECS--SSTTEEEEEETTS--------EEEEEEECHH
T ss_pred             ECC--CCCCEEEEEECCC--------CEEEeEcccc
Confidence            999  887 666655432        5666665433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.11  E-value=0.0011  Score=63.32  Aligned_cols=206  Identities=10%  Similarity=0.014  Sum_probs=121.4

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCc----eEEeeeecCCCCccccCCCccccCCCCCCc-eeeEEEecC--CC
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDG----FTDFAFTTPTRSKAVCDGTTNLDLGPICRR-TFGLALHYA--TR  106 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-P~Gla~d~~--~g  106 (310)
                      ..+..++|+++|+++++.. ++.|..++.+.+    .....                  +...... ...+++. +  ++
T Consensus        19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~------------------~~~h~~~~v~~~~~s-p~~~~   78 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ------------------FTGHGSSVVTTVKFS-PIKGS   78 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE------------------ECTTTTSCEEEEEEC-SSTTC
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE------------------EecCCCceEEEEEEC-cCCCC
Confidence            4577899999999766665 778888887643    11111                  0112234 6789997 5  66


Q ss_pred             eEEE-EeCCCcEEEEeCCCC------eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181          107 QLYI-ADAYSGLLVVGPNGR------LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       107 ~LyV-ad~~~gi~~id~~~~------~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      ++++ +.....|..++..++      +...+ ....+ .-...+.++++++ |+..++-...             ....+
T Consensus        79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~s~~-~~~l~~~~~~-------------~~~~~  142 (615)
T 1pgu_A           79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVK-SEFQV-LAGPISDISWDFE-GRRLCVVGEG-------------RDNFG  142 (615)
T ss_dssp             CEEEEEETTSEEEEEEEEEEGGGTEEEEEEE-EEEEC-CSSCEEEEEECTT-SSEEEEEECC-------------SSCSE
T ss_pred             CEEEEecCCCEEEEEeCCCCccccccccccc-chhhc-ccccEEEEEEeCC-CCEEEEeccC-------------CCCcc
Confidence            6555 444434666666433      11111 11111 1234678999995 7655543221             11236


Q ss_pred             eEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCC---CCceeeeCCCC
Q 048181          180 RLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQA---KPHNIKRNPGL  254 (310)
Q Consensus       180 ~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g---~Pdgl~~d~~~  254 (310)
                      .++.+|.. .....+...-...+.++|+|+++.++++-...+.|..+++..   +....  ..-..   ....+++.+  
T Consensus       143 ~v~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~--  216 (615)
T 1pgu_A          143 VFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTHHKQGSFVRDVEFSP--  216 (615)
T ss_dssp             EEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEECSSSCTTCCEEEEEECS--
T ss_pred             EEEEEECC-CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeeecccCCCCceEEEEEECC--
Confidence            77777732 333334334445689999999986777777889999888643   22211  11222   356789998  


Q ss_pred             C-CcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEE
Q 048181          255 L-QTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTI  289 (310)
Q Consensus       255 d-G~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~  289 (310)
                      + |++.++....        +.+..+| .+|+.+..+
T Consensus       217 ~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          217 DSGEFVITVGSD--------RKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             TTCCEEEEEETT--------CCEEEEETTTCCEEEEC
T ss_pred             CCCCEEEEEeCC--------CeEEEEECCCCCEeEEe
Confidence            8 8766655443        2577777 457777766

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.11  E-value=0.0005  Score=60.69  Aligned_cols=212  Identities=11%  Similarity=0.031  Sum_probs=123.0

Q ss_pred             CCcceEEEccCCC-EEEEEeCCCeEEEEEC-CCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           34 FGGESIAFEPVGG-AFYTGVADGRILKYQA-PDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        34 ~~Pegia~d~~G~-l~~~d~~~g~I~r~~~-~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      ....+++|.++++ ++++...++.|..++. .++.. .+.            +      .........+++.+ ...|+.
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------------~------~~~~~~v~~l~~~~-~~~l~s  117 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT------------N------NEANLGICRICKYG-DDKLIA  117 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB------------S------CCCCSCEEEEEEET-TTEEEE
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecc------------c------cCCCCceEEEEeCC-CCEEEE
Confidence            4577899999999 8889888999999987 64432 211            0      00223456889974 444554


Q ss_pred             EeCCCcEEEEeCCC---------CeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          111 ADAYSGLLVVGPNG---------RLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       111 ad~~~gi~~id~~~---------~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                      +.....|..+|..+         ++.   .....  .-..+..++++++ + ++++..                  +|.|
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~--~~~~v~~~~~~~~-~-l~~~~~------------------d~~i  172 (342)
T 1yfq_A          118 ASWDGLIEVIDPRNYGDGVIAVKNLN---SNNTK--VKNKIFTMDTNSS-R-LIVGMN------------------NSQV  172 (342)
T ss_dssp             EETTSEEEEECHHHHTTBCEEEEESC---SSSSS--SCCCEEEEEECSS-E-EEEEES------------------TTEE
T ss_pred             EcCCCeEEEEcccccccccccccCCe---eeEEe--eCCceEEEEecCC-c-EEEEeC------------------CCeE
Confidence            55444477777553         221   11111  1234567888873 5 555432                  3667


Q ss_pred             EEEcCCC-Ce--EEEee-cCCCCCceeEEcc-CCCEEEEEecCCCeEEEEEecCC--C---CCceeeecC---------C
Q 048181          182 LSYNPRS-SQ--VTVLL-RNLTGPAGVAISV-DSSFLLVSEFTGNRTLKYWLRGP--R---ANSFDIINF---------Q  242 (310)
Q Consensus       182 ~~~d~~~-g~--~~~~~-~~l~~pnGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~~--~---~g~~~~~~l---------~  242 (310)
                      ..+|..+ +.  ..... ..-.....++++| +++.+ ++-...+.|..++++..  .   .....+...         .
T Consensus       173 ~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T 1yfq_A          173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY-ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE-EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEECCccccccceeeecCCCCceeEEEECCCCCCEE-EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccc
Confidence            7777765 32  22222 2223568999999 99854 45556788888777642  0   111111111         1


Q ss_pred             CCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecC-CCccccceeEEE
Q 048181          243 AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE-AQYSTTPISEVQ  304 (310)
Q Consensus       243 g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p-~~~~~~~~t~~~  304 (310)
                      +....+++++  +|.+.++....        +.+..+|. +|+.+..+... .+    .|+.+.
T Consensus       252 ~~i~~~~~s~--~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~h~~----~v~~~~  301 (342)
T 1yfq_A          252 YPVNSIEFSP--RHKFLYTAGSD--------GIISCWNLQTRKKIKNFAKFNED----SVVKIA  301 (342)
T ss_dssp             CCEEEEEECT--TTCCEEEEETT--------SCEEEEETTTTEEEEECCCCSSS----EEEEEE
T ss_pred             eeEEEEEEcC--CCCEEEEecCC--------ceEEEEcCccHhHhhhhhcccCC----CceEec
Confidence            1456788998  88765554443        25777775 47776665543 32    455555

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.08  E-value=0.0011  Score=59.99  Aligned_cols=97  Identities=11%  Similarity=0.063  Sum_probs=61.8

Q ss_pred             CceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ec-CC-CCCceeeeCCCC
Q 048181          178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-IN-FQ-AKPHNIKRNPGL  254 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~-l~-g~Pdgl~~d~~~  254 (310)
                      +|.++.+|+.+|+..-. .......+++.+  ++.||++.. .+.|+.++...   |+..- .. +. .......+.   
T Consensus       248 ~g~l~~~d~~tG~~~w~-~~~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~---  317 (376)
T 3q7m_A          248 NGNLTALDLRSGQIMWK-RELGSVNDFIVD--GNRIYLVDQ-NDRVMALTIDG---GVTLWTQSDLLHRLLTSPVLY---  317 (376)
T ss_dssp             TSCEEEEETTTCCEEEE-ECCCCEEEEEEE--TTEEEEEET-TCCEEEEETTT---CCEEEEECTTTTSCCCCCEEE---
T ss_pred             CcEEEEEECCCCcEEee-ccCCCCCCceEE--CCEEEEEcC-CCeEEEEECCC---CcEEEeecccCCCcccCCEEE---
Confidence            46799999988875422 233345566665  456888764 66799998753   33221 11 21 122334454   


Q ss_pred             CCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCC
Q 048181          255 LQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEA  293 (310)
Q Consensus       255 dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~  293 (310)
                      +|.||++....         .+.++|+ +|+++..+..+.
T Consensus       318 ~~~l~v~~~~g---------~l~~~d~~tG~~~~~~~~~~  348 (376)
T 3q7m_A          318 NGNLVVGDSEG---------YLHWINVEDGRFVAQQKVDS  348 (376)
T ss_dssp             TTEEEEECTTS---------EEEEEETTTCCEEEEEECCT
T ss_pred             CCEEEEEeCCC---------eEEEEECCCCcEEEEEecCC
Confidence            57999998754         6999995 799999988853

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.03  E-value=0.00015  Score=65.25  Aligned_cols=156  Identities=7%  Similarity=-0.070  Sum_probs=86.4

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-Ee
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-AD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad  112 (310)
                      ...+++|.++|+++++...++.|..++..++. ....                 .+.........+++. +++++++ +.
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-----------------~~~~h~~~v~~~~~s-~~~~~l~s~s   74 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-----------------TFSDHDKIVTCVDWA-PKSNRIVTCS   74 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-----------------CBCCCSSCEEEEEEC-TTTCCEEEEE
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-----------------EEecCCceEEEEEEe-CCCCEEEEEe
Confidence            35688999999988777778888877765431 2111                 011122345688997 5565444 44


Q ss_pred             CCCcEEEEeCCCCe-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe-
Q 048181          113 AYSGLLVVGPNGRL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ-  190 (310)
Q Consensus       113 ~~~gi~~id~~~~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~-  190 (310)
                      ....|..+|..+++ ...... ..+ .-...+.++++++ |+.+++-..                 +|.+..+|..+++ 
T Consensus        75 ~d~~v~vwd~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~-~~~l~~~~~-----------------d~~i~iwd~~~~~~  134 (377)
T 3dwl_C           75 QDRNAYVYEKRPDGTWKQTLV-LLR-LNRAATFVRWSPN-EDKFAVGSG-----------------ARVISVCYFEQEND  134 (377)
T ss_dssp             TTSSEEEC------CCCCEEE-CCC-CSSCEEEEECCTT-SSCCEEEES-----------------SSCEEECCC-----
T ss_pred             CCCeEEEEEcCCCCceeeeeE-ecc-cCCceEEEEECCC-CCEEEEEec-----------------CCeEEEEEECCccc
Confidence            44457777776654 111111 111 1234578889984 665554322                 3567777765543 


Q ss_pred             ---EEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          191 ---VTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       191 ---~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                         ...+.. .-...+.++|+|+++.| ++-...+.|..+++.
T Consensus       135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          135 WWVSKHLKRPLRSTILSLDWHPNNVLL-AAGCADRKAYVLSAY  176 (377)
T ss_dssp             CCCCEEECSSCCSCEEEEEECTTSSEE-EEEESSSCEEEEEEC
T ss_pred             ceeeeEeecccCCCeEEEEEcCCCCEE-EEEeCCCEEEEEEEE
Confidence               233333 33456899999999854 555567788888874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.01  E-value=0.00046  Score=62.78  Aligned_cols=158  Identities=15%  Similarity=0.048  Sum_probs=93.4

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-eC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-DA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d~  113 (310)
                      ...+++|.|+|.++.+.. ++.+.++....+.......                ..........+++. ++|+.+++ ..
T Consensus       178 ~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~v~fs-pdg~~l~~~s~  239 (365)
T 4h5i_A          178 EVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKT----------------DFDKNWSLSKINFI-ADDTVLIAASL  239 (365)
T ss_dssp             CCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEEC----------------CCCTTEEEEEEEEE-ETTEEEEEEEE
T ss_pred             ceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeee----------------cCCCCCCEEEEEEc-CCCCEEEEEec
Confidence            367899999999665554 5667777655332211100                00112234578887 56666554 22


Q ss_pred             C--Cc--EEEEeCCCCeEEEee-ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          114 Y--SG--LLVVGPNGRLATQLA-TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       114 ~--~g--i~~id~~~~~~~~~~-~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      .  .+  ++.++.......... ....+ .....+.++++| +|++.++-+.                 +|.|..+|..+
T Consensus       240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Sp-dg~~lasgs~-----------------D~~V~iwd~~~  300 (365)
T 4h5i_A          240 KKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDM-KGELAVLASN-----------------DNSIALVKLKD  300 (365)
T ss_dssp             SSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECT-TSCEEEEEET-----------------TSCEEEEETTT
T ss_pred             CCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECC-CCCceEEEcC-----------------CCEEEEEECCC
Confidence            2  22  455565444322211 11111 223457899999 4887776432                 47788888877


Q ss_pred             CeEEE-eecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          189 SQVTV-LLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       189 g~~~~-~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      ++... +..+ -..-+.++|+|||+ ++++-+..+.|+.+++..
T Consensus       301 ~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          301 LSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCT
T ss_pred             CcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCC
Confidence            76533 3332 33458999999998 567778889998888753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.99  E-value=0.0051  Score=64.52  Aligned_cols=195  Identities=10%  Similarity=0.014  Sum_probs=117.6

Q ss_pred             EeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181           27 ILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR  106 (310)
Q Consensus        27 ~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g  106 (310)
                      +.+.+......+++|.++|.++++...++.|..++...+......                  .........++++ ++|
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~------------------~~h~~~v~~~~~s-~~~  669 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI------------------KAHEDEVLCCAFS-SDD  669 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------------------CCCSSCEEEEEEC-TTS
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe------------------ccCCCCEEEEEEe-cCC
Confidence            344444456778999999998888888999999997754322111                  1123345689997 566


Q ss_pred             eEEEE-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCC-CeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          107 QLYIA-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGT-GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       107 ~LyVa-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~-G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      +++++ .....|..+|..+++.......    +-...+.++++++. +.+.++-.                 .+|.+..+
T Consensus       670 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~sg~-----------------~d~~v~vw  728 (1249)
T 3sfz_A          670 SYIATCSADKKVKIWDSATGKLVHTYDE----HSEQVNCCHFTNKSNHLLLATGS-----------------NDFFLKLW  728 (1249)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSCCEEEEEE-----------------TTSCEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEcC----CCCcEEEEEEecCCCceEEEEEe-----------------CCCeEEEE
Confidence            65554 4444488888887654322221    12235677887731 33444432                 34778888


Q ss_pred             cCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC-ceeee-----------cCCCCCceeeeC
Q 048181          185 NPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN-SFDII-----------NFQAKPHNIKRN  251 (310)
Q Consensus       185 d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g-~~~~~-----------~l~g~Pdgl~~d  251 (310)
                      |..+++..... ..-...+.++|+|+++ ++++-+..+.|..+++...... .....           ........+++.
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  807 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS  807 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC
Confidence            87776644333 3334568999999998 4556667788888887642100 00000           011235567888


Q ss_pred             CCCCCcEEEEEec
Q 048181          252 PGLLQTFWEAAII  264 (310)
Q Consensus       252 ~~~dG~l~va~~~  264 (310)
                      +  +|...++...
T Consensus       808 ~--dg~~l~~~~~  818 (1249)
T 3sfz_A          808 A--DGDKIIVAAK  818 (1249)
T ss_dssp             T--TSSEEEEEET
T ss_pred             C--CCCEEEEEcC
Confidence            8  8877666543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.98  E-value=0.0064  Score=54.69  Aligned_cols=183  Identities=11%  Similarity=0.127  Sum_probs=110.2

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEEE-
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLYI-  110 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~LyV-  110 (310)
                      ...+++|.+++..+++...++.|..++...+..  .+.                    ........+++.+. +|++++ 
T Consensus       156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~--------------------~h~~~v~~~~~~~~~~g~~l~s  215 (354)
T 2pbi_B          156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--------------------GHGADVLCLDLAPSETGNTFVS  215 (354)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE--------------------CCSSCEEEEEECCCSSCCEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc--------------------CCCCCeEEEEEEeCCCCCEEEE
Confidence            346788999998888888999999999774322  221                    11123345666422 455554 


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      +.....|..+|..+++......   + +-...+.++++|+ |..+++-..                 +|.+..+|..+++
T Consensus       216 gs~Dg~v~~wd~~~~~~~~~~~---~-h~~~v~~v~~~p~-~~~l~s~s~-----------------D~~v~lwd~~~~~  273 (354)
T 2pbi_B          216 GGCDKKAMVWDMRSGQCVQAFE---T-HESDVNSVRYYPS-GDAFASGSD-----------------DATCRLYDLRADR  273 (354)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC---C-CSSCEEEEEECTT-SSEEEEEET-----------------TSCEEEEETTTTE
T ss_pred             EeCCCeEEEEECCCCcEEEEec---C-CCCCeEEEEEeCC-CCEEEEEeC-----------------CCeEEEEECCCCc
Confidence            4444458888987765432221   1 1234678999994 777766432                 4667777766554


Q ss_pred             EEEeecC---CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          191 VTVLLRN---LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       191 ~~~~~~~---l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .......   ......++|+|+|++| ++-...+.|..+++...  ..... .+-.+....+++.+  +|.+.++...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~s~~g~~l-~~g~~d~~i~vwd~~~~--~~~~~l~~h~~~v~~l~~sp--dg~~l~sgs~  346 (354)
T 2pbi_B          274 EVAIYSKESIIFGASSVDFSLSGRLL-FAGYNDYTINVWDVLKG--SRVSILFGHENRVSTLRVSP--DGTAFCSGSW  346 (354)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEE-EEEETTSCEEEEETTTC--SEEEEECCCSSCEEEEEECT--TSSCEEEEET
T ss_pred             EEEEEcCCCcccceeEEEEeCCCCEE-EEEECCCcEEEEECCCC--ceEEEEECCCCcEEEEEECC--CCCEEEEEcC
Confidence            3322221   1245789999999854 55556788888887431  11111 22233456788888  8876665443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.98  E-value=0.0014  Score=65.04  Aligned_cols=214  Identities=13%  Similarity=0.066  Sum_probs=117.3

Q ss_pred             ceEEEccCCCEE-EEEeCCC----eEEEEECCCceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           37 ESIAFEPVGGAF-YTGVADG----RILKYQAPDGFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        37 egia~d~~G~l~-~~d~~~g----~I~r~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      .+++|.|||+.+ |+....|    .|+.++.+++... ....                    .....++++.+++..||+
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--------------------~~~~~~~~wspDg~~l~~  187 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--------------------RVKFSCMAWTHDGKGMFY  187 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--------------------EECSCCEEECTTSSEEEE
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--------------------CcccceEEEEeCCCEEEE
Confidence            478999999744 4443333    7888888765422 1100                    001236888633345666


Q ss_pred             EeCCC----------------cEEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181          111 ADAYS----------------GLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus       111 ad~~~----------------gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      +....                .|++++..+++.  ..+......  -.+..++++++++..|+++-...           
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~--~~~~~~~~~SpDg~~l~~~~~~~-----------  254 (710)
T 2xdw_A          188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE--PKWMGGAELSDDGRYVLLSIREG-----------  254 (710)
T ss_dssp             EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC--TTCEEEEEECTTSCEEEEEEECS-----------
T ss_pred             EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC--CeEEEEEEEcCCCCEEEEEEEcc-----------
Confidence            54322                288888876542  222222111  12345788999633455543211           


Q ss_pred             eecCCCceEEEEcCCC------C--eEEEeecCCCCCceeEEccCCCEEEEEecC---CCeEEEEEecCCCCCc-eee-e
Q 048181          173 ITNDSTGRLLSYNPRS------S--QVTVLLRNLTGPAGVAISVDSSFLLVSEFT---GNRTLKYWLRGPRANS-FDI-I  239 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~------g--~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~---~~~I~~~~~~~~~~g~-~~~-~  239 (310)
                        ...+..|+.+|.++      +  ..+.+...... .--.+++||+.||+....   +.+|+++++++..... ..+ .
T Consensus       255 --~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          255 --CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             --SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             --CCCccEEEEEECcccccccCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence              01135688888754      4  34555443322 233588999988887543   4589999987532111 122 2


Q ss_pred             cCC-CCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCC
Q 048181          240 NFQ-AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQ  294 (310)
Q Consensus       240 ~l~-g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~  294 (310)
                      ... ....++++..  ++.++++.....      ...+.+++. +|+.+..+..|.+
T Consensus       332 ~~~~~~~~~~~~~~--~~~lv~~~~~~g------~~~l~~~~~~~g~~~~~l~~~~~  380 (710)
T 2xdw_A          332 EHEKDVLEWVACVR--SNFLVLCYLHDV------KNTLQLHDLATGALLKIFPLEVG  380 (710)
T ss_dssp             CCSSCEEEEEEEET--TTEEEEEEEETT------EEEEEEEETTTCCEEEEECCCSS
T ss_pred             CCCCCeEEEEEEEc--CCEEEEEEEECC------EEEEEEEECCCCCEEEecCCCCc
Confidence            211 1244677776  677766654432      246777886 7887777777644

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=0.0021  Score=59.69  Aligned_cols=156  Identities=9%  Similarity=0.057  Sum_probs=94.7

Q ss_pred             CcceEEEccCCCEE-EEEeCCCeEEEEECC--Cc-e-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eE
Q 048181           35 GGESIAFEPVGGAF-YTGVADGRILKYQAP--DG-F-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QL  108 (310)
Q Consensus        35 ~Pegia~d~~G~l~-~~d~~~g~I~r~~~~--g~-~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~L  108 (310)
                      ...+++|.++|..+ ++...++.|..++..  .+ . ..+..                  ......+..++++ +++ .|
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------~~~~~~v~~~~~s-p~~~~l  164 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------FCFSKRPNAISIA-EDDTTV  164 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------EECSSCEEEEEEC-TTSSEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------ccCCCCceEEEEc-CCCCEE
Confidence            46789999999875 667778888877754  32 2 22210                  0112356789997 455 45


Q ss_pred             EEEeCCCcEEEEeCCCCeEEE-eeccCCCccccCccceEEeCCC---CeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          109 YIADAYSGLLVVGPNGRLATQ-LATGAEGQAFHFLDGLDVDQGT---GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       109 yVad~~~gi~~id~~~~~~~~-~~~~~~g~~~~~pndvavd~~~---G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      ++++....++.++..++.... ......+ .....+.++++| +   ++++++-..                 ++.|..+
T Consensus       165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp-~~~~~~~l~s~~~-----------------d~~i~vw  225 (450)
T 2vdu_B          165 IIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIK-DSDGHQFIITSDR-----------------DEHIKIS  225 (450)
T ss_dssp             EEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEE-CTTSCEEEEEEET-----------------TSCEEEE
T ss_pred             EEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcC-CCCCCcEEEEEcC-----------------CCcEEEE
Confidence            556555458888876544221 0011111 223567899999 5   666655332                 3567777


Q ss_pred             cCCCCeEE-Eee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          185 NPRSSQVT-VLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       185 d~~~g~~~-~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      |..+++.. .+. ..-...+.++|+ |+++|+ +-...+.|..+++..
T Consensus       226 d~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~-s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          226 HYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL-SAGGDDKIFAWDWKT  271 (450)
T ss_dssp             EESCTTCEEEECCCCSSCEEEEEEC-STTEEE-EEESSSEEEEEETTT
T ss_pred             ECCCCceeeeeecCCCCceEEEEEC-CCCEEE-EEeCCCeEEEEECCC
Confidence            76555432 222 233456899999 998554 555788899888764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.96  E-value=0.00029  Score=63.62  Aligned_cols=192  Identities=11%  Similarity=-0.048  Sum_probs=99.1

Q ss_pred             cceEEEccCCCE-EEEEeC--CCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCcee-eEEEecCCCeEEEE
Q 048181           36 GESIAFEPVGGA-FYTGVA--DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTF-GLALHYATRQLYIA  111 (310)
Q Consensus        36 Pegia~d~~G~l-~~~d~~--~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~-Gla~d~~~g~LyVa  111 (310)
                      +.+++|.|+|+. +|+...  +..|+.++.+++......                   ....... ++++.+....|+++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-------------------~~~~~~~~~~~~spdg~~l~~~   98 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-------------------EGKGDNTFGGFISTDERAFFYV   98 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-------------------CSSCBCTTTCEECTTSSEEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-------------------cCCCCccccceECCCCCEEEEE
Confidence            567899999974 455433  347888887765432110                   0011111 35675333356555


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCC---------CccCcc-ceeEeee---ecCCC
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDAS---------GVYDFR-TIVKLNI---TNDST  178 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~---------~~~~~~-~~~~~~~---~~~~~  178 (310)
                      .....|+.++.++++.+.+.....+          ..+++..|+++...         ..+.+. .+. .+.   .....
T Consensus        99 ~~~~~l~~~d~~~~~~~~~~~~~~~----------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~-~~~~~~~~~~~  167 (396)
T 3c5m_A           99 KNELNLMKVDLETLEEQVIYTVDEE----------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWE-KFAEFYHTNPT  167 (396)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCTT----------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH-HHHHHHHTCCC
T ss_pred             EcCCcEEEEECCCCCcEEEEecccc----------cCCCCCEEEeccCCccccccccccccCCCCcce-eeeeeccCCCc
Confidence            5555699999988776555332111          11100111111100         000000 000 000   00234


Q ss_pred             ceEEEEcCCCCeEEEeecCCCCCceeEEcc-CCCEEEEEecC-C----CeEEEEEecCCCCCceee-ecCCC-CCceeee
Q 048181          179 GRLLSYNPRSSQVTVLLRNLTGPAGVAISV-DSSFLLVSEFT-G----NRTLKYWLRGPRANSFDI-INFQA-KPHNIKR  250 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~-dg~~Lyv~d~~-~----~~I~~~~~~~~~~g~~~~-~~l~g-~Pdgl~~  250 (310)
                      ..|+.+|..+++.+.+.........++|+| ||+.|+++... .    .+|+.+++++..  ...+ ...+. .+..+++
T Consensus       168 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~  245 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFW  245 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEE
T ss_pred             ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEE
Confidence            679999988888776665555667899999 78756554332 2    579999886531  1122 21111 2445688


Q ss_pred             CCCCCCc-EEEE
Q 048181          251 NPGLLQT-FWEA  261 (310)
Q Consensus       251 d~~~dG~-l~va  261 (310)
                      ++  ||+ |+.+
T Consensus       246 sp--dg~~l~~~  255 (396)
T 3c5m_A          246 IP--DGSAMAYV  255 (396)
T ss_dssp             CT--TSSCEEEE
T ss_pred             CC--CCCEEEEE
Confidence            88  886 4444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.96  E-value=0.00041  Score=71.97  Aligned_cols=178  Identities=11%  Similarity=0.031  Sum_probs=109.0

Q ss_pred             CcceEEEc-cCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCC-ceeeEEEecCCCeEEEEe
Q 048181           35 GGESIAFE-PVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICR-RTFGLALHYATRQLYIAD  112 (310)
Q Consensus        35 ~Pegia~d-~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~P~Gla~d~~~g~LyVad  112 (310)
                      ...+++|. |+|..+.+.. .+.|+.++..++.....                   ..... ....+++. .+..|+.+.
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~s-dg~~l~~~s  355 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-------------------PEPLRIRYVRRGGD-TKVAFIHGT  355 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-------------------SCCSCEEEEEECSS-SEEEEEEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc-------------------cCCCcceEEeeeEc-CCCeEEEEE
Confidence            47899999 9987443333 78888888764432110                   01122 44566774 233455544


Q ss_pred             CCCcEE-EEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEE-EEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          113 AYSGLL-VVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVY-FTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       113 ~~~gi~-~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~ly-vtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      ....++ .++.++++...+. .    ....+..++++|+ |+.. ++..                  ++.|+.+|..+++
T Consensus       356 ~~~~l~~~~d~~~~~~~~l~-~----~~~~~~~~~~SpD-G~~la~~~~------------------~~~v~~~d~~tg~  411 (1045)
T 1k32_A          356 REGDFLGIYDYRTGKAEKFE-E----NLGNVFAMGVDRN-GKFAVVAND------------------RFEIMTVDLETGK  411 (1045)
T ss_dssp             TTEEEEEEEETTTCCEEECC-C----CCCSEEEEEECTT-SSEEEEEET------------------TSEEEEEETTTCC
T ss_pred             CCCceEEEEECCCCCceEec-C----CccceeeeEECCC-CCEEEEECC------------------CCeEEEEECCCCc
Confidence            444588 8898877665543 1    1234678999995 6544 3322                  3579999998888


Q ss_pred             EEEeecCC-CCCceeEEccCCCEEEEEecCC---------CeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc-E
Q 048181          191 VTVLLRNL-TGPAGVAISVDSSFLLVSEFTG---------NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT-F  258 (310)
Q Consensus       191 ~~~~~~~l-~~pnGIa~~~dg~~Lyv~d~~~---------~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~-l  258 (310)
                      ...+.... .....++|+|||++|+++....         ..|+.+++++   +.... ......+..+++++  ||. |
T Consensus       412 ~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~---g~~~~l~~~~~~~~~~~~sp--dG~~l  486 (1045)
T 1k32_A          412 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG---RKIFAATTENSHDYAPAFDA--DSKNL  486 (1045)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT---TEEEECSCSSSBEEEEEECT--TSCEE
T ss_pred             eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC---CcEEEeeCCCcccCCceEcC--CCCEE
Confidence            77766333 3348999999999886665432         5788888764   22221 11122345678888  886 4


Q ss_pred             EEEE
Q 048181          259 WEAA  262 (310)
Q Consensus       259 ~va~  262 (310)
                      |.+.
T Consensus       487 ~~~s  490 (1045)
T 1k32_A          487 YYLS  490 (1045)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5444

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.96  E-value=0.0071  Score=52.19  Aligned_cols=202  Identities=11%  Similarity=-0.037  Sum_probs=114.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ....+++|.+++.++++...++.|..++.....  ..+.                 .+.........++++  ++.|+.+
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-----------------~~~~~~~~i~~~~~~--~~~l~~~  120 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY-----------------TLIGHQGNVCSLSFQ--DGVVISG  120 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C-----------------EECCCSSCEEEEEEE--TTEEEEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc-----------------chhhcccCEEEEEec--CCEEEEE
Confidence            356789999999988888888888877654211  1000                 011122334567774  4556555


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      .....|..+| .......+ ..    .-.....+++.+.+++.+++-.                 .+|.+..+|.. ...
T Consensus       121 ~~d~~i~~~d-~~~~~~~~-~~----~~~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~-~~~  176 (313)
T 3odt_A          121 SWDKTAKVWK-EGSLVYNL-QA----HNASVWDAKVVSFSENKFLTAS-----------------ADKTIKLWQND-KVI  176 (313)
T ss_dssp             ETTSEEEEEE-TTEEEEEE-EC----CSSCEEEEEEEETTTTEEEEEE-----------------TTSCEEEEETT-EEE
T ss_pred             eCCCCEEEEc-CCcEEEec-cc----CCCceeEEEEccCCCCEEEEEE-----------------CCCCEEEEecC-ceE
Confidence            5554577777 22222222 11    1123456676652244444432                 24677777742 222


Q ss_pred             EEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCC
Q 048181          192 TVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPA  269 (310)
Q Consensus       192 ~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~  269 (310)
                      ..+.. .-.....++++++++  +++-...+.|..+++...  ..... ..-.+....+++.+  +|.++.+....    
T Consensus       177 ~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~dg----  246 (313)
T 3odt_A          177 KTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG--DVLRTYEGHESFVYCIKLLP--NGDIVSCGEDR----  246 (313)
T ss_dssp             EEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECT--TSCEEEEETTS----
T ss_pred             EEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCch--hhhhhhhcCCceEEEEEEec--CCCEEEEecCC----
Confidence            22222 334568999999986  556667889999987532  11111 22234467789998  88766665543    


Q ss_pred             CCCceeeEEEC-CCCcEEEEEecCC
Q 048181          270 GTPVPIGQRIS-AFGAVLDTISFEA  293 (310)
Q Consensus       270 ~~~~~~v~~~~-~~G~~~~~~~~p~  293 (310)
                           .+..+| .+++.+..+..+.
T Consensus       247 -----~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          247 -----TVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             -----EEEEECTTTCCEEEEEECSS
T ss_pred             -----EEEEEECCCCceeEEEeccC
Confidence                 566666 3566666665554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.96  E-value=0.0094  Score=53.45  Aligned_cols=168  Identities=14%  Similarity=0.104  Sum_probs=98.3

Q ss_pred             CCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           34 FGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        34 ~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      ....+++|.+ +|+++++...+|.|..++......  .+...      ..+.- ..............+++.+.++++++
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK------AVCSI-GRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC------EEEEE-CTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc------ccccc-cccccccCCCcEEEEEEccCCCcEEE
Confidence            4567899999 999888988899999998774321  11000      00000 00000112334568888743555555


Q ss_pred             E-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCC--CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          111 A-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG--TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       111 a-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~--~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      + .....|..+|..+++....... .    .....+++.+.  ++.++++-.                 .+|.+..+|..
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~d~~  174 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFNF-E----ETVYSHHMSPVSTKHCLVAVGT-----------------RGPKVQLCDLK  174 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEEC-S----SCEEEEEECSSCSSCCEEEEEE-----------------SSSSEEEEESS
T ss_pred             EEeCCCeEEEeeCCCCccceeccC-C----CceeeeEeecCCCCCcEEEEEc-----------------CCCeEEEEeCC
Confidence            4 4444488888887765433221 1    12345566552  122443322                 24678888876


Q ss_pred             CCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          188 SSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       188 ~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      +++..... ..-.....++++|++++++++-...+.|..+++..
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR  218 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence            65433322 23334579999999987777878888999998864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.93  E-value=0.00053  Score=67.61  Aligned_cols=143  Identities=10%  Similarity=0.007  Sum_probs=85.2

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEe
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIAD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad  112 (310)
                      .+.+++|.+||.++++ ..++.|+.++..++. ..+. .          +.   .  ........+++. ++|+ |..+.
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~----------~~---~--~~~~~v~~~~~S-pDg~~l~~~~   79 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-E----------GK---K--IESLRAIRYEIS-PDREYALFSY   79 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-C----------TT---T--TTTTTCSEEEEC-TTSSEEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-c----------cc---c--ccccccceEEEC-CCCCEEEEEe
Confidence            4778899999996665 567889988876443 2221 0          00   0  000135678997 5666 44443


Q ss_pred             CC---------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          113 AY---------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       113 ~~---------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                      ..         ..++.+|.++++.+.+... .+ .-..+..++++|+ | .|.++..                   +.|+
T Consensus        80 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~-~~~~~~~~~~SPd-G~~la~~~~-------------------~~i~  137 (723)
T 1xfd_A           80 NVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-EV-SNAKLQYAGWGPK-GQQLIFIFE-------------------NNIY  137 (723)
T ss_dssp             SCCCCSSSCCCSEEEEEESSSCCCEECCCT-TC-CSCCCSBCCBCSS-TTCEEEEET-------------------TEEE
T ss_pred             cCccceeecceeeEEEEECCCCceEeccCC-cc-ccccccccEECCC-CCEEEEEEC-------------------CeEE
Confidence            21         3478889888776544321 11 1123567889995 6 4444321                   4688


Q ss_pred             EEcCCCCeEEEeecCC-------------------CCCceeEEccCCCEEEEEe
Q 048181          183 SYNPRSSQVTVLLRNL-------------------TGPAGVAISVDSSFLLVSE  217 (310)
Q Consensus       183 ~~d~~~g~~~~~~~~l-------------------~~pnGIa~~~dg~~Lyv~d  217 (310)
                      .+|..+++...+...-                   ....+++|||||++|+++.
T Consensus       138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence            8887766655443321                   1236899999999887765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.92  E-value=0.0015  Score=59.17  Aligned_cols=198  Identities=12%  Similarity=0.074  Sum_probs=113.0

Q ss_pred             CCCcceEEEccC-CCEEEEEeCCCeEEEEECCCce------EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           33 AFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGF------TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        33 ~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      -....+++|.++ ++++++...++.|..++.....      ..+..               ............+++.+..
T Consensus       113 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~~~  177 (416)
T 2pm9_A          113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP---------------GQSMSSVDEVISLAWNQSL  177 (416)
T ss_dssp             SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC---------------CCSCCSSCCCCEEEECSSC
T ss_pred             ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc---------------ccccCCCCCeeEEEeCCCC
Confidence            345678999998 7888888888888888876432      11100               0001122345689997433


Q ss_pred             CeEEEEeCCC-cEEEEeCCCCeEEEeeccCCC--ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          106 RQLYIADAYS-GLLVVGPNGRLATQLATGAEG--QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       106 g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g--~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                      +.++++.... .|..+|.++++..........  ..-...+.+++++++..++++-...              ...+.|.
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------~~~~~i~  243 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS--------------DNDPSIL  243 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC--------------SSSCCCC
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC--------------CCCceEE
Confidence            6666654443 488889887654332221100  0024568899999523555554321              0112677


Q ss_pred             EEcCCCC-eE-EEee-cCCCCCceeEEcc-CCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCC-
Q 048181          183 SYNPRSS-QV-TVLL-RNLTGPAGVAISV-DSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQ-  256 (310)
Q Consensus       183 ~~d~~~g-~~-~~~~-~~l~~pnGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG-  256 (310)
                      .+|..++ .. ..+. ..-.....++|+| +++ ++++-...+.|..+++...  ..... ....+....+++.+  +| 
T Consensus       244 ~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~s~--~~~  318 (416)
T 2pm9_A          244 IWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESA--EQLSQFPARGNWCFKTKFAP--EAP  318 (416)
T ss_dssp             EEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSC--CEEEEEECSSSCCCCEEECT--TCT
T ss_pred             EEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCC--ccceeecCCCCceEEEEECC--CCC
Confidence            7776553 22 2222 2233568999999 777 5556667888998887532  11111 22234466788888  88 


Q ss_pred             cEEEEEec
Q 048181          257 TFWEAAII  264 (310)
Q Consensus       257 ~l~va~~~  264 (310)
                      .++++...
T Consensus       319 ~~l~s~~~  326 (416)
T 2pm9_A          319 DLFACASF  326 (416)
T ss_dssp             TEEEECCS
T ss_pred             CEEEEEec
Confidence            66666544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.92  E-value=0.0097  Score=52.47  Aligned_cols=157  Identities=12%  Similarity=-0.061  Sum_probs=94.5

Q ss_pred             CCcceEEEccC----CCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           34 FGGESIAFEPV----GGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        34 ~~Pegia~d~~----G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ....+++|.++    |.++++...++.|..++..........                  .........+++.+.+++++
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------------------~~~~~~i~~~~~~~~~~~~l  131 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY------------------VGHGNAINELKFHPRDPNLL  131 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE------------------ESCCSCEEEEEECSSCTTEE
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee------------------cCCCCcEEEEEECCCCCCEE
Confidence            34678899988    668888888999999987643221110                  01223456889974266655


Q ss_pred             EE-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IA-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Va-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++ .....|..+|..+++.........+ .-.....++++++ |+.+++-..                 +|.|..+|..+
T Consensus       132 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~-----------------dg~i~i~d~~~  192 (366)
T 3k26_A          132 LSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSADYDLL-GEKIMSCGM-----------------DHSLKLWRINS  192 (366)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEEECTT-SSEEEEEET-----------------TSCEEEEESCS
T ss_pred             EEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEEECCC-CCEEEEecC-----------------CCCEEEEECCC
Confidence            54 4444588889887655433321111 2234678999995 766555322                 35666666554


Q ss_pred             CeEEE-----------------------------eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          189 SQVTV-----------------------------LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       189 g~~~~-----------------------------~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      ++...                             ....-..-+.++++  ++ ++++-...+.|..+++..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~  260 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGK  260 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESS
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCC
Confidence            32110                             00022345788888  55 566667788999998864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.90  E-value=0.003  Score=62.18  Aligned_cols=152  Identities=7%  Similarity=-0.017  Sum_probs=81.1

Q ss_pred             eeeEEEecCCCeEEEE--eCC---CcEEEEeCCCCeEEEeeccCCCcccc-CccceEEeCCCCe-EEEE-cCCCccCccc
Q 048181           96 TFGLALHYATRQLYIA--DAY---SGLLVVGPNGRLATQLATGAEGQAFH-FLDGLDVDQGTGV-VYFT-DASGVYDFRT  167 (310)
Q Consensus        96 P~Gla~d~~~g~LyVa--d~~---~gi~~id~~~~~~~~~~~~~~g~~~~-~pndvavd~~~G~-lyvt-d~~~~~~~~~  167 (310)
                      ...+++. ++|++++.  +..   ..|+.+|.++++...+.......... .+..++++|+ |+ |++. ......    
T Consensus       257 ~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~----  330 (723)
T 1xfd_A          257 ITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD-GRKFFFIRAIPQGG----  330 (723)
T ss_dssp             EEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT-SCSEEEEEEECCSS----
T ss_pred             eEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC-CCeEEEEEecccCC----
Confidence            3467886 68876643  222   13888899887765443221110111 1247899995 65 5553 211100    


Q ss_pred             eeEeeeecCCCceEEEEc-CCCCe---EEEeecC-CCCCceeEEccCCCEEEEEecC----CCeEEEEEecCCCCCcee-
Q 048181          168 IVKLNITNDSTGRLLSYN-PRSSQ---VTVLLRN-LTGPAGVAISVDSSFLLVSEFT----GNRTLKYWLRGPRANSFD-  237 (310)
Q Consensus       168 ~~~~~~~~~~~G~l~~~d-~~~g~---~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~----~~~I~~~~~~~~~~g~~~-  237 (310)
                             .....+|+.+| ..+++   .+.+..+ ....+-++|+|||+.||++...    ..+||+++.++.  .... 
T Consensus       331 -------~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~  401 (723)
T 1xfd_A          331 -------RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN--FNRQC  401 (723)
T ss_dssp             -------SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT--CCCBC
T ss_pred             -------CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC--CCcce
Confidence                   00123688888 45454   4443322 2222336899999999887654    345777665432  1111 


Q ss_pred             e-ecC--CCCCceeeeCCCCCCcEEEEEec
Q 048181          238 I-INF--QAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       238 ~-~~l--~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      + ..+  .+....+++++  ||+.++....
T Consensus       402 l~~~~~~~~~~~~~~~sp--dg~~l~~~~~  429 (723)
T 1xfd_A          402 LSCDLVENCTYFSASFSH--SMDFFLLKCE  429 (723)
T ss_dssp             SSTTSSSSCCCCEEEECT--TSSEEEEECC
T ss_pred             ecccccCCCCeEEEEECC--CCCEEEEEcc
Confidence            2 111  23356788999  9976655433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.90  E-value=0.00099  Score=60.36  Aligned_cols=126  Identities=9%  Similarity=-0.008  Sum_probs=75.4

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          105 TRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       105 ~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      ++.+|++....+++.+|+++|+...- ...     .....++++  ++++|+++.                  +|.|+.+
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~-~~~-----~~~~~~~~~--~~~l~~~~~------------------~g~l~~~  292 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWK-REL-----GSVNDFIVD--GNRIYLVDQ------------------NDRVMAL  292 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEE-ECC-----CCEEEEEEE--TTEEEEEET------------------TCCEEEE
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEee-ccC-----CCCCCceEE--CCEEEEEcC------------------CCeEEEE
Confidence            78999987666799999988765422 111     123456666  589999864                  3679999


Q ss_pred             cCCCCeEEEeecCC--CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC-C-CCceeeeCCCCCCcEE
Q 048181          185 NPRSSQVTVLLRNL--TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ-A-KPHNIKRNPGLLQTFW  259 (310)
Q Consensus       185 d~~~g~~~~~~~~l--~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~-g-~Pdgl~~d~~~dG~l~  259 (310)
                      |+.+|+..-....+  ......++.  ++.||+... .+.|+.++...   |+..- ..+. . ......+ .  +|.||
T Consensus       293 d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~-~g~l~~~d~~t---G~~~~~~~~~~~~~~~~~~~-~--~~~l~  363 (376)
T 3q7m_A          293 TIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDS-EGYLHWINVED---GRFVAQQKVDSSGFQTEPVA-A--DGKLL  363 (376)
T ss_dssp             ETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECT-TSEEEEEETTT---CCEEEEEECCTTCBCSCCEE-E--TTEEE
T ss_pred             ECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeC-CCeEEEEECCC---CcEEEEEecCCCcceeCCEE-E--CCEEE
Confidence            99888764333322  122344443  346887754 67888888643   33221 2221 1 1112233 4  68899


Q ss_pred             EEEecC
Q 048181          260 EAAIIT  265 (310)
Q Consensus       260 va~~~~  265 (310)
                      ++...+
T Consensus       364 v~~~~G  369 (376)
T 3q7m_A          364 IQAKDG  369 (376)
T ss_dssp             EEBTTS
T ss_pred             EEeCCC
Confidence            987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.90  E-value=0.007  Score=63.44  Aligned_cols=190  Identities=11%  Similarity=0.043  Sum_probs=112.3

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeE
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQL  108 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~L  108 (310)
                      .+.-....+++|.++|.++++...++.|..++...+.......                  ........+++.+. ++.+
T Consensus       654 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~  715 (1249)
T 3sfz_A          654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD------------------EHSEQVNCCHFTNKSNHLL  715 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------------CCSSCEEEEEECSSSSCCE
T ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc------------------CCCCcEEEEEEecCCCceE
Confidence            3333456789999999988888889999999977443221110                  11233456788532 3344


Q ss_pred             EEEeC-CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          109 YIADA-YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       109 yVad~-~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      +++.. ...|..+|..+++......   + +-...+.++++++ |+.+++-+.                 +|.|..+|..
T Consensus       716 l~sg~~d~~v~vwd~~~~~~~~~~~---~-h~~~v~~~~~sp~-~~~l~s~s~-----------------dg~v~vwd~~  773 (1249)
T 3sfz_A          716 LATGSNDFFLKLWDLNQKECRNTMF---G-HTNSVNHCRFSPD-DELLASCSA-----------------DGTLRLWDVR  773 (1249)
T ss_dssp             EEEEETTSCEEEEETTSSSEEEEEC---C-CSSCEEEEEECSS-TTEEEEEES-----------------SSEEEEEEGG
T ss_pred             EEEEeCCCeEEEEECCCcchhheec---C-CCCCEEEEEEecC-CCEEEEEEC-----------------CCeEEEEeCC
Confidence            44433 3348888887765432221   1 2234678999994 776666432                 3566666654


Q ss_pred             CCeEEEeec--------------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeC
Q 048181          188 SSQVTVLLR--------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRN  251 (310)
Q Consensus       188 ~g~~~~~~~--------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d  251 (310)
                      +++......              .-.....++|+|||+.++++.  .+.+..+++...  .....  ..-.+....+++.
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~--~~~~~~~~~~~~~v~~~~~s  849 (1249)
T 3sfz_A          774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTS--GLLAEIHTGHHSTIQYCDFS  849 (1249)
T ss_dssp             GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTC--CEEEEEECSSSSCCCEEEEC
T ss_pred             CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCC--CceeEEcCCCCCceEEEEEc
Confidence            443222111              111457899999999777664  578888887542  11111  1223446778888


Q ss_pred             CCCCCcEEEEEecC
Q 048181          252 PGLLQTFWEAAIIT  265 (310)
Q Consensus       252 ~~~dG~l~va~~~~  265 (310)
                      +  +|.+.++....
T Consensus       850 p--~~~~l~~~~~d  861 (1249)
T 3sfz_A          850 P--YDHLAVIALSQ  861 (1249)
T ss_dssp             S--STTEEEEECSS
T ss_pred             C--CCCEEEEEeCC
Confidence            8  88776665443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.87  E-value=0.0035  Score=55.31  Aligned_cols=187  Identities=9%  Similarity=0.059  Sum_probs=104.7

Q ss_pred             CcceEEEccC---CCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEE------EecC
Q 048181           35 GGESIAFEPV---GGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA------LHYA  104 (310)
Q Consensus        35 ~Pegia~d~~---G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla------~d~~  104 (310)
                      ...+++|.++   |.++++...++.|..++..... ....                  +.........+.      +. +
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~s-~  127 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS------------------VKGHKEIINAIDGIGGLGIG-E  127 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE------------------ECCCSSCEEEEEEESGGGCC--
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE------------------EEecccceEEEeeccccccC-C
Confidence            4567888887   6888888888999888876332 1100                  001112234453      33 3


Q ss_pred             CCeEEE-EeCCCcEEEEeCCCCe--EEEeeccCCCccccCccceE----EeCCCCeEEEEcCCCccCccceeEeeeecCC
Q 048181          105 TRQLYI-ADAYSGLLVVGPNGRL--ATQLATGAEGQAFHFLDGLD----VDQGTGVVYFTDASGVYDFRTIVKLNITNDS  177 (310)
Q Consensus       105 ~g~LyV-ad~~~gi~~id~~~~~--~~~~~~~~~g~~~~~pndva----vd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~  177 (310)
                      ++++++ +.....|..+|..+++  ...+ ....+..-.....++    +++ +++++++-.                 .
T Consensus       128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~-----------------~  188 (357)
T 3i2n_A          128 GAPEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQ-EERVVCAGY-----------------D  188 (357)
T ss_dssp             CCCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC--CCCEEEEEE-----------------T
T ss_pred             CccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCC-CCCEEEEEc-----------------c
Confidence            554444 4444458888877653  2222 221221122344555    556 366655532                 2


Q ss_pred             CceEEEEcCCCCeEEEeecCCCCCceeEEcc---CCCEEEEEecCCCeEEEEEecCCCC-Cceee---ecCCCCCceeee
Q 048181          178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISV---DSSFLLVSEFTGNRTLKYWLRGPRA-NSFDI---INFQAKPHNIKR  250 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~---dg~~Lyv~d~~~~~I~~~~~~~~~~-g~~~~---~~l~g~Pdgl~~  250 (310)
                      +|.|..+|..+++.......-...+.++++|   +++.|++ -...+.|..|++..... .....   .........+++
T Consensus       189 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  267 (357)
T 3i2n_A          189 NGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA-TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH  267 (357)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE-EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred             CCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE-ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence            4788888988777655444445678999999   8886555 46778888888764211 11111   122334566778


Q ss_pred             CCCCCCc-EEEEE
Q 048181          251 NPGLLQT-FWEAA  262 (310)
Q Consensus       251 d~~~dG~-l~va~  262 (310)
                      .+  +|. +.++.
T Consensus       268 ~~--~~~~~l~~~  278 (357)
T 3i2n_A          268 LP--QNRELFLTA  278 (357)
T ss_dssp             ET--TEEEEEEEE
T ss_pred             CC--CCCcEEEEE
Confidence            77  776 44443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.87  E-value=0.002  Score=58.13  Aligned_cols=165  Identities=10%  Similarity=0.038  Sum_probs=101.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ....+++|.++| ++++...++.|..++..............            .-.........++++ ++++++++..
T Consensus       187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~h~~~~~~i~~i~~~-~~~~~l~~~~  252 (397)
T 1sq9_A          187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH------------SMINNSNSIRSVKFS-PQGSLLAIAH  252 (397)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---------------CCCCCEEEEEEC-SSTTEEEEEE
T ss_pred             CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccc------------cccccCCccceEEEC-CCCCEEEEEe
Confidence            357789999999 88888889999999987543221110000            000003346688997 5666555433


Q ss_pred             C----CcEEEEeCCCCeEEEeeccCC--C-------ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181          114 Y----SGLLVVGPNGRLATQLATGAE--G-------QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       114 ~----~gi~~id~~~~~~~~~~~~~~--g-------~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      .    ..|..+|..+++.........  .       ..-.....++++++ |+++++-.                 .+|.
T Consensus       253 ~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-----------------~dg~  314 (397)
T 1sq9_A          253 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCSAG-----------------WDGK  314 (397)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS-SSEEEEEE-----------------TTSE
T ss_pred             cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC-CCEEEEEe-----------------CCCe
Confidence            3    348888887655322221100  0       01234678999994 77666543                 2477


Q ss_pred             EEEEcCCCCeEEEeec------C----------------CCCCceeEEccCCC---------EEEEEecCCCeEEEEEec
Q 048181          181 LLSYNPRSSQVTVLLR------N----------------LTGPAGVAISVDSS---------FLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       181 l~~~d~~~g~~~~~~~------~----------------l~~pnGIa~~~dg~---------~Lyv~d~~~~~I~~~~~~  229 (310)
                      |..+|..+++......      .                -...+.++|+|+|+         .++++-...+.|..+++.
T Consensus       315 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          315 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            8888877665544333      2                34568999999983         366676778889888876


Q ss_pred             C
Q 048181          230 G  230 (310)
Q Consensus       230 ~  230 (310)
                      +
T Consensus       395 ~  395 (397)
T 1sq9_A          395 G  395 (397)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.85  E-value=0.00062  Score=65.61  Aligned_cols=189  Identities=15%  Similarity=0.116  Sum_probs=106.5

Q ss_pred             CcceEEEccCCC-EEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-E
Q 048181           35 GGESIAFEPVGG-AFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-A  111 (310)
Q Consensus        35 ~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-a  111 (310)
                      +...++|.++|+ ++|+....+.+..++.+++. +.+..                    . .. ..++++ ++|+.++ +
T Consensus       111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--------------------~-~~-~~~~~s-pDG~~la~~  167 (582)
T 3o4h_A          111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--------------------L-PG-FGFVSD-IRGDLIAGL  167 (582)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--------------------E-SS-CEEEEE-EETTEEEEE
T ss_pred             CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--------------------C-CC-ceEEEC-CCCCEEEEE
Confidence            445667777773 56666555555566655443 22210                    0 01 567887 5666544 3


Q ss_pred             eCC----CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          112 DAY----SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       112 d~~----~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      ...    ..|+.+|.++++.+.+... .    ...+.++++|+ |+.+++...               ....+|+++|.+
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~~l~~~-~----~~~~~~~~SpD-G~~l~~~~~---------------~~~~~i~~~d~~  226 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLRVFDSG-E----GSFSSASISPG-MKVTAGLET---------------AREARLVTVDPR  226 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCEEECCS-S----CEEEEEEECTT-SCEEEEEEC---------------SSCEEEEEECTT
T ss_pred             EEcCCCCeEEEEEcCCCCCceEeecC-C----CccccceECCC-CCEEEEccC---------------CCeeEEEEEcCC
Confidence            221    2389999988877655321 1    22478999995 765443211               111379999998


Q ss_pred             CCeEEEeecCC-CCCceeE--------EccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcE
Q 048181          188 SSQVTVLLRNL-TGPAGVA--------ISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTF  258 (310)
Q Consensus       188 ~g~~~~~~~~l-~~pnGIa--------~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l  258 (310)
                      +++.+ +.... ....+++        |+||| .+|++-...+++..|.+ |.    .. ....+....++++   +|.+
T Consensus       227 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~----~~-~~~~~~v~~~~~s---dg~~  295 (582)
T 3o4h_A          227 DGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-GE----RV-EAPQGNHGRVVLW---RGKL  295 (582)
T ss_dssp             TCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-TE----EE-CCCSSEEEEEEEE---TTEE
T ss_pred             CCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-CC----ee-ccCCCceEEEEec---CCEE
Confidence            88877 44332 2345566        99999 58887777788777776 32    11 1111223456665   4666


Q ss_pred             EEEEecCCCCCCCCceeeEEECCCC
Q 048181          259 WEAAIITRQPAGTPVPIGQRISAFG  283 (310)
Q Consensus       259 ~va~~~~~~~~~~~~~~v~~~~~~G  283 (310)
                      ++.......+     +.+..++.++
T Consensus       296 l~~~s~~~~p-----~~l~~~d~~~  315 (582)
T 3o4h_A          296 VTSHTSLSTP-----PRIVSLPSGE  315 (582)
T ss_dssp             EEEEEETTEE-----EEEEEETTCC
T ss_pred             EEEEcCCCCC-----CeEEEEcCCC
Confidence            5554433211     3455566555

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.81  E-value=0.01  Score=53.24  Aligned_cols=159  Identities=8%  Similarity=-0.029  Sum_probs=85.8

Q ss_pred             eeEEEecCCCe-EEEE-eCC-----CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccce
Q 048181           97 FGLALHYATRQ-LYIA-DAY-----SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTI  168 (310)
Q Consensus        97 ~Gla~d~~~g~-LyVa-d~~-----~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~  168 (310)
                      ..+++.+.+|+ |+++ +..     ..|+.++.++++.+.+...   .+...+..++++|+ |+ |+++....       
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spd-g~~l~~~~~~~-------  259 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH---AEGESCTHEFWIPD-GSAMAYVSYFK-------  259 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC---CTTEEEEEEEECTT-SSCEEEEEEET-------
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc---CCCccccceEECCC-CCEEEEEecCC-------
Confidence            35566531443 5444 322     2488888877665544321   11123566789995 65 55543211       


Q ss_pred             eEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEcc-CCCEEEEEec---------------CCCeEEEEEecCCC
Q 048181          169 VKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISV-DSSFLLVSEF---------------TGNRTLKYWLRGPR  232 (310)
Q Consensus       169 ~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~-dg~~Lyv~d~---------------~~~~I~~~~~~~~~  232 (310)
                            ....+.|+.+|..+++.+.+.. +..-+ ++++| ||+.|+++..               ....|+++++++..
T Consensus       260 ------~~~~~~l~~~d~~~g~~~~l~~-~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          260 ------GQTDRVIYKANPETLENEEVMV-MPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             ------TTCCEEEEEECTTTCCEEEEEE-CCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             ------CCccceEEEEECCCCCeEEeee-CCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence                  1122459999988787665442 22223 89999 9996555432               34689999886432


Q ss_pred             CCceeeecCCC-----------CCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECCCCc
Q 048181          233 ANSFDIINFQA-----------KPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAFGA  284 (310)
Q Consensus       233 ~g~~~~~~l~g-----------~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~G~  284 (310)
                      .  ..+.....           ....+++++  ||. |+.+.....      ...+.+++.++.
T Consensus       332 ~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~s~~~~------~~~l~~~~~~~~  385 (396)
T 3c5m_A          332 A--QKLCKHSTSWDVLDGDRQITHPHPSFTP--NDDGVLFTSDFEG------VPAIYIADVPES  385 (396)
T ss_dssp             C--CEEEECCCCCCCBTTBSSTTCCCCEECT--TSSEEEEEECTTS------SCEEEEEECCTT
T ss_pred             e--EEccCCCCccccccccccCCCCCceEcc--CCCeEEEEecCCC------CceEEEEEEccc
Confidence            1  12211111           134567888  885 444433222      146777775544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.0094  Score=61.01  Aligned_cols=198  Identities=10%  Similarity=0.018  Sum_probs=120.4

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEeC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad~  113 (310)
                      ...+++|+|+|.++.++..++.|+-++..+.......                   .....-..+++. + |+ |+.+..
T Consensus        19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-------------------~~~~~V~~l~fs-p-g~~L~S~s~   77 (902)
T 2oaj_A           19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-------------------EDRSAIKEMRFV-K-GIYLVVINA   77 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-------------------SSCCCEEEEEEE-T-TTEEEEEET
T ss_pred             CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-------------------CCCCCEEEEEEc-C-CCEEEEEEC
Confidence            5789999999999999999999999987654332210                   112234688997 4 55 554555


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ...|...|.++++...... ..    ...+.++++|+ |+..++-.                 .+|.|..+|..+++...
T Consensus        78 D~~v~lWd~~~~~~~~~~~-~~----~~V~~v~~sp~-g~~l~sgs-----------------~dg~V~lwd~~~~~~~~  134 (902)
T 2oaj_A           78 KDTVYVLSLYSQKVLTTVF-VP----GKITSIDTDAS-LDWMLIGL-----------------QNGSMIVYDIDRDQLSS  134 (902)
T ss_dssp             TCEEEEEETTTCSEEEEEE-CS----SCEEEEECCTT-CSEEEEEE-----------------TTSCEEEEETTTTEEEE
T ss_pred             cCeEEEEECCCCcEEEEEc-CC----CCEEEEEECCC-CCEEEEEc-----------------CCCcEEEEECCCCcccc
Confidence            5558888887765322111 11    23578899995 65554432                 24677778877665431


Q ss_pred             e------------ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecC-----------------CC
Q 048181          194 L------------LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INF-----------------QA  243 (310)
Q Consensus       194 ~------------~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l-----------------~g  243 (310)
                      .            .......+.|+|+|++..++++-...+.| .+++..... ...+ ...                 ..
T Consensus       135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccCC
Confidence            1            01123457999999754455566677888 787753210 0011 110                 02


Q ss_pred             CCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEE
Q 048181          244 KPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDT  288 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~  288 (310)
                      ....+++.+  +|.+.++...-+        .+..+|. +|+.+..
T Consensus       213 ~V~~v~fsp--dg~~lasgs~Dg--------~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          213 KVIQSLYHP--NSLHIITIHEDN--------SLVFWDANSGHMIMA  248 (902)
T ss_dssp             CEEEEEECT--TSSEEEEEETTC--------CEEEEETTTCCEEEE
T ss_pred             CeEEEEEcC--CCCEEEEEECCC--------eEEEEECCCCcEEEE
Confidence            245788999  998777766542        5777775 5776543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.78  E-value=0.0093  Score=55.08  Aligned_cols=157  Identities=11%  Similarity=0.092  Sum_probs=91.1

Q ss_pred             CCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ..-.+++|.| +++++++...++.|..++..++........                .........++++ .+++++++-
T Consensus       165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~-~~~~~l~~g  227 (435)
T 4e54_B          165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS----------------DTINIWFCSLDVS-ASSRMVVTG  227 (435)
T ss_dssp             CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC----------------SSCSCCCCCEEEE-TTTTEEEEE
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc----------------CCCCccEEEEEEC-CCCCEEEEE
Confidence            3456899997 688888888899999998876543221100                0111223468887 567666654


Q ss_pred             CCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      ... .|..+|.++..+..+    .+ .-...+.++++|++..++++-..                 +|.|..+|..+.+.
T Consensus       228 ~~dg~i~~wd~~~~~~~~~----~~-h~~~v~~v~~~p~~~~~~~s~s~-----------------d~~v~iwd~~~~~~  285 (435)
T 4e54_B          228 DNVGNVILLNMDGKELWNL----RM-HKKKVTHVALNPCCDWFLATASV-----------------DQTVKIWDLRQVRG  285 (435)
T ss_dssp             CSSSBEEEEESSSCBCCCS----BC-CSSCEEEEEECTTCSSEEEEEET-----------------TSBCCEEETTTCCS
T ss_pred             eCCCcEeeeccCcceeEEE----ec-ccceEEeeeecCCCceEEEEecC-----------------cceeeEEecccccc
Confidence            443 478888776443222    11 12345788999853345554322                 34555555443221


Q ss_pred             E-Eee---cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          192 T-VLL---RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       192 ~-~~~---~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      . .+.   ..-..-+.++|+|||++| ++-...+.|..+++..
T Consensus       286 ~~~~~~~~~h~~~v~~~~~spdg~~l-~s~~~D~~i~iwd~~~  327 (435)
T 4e54_B          286 KASFLYSLPHRHPVNAACFSPDGARL-LTTDQKSEIRVYSASQ  327 (435)
T ss_dssp             SSCCSBCCBCSSCEEECCBCTTSSEE-EEEESSSCEEEEESSS
T ss_pred             cceEEEeeeccccccceeECCCCCee-EEEcCCCEEEEEECCC
Confidence            1 111   111234788999999855 5556778888888753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.78  E-value=0.018  Score=51.22  Aligned_cols=186  Identities=11%  Similarity=0.051  Sum_probs=105.7

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-Ee
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-AD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad  112 (310)
                      ....++++.+++.++++...++.|.-++...+......                  .........+++. ++++.++ +.
T Consensus        77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~------------------~~h~~~v~~v~~s-p~~~~l~s~~  137 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF------------------VGHQSEVYSVAFS-PDNRQILSAG  137 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE------------------ECCCSCEEEEEEC-SSTTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE------------------cCCCCcEEEEEEC-CCCCEEEEEc
Confidence            44678999999998888889999999987643221110                  0112345678997 5665444 44


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC----------eEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG----------VVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G----------~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                      ....|..+|..+........ ..+ .-...+.++++|. +          .++++                 ...+|.|.
T Consensus       138 ~d~~i~~wd~~~~~~~~~~~-~~~-~~~~v~~~~~~~~-~~~~~~~~~~~~~l~s-----------------~~~d~~i~  197 (343)
T 2xzm_R          138 AEREIKLWNILGECKFSSAE-KEN-HSDWVSCVRYSPI-MKSANKVQPFAPYFAS-----------------VGWDGRLK  197 (343)
T ss_dssp             TTSCEEEEESSSCEEEECCT-TTS-CSSCEEEEEECCC-CCSCSCCCSSCCEEEE-----------------EETTSEEE
T ss_pred             CCCEEEEEeccCCceeeeec-ccC-CCceeeeeeeccc-cccccccCCCCCEEEE-----------------EcCCCEEE
Confidence            44457777876543322211 111 1223456777763 3          22222                 23457788


Q ss_pred             EEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEE
Q 048181          183 SYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       183 ~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      .+|........+...-...+.++|+|||++ +++-...+.|..+++......... .........+++++  +|.+..+.
T Consensus       198 iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~~v~~v~~sp--~~~~la~~  273 (343)
T 2xzm_R          198 VWNTNFQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTYPQRE-FDAGSTINQIAFNP--KLQWVAVG  273 (343)
T ss_dssp             EEETTTEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEEEESSCCSSCSEE-EECSSCEEEEEECS--SSCEEEEE
T ss_pred             EEcCCCceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEEEECCCCccccee-ecCCCcEEEEEECC--CCCEEEEE
Confidence            888542222223333345689999999984 556667888988887422111111 11112356678887  77655443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.78  E-value=0.00032  Score=68.30  Aligned_cols=122  Identities=14%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             CCCCceeeEEEecCCCeEEEEeCC----------------------CcEEEEeCCCCe-------EEEee--cc------
Q 048181           91 PICRRTFGLALHYATRQLYIADAY----------------------SGLLVVGPNGRL-------ATQLA--TG------  133 (310)
Q Consensus        91 ~~~~~P~Gla~d~~~g~LyVad~~----------------------~gi~~id~~~~~-------~~~~~--~~------  133 (310)
                      ..+.+|-|+.+++.+|.+|++...                      ..|+++.++++.       ...++  ..      
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            346688999998779999998531                      138888765331       11121  10      


Q ss_pred             ---------CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCC--CCCc
Q 048181          134 ---------AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNL--TGPA  202 (310)
Q Consensus       134 ---------~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l--~~pn  202 (310)
                               .....|..|..|++|+. |+|||...+.......     +....+..++.+++.++++..++..-  .-..
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~-----~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~T  534 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGD-----FAGMGNNQMLCADPATGEIRRFMVGPIGCEVT  534 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGG-----GTTTCSCEEEEECTTTCCEEEEEECCTTCEEE
T ss_pred             cccccccccCCCCCccCCcceEECCC-CCEEEEecCCCccccc-----ccccccceEEEEeCCCCeEEEEEeCCCCccCc
Confidence                     01225788999999995 9999865432111110     01123456888898888888776532  2346


Q ss_pred             eeEEccCCCEEEEEec
Q 048181          203 GVAISVDSSFLLVSEF  218 (310)
Q Consensus       203 GIa~~~dg~~Lyv~d~  218 (310)
                      |++|+||+++|||+-.
T Consensus       535 G~~fspDg~tlfvniQ  550 (592)
T 3zwu_A          535 GISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEEECTTSSEEEEEEE
T ss_pred             CeeECCCCCEEEEEEE
Confidence            9999999999999743

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.78  E-value=0.006  Score=63.21  Aligned_cols=150  Identities=11%  Similarity=0.110  Sum_probs=91.0

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEE-EEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEe
Q 048181           35 GGESIAFEPVGGAFYTGVADGRIL-KYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIAD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~-r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad  112 (310)
                      ...+++|. +|..++....+.+|+ .++.+++....                   +......+..++++ ++|+ |+++.
T Consensus       339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-------------------l~~~~~~~~~~~~S-pDG~~la~~~  397 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-------------------FEENLGNVFAMGVD-RNGKFAVVAN  397 (1045)
T ss_dssp             EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-------------------CCCCCCSEEEEEEC-TTSSEEEEEE
T ss_pred             eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-------------------ecCCccceeeeEEC-CCCCEEEEEC
Confidence            35567888 875444433367788 77776543211                   01122456788997 5665 55555


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEE-EEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVY-FTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~ly-vtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      ....|+.+|.++++...+.....    .....++++|+ |+.. ++.....+..        .....+.|+.+|..+++.
T Consensus       398 ~~~~v~~~d~~tg~~~~~~~~~~----~~v~~~~~SpD-G~~la~~~~~~~~~~--------~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          398 DRFEIMTVDLETGKPTVIERSRE----AMITDFTISDN-SRFIAYGFPLKHGET--------DGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSS----SCCCCEEECTT-SCEEEEEEEECSSTT--------CSCCEEEEEEEETTTTEE
T ss_pred             CCCeEEEEECCCCceEEeccCCC----CCccceEECCC-CCeEEEEecCccccc--------cCCCCCeEEEEECCCCcE
Confidence            55569999998887765542211    23468999995 7643 3322100000        001235799999888876


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEec
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEF  218 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~  218 (310)
                      ..+.........++|+|||++||+...
T Consensus       465 ~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          465 FAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             EECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             EEeeCCCcccCCceEcCCCCEEEEEec
Confidence            666655556778999999998887654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.77  E-value=0.005  Score=58.77  Aligned_cols=142  Identities=8%  Similarity=0.021  Sum_probs=88.3

Q ss_pred             CceeeEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           94 RRTFGLALHYATRQLYIADA-YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        94 ~~P~Gla~d~~~g~LyVad~-~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      ..+..+++.  ...|+++.. ...|..++..+++...  ....+ .-.....++++++ |+++++-.             
T Consensus       447 ~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~-~~~~v~~~~~s~~-g~~l~~~~-------------  507 (615)
T 1pgu_A          447 SPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTP-LRAKPSYISISPS-ETYIAAGD-------------  507 (615)
T ss_dssp             SCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE--ECSSC-CSSCEEEEEECTT-SSEEEEEE-------------
T ss_pred             CCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc--cccCC-ccCceEEEEECCC-CCEEEEcC-------------
Confidence            356678884  455555555 4458888887655432  12222 2245678999994 77766543             


Q ss_pred             eecCCCceEEEEcCCCCeEEEeec--CCCCCceeEEcc----------CCCEEEEEecCCCeEEEEEecCCCCCceee-e
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLLR--NLTGPAGVAISV----------DSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I  239 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~~--~l~~pnGIa~~~----------dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~  239 (310)
                          .+|.|..+|..+++......  .-...+.++|+|          ++++ +++-...+.|+.+++.... ..... .
T Consensus       508 ----~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~-~~~~~~~  581 (615)
T 1pgu_A          508 ----VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL-VATGSLDTNIFIYSVKRPM-KIIKALN  581 (615)
T ss_dssp             ----TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE-EEEEETTSCEEEEESSCTT-CCEEETT
T ss_pred             ----CCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCE-EEEEcCCCcEEEEECCCCc-eechhhh
Confidence                24778888887776544333  234568999999          9984 5555677889999886421 11111 2


Q ss_pred             cCCCCCceeeeCCCCCCcEEEEEe
Q 048181          240 NFQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       240 ~l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                      .-......+++.+  +|. .++..
T Consensus       582 ~h~~~v~~l~~s~--~~~-l~s~~  602 (615)
T 1pgu_A          582 AHKDGVNNLLWET--PST-LVSSG  602 (615)
T ss_dssp             SSTTCEEEEEEEE--TTE-EEEEE
T ss_pred             cCccceEEEEEcC--CCC-eEEec
Confidence            2234467788998  888 44443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.77  E-value=0.013  Score=56.77  Aligned_cols=80  Identities=9%  Similarity=-0.106  Sum_probs=50.3

Q ss_pred             ceeEEccCCCEEEEEec------------------------------------CCCeEEEEEecCCCCCceee-ecCCCC
Q 048181          202 AGVAISVDSSFLLVSEF------------------------------------TGNRTLKYWLRGPRANSFDI-INFQAK  244 (310)
Q Consensus       202 nGIa~~~dg~~Lyv~d~------------------------------------~~~~I~~~~~~~~~~g~~~~-~~l~g~  244 (310)
                      .+++++|+++.+|+...                                    ..+.|+.+++..   |+..- ......
T Consensus       389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t---G~~~W~~~~~~~  465 (571)
T 2ad6_A          389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT---GKAKWTKWEKFA  465 (571)
T ss_dssp             CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT---CCEEEEEEESSC
T ss_pred             CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC---CCEEEEecCCCC
Confidence            46899999998998642                                    235677776542   32211 111111


Q ss_pred             Cceee-eCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCCc
Q 048181          245 PHNIK-RNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQY  295 (310)
Q Consensus       245 Pdgl~-~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~~  295 (310)
                      +.+.. ...  +|.+|++....         .+..+|. +|+++-.+..+.+.
T Consensus       466 ~~~~~~~t~--gg~v~~g~~dg---------~l~a~D~~tG~~lw~~~~~~~~  507 (571)
T 2ad6_A          466 AWGGTLYTK--GGLVWYATLDG---------YLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             CCSBCEEET--TTEEEEECTTS---------EEEEEETTTCCEEEEEECSSCC
T ss_pred             ccceeEEEC--CCEEEEEcCCC---------eEEEEECCCCCEEEEEeCCCCc
Confidence            22322 344  67889876543         7899995 69999999998654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.013  Score=51.92  Aligned_cols=193  Identities=10%  Similarity=0.011  Sum_probs=107.0

Q ss_pred             CCCCCCcceEEEccC--CCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC-
Q 048181           30 PPKAFGGESIAFEPV--GGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT-  105 (310)
Q Consensus        30 ~~~~~~Pegia~d~~--G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~-  105 (310)
                      .+.-....+++|.++  ++++++...++.|..++...+. .....                 ..........+++. ++ 
T Consensus        52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----------------~~~~~~~v~~~~~~-~~~  113 (379)
T 3jrp_A           52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV-----------------HAVHSASVNSVQWA-PHE  113 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE-----------------ECCCSSCEEEEEEC-CGG
T ss_pred             cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee-----------------ecCCCcceEEEEeC-CCC
Confidence            333345678899866  8888888889988888766432 11111                 01122345688886 44 


Q ss_pred             -CeEEE-EeCCCcEEEEeCCCCeE--EEeeccCCCccccCccceEEeCC------------CCeEEEEcCCCccCcccee
Q 048181          106 -RQLYI-ADAYSGLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQG------------TGVVYFTDASGVYDFRTIV  169 (310)
Q Consensus       106 -g~LyV-ad~~~gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~------------~G~lyvtd~~~~~~~~~~~  169 (310)
                       +++++ +.....|..+|..++..  ......    .-...+.++++|.            ++.++++-.          
T Consensus       114 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------  179 (379)
T 3jrp_A          114 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDA----HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG----------  179 (379)
T ss_dssp             GCSEEEEEETTSEEEEEECCTTSCCCEEEEEC----CTTCEEEEEECCCC----------CTTCEEEEEE----------
T ss_pred             CCCEEEEecCCCcEEEEecCCCCceeeEEecC----CCCceEEEEEcCccccccccccCCCCCCEEEEEe----------
Confidence             55444 44444577777765421  111111    1123467777772            244444432          


Q ss_pred             EeeeecCCCceEEEEcCCCCe----EE-EeecCCCCCceeEEccC---CCEEEEEecCCCeEEEEEecCCCCC-ceee--
Q 048181          170 KLNITNDSTGRLLSYNPRSSQ----VT-VLLRNLTGPAGVAISVD---SSFLLVSEFTGNRTLKYWLRGPRAN-SFDI--  238 (310)
Q Consensus       170 ~~~~~~~~~G~l~~~d~~~g~----~~-~~~~~l~~pnGIa~~~d---g~~Lyv~d~~~~~I~~~~~~~~~~g-~~~~--  238 (310)
                             .+|.|..+|..++.    .. .+...-...+.++|+|+   ++ ++++-...+.|..+++...... ...+  
T Consensus       180 -------~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  251 (379)
T 3jrp_A          180 -------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLK  251 (379)
T ss_dssp             -------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCCEEEESS
T ss_pred             -------CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccceeeeec
Confidence                   23566666654332    11 11122334579999999   65 5666667888888888643211 1112  


Q ss_pred             -ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          239 -INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       239 -~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                       .........+++++  +|.+.++...
T Consensus       252 ~~~~~~~v~~~~~s~--~g~~l~~~~~  276 (379)
T 3jrp_A          252 EEKFPDVLWRASWSL--SGNVLALSGG  276 (379)
T ss_dssp             SSCCSSCEEEEEECS--SSCCEEEEES
T ss_pred             cccCCCcEEEEEEcC--CCCEEEEecC
Confidence             11234456788998  9976555443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.75  E-value=0.019  Score=50.64  Aligned_cols=186  Identities=12%  Similarity=0.096  Sum_probs=110.8

Q ss_pred             CCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      +.-....++++.++|.++++...++.|..++...+.......                  ........++++ +++.+++
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~------------------~h~~~v~~~~~~-~~~~~l~  123 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV------------------GHKSDVMSVDID-KKASMII  123 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------------------CCSSCEEEEEEC-TTSCEEE
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc------------------cCCCcEEEEEEc-CCCCEEE
Confidence            333456678999999988899899999999987543211110                  112345678886 5666655


Q ss_pred             E-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCC-----CCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          111 A-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG-----TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       111 a-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~-----~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      + .....|..+|.++.....+..     .....+.+++.|.     ++..+++-                 ..+|.+..+
T Consensus       124 s~s~D~~i~vwd~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~l~s~-----------------~~d~~i~~w  181 (319)
T 3frx_A          124 SGSRDKTIKVWTIKGQCLATLLG-----HNDWVSQVRVVPNEKADDDSVTIISA-----------------GNDKMVKAW  181 (319)
T ss_dssp             EEETTSCEEEEETTSCEEEEECC-----CSSCEEEEEECCC------CCEEEEE-----------------ETTSCEEEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEec-----cCCcEEEEEEccCCCCCCCccEEEEE-----------------eCCCEEEEE
Confidence            4 334447777877654443321     1123455666652     12233332                 235778888


Q ss_pred             cCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEE
Q 048181          185 NPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       185 d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      |..+++..... ..-...+.++++|||+ ++++-...+.|..+++...   .... .........+++.+  +|.+.++.
T Consensus       182 d~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~~~~sp--~~~~la~~  255 (319)
T 3frx_A          182 NLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK---KAMYTLSAQDEVFSLAFSP--NRYWLAAA  255 (319)
T ss_dssp             ETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTT---EEEEEEECCSCEEEEEECS--SSSEEEEE
T ss_pred             ECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---cEEEEecCCCcEEEEEEcC--CCCEEEEE
Confidence            87666544332 2233458999999998 5556667888988887532   2111 12223356688888  88765554


Q ss_pred             e
Q 048181          263 I  263 (310)
Q Consensus       263 ~  263 (310)
                      .
T Consensus       256 ~  256 (319)
T 3frx_A          256 T  256 (319)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.75  E-value=0.0045  Score=60.15  Aligned_cols=187  Identities=8%  Similarity=0.004  Sum_probs=105.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCC-ce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPD-GF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ..|..++++|+|+++.+.. .+.|+-++... .. ..+.                    .....-..+++. ++|+++++
T Consensus        19 g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~--------------------~h~~~v~~~~~s-pdg~~las   76 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT--------------------EHSHQTTVAKTS-PSGYYCAS   76 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC--------------------CCSSCEEEEEEC-TTSSEEEE
T ss_pred             CceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEec--------------------CCCCceEEEEEC-CCCcEEEE
Confidence            4688899999998666665 45787777653 22 2211                    112234578897 67776665


Q ss_pred             e-CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          112 D-AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       112 d-~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      - ....|...|..+++..... ...+ .-...++++++|+ |+..++-...             ....+.++.+|.. ..
T Consensus        77 g~~d~~v~lWd~~~~~~~~~~-~~~~-~~~~v~~v~fs~d-g~~l~~~~~~-------------~~~~~~v~~wd~~-~~  139 (611)
T 1nr0_A           77 GDVHGNVRIWDTTQTTHILKT-TIPV-FSGPVKDISWDSE-SKRIAAVGEG-------------RERFGHVFLFDTG-TS  139 (611)
T ss_dssp             EETTSEEEEEESSSTTCCEEE-EEEC-SSSCEEEEEECTT-SCEEEEEECC-------------SSCSEEEEETTTC-CB
T ss_pred             EeCCCCEEEeECCCCcceeeE-eecc-cCCceEEEEECCC-CCEEEEEECC-------------CCceeEEEEeeCC-CC
Confidence            3 3334666776543211110 1111 1124679999995 7665543211             0113567767632 11


Q ss_pred             EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee--eecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD--IINFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~--~~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ...+...-...+.++|+|++..++++-+..+.|..++...   +...  +.+-......+++.+  +|.+.++...
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~  210 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNP--DGSLFASTGG  210 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECT--TSSEEEEEET
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---CeEeeeeccccCceEEEEECC--CCCEEEEEEC
Confidence            1122223335689999999986677878888888887532   2211  112223456678888  8877665543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.73  E-value=0.025  Score=51.44  Aligned_cols=198  Identities=10%  Similarity=0.032  Sum_probs=108.3

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCc-eE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDG-FT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-  111 (310)
                      ...+++|.++|.++.+.. ++.+..++...+ .. .+......  .....................+++. ++|+++++ 
T Consensus        66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~s~  141 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA--NKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATG  141 (393)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------CCCCBEEEEEEC-TTSSEEEEE
T ss_pred             EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccc--ccccccccccccCCCceeEEEEEEC-CCCCEEEEE
Confidence            456899999999666654 567777775533 22 11100000  0000000000000011124578896 57766554 


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      .....|..+|.++++......   + +-...+.++++++ |..+++-.                 .+|.+..+|..+++.
T Consensus       142 ~~d~~i~iwd~~~~~~~~~~~---~-h~~~v~~~~~~p~-~~~l~s~s-----------------~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          142 AEDRLIRIWDIENRKIVMILQ---G-HEQDIYSLDYFPS-GDKLVSGS-----------------GDRTVRIWDLRTGQC  199 (393)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC---C-CSSCEEEEEECTT-SSEEEEEE-----------------TTSEEEEEETTTTEE
T ss_pred             cCCCeEEEEECCCCcEEEEEc---c-CCCCEEEEEEcCC-CCEEEEec-----------------CCCcEEEEECCCCee
Confidence            334447888988776533222   1 1234578999995 76666543                 247788888877765


Q ss_pred             EEeecCCCCCceeEEcc-CCCEEEEEecCCCeEEEEEecCCCCCcee-ee-------cCCCCCceeeeCCCCCCcEEEEE
Q 048181          192 TVLLRNLTGPAGVAISV-DSSFLLVSEFTGNRTLKYWLRGPRANSFD-II-------NFQAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~~-------~l~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      ......-.....++++| +|+ ++++-...+.|..+++....  ... +.       +-......+++++  +|.+.++.
T Consensus       200 ~~~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~--~g~~l~s~  274 (393)
T 1erj_A          200 SLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTR--DGQSVVSG  274 (393)
T ss_dssp             EEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECT--TSSEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECC--CCCEEEEE
Confidence            54444334567899999 777 55666677888888865321  111 10       1112345678888  88766554


Q ss_pred             e
Q 048181          263 I  263 (310)
Q Consensus       263 ~  263 (310)
                      .
T Consensus       275 s  275 (393)
T 1erj_A          275 S  275 (393)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.73  E-value=0.011  Score=53.91  Aligned_cols=167  Identities=7%  Similarity=0.026  Sum_probs=95.0

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEE
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYI  110 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyV  110 (310)
                      .-....+++|.++|+++++. .++.|..++.......+......          ...+.........++++ +++ ++++
T Consensus       176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~-p~~~~~l~  243 (447)
T 3dw8_B          176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK----------PANMEELTEVITAAEFH-PNSCNTFV  243 (447)
T ss_dssp             CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC----------CSSGGGCCCCEEEEEEC-SSCTTEEE
T ss_pred             CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc----------cccccccCcceEEEEEC-CCCCcEEE
Confidence            33567799999999988887 79999999987222211100000          00011122346688997 555 5555


Q ss_pred             E-eCCCcEEEEeCCCCeE-----EEeeccCCC-------ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCC
Q 048181          111 A-DAYSGLLVVGPNGRLA-----TQLATGAEG-------QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDS  177 (310)
Q Consensus       111 a-d~~~gi~~id~~~~~~-----~~~~~~~~g-------~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~  177 (310)
                      + .....|..+|..+++.     ..+......       ......+.+++++ +|+++++-.                 .
T Consensus       244 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~-----------------~  305 (447)
T 3dw8_B          244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRD-----------------Y  305 (447)
T ss_dssp             EEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEE-----------------S
T ss_pred             EEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEee-----------------C
Confidence            4 4444488888776552     322111000       0011467899999 487766532                 1


Q ss_pred             CceEEEEcCCC-CeEEEeecCCCC----------------CceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          178 TGRLLSYNPRS-SQVTVLLRNLTG----------------PAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       178 ~G~l~~~d~~~-g~~~~~~~~l~~----------------pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                       |.|..+|..+ ++.......-..                ...++|+|+|++| ++-+..+.|+.+++..
T Consensus       306 -~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          306 -LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             -SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTT
T ss_pred             -CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCC
Confidence             5677777653 332111111111                1239999999865 6777889999998864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.73  E-value=0.0071  Score=54.88  Aligned_cols=155  Identities=11%  Similarity=0.104  Sum_probs=96.9

Q ss_pred             cceEEEcc-CCCEEEEEeCCCeEEEEECCCc-e--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           36 GESIAFEP-VGGAFYTGVADGRILKYQAPDG-F--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        36 Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~-~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ..++++.+ +++++++...++.|.-++.... .  ..+.                    ........+++. ++++.+++
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~--------------------~h~~~v~~v~~~-p~~~~l~s  266 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH--------------------GHEGDINSVKFF-PDGQRFGT  266 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC--------------------CCSSCCCEEEEC-TTSSEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC--------------------CcCCCeEEEEEe-cCCCeEEE
Confidence            34566765 6777888888888888886421 1  1110                    112334678997 67777666


Q ss_pred             eCCCc-EEEEeCCCCeEEEeeccCC---CccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          112 DAYSG-LLVVGPNGRLATQLATGAE---GQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       112 d~~~g-i~~id~~~~~~~~~~~~~~---g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      -...+ |..+|..+++.........   .........+++++ +|++.++-..                 +|.++.+|..
T Consensus       267 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~-----------------dg~i~vwd~~  328 (380)
T 3iz6_a          267 GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYS-----------------NGDCYVWDTL  328 (380)
T ss_dssp             ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECT-----------------TSCEEEEETT
T ss_pred             EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEEC-----------------CCCEEEEECC
Confidence            54444 7888988765433222111   11223467899999 4887776543                 4778888876


Q ss_pred             CCeEEEeec-----CCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          188 SSQVTVLLR-----NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       188 ~g~~~~~~~-----~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      +++......     .-..-+.++|+|||+ ++++-+..+.|..+++.+
T Consensus       329 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          329 LAEMVLNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             TCCEEEEECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEECCS
T ss_pred             CCceEEEEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEecCC
Confidence            665433221     123457899999998 456667788888888765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.72  E-value=0.019  Score=49.74  Aligned_cols=75  Identities=5%  Similarity=-0.080  Sum_probs=45.8

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCce---EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGF---TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLY  109 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~Ly  109 (310)
                      ....+++|.++|+++++...++.|..++.....   .....                 +.........+++.+. +++++
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~d~~~l   74 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDS-----------------WRAHDSSIVAIDWASPEYGRII   74 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEE-----------------EECCSSCEEEEEECCGGGCSEE
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecce-----------------eccCCCcEEEEEEcCCCCCCEE
Confidence            457789999999988888889999888765321   11110                 0112234567888632 36555


Q ss_pred             EE-eCCCcEEEEeCCCC
Q 048181          110 IA-DAYSGLLVVGPNGR  125 (310)
Q Consensus       110 Va-d~~~gi~~id~~~~  125 (310)
                      ++ .....|..+|.+++
T Consensus        75 ~s~~~dg~v~vwd~~~~   91 (351)
T 3f3f_A           75 ASASYDKTVKLWEEDPD   91 (351)
T ss_dssp             EEEETTSCEEEEEECTT
T ss_pred             EEEcCCCeEEEEecCCC
Confidence            54 43334666676554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.019  Score=49.41  Aligned_cols=205  Identities=9%  Similarity=-0.052  Sum_probs=109.0

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      .+.-....++++ ++++++++...++.|..++...........                  ........+++. ++++++
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~------------------~~~~~v~~~~~~-~~~~~l   74 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY------------------TGQGFLNSVCYD-SEKELL   74 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE------------------ECSSCEEEEEEE-TTTTEE
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee------------------cCCccEEEEEEC-CCCCEE
Confidence            333456778999 889888898899999999876543221100                  112345688997 556555


Q ss_pred             E-EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 I-ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 V-ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      + +.....+..++..............+ .-.....++++.  ..++.+.                  .+|.+..+|.. 
T Consensus        75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~l~~~~------------------~d~~i~~~d~~-  132 (313)
T 3odt_A           75 LFGGKDTMINGVPLFATSGEDPLYTLIG-HQGNVCSLSFQD--GVVISGS------------------WDKTAKVWKEG-  132 (313)
T ss_dssp             EEEETTSCEEEEETTCCTTSCC-CEECC-CSSCEEEEEEET--TEEEEEE------------------TTSEEEEEETT-
T ss_pred             EEecCCCeEEEEEeeecCCCCcccchhh-cccCEEEEEecC--CEEEEEe------------------CCCCEEEEcCC-
Confidence            4 44443466566443210000011111 112345666642  4444332                  24677777732 


Q ss_pred             CeEEEeecCCCCCceeEEcc-CCCEEEEEecCCCeEEEEEecCCCCCceeeec-CCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          189 SQVTVLLRNLTGPAGVAISV-DSSFLLVSEFTGNRTLKYWLRGPRANSFDIIN-FQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       189 g~~~~~~~~l~~pnGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~-l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      .....+...-.....+++.+ +++. +++-...+.|..++...   ....+.. .......+++.+  +|.++++.... 
T Consensus       133 ~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~dg-  205 (313)
T 3odt_A          133 SLVYNLQAHNASVWDAKVVSFSENK-FLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVD--DGHFISCSNDG-  205 (313)
T ss_dssp             EEEEEEECCSSCEEEEEEEETTTTE-EEEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEE--TTEEEEEETTS-
T ss_pred             cEEEecccCCCceeEEEEccCCCCE-EEEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcC--CCeEEEccCCC-
Confidence            22333333334557888888 7775 45556677888887321   1111122 334466788888  88855554443 


Q ss_pred             CCCCCCceeeEEECC-CCcEEEEEec
Q 048181          267 QPAGTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       267 ~~~~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                              .+..+|. +++.+..+..
T Consensus       206 --------~i~i~d~~~~~~~~~~~~  223 (313)
T 3odt_A          206 --------LIKLVDMHTGDVLRTYEG  223 (313)
T ss_dssp             --------EEEEEETTTCCEEEEEEC
T ss_pred             --------eEEEEECCchhhhhhhhc
Confidence                    4555553 3555555443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.71  E-value=0.022  Score=52.01  Aligned_cols=216  Identities=8%  Similarity=0.005  Sum_probs=115.4

Q ss_pred             CcceEEEccCC--CEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCC-----c--------------------cc
Q 048181           35 GGESIAFEPVG--GAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGT-----T--------------------NL   87 (310)
Q Consensus        35 ~Pegia~d~~G--~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~-----~--------------------~~   87 (310)
                      ...+++|.+++  ..+++...++.|.-++...+..........    ..+|.     .                    ..
T Consensus        95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (447)
T 3dw8_B           95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLK----EEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR  170 (447)
T ss_dssp             CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC------------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred             ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceeccc----CccccccCcccccceEeccccchheeeeccceE
Confidence            46689999997  778888888888877754321110000000    00000     0                    00


Q ss_pred             c-CCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCCC-CeEEEeec----cCCCccccCccceEEeCCCC-eEEEEcCC
Q 048181           88 D-LGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNG-RLATQLAT----GAEGQAFHFLDGLDVDQGTG-VVYFTDAS  160 (310)
Q Consensus        88 ~-~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~~-~~~~~~~~----~~~g~~~~~pndvavd~~~G-~lyvtd~~  160 (310)
                      . ..........+++. ++++++++.....|..+|... ++...+..    ...+ .-...+.++++|+ | +++++-..
T Consensus       171 ~~~~~h~~~v~~~~~~-~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~-~~~~l~s~~~  247 (447)
T 3dw8_B          171 IFANAHTYHINSISIN-SDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEE-LTEVITAAEFHPN-SCNTFVYSSS  247 (447)
T ss_dssp             EECSCCSSCCCEEEEC-TTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGG-CCCCEEEEEECSS-CTTEEEEEET
T ss_pred             EeccCCCcceEEEEEc-CCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccc-cCcceEEEEECCC-CCcEEEEEeC
Confidence            0 01122334578997 577776665333477788773 22222110    1111 2234678999995 6 66665432


Q ss_pred             CccCccceeEeeeecCCCceEEEEcCCCCeE-----EEeecCCC------------CCceeEEccCCCEEEEEecCCCeE
Q 048181          161 GVYDFRTIVKLNITNDSTGRLLSYNPRSSQV-----TVLLRNLT------------GPAGVAISVDSSFLLVSEFTGNRT  223 (310)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~-----~~~~~~l~------------~pnGIa~~~dg~~Lyv~d~~~~~I  223 (310)
                                       +|.|..+|..+++.     ..+...-.            ..+.++|+|+|++|+.+. . +.|
T Consensus       248 -----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v  308 (447)
T 3dw8_B          248 -----------------KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSV  308 (447)
T ss_dssp             -----------------TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEE
T ss_pred             -----------------CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeE
Confidence                             46777777766553     33332221            457999999999666554 4 889


Q ss_pred             EEEEecCCCCCceeeecCCCC---------------CceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC-CcEE
Q 048181          224 LKYWLRGPRANSFDIINFQAK---------------PHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF-GAVL  286 (310)
Q Consensus       224 ~~~~~~~~~~g~~~~~~l~g~---------------Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~~  286 (310)
                      ..+++.....-...+..-...               .-.+++++  +|.+.++....        +.+..+|-+ |+.+
T Consensus       309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~--~~~~l~s~s~d--------g~v~iwd~~~~~~~  377 (447)
T 3dw8_B          309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG--SDSVVMTGSYN--------NFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT--TSSEEEEECST--------TEEEEEETTTCCEE
T ss_pred             EEEeCCCCccccceeeccccccccccccccccccccceEEEECC--CCCEEEEeccC--------CEEEEEEcCCCcce
Confidence            988886311111111100000               11288999  99866555443        367778854 5544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.67  E-value=0.0051  Score=55.02  Aligned_cols=158  Identities=9%  Similarity=0.004  Sum_probs=90.0

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           33 AFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      -....+++|.++|+++++...++.|..++.... ...+..                 +.........+++. ++++++++
T Consensus        61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~-----------------~~~h~~~v~~v~~s-p~~~~l~s  122 (345)
T 3fm0_A           61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT-----------------LEGHENEVKSVAWA-PSGNLLAT  122 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE-----------------ECCCSSCEEEEEEC-TTSSEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE-----------------ccCCCCCceEEEEe-CCCCEEEE
Confidence            345678999999998888888888887765532 221110                 01122345689997 56666554


Q ss_pred             -eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          112 -DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       112 -d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                       .....|..+|..++..........+ .-...+.++++|+ |.++++-..                 +|.+..+|..+++
T Consensus       123 ~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~-~~~l~s~s~-----------------d~~i~~w~~~~~~  183 (345)
T 3fm0_A          123 CSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPS-QELLASASY-----------------DDTVKLYREEEDD  183 (345)
T ss_dssp             EETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSS-SSCEEEEET-----------------TSCEEEEEEETTE
T ss_pred             EECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCC-CCEEEEEeC-----------------CCcEEEEEecCCC
Confidence             4444466666654322111111111 1233568899994 776665432                 3455555544443


Q ss_pred             EE---EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEe
Q 048181          191 VT---VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWL  228 (310)
Q Consensus       191 ~~---~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~  228 (310)
                      ..   .+...-...+.|+|+|+|++| ++-+..+.|..++.
T Consensus       184 ~~~~~~~~~h~~~v~~l~~sp~g~~l-~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          184 WVCCATLEGHESTVWSLAFDPSGQRL-ASCSDDRTVRIWRQ  223 (345)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEEE
T ss_pred             EEEEEEecCCCCceEEEEECCCCCEE-EEEeCCCeEEEecc
Confidence            22   222223355899999999854 55556666666654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.66  E-value=0.031  Score=50.57  Aligned_cols=84  Identities=8%  Similarity=-0.044  Sum_probs=50.9

Q ss_pred             CCceEEEEcCCC-C-eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ec-------CCCCCc
Q 048181          177 STGRLLSYNPRS-S-QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-IN-------FQAKPH  246 (310)
Q Consensus       177 ~~G~l~~~d~~~-g-~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~-------l~g~Pd  246 (310)
                      .+|.+..+|... + .+..+...-...+.++|+|||+ ++++-+..+.|..+++....  .... ..       ......
T Consensus       226 ~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~  302 (380)
T 3iz6_a          226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVT  302 (380)
T ss_dssp             TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCS
T ss_pred             CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceE
Confidence            356777777642 2 2233333334568999999998 56677788888888875321  1111 11       011246


Q ss_pred             eeeeCCCCCCcEEEEEecC
Q 048181          247 NIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       247 gl~~d~~~dG~l~va~~~~  265 (310)
                      .+++.+  +|.+.++....
T Consensus       303 ~~~~s~--~g~~l~~g~~d  319 (380)
T 3iz6_a          303 SVAFSI--SGRLLFAGYSN  319 (380)
T ss_dssp             EEEECS--SSSEEEEECTT
T ss_pred             EEEECC--CCCEEEEEECC
Confidence            788888  88877665543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.65  E-value=0.027  Score=49.60  Aligned_cols=191  Identities=10%  Similarity=0.031  Sum_probs=110.1

Q ss_pred             CCCCCCCcceEEEccCC-CEEEEEeCCCeEEEEECCCc--eE--EeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181           29 FPPKAFGGESIAFEPVG-GAFYTGVADGRILKYQAPDG--FT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY  103 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~G-~l~~~d~~~g~I~r~~~~g~--~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~  103 (310)
                      +.+.-....++++.+++ +++++...++.|..++..+.  ..  .+..                 +......-..+++. 
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~-----------------~~~h~~~v~~~~~s-   74 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS-----------------FKGHSHIVQDCTLT-   74 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEE-----------------EECCSSCEEEEEEC-
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceE-----------------EeCCcccEEEEEEC-
Confidence            34444556789998864 78888888998887765321  10  0100                 00112234578886 


Q ss_pred             CCCeEEEE-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          104 ATRQLYIA-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       104 ~~g~LyVa-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                      ++|+++++ .....|..+|.++++......   + +-...+.++++++ +.++++-..                 +|.+.
T Consensus        75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~---~-h~~~v~~~~~~~~-~~~l~s~s~-----------------D~~i~  132 (319)
T 3frx_A           75 ADGAYALSASWDKTLRLWDVATGETYQRFV---G-HKSDVMSVDIDKK-ASMIISGSR-----------------DKTIK  132 (319)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEE---C-CSSCEEEEEECTT-SCEEEEEET-----------------TSCEE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCeeEEEc---c-CCCcEEEEEEcCC-CCEEEEEeC-----------------CCeEE
Confidence            56766554 444447788988776432211   1 1234578899994 777766432                 35666


Q ss_pred             EEcCCCCeEEEeecCCCCCceeEEccCCC-----EEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCC
Q 048181          183 SYNPRSSQVTVLLRNLTGPAGVAISVDSS-----FLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLL  255 (310)
Q Consensus       183 ~~d~~~g~~~~~~~~l~~pnGIa~~~dg~-----~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~d  255 (310)
                      .+|.....+..+...-.....+++.|.++     .++++-...+.|..+++..   +....  .+-......+++.+  +
T Consensus       133 vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~sp--~  207 (319)
T 3frx_A          133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ---FQIEADFIGHNSNINTLTASP--D  207 (319)
T ss_dssp             EEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT---TEEEEEECCCCSCEEEEEECT--T
T ss_pred             EEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc---chhheeecCCCCcEEEEEEcC--C
Confidence            67765444444444334456788877432     2566767788888888753   22211  12223346678888  8


Q ss_pred             CcEEEEEec
Q 048181          256 QTFWEAAII  264 (310)
Q Consensus       256 G~l~va~~~  264 (310)
                      |.+.++...
T Consensus       208 g~~l~s~~~  216 (319)
T 3frx_A          208 GTLIASAGK  216 (319)
T ss_dssp             SSEEEEEET
T ss_pred             CCEEEEEeC
Confidence            876665443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.65  E-value=0.009  Score=59.19  Aligned_cols=82  Identities=10%  Similarity=0.091  Sum_probs=51.0

Q ss_pred             CceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCC--CCceeeeCCCC
Q 048181          178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQA--KPHNIKRNPGL  254 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g--~Pdgl~~d~~~  254 (310)
                      .|.|..+|+.+|++.-....-...+|..++.+++.+|+. +..+.++.++...   |+..- ..++.  ...-+....  
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~t---G~~lw~~~~~~~~~~~p~~y~~--  529 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAAT---GEKLWEAPTGTGVVAAPSTYMV--  529 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCCEEEEE--
T ss_pred             ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCC---CceeeeeeCCCCcccCCEEEEe--
Confidence            488999999998764333222224677788888888887 6789999998753   33211 22221  111244446  


Q ss_pred             CCcEEEEEecC
Q 048181          255 LQTFWEAAIIT  265 (310)
Q Consensus       255 dG~l~va~~~~  265 (310)
                      +|..|++....
T Consensus       530 ~G~~~v~~~~G  540 (677)
T 1kb0_A          530 DGRQYVSVAVG  540 (677)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEecc
Confidence            88888876443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.65  E-value=0.026  Score=49.27  Aligned_cols=187  Identities=11%  Similarity=0.060  Sum_probs=104.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-Ee
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-AD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad  112 (310)
                      ....+++|.++|+++++...++.|..++...........                  ........+.+. ..+..++ +.
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~-~~~~~l~s~s  147 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV------------------GHTKDVLSVAFS-SDNRQIVSGS  147 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------------------CCSSCEEEEEEC-TTSSCEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec------------------CCCCceeEEEEe-ecCccceeec
Confidence            456789999999988888889999888877544322110                  112233345554 4454444 44


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCC-CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGT-GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~-G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      ....+..+|..........  ..+ .-...+.+++.++. ..++++-.                 .++.+..+|..+++.
T Consensus       148 ~d~~~~~~d~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~s~~-----------------~d~~i~i~d~~~~~~  207 (340)
T 4aow_A          148 RDKTIKLWNTLGVCKYTVQ--DES-HSEWVSCVRFSPNSSNPIIVSCG-----------------WDKLVKVWNLANCKL  207 (340)
T ss_dssp             TTSCEEEECTTSCEEEEEC--SSS-CSSCEEEEEECSCSSSCEEEEEE-----------------TTSCEEEEETTTTEE
T ss_pred             CCCeEEEEEeCCCceEEEE--ecc-ccCcccceEEccCCCCcEEEEEc-----------------CCCEEEEEECCCCce
Confidence            4444667776654332221  111 11234456665531 23444322                 246677778776665


Q ss_pred             EEeecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          192 TVLLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       192 ~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .....+ -...+.|+|+|||++ +++-...+.|..+++...  ..............+++.+  ++.+.++...
T Consensus       208 ~~~~~~h~~~v~~~~~s~~~~~-l~s~s~Dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d  276 (340)
T 4aow_A          208 KTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQAMLWDLNEG--KHLYTLDGGDIINALCFSP--NRYWLCAATG  276 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSE-EEEEETTCEEEEEETTTT--EEEEEEECSSCEEEEEECS--SSSEEEEEET
T ss_pred             eeEecCCCCcEEEEEECCCCCE-EEEEeCCCeEEEEEeccC--ceeeeecCCceEEeeecCC--CCceeeccCC
Confidence            443332 234578999999984 555567788888887532  1111111122345566666  6666555443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.65  E-value=0.026  Score=49.27  Aligned_cols=204  Identities=12%  Similarity=0.019  Sum_probs=117.5

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-eC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-DA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d~  113 (310)
                      ....+++.++++++++...++.|..++...+......                  .........+++. +++.++++ ..
T Consensus        57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~------------------~~h~~~v~~~~~~-~~~~~l~sgs~  117 (304)
T 2ynn_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF------------------EAHPDYIRSIAVH-PTKPYVLSGSD  117 (304)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE------------------ECCSSCEEEEEEC-SSSSEEEEEET
T ss_pred             cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE------------------eCCCCcEEEEEEc-CCCCEEEEECC
Confidence            3467889999998999999999999997744322111                  0122345688997 56665554 44


Q ss_pred             CCcEEEEeCCCC-eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 YSGLLVVGPNGR-LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~~gi~~id~~~~-~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ...|...|.+++ ......   .+ +-...+.++++|.++.++++-.                 .+|.+..+|..++...
T Consensus       118 D~~v~lWd~~~~~~~~~~~---~~-h~~~v~~v~~~p~~~~~l~sgs-----------------~D~~v~iwd~~~~~~~  176 (304)
T 2ynn_A          118 DLTVKLWNWENNWALEQTF---EG-HEHFVMCVAFNPKDPSTFASGC-----------------LDRTVKVWSLGQSTPN  176 (304)
T ss_dssp             TSCEEEEEGGGTTEEEEEE---CC-CCSCEEEEEECTTCTTEEEEEE-----------------TTSEEEEEETTCSSCS
T ss_pred             CCeEEEEECCCCcchhhhh---cc-cCCcEEEEEECCCCCCEEEEEe-----------------CCCeEEEEECCCCCcc
Confidence            444777787654 222211   11 1234578899885466666543                 2466777776443321


Q ss_pred             -Eeec-CCCCCceeEEcc--CCCEEEEEecCCCeEEEEEecCCCCCce-e-eecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          193 -VLLR-NLTGPAGVAISV--DSSFLLVSEFTGNRTLKYWLRGPRANSF-D-IINFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       193 -~~~~-~l~~pnGIa~~~--dg~~Lyv~d~~~~~I~~~~~~~~~~g~~-~-~~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                       .+.. .-..-+.+++++  +++ ++++-+..+.|..+++..   +.. . +.+-......+++.+  ++.+.++...-+
T Consensus       177 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~---~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~Dg  250 (304)
T 2ynn_A          177 FTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT---KSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDG  250 (304)
T ss_dssp             EEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECS--SSSEEEEEETTS
T ss_pred             ceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCC---CccceeeCCCCCCEEEEEECC--CCCEEEEEcCCC
Confidence             1111 112335677765  665 556667788898888753   221 1 122222345678888  887666654432


Q ss_pred             CCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          267 QPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       267 ~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                              .+..+|. .++.+..+...
T Consensus       251 --------~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          251 --------TLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             --------CEEEEETTTCCEEEEECCS
T ss_pred             --------eEEEEECCCCceeeeccCC
Confidence                    4666664 46666665543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.64  E-value=0.017  Score=50.62  Aligned_cols=154  Identities=10%  Similarity=0.003  Sum_probs=92.1

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe--EE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ--LY  109 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~--Ly  109 (310)
                      ....+++|.++|.++++...++.|..++.....  .....                 ..........+++. ++++  |+
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~-~~~~~~l~   73 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ-----------------SLRYKHPLLCCNFI-DNTDLQIY   73 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE-----------------EEECSSCEEEEEEE-ESSSEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccccee-----------------eeecCCceEEEEEC-CCCCcEEE
Confidence            456789999999988888889988877754321  11110                 00122345688887 4565  55


Q ss_pred             EEeCCCcEEEEeC-CCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IADAYSGLLVVGP-NGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Vad~~~gi~~id~-~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ++.....|..++. ++++...+...   ..-...+.+++++ +..++.+..                  +|.|..+|..+
T Consensus        74 ~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~~------------------d~~i~iwd~~~  131 (342)
T 1yfq_A           74 VGTVQGEILKVDLIGSPSFQALTNN---EANLGICRICKYG-DDKLIAASW------------------DGLIEVIDPRN  131 (342)
T ss_dssp             EEETTSCEEEECSSSSSSEEECBSC---CCCSCEEEEEEET-TTEEEEEET------------------TSEEEEECHHH
T ss_pred             EEcCCCeEEEEEeccCCceEecccc---CCCCceEEEEeCC-CCEEEEEcC------------------CCeEEEEcccc
Confidence            5555555888998 87765444220   0123456888888 455554432                  35666666543


Q ss_pred             ---------CeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          189 ---------SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       189 ---------g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                               ++.......-.....+++++++  + ++-+..+.|..|++..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l-~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--L-IVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             HTTBCEEEEESCSSSSSSCCCEEEEEECSSE--E-EEEESTTEEEEEESSC
T ss_pred             cccccccccCCeeeEEeeCCceEEEEecCCc--E-EEEeCCCeEEEEECCc
Confidence                     2211111222356789999876  4 4446678899998865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.64  E-value=0.012  Score=51.79  Aligned_cols=193  Identities=7%  Similarity=0.003  Sum_probs=106.4

Q ss_pred             CCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-E
Q 048181           34 FGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-A  111 (310)
Q Consensus        34 ~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-a  111 (310)
                      ....+++|.+ +++++++...++.|..++...+.......               ...........++++ ++++.++ +
T Consensus       116 ~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------~~~~~~~~v~~~~~~-~~~~~l~~~  179 (366)
T 3k26_A          116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG---------------GVEGHRDEVLSADYD-LLGEKIMSC  179 (366)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC---------------STTSCSSCEEEEEEC-TTSSEEEEE
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec---------------ccccccCceeEEEEC-CCCCEEEEe
Confidence            4577899999 88988888889999999987543221110               001223456789997 4565544 4


Q ss_pred             eCCCcEEEEeCCCCeEEEeecc-----CCC-------------------ccccCccceEEeCCCCeEEEEcCCCccCccc
Q 048181          112 DAYSGLLVVGPNGRLATQLATG-----AEG-------------------QAFHFLDGLDVDQGTGVVYFTDASGVYDFRT  167 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~-----~~g-------------------~~~~~pndvavd~~~G~lyvtd~~~~~~~~~  167 (310)
                      .....|..+|..+++.......     .++                   ..-...+.++++.  . ++++-         
T Consensus       180 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~---------  247 (366)
T 3k26_A          180 GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG--D-LILSK---------  247 (366)
T ss_dssp             ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET--T-EEEEE---------
T ss_pred             cCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC--C-EEEEE---------
Confidence            4444588888776432110000     000                   0112234455541  2 33332         


Q ss_pred             eeEeeeecCCCceEEEEcCCCCe---------------EEEeecCCCCCceeEEccC--CCEEEEEecCCCeEEEEEecC
Q 048181          168 IVKLNITNDSTGRLLSYNPRSSQ---------------VTVLLRNLTGPAGVAISVD--SSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       168 ~~~~~~~~~~~G~l~~~d~~~g~---------------~~~~~~~l~~pnGIa~~~d--g~~Lyv~d~~~~~I~~~~~~~  230 (310)
                              ..+|.+..+|..+++               +..+...-...+.++++|+  +++| ++-...+.|..+++..
T Consensus       248 --------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l-~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          248 --------SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML-ALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             --------CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE-EEECTTSCEEEEECCS
T ss_pred             --------ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE-EEEecCCcEEEEECCC
Confidence                    224566666644331               1122222334678999999  8854 5557788899999875


Q ss_pred             CCCCcee---eecC--CCCCceeeeCCCCCCcEEEEEecC
Q 048181          231 PRANSFD---IINF--QAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       231 ~~~g~~~---~~~l--~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ...-...   +..-  .+....+++++  +|++.++....
T Consensus       319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d  356 (366)
T 3k26_A          319 EDPHKAKCTTLTHHKCGAAIRQTSFSR--DSSILIAVCDD  356 (366)
T ss_dssp             SSGGGCEEEEECCTTCCSCEEEEEECT--TSSEEEEEETT
T ss_pred             CCCccccceEEcccccCCceEEEEeCC--CCCeEEEEeCC
Confidence            3211111   1111  23467789998  89877665543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.62  E-value=0.015  Score=51.25  Aligned_cols=230  Identities=7%  Similarity=-0.037  Sum_probs=111.9

Q ss_pred             CCcceEEEcc--CCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEE
Q 048181           34 FGGESIAFEP--VGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLY  109 (310)
Q Consensus        34 ~~Pegia~d~--~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~Ly  109 (310)
                      ....+++|.+  +|+++++...++.|..++...+ ......                 +.........+++.+. +|.++
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-----------------~~~h~~~V~~v~~~p~~~g~~l  120 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE-----------------HAGHDSSVNSVCWAPHDYGLIL  120 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE-----------------ECCCSSCCCEEEECCTTTCSCE
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE-----------------ccCCCCceEEEEECCCCCCcEE
Confidence            3456788864  4787888888899888887643 111110                 0011223457888633 26555


Q ss_pred             EEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCC--CeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          110 IADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGT--GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       110 Vad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~--G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      ++-... .|..++..++..........+ +....+.++++|+.  +.+.-..... . .. ....+.....+|.+..+|.
T Consensus       121 asgs~D~~i~lwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~l~sgs~D~~v~lWd~  196 (316)
T 3bg1_A          121 ACGSSDGAISLLTYTGEGQWEVKKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQ-K-PN-YIKRFASGGCDNLIKLWKE  196 (316)
T ss_dssp             EEECSSSCEEEEEECSSSCEEECCBTTS-SSSCBCCCEECCCCCC------CCSC-C-CC-CCCBEECCBTTSBCCEEEE
T ss_pred             EEEcCCCCEEEEecCCCCCcceeeeecc-ccCCcceEEEccccCCcccccccccc-C-cc-ccceEEEecCCCeEEEEEe
Confidence            554433 366666654321111111122 11234566666631  1111000000 0 00 0000122233455555554


Q ss_pred             CCC-eEE---EeecCCCCCceeEEccCC---CEEEEEecCCCeEEEEEecCCCCCc--eee-ecCCCCCceeeeCCCCCC
Q 048181          187 RSS-QVT---VLLRNLTGPAGVAISVDS---SFLLVSEFTGNRTLKYWLRGPRANS--FDI-INFQAKPHNIKRNPGLLQ  256 (310)
Q Consensus       187 ~~g-~~~---~~~~~l~~pnGIa~~~dg---~~Lyv~d~~~~~I~~~~~~~~~~g~--~~~-~~l~g~Pdgl~~d~~~dG  256 (310)
                      .++ ..+   .+...-..-+.++|+|++   ..++++-+..+.|..+++.....+.  ... ....+....+++.+  +|
T Consensus       197 ~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~g  274 (316)
T 3bg1_A          197 EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI--TA  274 (316)
T ss_dssp             CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT--TT
T ss_pred             CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC--CC
Confidence            322 111   122222345899999986   2366777788899888876421111  112 23334456789999  99


Q ss_pred             cEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecC
Q 048181          257 TFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFE  292 (310)
Q Consensus       257 ~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p  292 (310)
                      ++.++....+      .-.+...+.+|+....-.+.
T Consensus       275 ~~las~~~D~------~v~lw~~~~~g~~~~~~~~~  304 (316)
T 3bg1_A          275 NILAVSGGDN------KVTLWKESVDGQWVCISDVN  304 (316)
T ss_dssp             CCEEEEESSS------CEEEEEECTTSCEEEEEECC
T ss_pred             CEEEEEcCCC------eEEEEEECCCCcEEEeeecc
Confidence            8766655432      12344445567655444444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.02  Score=50.88  Aligned_cols=143  Identities=10%  Similarity=-0.001  Sum_probs=85.4

Q ss_pred             ceeeEEEecC--CCeEEE-EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181           95 RTFGLALHYA--TRQLYI-ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus        95 ~P~Gla~d~~--~g~LyV-ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~  171 (310)
                      ....++++ +  ++++++ +.....|..+|..+++...+....   .-...+.++++| +|.++++-..           
T Consensus       127 ~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---~~~~i~~~~~~p-dg~~lasg~~-----------  190 (343)
T 3lrv_A          127 EIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK---SDVEYSSGVLHK-DSLLLALYSP-----------  190 (343)
T ss_dssp             CEEEEECC-C---CCEEEEEETTCCEEEEESSSSCEEEEECCC---SSCCCCEEEECT-TSCEEEEECT-----------
T ss_pred             CEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC---CCCceEEEEECC-CCCEEEEEcC-----------
Confidence            35578886 5  666666 444445888888877653332111   112367899999 4888776432           


Q ss_pred             eeecCCCceEEEEcCCCCeEE--Eeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecC--CCCC-
Q 048181          172 NITNDSTGRLLSYNPRSSQVT--VLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINF--QAKP-  245 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g~~~--~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l--~g~P-  245 (310)
                            +|.|..+|..+++..  .+.. .-...+.|+|+|+|++|+.+.  .+.|..+++..... ...+..+  ...+ 
T Consensus       191 ------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~-~~~~~~~~~~~~~~  261 (343)
T 3lrv_A          191 ------DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVG-TLAYPTYTIPEFKT  261 (343)
T ss_dssp             ------TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTT-CBSSCCCBC-----
T ss_pred             ------CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCc-ceeecccccccccc
Confidence                  467888887766543  2222 234568999999998776665  33888888864311 1111111  1123 


Q ss_pred             --ceeeeCCCCCCcEEEEEec
Q 048181          246 --HNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       246 --dgl~~d~~~dG~l~va~~~  264 (310)
                        ..+++++  +|.+.++...
T Consensus       262 ~~~~~~~~~--~g~~l~~~s~  280 (343)
T 3lrv_A          262 GTVTYDIDD--SGKNMIAYSN  280 (343)
T ss_dssp             CCEEEEECT--TSSEEEEEET
T ss_pred             cceEEEECC--CCCEEEEecC
Confidence              2499999  9987777544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.60  E-value=0.0012  Score=58.41  Aligned_cols=151  Identities=11%  Similarity=0.047  Sum_probs=86.4

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec---CCCeEEEEeCCCcE
Q 048181           41 FEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY---ATRQLYIADAYSGL  117 (310)
Q Consensus        41 ~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~---~~g~LyVad~~~gi  117 (310)
                      +.++++++++...++.|..++..........                   ........+++++   ....|+++.....|
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i  236 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWET-------------------NIKNGVCSLEFDRKDISMNKLVATSLEGKF  236 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEEE-------------------ECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeeec-------------------CCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence            5688998888888999999998755432110                   1123456788864   33445445444447


Q ss_pred             EEEeCCCCeEE-Eee-ccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC-----
Q 048181          118 LVVGPNGRLAT-QLA-TGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS-----  189 (310)
Q Consensus       118 ~~id~~~~~~~-~~~-~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g-----  189 (310)
                      ..+|..+++.. .+. ....+ .-...+.++++|+ |. ++++-..                 +|.+..+|..++     
T Consensus       237 ~i~d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~  297 (357)
T 3i2n_A          237 HVFDMRTQHPTKGFASVSEKA-HKSTVWQVRHLPQ-NRELFLTAGG-----------------AGGLHLWKYEYPIQRSK  297 (357)
T ss_dssp             EEEEEEEEETTTEEEEEEEEC-CSSCEEEEEEETT-EEEEEEEEET-----------------TSEEEEEEEECCSCC--
T ss_pred             EEEeCcCCCcccceeeeccCC-CcCCEEEEEECCC-CCcEEEEEeC-----------------CCcEEEeecCCCccccc
Confidence            77776543210 110 00001 1234678999994 76 5555332                 244444443211     


Q ss_pred             ---------------eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          190 ---------------QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       190 ---------------~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                                     .+..+...-.....++|+|+|+.|+++-...+.|..+++.
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence                           1112222233457999999999777677888899988875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.56  E-value=0.043  Score=53.14  Aligned_cols=208  Identities=12%  Similarity=0.111  Sum_probs=113.4

Q ss_pred             CCCCCCcceEEEccCCC-EEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           30 PPKAFGGESIAFEPVGG-AFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      .+.-....+++|.|++. ++++...++.|.-++.........                  +.........+++. ++|++
T Consensus       144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~------------------l~~H~~~V~~v~fs-pdg~~  204 (611)
T 1nr0_A          144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST------------------FGEHTKFVHSVRYN-PDGSL  204 (611)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE------------------ECCCSSCEEEEEEC-TTSSE
T ss_pred             cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee------------------eccccCceEEEEEC-CCCCE
Confidence            33334567899999986 577788889998888654321111                  01122345689997 67877


Q ss_pred             EEEeCC-CcEEEEeCCCCeEEEeecc--CCC-ccccCccceEEeCCCCeEEEEcCCCc----cCccc--eeE--------
Q 048181          109 YIADAY-SGLLVVGPNGRLATQLATG--AEG-QAFHFLDGLDVDQGTGVVYFTDASGV----YDFRT--IVK--------  170 (310)
Q Consensus       109 yVad~~-~gi~~id~~~~~~~~~~~~--~~g-~~~~~pndvavd~~~G~lyvtd~~~~----~~~~~--~~~--------  170 (310)
                      +++-.. ..|..+|..+++.......  ... .+-...+.++++|+ |+.++|-....    ++...  ...        
T Consensus       205 las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-GTKIASASADKTIKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred             EEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence            665433 4477788766554322211  000 12235678999994 77666643321    11100  000        


Q ss_pred             ------------eeeecCCCceEEEEcCCCCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee
Q 048181          171 ------------LNITNDSTGRLLSYNPRSSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD  237 (310)
Q Consensus       171 ------------~~~~~~~~G~l~~~d~~~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~  237 (310)
                                  .+.....+|.+..+|..+++..... ..-...+.++|+|||++|+ +-...+.|+.+++...   ...
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~-s~s~D~~v~~Wd~~~~---~~~  359 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDISTG---ISN  359 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTC---CEE
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCCC---cee
Confidence                        0112223556666666655433322 2233457899999998654 5556778888887532   211


Q ss_pred             -e--ecCCCCCceeeeCCCCCCcEEEEEe
Q 048181          238 -I--INFQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       238 -~--~~l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                       .  ..-......+++.+  +|.+..+..
T Consensus       360 ~~~~~~h~~~v~~~~~s~--~~~l~s~s~  386 (611)
T 1nr0_A          360 RVFPDVHATMITGIKTTS--KGDLFTVSW  386 (611)
T ss_dssp             ECSSCSCSSCEEEEEECT--TSCEEEEET
T ss_pred             eecccCCcceEEEEEECC--CCcEEEEEc
Confidence             1  11122345566766  666655543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.56  E-value=0.016  Score=56.23  Aligned_cols=83  Identities=2%  Similarity=-0.051  Sum_probs=48.7

Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCC--ceeeeCCC
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKP--HNIKRNPG  253 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~P--dgl~~d~~  253 (310)
                      ..|.|+.+|+.+|++.--...-....+..+...++.+|+. +..+.|+.++...   |+..- ..++...  .-+.... 
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g-~~dg~l~a~D~~t---G~~lw~~~~~~~~~~~p~~~~~-  516 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYA-TLDGYLKALDNKD---GKELWNFKMPSGGIGSPMTYSF-  516 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCCEEEEE-
T ss_pred             CCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEE-cCCCeEEEEECCC---CCEEEEEeCCCCcEeeeEEEEE-
Confidence            4589999999988764333222223455555455678885 5678899998642   33211 1222111  1134335 


Q ss_pred             CCCcEEEEEecC
Q 048181          254 LLQTFWEAAIIT  265 (310)
Q Consensus       254 ~dG~l~va~~~~  265 (310)
                       +|.+||+....
T Consensus       517 -~G~~yv~~~~G  527 (571)
T 2ad6_A          517 -KGKQYIGSMYG  527 (571)
T ss_dssp             -TTEEEEEEEEC
T ss_pred             -CCEEEEEEECC
Confidence             78999998765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.0099  Score=59.39  Aligned_cols=190  Identities=8%  Similarity=0.046  Sum_probs=106.1

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEEE-
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLYI-  110 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~LyV-  110 (310)
                      ....+++|.++|.++++...+|.|..++..+. ......                 +.........+++.+. ++++++ 
T Consensus        10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~-----------------l~~h~~~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT-----------------LTGHEGPVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEE-----------------ECCCSSCEEEEEECCTTSCSEEEE
T ss_pred             ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCcccee-----------------ccCCcCceEEEEecCCCCCCEEEE
Confidence            34667889999998888888999888876532 221110                 0112233457888532 155554 


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCC-CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGT-GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~-G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      +.....|..+|..+++...+... .+ .-.....++++|+. |+++++-.                 .+|.+..+|..++
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~~~~~-~~-h~~~V~~v~~sp~~~~~~l~sgs-----------------~dg~I~vwdl~~~  133 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVAS-----------------SDGKVSVVEFKEN  133 (753)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEECCSS
T ss_pred             EeCCCeEEEEECCCCcccccccc-cC-CCCCeEEEEECCCCCCCEEEEEe-----------------CCCcEEEEEeecC
Confidence            44444477777776653222211 11 12345788898831 55555432                 2467777776544


Q ss_pred             e---EEEeecCCCCCceeEEcc-------------CCCEEEEEecCCCeEEEEEecCCCCCceee-e---cCCCCCceee
Q 048181          190 Q---VTVLLRNLTGPAGVAISV-------------DSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I---NFQAKPHNIK  249 (310)
Q Consensus       190 ~---~~~~~~~l~~pnGIa~~~-------------dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~---~l~g~Pdgl~  249 (310)
                      .   .......-.....++++|             |++ ++++-+..+.|..+++.... ..... .   .-.+....++
T Consensus       134 ~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDA-QTYVLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             SCCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTT-TEEEEEEEECCCSSCEEEEE
T ss_pred             CCcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCc-ccceeeeeecCCCCcEEEEE
Confidence            1   222223333457889998             576 45555667888888886432 11111 1   1123356677


Q ss_pred             eCCCCC---CcEEEEEe
Q 048181          250 RNPGLL---QTFWEAAI  263 (310)
Q Consensus       250 ~d~~~d---G~l~va~~  263 (310)
                      +.+  +   |++.++..
T Consensus       212 ~sp--~~~~~~~l~s~s  226 (753)
T 3jro_A          212 WSP--TVLLRSYLASVS  226 (753)
T ss_dssp             ECC--CCSSSEEEEEEE
T ss_pred             ecc--CCCCCCEEEEEe
Confidence            777  7   66555543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.54  E-value=0.0074  Score=59.68  Aligned_cols=80  Identities=14%  Similarity=0.137  Sum_probs=49.4

Q ss_pred             CceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee----e-ecCCCCCceeeeCC
Q 048181          178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD----I-INFQAKPHNIKRNP  252 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~----~-~~l~g~Pdgl~~d~  252 (310)
                      .|.|+.+|+.+|++.-........++.++...|+.||+. +..+.|+.++...   |+..    + .++...|  +....
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~t---G~~l~~~~~~~~~~~~p--~~~~~  510 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADK---GEALWQFEAQSGIVAAP--MTFEL  510 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCC--EEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhc---ChhheEecCCCCcccCc--eEEEE
Confidence            488999999999764322222233566666677778887 6788999998752   3321    1 1222223  44445


Q ss_pred             CCCCcEEEEEecC
Q 048181          253 GLLQTFWEAAIIT  265 (310)
Q Consensus       253 ~~dG~l~va~~~~  265 (310)
                        +|.+||+...+
T Consensus       511 --~G~~yva~~~G  521 (668)
T 1kv9_A          511 --AGRQYVAIMAG  521 (668)
T ss_dssp             --TTEEEEEEEEC
T ss_pred             --CCEEEEEEEec
Confidence              78999886543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.54  E-value=0.041  Score=48.84  Aligned_cols=155  Identities=12%  Similarity=0.033  Sum_probs=85.6

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-------
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-------  106 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-------  106 (310)
                      ....+++|.++|+.+++...++.|.-++..+...... .               ...........+++. +.+       
T Consensus       119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~-~---------------~~~~~~~~v~~~~~~-~~~~~~~~~~  181 (343)
T 2xzm_R          119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS-A---------------EKENHSDWVSCVRYS-PIMKSANKVQ  181 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEEC-C---------------TTTSCSSCEEEEEEC-CCCCSCSCCC
T ss_pred             CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeee-e---------------cccCCCceeeeeeec-cccccccccC
Confidence            3466889999999888888889888888764322110 0               000111223455664 332       


Q ss_pred             ---eEEE-EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          107 ---QLYI-ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       107 ---~LyV-ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                         .+++ +.....|..+|........+ ..    .-...+.++++| +|+.+++-..                 +|.|.
T Consensus       182 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~----h~~~v~~~~~s~-~g~~l~sgs~-----------------dg~v~  238 (343)
T 2xzm_R          182 PFAPYFASVGWDGRLKVWNTNFQIRYTF-KA----HESNVNHLSISP-NGKYIATGGK-----------------DKKLL  238 (343)
T ss_dssp             SSCCEEEEEETTSEEEEEETTTEEEEEE-EC----CSSCEEEEEECT-TSSEEEEEET-----------------TCEEE
T ss_pred             CCCCEEEEEcCCCEEEEEcCCCceeEEE-cC----ccccceEEEECC-CCCEEEEEcC-----------------CCeEE
Confidence               3444 33334466677543222222 11    123467899999 4877766432                 46777


Q ss_pred             EEcCC-CCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          183 SYNPR-SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       183 ~~d~~-~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      .+|.. ..........-...+.++|+|++..|.++  ..+.|..+++..
T Consensus       239 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~--~d~~v~iw~~~~  285 (343)
T 2xzm_R          239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG--TDQGVKIFNLMT  285 (343)
T ss_dssp             EEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE--ESSCEEEEESSS
T ss_pred             EEECCCCcccceeecCCCcEEEEEECCCCCEEEEE--CCCCEEEEEeCC
Confidence            77762 22221112122346899999999855443  345577777653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.53  E-value=0.039  Score=48.40  Aligned_cols=80  Identities=14%  Similarity=0.057  Sum_probs=50.7

Q ss_pred             CCCCCcceEEEccC---CCEEEEEeCCCeEEEEECCC-ceEE-eeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           31 PKAFGGESIAFEPV---GGAFYTGVADGRILKYQAPD-GFTD-FAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        31 ~~~~~Pegia~d~~---G~l~~~d~~~g~I~r~~~~g-~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      +.-....+++|.++   |+++++...++.|..++... +... ...                  .........+++. ++
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------~~h~~~v~~~~~~-~~   97 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ------------------QMHTGPVLDVCWS-DD   97 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE------------------EECSSCEEEEEEC-TT
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe------------------ccccCCEEEEEEC-cC
Confidence            33356678999998   68888888899988888663 2221 110                  0112345688997 56


Q ss_pred             CeEEE-EeCCCcEEEEeCCCCeEEE
Q 048181          106 RQLYI-ADAYSGLLVVGPNGRLATQ  129 (310)
Q Consensus       106 g~LyV-ad~~~gi~~id~~~~~~~~  129 (310)
                      ++.++ +.....|..+|.++++...
T Consensus        98 ~~~l~s~~~dg~v~iwd~~~~~~~~  122 (368)
T 3mmy_A           98 GSKVFTASCDKTAKMWDLSSNQAIQ  122 (368)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCcEEEEEcCCCCcee
Confidence            65444 4444448888888776544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.53  E-value=0.025  Score=49.91  Aligned_cols=149  Identities=7%  Similarity=-0.022  Sum_probs=85.7

Q ss_pred             CcceEEEccCCC-EEEEEeC----CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-e
Q 048181           35 GGESIAFEPVGG-AFYTGVA----DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-Q  107 (310)
Q Consensus        35 ~Pegia~d~~G~-l~~~d~~----~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~  107 (310)
                      ....++|.|||+ ++|+...    ..+|+.++.+++. ..+..                    ... ...+++. ++| .
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~--------------------~~~-~~~~~ws-pdg~~  117 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE--------------------AKN-IRSLEWN-EDSRK  117 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE--------------------ESE-EEEEEEC-TTSSE
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc--------------------CCC-ccceeEC-CCCCE
Confidence            456789999996 5555543    2358888877543 22210                    011 4567786 455 4


Q ss_pred             EEEEeC---------------------------CCcEEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcC
Q 048181          108 LYIADA---------------------------YSGLLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDA  159 (310)
Q Consensus       108 LyVad~---------------------------~~gi~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~  159 (310)
                      |+++..                           ...|+.++.++++. +.+..     +  ....++++++ | ++++-.
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spd-g-~~~~~~  188 (347)
T 2gop_A          118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRD-K-IVVNVP  188 (347)
T ss_dssp             EEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETT-E-EEEEEE
T ss_pred             EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCC-e-EEEEEe
Confidence            655431                           13488999988876 54432     1  3567899994 7 655432


Q ss_pred             CCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC-------CCeEEEEE
Q 048181          160 SGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT-------GNRTLKYW  227 (310)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~-------~~~I~~~~  227 (310)
                      ...-..        ...+...|+.+|  +++.+.+...  ... ..++|||++|+++...       ..+|+.++
T Consensus       189 ~~~~~~--------~~~~~~~l~~~d--~~~~~~l~~~--~~~-~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          189 HREIIP--------QYFKFWDIYIWE--DGKEEKMFEK--VSF-YAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             CCCSSC--------CSSCCEEEEEEE--TTEEEEEEEE--ESE-EEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             cccccc--------cccccccEEEeC--CCceEEeccC--cce-eeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            110000        000134788898  5776666554  222 2349999988766532       35788887

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.52  E-value=0.02  Score=56.65  Aligned_cols=154  Identities=14%  Similarity=0.040  Sum_probs=81.9

Q ss_pred             eeeEEEecCCCe-EEEEeC-----CCcEEEEeCCC------C--eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCC
Q 048181           96 TFGLALHYATRQ-LYIADA-----YSGLLVVGPNG------R--LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASG  161 (310)
Q Consensus        96 P~Gla~d~~~g~-LyVad~-----~~gi~~id~~~------~--~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~  161 (310)
                      ..++++. ++|+ |+++..     ...|+.+|.++      +  ..+.+......      .--.++++++.||+.....
T Consensus       235 ~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~------~~~~~s~dg~~l~~~s~~~  307 (710)
T 2xdw_A          235 MGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG------EYDYVTNEGTVFTFKTNRH  307 (710)
T ss_dssp             EEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS------CEEEEEEETTEEEEEECTT
T ss_pred             EEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc------EEEEEeccCCEEEEEECCC
Confidence            4578886 5554 554432     23588888765      4  34444322211      1123555456787764321


Q ss_pred             ccCccceeEeeeecCCCceEEEEcCCCCe---EEEeecCCC--CCceeEEccCCCEEEEEecCCC--eEEEEEecCCCCC
Q 048181          162 VYDFRTIVKLNITNDSTGRLLSYNPRSSQ---VTVLLRNLT--GPAGVAISVDSSFLLVSEFTGN--RTLKYWLRGPRAN  234 (310)
Q Consensus       162 ~~~~~~~~~~~~~~~~~G~l~~~d~~~g~---~~~~~~~l~--~pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~~~~~g  234 (310)
                                    .++++|+.+|.+++.   .+.+.....  ...++++++++ .|+++....+  +|+++++..   |
T Consensus       308 --------------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~---g  369 (710)
T 2xdw_A          308 --------------SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLAT---G  369 (710)
T ss_dssp             --------------CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTT---C
T ss_pred             --------------CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCC---C
Confidence                          235789999987653   244443322  34678888554 5777665544  678887632   2


Q ss_pred             c-eeeecC-CCCCceeeeCCCCCC-cEEEEEecCCCCCCCCceeeEEECC
Q 048181          235 S-FDIINF-QAKPHNIKRNPGLLQ-TFWEAAIITRQPAGTPVPIGQRISA  281 (310)
Q Consensus       235 ~-~~~~~l-~g~Pdgl~~d~~~dG-~l~va~~~~~~~~~~~~~~v~~~~~  281 (310)
                      . .+...+ .+...++.+++  +| .++++..+...|     +.+.++|.
T Consensus       370 ~~~~~l~~~~~~v~~~~~s~--d~~~l~~~~ss~~~P-----~~i~~~d~  412 (710)
T 2xdw_A          370 ALLKIFPLEVGSVVGYSGQK--KDTEIFYQFTSFLSP-----GIIYHCDL  412 (710)
T ss_dssp             CEEEEECCCSSEEEEEECCT--TCSEEEEEEECSSCC-----CEEEEEET
T ss_pred             CEEEecCCCCceEEEEecCC--CCCEEEEEEeCCCCC-----CEEEEEEC
Confidence            2 111112 23344566666  66 456554443322     34555554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.50  E-value=0.022  Score=56.39  Aligned_cols=124  Identities=11%  Similarity=0.130  Sum_probs=68.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCC-CceeeEEEecCCCeEEEEeCCCcEEEEeC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPIC-RRTFGLALHYATRQLYIADAYSGLLVVGP  122 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~P~Gla~d~~~g~LyVad~~~gi~~id~  122 (310)
                      +|. +|+...+++|+.++...+.+.+..........       .. ...+ ....+++++  +++||+......|+.+|.
T Consensus        77 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~-------~~-~~~~~~~~~~~a~~--~~~v~v~~~dg~l~alD~  145 (677)
T 1kb0_A           77 DGI-MYVSASWSVVHAIDTRTGNRIWTYDPQIDRST-------GF-KGCCDVVNRGVALW--KGKVYVGAWDGRLIALDA  145 (677)
T ss_dssp             TTE-EEEECGGGCEEEEETTTTEEEEEECCCCCGGG-------GG-GSSSCSCCCCCEEE--TTEEEEECTTSEEEEEET
T ss_pred             CCE-EEEECCCCeEEEEECCCCcEEEEEcCCCCccc-------cc-cccccCCCCCceEE--CCEEEEEcCCCEEEEEEC
Confidence            455 55555678999999886666654321110000       00 0000 112367775  789999876667999999


Q ss_pred             CCCeEEEeeccC-CCc-cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          123 NGRLATQLATGA-EGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       123 ~~~~~~~~~~~~-~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ++|+...-.... +.. ........++.  ++.+|+......            ...+|.|+.+|..+|+..
T Consensus       146 ~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~------------~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          146 ATGKEVWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAE------------YGVRGYITAYDAETGERK  203 (677)
T ss_dssp             TTCCEEEEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTT------------TCCBCEEEEEETTTCCEE
T ss_pred             CCCCEEeeecCCcCcCcCcccccCcEEE--CCEEEEEecccc------------cCCCCEEEEEECCCCcEE
Confidence            888754222211 100 01111223444  489999765321            113578888998888764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.50  E-value=0.05  Score=53.44  Aligned_cols=157  Identities=11%  Similarity=0.015  Sum_probs=95.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC--e-EEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR--Q-LYI  110 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g--~-LyV  110 (310)
                      ....+++|.++|+.+++...++.|..++..+........         .      ..........+++. +++  . |+.
T Consensus       473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~---------~------~~~h~~~v~~~~~~-~~~~~~~l~s  536 (694)
T 3dm0_A          473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE---------G------GEGHRDWVSCVRFS-PNTLQPTIVS  536 (694)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS---------S------TTSCSSCEEEEEEC-SCSSSCEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc---------C------CCCCCCcEEEEEEe-CCCCcceEEE
Confidence            346688899998888888888888888765432211100         0      00112234577886 343  3 443


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      +.....|..+|..+++......   + +-...+.+++++ +|+++++-..                 +|.|..+|..+++
T Consensus       537 ~s~d~~v~vwd~~~~~~~~~~~---~-h~~~v~~v~~sp-dg~~l~sg~~-----------------Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLRSTLA---G-HTGYVSTVAVSP-DGSLCASGGK-----------------DGVVLLWDLAEGK  594 (694)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC---C-CSSCEEEEEECT-TSSEEEEEET-----------------TSBCEEEETTTTE
T ss_pred             EeCCCeEEEEECCCCcEEEEEc---C-CCCCEEEEEEeC-CCCEEEEEeC-----------------CCeEEEEECCCCc
Confidence            4444458888887765432221   1 223467899999 4887776432                 4677777877665


Q ss_pred             EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      .......-...+.++|+|++..|..+  ..+.|..+++..
T Consensus       595 ~~~~~~~~~~v~~~~~sp~~~~l~~~--~~~~i~iwd~~~  632 (694)
T 3dm0_A          595 KLYSLEANSVIHALCFSPNRYWLCAA--TEHGIKIWDLES  632 (694)
T ss_dssp             EEECCBCSSCEEEEEECSSSSEEEEE--ETTEEEEEETTT
T ss_pred             eEEEecCCCcEEEEEEcCCCcEEEEE--cCCCEEEEECCC
Confidence            44333333456889999998755443  345577777753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.48  E-value=0.032  Score=55.46  Aligned_cols=173  Identities=10%  Similarity=-0.022  Sum_probs=86.3

Q ss_pred             ceEEEccCCCEEEEEeCC---------CeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           37 ESIAFEPVGGAFYTGVAD---------GRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        37 egia~d~~G~l~~~d~~~---------g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      .+++|.|||+.++.....         +.++.++..++....                   +......-...++. ++|+
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-------------------l~~~~~~~~~~~~S-PdG~  124 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-------------------EERIPNNTQWVTWS-PVGH  124 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-------------------SSCCCTTEEEEEEC-SSTT
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-------------------cccCCCcceeeEEC-CCCC
Confidence            458899999855444332         456667766543210                   11111233456776 4554


Q ss_pred             -EEEEeCCCcEEEEeCCCCeEEEeeccCC------Ccc--------ccCccceEEeCCCCe-EEEE--cCCCc--cCc--
Q 048181          108 -LYIADAYSGLLVVGPNGRLATQLATGAE------GQA--------FHFLDGLDVDQGTGV-VYFT--DASGV--YDF--  165 (310)
Q Consensus       108 -LyVad~~~gi~~id~~~~~~~~~~~~~~------g~~--------~~~pndvavd~~~G~-lyvt--d~~~~--~~~--  165 (310)
                       |..+ ....|+..+.++++.+.+.....      |.+        +.....++.+|+ |+ |.++  |....  +..  
T Consensus       125 ~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          125 KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEE
T ss_pred             EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEe
Confidence             4333 23458888887776655432110      000        223346889995 65 5543  21110  000  


Q ss_pred             ---c----ceeEee---eec--CCCceEEEEcCCC---C---eEEEeec------CCCCCceeEEccCCCEEEEEec-CC
Q 048181          166 ---R----TIVKLN---ITN--DSTGRLLSYNPRS---S---QVTVLLR------NLTGPAGVAISVDSSFLLVSEF-TG  220 (310)
Q Consensus       166 ---~----~~~~~~---~~~--~~~G~l~~~d~~~---g---~~~~~~~------~l~~pnGIa~~~dg~~Lyv~d~-~~  220 (310)
                         .    .....+   ...  .+..+|+.+|.++   +   +...+..      .-..-..++|+|||+.+++... ..
T Consensus       203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~  282 (740)
T 4a5s_A          203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ  282 (740)
T ss_dssp             CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST
T ss_pred             ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC
Confidence               0    000000   001  1223688899887   6   4444332      2223457899999984443322 22


Q ss_pred             --CeEEEEEecCC
Q 048181          221 --NRTLKYWLRGP  231 (310)
Q Consensus       221 --~~I~~~~~~~~  231 (310)
                        .+|+.+++++.
T Consensus       283 ~~~~i~~~d~~tg  295 (740)
T 4a5s_A          283 NYSVMDICDYDES  295 (740)
T ss_dssp             TEEEEEEEEEETT
T ss_pred             CEEEEEEEECCCC
Confidence              36888888753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.47  E-value=0.053  Score=48.42  Aligned_cols=155  Identities=13%  Similarity=0.119  Sum_probs=88.9

Q ss_pred             CCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC--CCeEEE
Q 048181           34 FGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA--TRQLYI  110 (310)
Q Consensus        34 ~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~--~g~LyV  110 (310)
                      ....+++|.+ +++++++...++.|..++...+......                   ........+++.+.  ++.+++
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~  160 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-------------------NFEETVYSHHMSPVSTKHCLVA  160 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE-------------------ECSSCEEEEEECSSCSSCCEEE
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec-------------------cCCCceeeeEeecCCCCCcEEE
Confidence            4567899998 6778888888999999998754332111                   01123345666421  333444


Q ss_pred             -EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          111 -ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       111 -ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                       +.....|..+|..+++.......    .-...+.++++++ +. ++++-..                 +|.+..+|..+
T Consensus       161 ~~~~~~~v~~~d~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~ll~~~~~-----------------dg~i~i~d~~~  218 (408)
T 4a11_B          161 VGTRGPKVQLCDLKSGSCSHILQG----HRQEILAVSWSPR-YDYILATASA-----------------DSRVKLWDVRR  218 (408)
T ss_dssp             EEESSSSEEEEESSSSCCCEEECC----CCSCEEEEEECSS-CTTEEEEEET-----------------TSCEEEEETTC
T ss_pred             EEcCCCeEEEEeCCCcceeeeecC----CCCcEEEEEECCC-CCcEEEEEcC-----------------CCcEEEEECCC
Confidence             44444588888876543222111    1123568889985 55 5544322                 35566666543


Q ss_pred             Ce--EEEe---------------ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          189 SQ--VTVL---------------LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       189 g~--~~~~---------------~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      +.  ...+               ...-.....++++|++++|+ +-...+.|..+++..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL-TVGTDNRMRLWNSSN  276 (408)
T ss_dssp             SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTT
T ss_pred             CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE-EecCCCeEEEEECCC
Confidence            32  1111               11122457899999998655 445677888888764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.47  E-value=0.02  Score=56.84  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             CceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC----CCCceeeeCC
Q 048181          178 TGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ----AKPHNIKRNP  252 (310)
Q Consensus       178 ~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~----g~Pdgl~~d~  252 (310)
                      +|.|..+|+.+|++.-....-...++-.++..|..+|+. +..+.|+.|+...   |+..- ..++    +.|  ++...
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~t---G~~lw~~~~~~~~~~~p--~ty~~  527 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADT---GEKLWEQPAASGVMAAP--VTYSV  527 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCC--EEEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCC---CccceeeeCCCCcccCc--eEEEE
Confidence            388999999999764332211112444666677777776 6788999998753   33211 2222    334  66666


Q ss_pred             CCCCcEEEEEecC
Q 048181          253 GLLQTFWEAAIIT  265 (310)
Q Consensus       253 ~~dG~l~va~~~~  265 (310)
                        +|..||+...+
T Consensus       528 --~G~qyv~~~~G  538 (689)
T 1yiq_A          528 --DGEQYVTFMAG  538 (689)
T ss_dssp             --TTEEEEEEEEC
T ss_pred             --CCEEEEEEEec
Confidence              89999997654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.092  Score=50.83  Aligned_cols=168  Identities=11%  Similarity=0.038  Sum_probs=92.6

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCce---------EEeeeecCCC---Cccc--cCCCccccCCCCCCceeeE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGF---------TDFAFTTPTR---SKAV--CDGTTNLDLGPICRRTFGL   99 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~---------~~~~~~~~~~---~~~~--~~g~~~~~~~~~~~~P~Gl   99 (310)
                      .+-.+++|.|||.++.+...++.|.  ++....         ..+++. |.+   .+..  .++........ ......+
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~Fs-Pdg~~~~~~~~~~~~~~~~~~~~-~~~V~~v   91 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEF-PLEFENKLDFELAQQNGLLNSQP-VCYPRVC   91 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEE-CCCCCCTTTTSCCCSSCSSTTSC-SCCEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEEC-CCCCcceEEEEeCCCceEeecCC-CCcEEEE
Confidence            4678999999999888877788875  322100         011110 000   0000  01100111111 3345688


Q ss_pred             EEecCCCeEE-EEeCCCcEEEEeCCCCeEEEeeccCCCcc--ccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181          100 ALHYATRQLY-IADAYSGLLVVGPNGRLATQLATGAEGQA--FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus       100 a~d~~~g~Ly-Vad~~~gi~~id~~~~~~~~~~~~~~g~~--~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      ++. ++|..+ ++.....+..++.++ ....+.   ...+  -...+.++++|+ |++.++-.                 
T Consensus        92 awS-PdG~~LAs~s~dg~V~iwd~~~-~l~~l~---~~~~~~~~sv~svafSPD-G~~LAsgs-----------------  148 (588)
T 2j04_A           92 KPS-PIDDWMAVLSNNGNVSVFKDNK-MLTNLD---SKGNLSSRTYHCFEWNPI-ESSIVVGN-----------------  148 (588)
T ss_dssp             EEC-SSSSCEEEEETTSCEEEEETTE-EEEECC---CSSCSTTTCEEEEEECSS-SSCEEEEE-----------------
T ss_pred             EEC-CCCCEEEEEeCCCcEEEEeCCc-eeeecc---CCCccccccEEEEEEcCC-CCEEEEEc-----------------
Confidence            997 566644 455444577777554 322221   1110  123578999995 76655532                 


Q ss_pred             CCceEEEEcCCCCe--------EEEee----cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC
Q 048181          177 STGRLLSYNPRSSQ--------VTVLL----RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       177 ~~G~l~~~d~~~g~--------~~~~~----~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                      .+|.|..+|..++.        +..+.    +....-..++|+|||   +++-...+.|+.+++++.
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~  212 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSAS  212 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSS
T ss_pred             CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCC
Confidence            24777777877663        23332    112366899999998   456666888888888764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.45  E-value=0.018  Score=50.61  Aligned_cols=204  Identities=6%  Similarity=-0.105  Sum_probs=107.5

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE--ecCCCeEEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL--HYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~--d~~~g~LyVa  111 (310)
                      ....+++|.++++++++...++.|..++...+......                   ........+++  + .+++++++
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------------------~~~~~v~~~~~~~~-~~~~~l~~  146 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-------------------QHDAPVKTIHWIKA-PNYSCVMT  146 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------------------ECSSCEEEEEEEEC-SSCEEEEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-------------------cccCceEEEEEEeC-CCCCEEEE
Confidence            45678999999998888888999999998754322110                   11234557777  5 56665544


Q ss_pred             -eCCCcEEEEeCCCCeE-EEeeccCCC--ccccCccceEEeCCCCeEEEEcCCCccCc----------c-ce--------
Q 048181          112 -DAYSGLLVVGPNGRLA-TQLATGAEG--QAFHFLDGLDVDQGTGVVYFTDASGVYDF----------R-TI--------  168 (310)
Q Consensus       112 -d~~~gi~~id~~~~~~-~~~~~~~~g--~~~~~pndvavd~~~G~lyvtd~~~~~~~----------~-~~--------  168 (310)
                       .....|..+|..+++. ..+......  .....+.-+.... ++.+++-|.......          . ..        
T Consensus       147 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (368)
T 3mmy_A          147 GSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATA-ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ  225 (368)
T ss_dssp             EETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEG-GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTT
T ss_pred             ccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeC-CCcEEEEEeccccchhhhccccccCCCceEEEcccCC
Confidence             4444477788766542 222110000  0011111222222 344444443211000          0 00        


Q ss_pred             --eEeeeecCCCceEEEEcCCCCe----EEEeecCCC------------CCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          169 --VKLNITNDSTGRLLSYNPRSSQ----VTVLLRNLT------------GPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       169 --~~~~~~~~~~G~l~~~d~~~g~----~~~~~~~l~------------~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                        ...+.....+|.+..+|.....    ...+...-.            ..+.++++||+++| ++-...+.|..+++..
T Consensus       226 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          226 NKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             SCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTT
T ss_pred             CCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCC
Confidence              0003334456777777665431    111111111            36799999999855 4555678899888763


Q ss_pred             CCCCce-ee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          231 PRANSF-DI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       231 ~~~g~~-~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                         +.. .. ....+....+++.+  +|.+.++...
T Consensus       305 ---~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~s~  335 (368)
T 3mmy_A          305 ---RTKLKTSEQLDQPISACCFNH--NGNIFAYASS  335 (368)
T ss_dssp             ---TEEEEECCCCSSCEEEEEECT--TSSCEEEEEC
T ss_pred             ---CcEEEEecCCCCCceEEEECC--CCCeEEEEec
Confidence               222 11 22234467899999  9976665543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.05  Score=48.22  Aligned_cols=208  Identities=11%  Similarity=-0.013  Sum_probs=117.8

Q ss_pred             cCCCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEE
Q 048181           43 PVGGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVV  120 (310)
Q Consensus        43 ~~G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~i  120 (310)
                      .+++++++...++.|..++...+.  ..+...               ........|. ++-...++.+.+-+....+..+
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~---------------~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTP---------------NPRTGGEHPA-IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEEEE---------------CCCTTCCCCS-EEEECSTTEEEEEETTTEEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEecC---------------CceeeeeCCc-eEEecCCCeEEEEEccCceEEe
Confidence            356778888889999888866332  222110               0011222344 3332357778777777667777


Q ss_pred             eCCCCeE-EEeeccCCCccccCccceEEeC--CCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec-
Q 048181          121 GPNGRLA-TQLATGAEGQAFHFLDGLDVDQ--GTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR-  196 (310)
Q Consensus       121 d~~~~~~-~~~~~~~~g~~~~~pndvavd~--~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~-  196 (310)
                      +..+++. ..+... .   -.....++++|  + |+++++-.                 .+|.+..+|..+++...... 
T Consensus       110 ~~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~-~~~l~s~s-----------------~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A          110 DSKTNKVLREIEVD-S---ANEIIYMYGHNEVN-TEYFIWAD-----------------NRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             ETTTCCEEEEEECC-C---SSCEEEEECCC----CCEEEEEE-----------------TTCCEEEEESSSSCEEEEECC
T ss_pred             ecCCcceeEEeecC-C---CCCEEEEEcCCCCC-CCEEEEEe-----------------CCCcEEEEECCCCcEEEEEec
Confidence            7776652 222111 1   12356788888  6 66666533                 24678888877776543332 


Q ss_pred             C-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeec-CCCCCceeeeCCCCCCcEEEEEecC-------CC
Q 048181          197 N-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIIN-FQAKPHNIKRNPGLLQTFWEAAIIT-------RQ  267 (310)
Q Consensus       197 ~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~-l~g~Pdgl~~d~~~dG~l~va~~~~-------~~  267 (310)
                      . -...+.++|+|||+ ++++-...+.|..+++.....-...+.. -.+....+++.+  +|.+.++....       +.
T Consensus       168 ~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~--~g~~l~s~~~~~v~iwd~~~  244 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD--NGYWMVVECDQTVVCFDLRK  244 (343)
T ss_dssp             CSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT--TSSEEEEEESSBEEEEETTS
T ss_pred             CCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC--CCCEEEEEeCCeEEEEEcCC
Confidence            2 22468999999998 5566677889999998643211012211 223457788888  88766654432       11


Q ss_pred             CCC----CC-----ce---eeEEECCCCcEEEEEec
Q 048181          268 PAG----TP-----VP---IGQRISAFGAVLDTISF  291 (310)
Q Consensus       268 ~~~----~~-----~~---~v~~~~~~G~~~~~~~~  291 (310)
                      ...    ..     ..   ..+.++|+|+.+..-..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             STTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence            111    00     11   13788899887766443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.41  E-value=0.074  Score=48.59  Aligned_cols=190  Identities=9%  Similarity=0.009  Sum_probs=101.7

Q ss_pred             EEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           25 TKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        25 ~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      +.+.+.+.-..-.+++|.++|++++++..++.|..++...+......                  .........+..+  
T Consensus       139 ~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~------------------~~h~~~v~~~s~~--  198 (420)
T 4gga_A          139 QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM------------------TSHSARVGSLSWN--  198 (420)
T ss_dssp             EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEEE--
T ss_pred             EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE------------------eCCCCceEEEeeC--
Confidence            34455443334678999999998999999999999998754322111                  0111233345553  


Q ss_pred             CCeEEEE-eCCCcEEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          105 TRQLYIA-DAYSGLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       105 ~g~LyVa-d~~~gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                       +.++++ .....+...+......  ..+.    + .......+...++ |+..++-..                 +|.+
T Consensus       199 -~~~l~sgs~d~~i~~~d~~~~~~~~~~~~----~-h~~~~~~~~~~~~-g~~l~s~~~-----------------D~~v  254 (420)
T 4gga_A          199 -SYILSSGSRSGHIHHHDVRVAEHHVATLS----G-HSQEVCGLRWAPD-GRHLASGGN-----------------DNLV  254 (420)
T ss_dssp             -TTEEEEEETTSEEEEEETTSSSCEEEEEE----C-CSSCEEEEEECTT-SSEEEEEET-----------------TSCE
T ss_pred             -CCEEEEEeCCCceeEeeecccceeeEEec----c-cccceeeeeecCC-CCeeeeeec-----------------cccc
Confidence             444444 3333466666554322  2221    1 1223457778874 666555332                 3455


Q ss_pred             EEEcCCCCe-----EEEeecCCCCCceeEEccCCCEEEEEe--cCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCC
Q 048181          182 LSYNPRSSQ-----VTVLLRNLTGPAGVAISVDSSFLLVSE--FTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPG  253 (310)
Q Consensus       182 ~~~d~~~g~-----~~~~~~~l~~pnGIa~~~dg~~Lyv~d--~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~  253 (310)
                      ..++..+++     +......-..-..++++|++..++++-  +..+.|..+++..   +.... .......-.+.+.. 
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~~~~v~~~~~~~-  330 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAVDAHSQVCSILWSP-  330 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---TEEEEEEECSSCEEEEEEET-
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---cccceeeccccceeeeeecC-
Confidence            555544332     112222223346889999877666654  3457788777653   22211 22222345566666 


Q ss_pred             CCCcEEEEEe
Q 048181          254 LLQTFWEAAI  263 (310)
Q Consensus       254 ~dG~l~va~~  263 (310)
                       +++..++..
T Consensus       331 -~~~~lv~~s  339 (420)
T 4gga_A          331 -HYKELISGH  339 (420)
T ss_dssp             -TTTEEEEEE
T ss_pred             -CCCeEEEEE
Confidence             665555443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.40  E-value=0.0024  Score=63.02  Aligned_cols=137  Identities=12%  Similarity=0.064  Sum_probs=80.3

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEeC-
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIADA-  113 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad~-  113 (310)
                      +.+++|.++|.+++. ..++.|+.++.+++........          .   ..  .......+++. ++|+ |+++.. 
T Consensus        18 ~~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~----------~---~~--~~~~~~~~~~S-pDg~~la~~~~~   80 (719)
T 1z68_A           18 TFFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSN----------R---TM--KSVNASNYGLS-PDRQFVYLESDY   80 (719)
T ss_dssp             CCCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECH----------H---HH--HTTTCSEEEEC-TTSSEEEEEEEE
T ss_pred             CCccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEcc----------c---cc--cccceeeEEEC-CCCCeEEEEecC
Confidence            447899999974444 4588999999876532211100          0   00  00013468886 5665 444432 


Q ss_pred             --------CCcEEEEeCCCCeE---EEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceE
Q 048181          114 --------YSGLLVVGPNGRLA---TQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       114 --------~~gi~~id~~~~~~---~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                              ...|+.+|.++++.   ..+    .    ...+.++++|+ |+ |.++.                   ++.|
T Consensus        81 ~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~----~~~~~~~~SPD-G~~la~~~-------------------~~~i  132 (719)
T 1z68_A           81 SKLWRYSYTATYYIYDLSNGEFVRGNEL----P----RPIQYLCWSPV-GSKLAYVY-------------------QNNI  132 (719)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCC----C----SSBCCEEECSS-TTCEEEEE-------------------TTEE
T ss_pred             ceeEEeecceEEEEEECCCCccccceec----C----cccccceECCC-CCEEEEEE-------------------CCeE
Confidence                    13488899888765   222    1    23567899995 64 44432                   2467


Q ss_pred             EEEcCCCCeEEEeecCC-------------------CCCceeEEccCCCEEEEEe
Q 048181          182 LSYNPRSSQVTVLLRNL-------------------TGPAGVAISVDSSFLLVSE  217 (310)
Q Consensus       182 ~~~d~~~g~~~~~~~~l-------------------~~pnGIa~~~dg~~Lyv~d  217 (310)
                      +.++..+++...+...-                   ....+++|||||++|+++.
T Consensus       133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence            77777666554433111                   1225899999999887764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.39  E-value=0.0094  Score=58.70  Aligned_cols=169  Identities=9%  Similarity=-0.027  Sum_probs=85.3

Q ss_pred             cceEEEccCCCEEEEEeC---------CCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC
Q 048181           36 GESIAFEPVGGAFYTGVA---------DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR  106 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~---------~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g  106 (310)
                      ..+++|.|||+.+.....         ++.|+.++.+++...-.                .   ........+++. ++|
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~----------------~---~l~~~~~~~~~S-PDG  121 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG----------------N---ELPRPIQYLCWS-PVG  121 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS----------------S---CCCSSBCCEEEC-SST
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc----------------e---ecCcccccceEC-CCC
Confidence            568999999985544332         46788888775432000                0   011234567886 556


Q ss_pred             e-EEEEeCCCcEEEEeCCCCeEEEeeccCCCcc--------------ccCccceEEeCCCCe-EEEEcCCCccCccce--
Q 048181          107 Q-LYIADAYSGLLVVGPNGRLATQLATGAEGQA--------------FHFLDGLDVDQGTGV-VYFTDASGVYDFRTI--  168 (310)
Q Consensus       107 ~-LyVad~~~gi~~id~~~~~~~~~~~~~~g~~--------------~~~pndvavd~~~G~-lyvtd~~~~~~~~~~--  168 (310)
                      + |..+ ....|+.++.++++...+........              +.....++++|+ |+ |+++..... ....+  
T Consensus       122 ~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~-~~~~~~~  198 (719)
T 1z68_A          122 SKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDT-DIPVIAY  198 (719)
T ss_dssp             TCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECT-TSCEEEE
T ss_pred             CEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCC-CCceEEe
Confidence            4 4444 34468888888776655432111000              122358999995 64 444321100 00000  


Q ss_pred             ----------eEeee-----ecCCCceEEEEcCCCCeEE---Eee------cCCCCCceeEEccCCCEEEEEec-CC--C
Q 048181          169 ----------VKLNI-----TNDSTGRLLSYNPRSSQVT---VLL------RNLTGPAGVAISVDSSFLLVSEF-TG--N  221 (310)
Q Consensus       169 ----------~~~~~-----~~~~~G~l~~~d~~~g~~~---~~~------~~l~~pnGIa~~~dg~~Lyv~d~-~~--~  221 (310)
                                ...+.     ...+...|+.+|.++++..   .+.      ..-.....++|+||++.++.... ..  .
T Consensus       199 ~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~  278 (719)
T 1z68_A          199 SYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVS  278 (719)
T ss_dssp             EECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEE
T ss_pred             eccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeE
Confidence                      00000     0012237888888766531   111      11123468999999864443222 22  3


Q ss_pred             eEEEEE
Q 048181          222 RTLKYW  227 (310)
Q Consensus       222 ~I~~~~  227 (310)
                      +|+.++
T Consensus       279 ~l~~~d  284 (719)
T 1z68_A          279 VLSICD  284 (719)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            588888

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.39  E-value=0.059  Score=52.30  Aligned_cols=83  Identities=7%  Similarity=-0.009  Sum_probs=47.7

Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCC--CceeeeCCC
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAK--PHNIKRNPG  253 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~--Pdgl~~d~~  253 (310)
                      ..|.|+.+|+.+|++.--.......++-.+...+..+|+. +..+.|+.|+...   |+..- ..++..  ..-+.... 
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-~~dg~l~A~D~~t---G~~lW~~~~~~g~~a~P~~y~~-  538 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG-TGDGYFKAFDAKS---GKELWKFQTGSGIVSPPITWEQ-  538 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCCEEEEE-
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEE-CCCCcEEEEECCC---CCEEEEecCCCCcccCceEEEE-
Confidence            4689999999998764222211112333333345567775 4678888888642   33211 222211  11256567 


Q ss_pred             CCCcEEEEEecC
Q 048181          254 LLQTFWEAAIIT  265 (310)
Q Consensus       254 ~dG~l~va~~~~  265 (310)
                       +|..||+...+
T Consensus       539 -~G~qYv~~~~G  549 (582)
T 1flg_A          539 -DGEQYLGVTVG  549 (582)
T ss_dssp             -TTEEEEEEEEC
T ss_pred             -CCEEEEEEEcc
Confidence             89999998765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.042  Score=56.20  Aligned_cols=155  Identities=6%  Similarity=-0.061  Sum_probs=94.7

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      .-.+++|.+ |.++++...++.|..++...+......                   ........+++++....|+++...
T Consensus        60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~-------------------~~~~~V~~v~~sp~g~~l~sgs~d  119 (902)
T 2oaj_A           60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV-------------------FVPGKITSIDTDASLDWMLIGLQN  119 (902)
T ss_dssp             CEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE-------------------ECSSCEEEEECCTTCSEEEEEETT
T ss_pred             CEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE-------------------cCCCCEEEEEECCCCCEEEEEcCC
Confidence            457899999 787777778899999987643221110                   011235678887434455555555


Q ss_pred             CcEEEEeCCCCeEEEee--------ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          115 SGLLVVGPNGRLATQLA--------TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~--------~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      ..|..+|.++++...+.        ....+ +....+.++++|+++.++++-.                 .+|.+ .+|.
T Consensus       120 g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g~-----------------~dg~v-lWd~  180 (902)
T 2oaj_A          120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAA-RLSPIVSIQWNPRDIGTVLISY-----------------EYVTL-TYSL  180 (902)
T ss_dssp             SCEEEEETTTTEEEEEEECCHHHHHTCSSS-CCCCCCEEEEETTEEEEEEEEC-----------------SSCEE-EEET
T ss_pred             CcEEEEECCCCccccceecccccccccccc-CCCCeEEEEEccCCCCEEEEEe-----------------CCCcE-EEEC
Confidence            55888898877653221        11111 2345678999985334444432                 24667 7777


Q ss_pred             CCCeEEEeecCC-------------------CCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          187 RSSQVTVLLRNL-------------------TGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       187 ~~g~~~~~~~~l-------------------~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      .+++.......-                   ...+.++|+|||+ ++++-...+.|..+++.
T Consensus       181 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          181 VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETT
T ss_pred             CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECC
Confidence            666543322211                   2357999999998 55666778888888875

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.30  E-value=0.0038  Score=52.98  Aligned_cols=165  Identities=15%  Similarity=0.072  Sum_probs=88.5

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      ..+++--+ .+.....++++|+|.||-+  .+|.++++++... -..+.... +  ...+.|         -..-..+.+
T Consensus        31 ~a~~iG~~-gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~-t--~IG~~G---------w~~F~a~~f   95 (236)
T 1tl2_A           31 RATLIGKG-GWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA-K--KIGNGG---------WNQFQFLFF   95 (236)
T ss_dssp             HSEEEESS-SCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC-E--EEECSC---------GGGCSEEEE
T ss_pred             hccccCcc-ccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc-c--Eecccc---------cccceEEEE
Confidence            34445443 2567789999999998877  7899999998531 11111000 0  000000         001235788


Q ss_pred             ecCCCeEEEEeCCCcEEEEeCCC-CeEEEeec--cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          102 HYATRQLYIADAYSGLLVVGPNG-RLATQLAT--GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       102 d~~~g~LyVad~~~gi~~id~~~-~~~~~~~~--~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      | .+|.||+. ....|+++++-+ +....+..  .+.........-|.++| +|.||..+ .                  
T Consensus        96 D-~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~-d------------------  153 (236)
T 1tl2_A           96 D-PNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH-G------------------  153 (236)
T ss_dssp             C-TTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE-T------------------
T ss_pred             C-CCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe-C------------------
Confidence            8 89999988 333499998733 11111111  01111122336789999 59999765 3                  


Q ss_pred             ceEEEEcCCCC-------eEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          179 GRLLSYNPRSS-------QVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       179 G~l~~~d~~~g-------~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                      |++++-.+-++       ..+.+. ++...=.=+.++++|. ||.++  ++++++..
T Consensus       154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g~~Y~~~  207 (236)
T 1tl2_A          154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYEDY  207 (236)
T ss_dssp             TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEEES
T ss_pred             CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc-EEEEe--CCeEEecC
Confidence            33444322111       111111 1111111266999986 77777  78888874

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.30  E-value=0.0046  Score=60.15  Aligned_cols=122  Identities=16%  Similarity=0.281  Sum_probs=74.8

Q ss_pred             CCCCcceEEEcc-CCCEEEEEeC---------------------CCeEEEEECCCc--------eEEeeeecCCCC-c-c
Q 048181           32 KAFGGESIAFEP-VGGAFYTGVA---------------------DGRILKYQAPDG--------FTDFAFTTPTRS-K-A   79 (310)
Q Consensus        32 ~~~~Pegia~d~-~G~l~~~d~~---------------------~g~I~r~~~~g~--------~~~~~~~~~~~~-~-~   79 (310)
                      .+.+||++++++ +|.+|++-..                     .|.|+|+.+++.        +..+...+.... . .
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            567999999997 6888888642                     378999986522        222222111100 0 0


Q ss_pred             ccCCCccccCCCCCCceeeEEEecCCCeEEEEe-CC------------CcEEEEeCCCCeEEEeeccCCCccccCccceE
Q 048181           80 VCDGTTNLDLGPICRRTFGLALHYATRQLYIAD-AY------------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLD  146 (310)
Q Consensus        80 ~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad-~~------------~gi~~id~~~~~~~~~~~~~~g~~~~~pndva  146 (310)
                      ...+.........+..|-.|+++ +.|+|||+. ..            +.++.+++.++++..++....+..   .-|++
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd-~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE---~TG~~  537 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFD-KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCE---VTGIS  537 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEEC-TTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCE---EEEEE
T ss_pred             ccccccccCCCCCccCCcceEEC-CCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCcc---CcCee
Confidence            00000011112346789999998 789999974 31            237888998888888876544433   35889


Q ss_pred             EeCCCCeEEEE
Q 048181          147 VDQGTGVVYFT  157 (310)
Q Consensus       147 vd~~~G~lyvt  157 (310)
                      ++|+...|||.
T Consensus       538 fspDg~tlfvn  548 (592)
T 3zwu_A          538 FSPDQKTLFVG  548 (592)
T ss_dssp             ECTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99964466665

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.28  E-value=0.033  Score=55.04  Aligned_cols=124  Identities=15%  Similarity=0.226  Sum_probs=68.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCC-CceeeEEEecCCCeEEEEeCCCcEEEEeC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPIC-RRTFGLALHYATRQLYIADAYSGLLVVGP  122 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~P~Gla~d~~~g~LyVad~~~gi~~id~  122 (310)
                      +|. +|+...+++|+.++...+.+.+.........        ......+ ....+++++  +++||+......|+.+|.
T Consensus        66 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~v~v~~~dg~l~alD~  134 (668)
T 1kv9_A           66 DGV-IYTSMSWSRVIAVDAASGKELWRYDPEVAKV--------KARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDA  134 (668)
T ss_dssp             TTE-EEEEEGGGEEEEEETTTCCEEEEECCCCCGG--------GGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEET
T ss_pred             CCE-EEEECCCCeEEEEECCCChhceEECCCCCcc--------ccccccccCCccceEEE--CCEEEEEcCCCEEEEEEC
Confidence            445 5555668899999987655555432111000        0000011 113466775  789999876666999999


Q ss_pred             CCCeEEEeeccCCCc-cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          123 NGRLATQLATGAEGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       123 ~~~~~~~~~~~~~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ++|+...-....+.. ........++.  +|.+|+......            ...+|.|+.+|..+|+..
T Consensus       135 ~tG~~~W~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~------------~~~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          135 KTGKAIWSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAE------------YGVRGFVSAYDADTGKLA  191 (668)
T ss_dssp             TTCCEEEEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTT------------TCCBCEEEEEETTTCCEE
T ss_pred             CCCCEeeeeccCCCCCcceecCCCEEE--CCEEEEeCCCCC------------cCCCCEEEEEECCCCcEE
Confidence            888754222211100 01111223444  488998764321            123578889998888764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.28  E-value=0.078  Score=46.13  Aligned_cols=142  Identities=10%  Similarity=0.018  Sum_probs=80.8

Q ss_pred             eeeEEEecC-CCeEEEEe-CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181           96 TFGLALHYA-TRQLYIAD-AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        96 P~Gla~d~~-~g~LyVad-~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      ...+++... ...++++. ....|..+|..+++......   + .-...+.++++|+ |+++++-.              
T Consensus       174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~-h~~~v~~~~~s~~-~~~l~s~s--------------  234 (340)
T 4aow_A          174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---G-HTGYLNTVTVSPD-GSLCASGG--------------  234 (340)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC---C-CSSCEEEEEECTT-SSEEEEEE--------------
T ss_pred             ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec---C-CCCcEEEEEECCC-CCEEEEEe--------------
Confidence            345666422 23444443 33347778887765433221   1 1234578999994 87776643              


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---------ecCCCC
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---------INFQAK  244 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---------~~l~g~  244 (310)
                         .+|.+..+|..+.+.......-...+.++++|++.. + +-...+.|..+++.+... ..++         ..-+..
T Consensus       235 ---~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~-~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          235 ---KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW-L-CAATGPSIKIWDLEGKII-VDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             ---TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSE-E-EEEETTEEEEEETTTTEE-EEEECCC-------CCCCC
T ss_pred             ---CCCeEEEEEeccCceeeeecCCceEEeeecCCCCce-e-eccCCCEEEEEECCCCeE-EEeccccceeeeccCCCCC
Confidence               246788888776655444444456688999998863 3 333567888888764210 0011         011223


Q ss_pred             CceeeeCCCCCCcEEEEEec
Q 048181          245 PHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       245 Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ...+++++  +|++.++...
T Consensus       309 v~~l~~s~--dg~~l~sgs~  326 (340)
T 4aow_A          309 CTSLAWSA--DGQTLFAGYT  326 (340)
T ss_dssp             EEEEEECT--TSSEEEEEET
T ss_pred             EEEEEECC--CCCEEEEEeC
Confidence            45678888  8877666443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.24  E-value=0.022  Score=56.65  Aligned_cols=209  Identities=14%  Similarity=0.092  Sum_probs=109.8

Q ss_pred             cceEEEccCCCEE-EEEeCCC----eEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           36 GESIAFEPVGGAF-YTGVADG----RILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        36 Pegia~d~~G~l~-~~d~~~g----~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      -.+++|.|||+.+ |+....|    .|+.++.+++.. .....                   . ..-.++++.++ ..||
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-------------------~-~~~~~~~wspD-~~l~  223 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-------------------W-VKFSGLAWLGN-DALL  223 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE-------------------E-EESCCCEESTT-SEEE
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC-------------------C-ceeccEEEECC-CEEE
Confidence            3468999999744 4433333    588888775432 11000                   0 00124667544 6666


Q ss_pred             EEeCC--------------CcEEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEee
Q 048181          110 IADAY--------------SGLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus       110 Vad~~--------------~gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~  172 (310)
                      ++...              ..|++.+..++..  ..+....+. + .+..++.++++ |+ |+++-...           
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~-~-~~~~~~~~SpD-G~~l~~~~~~~-----------  289 (741)
T 1yr2_A          224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL-P-KRGHGASVSSD-GRWVVITSSEG-----------  289 (741)
T ss_dssp             EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC-T-TCEEEEEECTT-SCEEEEEEECT-----------
T ss_pred             EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC-C-eEEEEEEECCC-CCEEEEEEEcc-----------
Confidence            65322              1377788765542  222222111 1 12357889995 74 54443211           


Q ss_pred             eecCCCceEEEEcCCCC--e-EEEeecCCCCCceeEEccCCCEEEEEec---CCCeEEEEEecCCCCCcee-e-ecCCCC
Q 048181          173 ITNDSTGRLLSYNPRSS--Q-VTVLLRNLTGPAGVAISVDSSFLLVSEF---TGNRTLKYWLRGPRANSFD-I-INFQAK  244 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g--~-~~~~~~~l~~pnGIa~~~dg~~Lyv~d~---~~~~I~~~~~~~~~~g~~~-~-~~l~g~  244 (310)
                        ...+..|+.+|.+++  + .+.+......-... +++||+.||+...   .+.+|+++++++.. +..+ + ......
T Consensus       290 --~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~  365 (741)
T 1yr2_A          290 --TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDN  365 (741)
T ss_dssp             --TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSE
T ss_pred             --CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCe
Confidence              012346888887665  4 55555443333333 4588998887643   25689999987532 2222 2 111122


Q ss_pred             CceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecC
Q 048181          245 PHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFE  292 (310)
Q Consensus       245 Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p  292 (310)
                      ..++.++.   +.++++.....      ...+.+++.+|+....+..|
T Consensus       366 l~~~~~~~---~~lv~~~~~dg------~~~l~~~~~~g~~~~~l~~~  404 (741)
T 1yr2_A          366 LESVGIAG---NRLFASYIHDA------KSQVLAFDLDGKPAGAVSLP  404 (741)
T ss_dssp             EEEEEEEB---TEEEEEEEETT------EEEEEEEETTSCEEEECBCS
T ss_pred             EEEEEEEC---CEEEEEEEECC------EEEEEEEeCCCCceeeccCC
Confidence            34556654   45655544332      24677777778777777665

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.20  E-value=0.094  Score=45.45  Aligned_cols=161  Identities=9%  Similarity=0.010  Sum_probs=89.0

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~LyVa  111 (310)
                      ..-.+++|+++|+++++...++.|.-++.++. ...+..                 +..-...-..+++.++ +|+++++
T Consensus        10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~-----------------l~gH~~~V~~v~~s~~~~g~~l~s   72 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDT-----------------LTGHEGPVWRVDWAHPKFGTILAS   72 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEE-----------------ECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEE-----------------EccccCCeEEEEecCCCcCCEEEE
Confidence            34568999999998888888999988886532 111100                 0111223457887422 3666554


Q ss_pred             -eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCC-CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          112 -DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGT-GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       112 -d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~-G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                       .....|...|.++++...+.. ..+ +-...+.++++|+. |.++++-.                 .+|.+..+|..++
T Consensus        73 ~s~D~~v~iWd~~~~~~~~~~~-~~~-h~~~v~~v~~~p~~~g~~l~s~s-----------------~d~~v~~wd~~~~  133 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGRWSQIAV-HAV-HSASVNSVQWAPHEYGPMLLVAS-----------------SDGKVSVVEFKEN  133 (297)
T ss_dssp             EETTTEEEEEEBSSSCBCCCEE-ECC-CSSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEEBCSS
T ss_pred             EcCCCEEEEEEcCCCceEEEEE-eec-CCCceeEEEeCcCCCCcEEEEEE-----------------CCCcEEEEEecCC
Confidence             334447777776653211111 111 11245788888731 55555432                 2356666665433


Q ss_pred             e---EEEeecCCCCCceeEEccCC------------CEEEEEecCCCeEEEEEecC
Q 048181          190 Q---VTVLLRNLTGPAGVAISVDS------------SFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       190 ~---~~~~~~~l~~pnGIa~~~dg------------~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      .   ...+...-..-+.++|+|++            ..++++-...+.|..+++..
T Consensus       134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~  189 (297)
T 2pm7_B          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (297)
T ss_dssp             SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred             CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence            1   12222222345788888863            12566767778888888764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.17  E-value=0.14  Score=46.96  Aligned_cols=197  Identities=13%  Similarity=0.017  Sum_probs=107.9

Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcE
Q 048181           38 SIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGL  117 (310)
Q Consensus        38 gia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi  117 (310)
                      .+.+  +++++++...++.|..++...+......                  .........+++. +++.|+.+.....|
T Consensus       127 ~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~------------------~~h~~~V~~l~~~-~~~~l~s~s~dg~i  185 (464)
T 3v7d_B          127 CLQF--EDNYVITGADDKMIRVYDSINKKFLLQL------------------SGHDGGVWALKYA-HGGILVSGSTDRTV  185 (464)
T ss_dssp             EEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEEC-STTEEEEEETTSCE
T ss_pred             EEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE------------------eCCCcCEEEEEEc-CCCEEEEEeCCCCE
Confidence            3444  5677888888999999997754322111                  1122345678885 56655555555558


Q ss_pred             EEEeCCCCeEEEeeccCCCccccCccceEEeCC-CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe------
Q 048181          118 LVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG-TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ------  190 (310)
Q Consensus       118 ~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~-~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~------  190 (310)
                      ..+|.++++.......    .-...+.+++.+. ++..+++-..                 +|.+..+|..++.      
T Consensus       186 ~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~  244 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEG----HNSTVRCLDIVEYKNIKYIVTGSR-----------------DNTLHVWKLPKESSVPDHG  244 (464)
T ss_dssp             EEEETTTTEEEEEECC----CSSCEEEEEEEESSSCEEEEEEET-----------------TSCEEEEECCCCCCC----
T ss_pred             EEEECCCCcEEEEECC----CCCccEEEEEecCCCCCEEEEEcC-----------------CCcEEEeeCCCCccccccc
Confidence            8889887754322221    1123455666631 3555554332                 2445445443322      


Q ss_pred             ------------------EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee-e-ecCCCCCceeee
Q 048181          191 ------------------VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD-I-INFQAKPHNIKR  250 (310)
Q Consensus       191 ------------------~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~-~-~~l~g~Pdgl~~  250 (310)
                                        +.....  ....-.+++++++.| ++-...+.|..+++..   +... . ..-......+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l-~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~  318 (464)
T 3v7d_B          245 EEHDYPLVFHTPEENPYFVGVLRG--HMASVRTVSGHGNIV-VSGSYDNTLIVWDVAQ---MKCLYILSGHTDRIYSTIY  318 (464)
T ss_dssp             --CCSSEEESCGGGCTTEEEEECC--CSSCEEEEEEETTEE-EEEETTSCEEEEETTT---TEEEEEECCCSSCEEEEEE
T ss_pred             ccCCcceEeeccCCCeEEEEEccC--ccceEEEEcCCCCEE-EEEeCCCeEEEEECCC---CcEEEEecCCCCCEEEEEE
Confidence                              111111  112233557778754 4555677888888753   2221 1 222234567889


Q ss_pred             CCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          251 NPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       251 d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                      ++  +|+..++....+        .+..+|. +|+.+..+...
T Consensus       319 ~~--~~~~l~sg~~dg--------~i~vwd~~~~~~~~~~~~h  351 (464)
T 3v7d_B          319 DH--ERKRCISASMDT--------TIRIWDLENGELMYTLQGH  351 (464)
T ss_dssp             ET--TTTEEEEEETTS--------CEEEEETTTTEEEEEECCC
T ss_pred             cC--CCCEEEEEeCCC--------cEEEEECCCCcEEEEEeCC
Confidence            98  887666655432        5666774 57776666544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.16  E-value=0.021  Score=56.29  Aligned_cols=210  Identities=10%  Similarity=-0.016  Sum_probs=110.8

Q ss_pred             cceEEEccCCCEE-EEEeCC----CeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EE
Q 048181           36 GESIAFEPVGGAF-YTGVAD----GRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LY  109 (310)
Q Consensus        36 Pegia~d~~G~l~-~~d~~~----g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-Ly  109 (310)
                      -.+++|.|||+.+ |+....    ..|+.++.+++.....                ... ... ...++++. ++|+ |+
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~----------------~~~-~~~-~~~~~~ws-pDg~~l~  183 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV----------------DVI-EGG-KYATPKWT-PDSKGFY  183 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS----------------CCB-SCC-TTCCCEEC-TTSSEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC----------------ccc-Ccc-cccceEEe-cCCCEEE
Confidence            4578899999743 343322    4688888775432100                000 000 11467886 5554 55


Q ss_pred             EEeCCC-------------cEEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeee
Q 048181          110 IADAYS-------------GLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus       110 Vad~~~-------------gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~  173 (310)
                      .+....             .|++++..++..  ..+....+. + .+..+++++++ |+ |+++-...            
T Consensus       184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~-~-~~~~~~~~SpD-G~~l~~~~~~~------------  248 (695)
T 2bkl_A          184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD-P-TTFLQSDLSRD-GKYLFVYILRG------------  248 (695)
T ss_dssp             EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC-T-TCEEEEEECTT-SCCEEEEEEET------------
T ss_pred             EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC-C-EEEEEEEECCC-CCEEEEEEeCC------------
Confidence            554322             288888877642  222222111 1 23347889995 64 44432111            


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec---CCCeEEEEEecCCCCCc-eee-ecCC-CCCce
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF---TGNRTLKYWLRGPRANS-FDI-INFQ-AKPHN  247 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~---~~~~I~~~~~~~~~~g~-~~~-~~l~-g~Pdg  247 (310)
                        .....|+.++..+++.+.+...........+ ++|+ +|+...   .+.+|+++++++..... ..+ ..-+ ....+
T Consensus       249 --~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~  324 (695)
T 2bkl_A          249 --WSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS  324 (695)
T ss_dssp             --TTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE
T ss_pred             --CCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE
Confidence              0123677777666666666655444455555 6787 777644   35789999886532111 222 1111 12345


Q ss_pred             eeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecC
Q 048181          248 IKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFE  292 (310)
Q Consensus       248 l~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p  292 (310)
                      ++++.   +.++++.....      ...+.+++.+|+....+..|
T Consensus       325 ~~~~~---~~lv~~~~~dg------~~~l~~~~~~g~~~~~l~~~  360 (695)
T 2bkl_A          325 VSIVG---GHLSLEYLKDA------TSEVRVATLKGKPVRTVQLP  360 (695)
T ss_dssp             EEEET---TEEEEEEEETT------EEEEEEEETTCCEEEECCCS
T ss_pred             EEEEC---CEEEEEEEECC------EEEEEEEeCCCCeeEEecCC
Confidence            66654   56666544332      24567777777766666665

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.15  E-value=0.011  Score=52.25  Aligned_cols=115  Identities=7%  Similarity=0.001  Sum_probs=70.9

Q ss_pred             cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181          116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL  195 (310)
Q Consensus       116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~  195 (310)
                      .|+.++.++++.+.+         .....++++|++..|+++....             ......|+.++.++++...+.
T Consensus        44 ~l~~~d~~~~~~~~l---------~~~~~~~~SpDg~~la~~~~~~-------------~~~~~~l~~~~~~~g~~~~l~  101 (347)
T 2gop_A           44 TIVIENLKNNARRFI---------ENATMPRISPDGKKIAFMRANE-------------EKKVSEIWVADLETLSSKKIL  101 (347)
T ss_dssp             EEEEEETTTCCEEEE---------ESCEEEEECTTSSEEEEEEEET-------------TTTEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEeCCCCceEEc---------ccCCCeEECCCCCEEEEEEecc-------------CCCcceEEEEECCCCceEEEE
Confidence            377788877765544         1245688999533465543210             012246899998877766655


Q ss_pred             cCCCCCceeEEccCCCEEEEEecC--------------------------CCeEEEEEecCCCCCce-ee-ecCCCCCce
Q 048181          196 RNLTGPAGVAISVDSSFLLVSEFT--------------------------GNRTLKYWLRGPRANSF-DI-INFQAKPHN  247 (310)
Q Consensus       196 ~~l~~pnGIa~~~dg~~Lyv~d~~--------------------------~~~I~~~~~~~~~~g~~-~~-~~l~g~Pdg  247 (310)
                      ..-. ...++|+|||+.|+++...                          ..+|+++++.+   +.. .. .. + ....
T Consensus       102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~---~~~~~~l~~-~-~~~~  175 (347)
T 2gop_A          102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES---EEVIEEFEK-P-RFSS  175 (347)
T ss_dssp             EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT---TEEEEEEEE-E-TTCE
T ss_pred             cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC---CeEEeeecC-C-Cccc
Confidence            4323 7899999999988887532                          35688888764   333 22 22 3 4566


Q ss_pred             eeeCCCCCCcEEEE
Q 048181          248 IKRNPGLLQTFWEA  261 (310)
Q Consensus       248 l~~d~~~dG~l~va  261 (310)
                      +++.+  || ++++
T Consensus       176 ~~~sp--dg-~~~~  186 (347)
T 2gop_A          176 GIWHR--DK-IVVN  186 (347)
T ss_dssp             EEEET--TE-EEEE
T ss_pred             ccCCC--Ce-EEEE
Confidence            77777  77 4443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.15  E-value=0.075  Score=51.83  Aligned_cols=80  Identities=10%  Similarity=0.040  Sum_probs=46.9

Q ss_pred             CCceEEEEcCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce----ee-ecCCCCCceeee
Q 048181          177 STGRLLSYNPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF----DI-INFQAKPHNIKR  250 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~----~~-~~l~g~Pdgl~~  250 (310)
                      ..|.|+.+|+.+|++.-... ....-.|. +...|..+|+. +..+.|+.|+...   |+.    ++ ....+.|  +..
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~-~~tagg~vf~g-t~dg~l~A~D~~t---G~~lW~~~l~~g~~~~P--~~y  523 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFAVWGGT-MATAGDLVFYG-TLDGYLKARDSDT---GDLLWKFKIPSGAIGYP--MTY  523 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCC--EEE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCCccCcc-eEecCCEEEEE-CCCCeEEEEECCC---CCEEEEeeCCCCcEecc--EEE
Confidence            45899999999987643221 22222242 33345567775 5678888888653   332    11 2222334  555


Q ss_pred             CCCCCCcEEEEEecC
Q 048181          251 NPGLLQTFWEAAIIT  265 (310)
Q Consensus       251 d~~~dG~l~va~~~~  265 (310)
                      ..  +|.+||+...+
T Consensus       524 ~~--~G~qyv~~~~G  536 (599)
T 1w6s_A          524 TH--KGTQYVAIYYG  536 (599)
T ss_dssp             EE--TTEEEEEEEEC
T ss_pred             Ee--CCEEEEEEEcc
Confidence            56  89999987665

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.14  E-value=0.13  Score=45.98  Aligned_cols=85  Identities=8%  Similarity=-0.021  Sum_probs=54.3

Q ss_pred             cCCCceEEEEcCCCCe-----------------EEEeecCCCCCceeEEccCCCEEEEEecCCCe-EEEEEecCCCCCce
Q 048181          175 NDSTGRLLSYNPRSSQ-----------------VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNR-TLKYWLRGPRANSF  236 (310)
Q Consensus       175 ~~~~G~l~~~d~~~g~-----------------~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~-I~~~~~~~~~~g~~  236 (310)
                      ...+|.|..+|..+++                 +..+...-...+.++|+|||+ ++++-+..+. |..+++..   +..
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~---~~~  230 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTED---GVL  230 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTT---CCE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCC---CcE
Confidence            4567888888887654                 333333334568999999998 5556667776 88887753   222


Q ss_pred             --eee-c-CCCCCceeeeCCCCCCcEEEEEecC
Q 048181          237 --DII-N-FQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       237 --~~~-~-l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                        .+. + -.+....+++++  +|++.++....
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~--~~~~l~s~s~d  261 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWST--DGSKLAVVSDK  261 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECT--TSCEEEEEETT
T ss_pred             EEEEEcCCCCCcEEEEEECC--CCCEEEEEECC
Confidence              112 2 334457789999  99877766543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.049  Score=54.34  Aligned_cols=195  Identities=11%  Similarity=0.001  Sum_probs=107.2

Q ss_pred             CCCCCCcceEEEccC--CCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC-
Q 048181           30 PPKAFGGESIAFEPV--GGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT-  105 (310)
Q Consensus        30 ~~~~~~Pegia~d~~--G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~-  105 (310)
                      .+.-....+++|.++  |+++++...+|.|..++..++. .....                 ..........+++. ++ 
T Consensus        50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~-----------------~~~h~~~V~~v~~s-p~~  111 (753)
T 3jro_A           50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV-----------------HAVHSASVNSVQWA-PHE  111 (753)
T ss_dssp             CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE-----------------ECCCSSCEEEEEEC-CGG
T ss_pred             cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc-----------------ccCCCCCeEEEEEC-CCC
Confidence            333345678999877  8888888889999988866442 11110                 01122345678886 44 


Q ss_pred             -CeEEE-EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCC------------CCeEEEEcCCCccCccceeEe
Q 048181          106 -RQLYI-ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG------------TGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus       106 -g~LyV-ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~------------~G~lyvtd~~~~~~~~~~~~~  171 (310)
                       +++++ +.....|..+|..++....... ..+ .-.....++++|.            ++..+++.             
T Consensus       112 ~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg-------------  176 (753)
T 3jro_A          112 YGPLLLVASSDGKVSVVEFKENGTTSPII-IDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-------------  176 (753)
T ss_dssp             GCSEEEEEETTSEEEEEECCSSSCCCCEE-EEC-CSSCEEEEEECCCC---------CGGGCCEEEE-------------
T ss_pred             CCCEEEEEeCCCcEEEEEeecCCCcceeE-eec-CCCceEEEEecCcccccccccccCCCCCEEEEE-------------
Confidence             55554 4444447777776542111000 011 1123456777762            13333332             


Q ss_pred             eeecCCCceEEEEcCCCC----eEEE-eecCCCCCceeEEccC---CCEEEEEecCCCeEEEEEecCCCCCce-ee---e
Q 048181          172 NITNDSTGRLLSYNPRSS----QVTV-LLRNLTGPAGVAISVD---SSFLLVSEFTGNRTLKYWLRGPRANSF-DI---I  239 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g----~~~~-~~~~l~~pnGIa~~~d---g~~Lyv~d~~~~~I~~~~~~~~~~g~~-~~---~  239 (310)
                          ..+|.|..+|..++    .... +...-.....++|+|+   ++ ++++-...+.|..+++........ .+   .
T Consensus       177 ----s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~  251 (753)
T 3jro_A          177 ----GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEE  251 (753)
T ss_dssp             ----ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSS
T ss_pred             ----ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccC
Confidence                22466666665433    1111 1222334689999999   65 566667788899888875321111 11   1


Q ss_pred             cCCCCCceeeeCCCCCCcEEEEEec
Q 048181          240 NFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       240 ~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ...+....+++++  +|.+.++...
T Consensus       252 ~~~~~v~~l~~sp--dg~~l~s~s~  274 (753)
T 3jro_A          252 KFPDVLWRASWSL--SGNVLALSGG  274 (753)
T ss_dssp             CCSSCCCCEEECT--TTCCEEEECS
T ss_pred             CCCCceEEEEEcC--CCCEEEEEcC
Confidence            2234466789998  8876655443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.12  E-value=0.15  Score=46.57  Aligned_cols=148  Identities=9%  Similarity=-0.039  Sum_probs=85.0

Q ss_pred             ceeeEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEE-eeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           95 RTFGLALHYATRQLYIADAY-SGLLVVGPNGRLATQ-LATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        95 ~P~Gla~d~~~g~LyVad~~-~gi~~id~~~~~~~~-~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      ...++.+. .+++.+++... ..+..++..+++... ...... ........+++.+.+.+++++-.             
T Consensus       232 ~~~~~~~~-~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~-------------  296 (420)
T 4gga_A          232 EVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGG-------------  296 (420)
T ss_dssp             CEEEEEEC-TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEE-------------
T ss_pred             ceeeeeec-CCCCeeeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEe-------------
Confidence            34567775 55655554333 336666655432110 000000 01123456677775455554422             


Q ss_pred             eecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEec-CCCeEEEEEecCCCCCce--eeecCCCCCceee
Q 048181          173 ITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEF-TGNRTLKYWLRGPRANSF--DIINFQAKPHNIK  249 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~-~~~~I~~~~~~~~~~g~~--~~~~l~g~Pdgl~  249 (310)
                        ...++.|..+|..+++.......-.....++++++++.|+++.. ..+.|..+++..   +..  ++.+-.+....++
T Consensus       297 --gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~---~~~v~~l~gH~~~V~~l~  371 (420)
T 4gga_A          297 --GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTSRVLSLT  371 (420)
T ss_dssp             --CTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSSCEEEEE
T ss_pred             --ecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC---CcEEEEEcCCCCCEEEEE
Confidence              12357788888888876665555567789999999998777643 568888888753   221  1122123456789


Q ss_pred             eCCCCCCcEEEEEec
Q 048181          250 RNPGLLQTFWEAAII  264 (310)
Q Consensus       250 ~d~~~dG~l~va~~~  264 (310)
                      +.+  ||.+.++...
T Consensus       372 ~sp--dg~~l~S~s~  384 (420)
T 4gga_A          372 MSP--DGATVASAAA  384 (420)
T ss_dssp             ECT--TSSCEEEEET
T ss_pred             EcC--CCCEEEEEec
Confidence            999  9987766544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.06  E-value=0.087  Score=45.46  Aligned_cols=115  Identities=13%  Similarity=0.072  Sum_probs=59.1

Q ss_pred             CCcceEEEccC--CCEEEEEeCCCeEEEEECCCce--EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC--CCe
Q 048181           34 FGGESIAFEPV--GGAFYTGVADGRILKYQAPDGF--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA--TRQ  107 (310)
Q Consensus        34 ~~Pegia~d~~--G~l~~~d~~~g~I~r~~~~g~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~--~g~  107 (310)
                      ....+++|.++  +.++++...++.|..++.....  ..+......    .+   ..............+++.+.  ++.
T Consensus       111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~p~~~~~~  183 (351)
T 3f3f_A          111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM----KV---LSIPPANHLQSDFCLSWCPSRFSPE  183 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE----ES---CSCCCSSCSCCCEEEEECCCSSSCC
T ss_pred             CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc----cc---cccccCCcccceeEEEeccCCCCCc
Confidence            45778999998  9988888889999999865321  111100000    00   00000112234557788633  255


Q ss_pred             EEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC----eEEEEc
Q 048181          108 LYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG----VVYFTD  158 (310)
Q Consensus       108 LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G----~lyvtd  158 (310)
                      ++++....+ +...+...++...+. ...+ +-...+.++++++ |    +++++-
T Consensus       184 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-h~~~i~~~~~~p~-~~~~~~~l~s~  236 (351)
T 3f3f_A          184 KLAVSALEQAIIYQRGKDGKLHVAA-KLPG-HKSLIRSISWAPS-IGRWYQLIATG  236 (351)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEEEE-ECCC-CCSCEEEEEECCC-SSCSSEEEEEE
T ss_pred             EEEEecCCCcEEEEccCCCceeeee-ecCC-CCcceeEEEECCC-CCCcceEEEEE
Confidence            544433333 544444444433222 2222 1234578889984 6    566554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.13  Score=46.87  Aligned_cols=211  Identities=11%  Similarity=0.072  Sum_probs=112.5

Q ss_pred             CCCcceEEEcc-CCCEEEEEeCCCeEEEEECCC---ceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           33 AFGGESIAFEP-VGGAFYTGVADGRILKYQAPD---GFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        33 ~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      -....+++|.+ +|.++++...++.|..++...   +.. +.          +    .... ........+++. +++.+
T Consensus        63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~----------~----~~~~-~h~~~v~~~~~~-~~~~~  125 (437)
T 3gre_A           63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV-YS----------S----SLTY-DCSSTVTQITMI-PNFDA  125 (437)
T ss_dssp             TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-CS----------C----SEEE-ECSSCEEEEEEC-TTSSE
T ss_pred             CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-cc----------e----eeec-cCCCCEEEEEEe-CCCCE
Confidence            35678999999 999888888899998887542   110 00          0    0000 112345688997 55655


Q ss_pred             EE-EeCCCcEEEEeCC---CCeEEEeec-----cCCCc---cccCccceE--EeCCCCeEEEEcCCCccCccceeEeeee
Q 048181          109 YI-ADAYSGLLVVGPN---GRLATQLAT-----GAEGQ---AFHFLDGLD--VDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus       109 yV-ad~~~gi~~id~~---~~~~~~~~~-----~~~g~---~~~~pndva--vd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      ++ +.....|..+|.+   .++......     ...-.   .-.....++  ..+ ++.++++-                
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~----------------  188 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVAL----------------  188 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEE----------------
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEE----------------
Confidence            44 4444335555542   222211110     00000   001122222  224 24444443                


Q ss_pred             cCCCceEEEEcCCCCeEEEeecC---CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC--CCCcee
Q 048181          175 NDSTGRLLSYNPRSSQVTVLLRN---LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ--AKPHNI  248 (310)
Q Consensus       175 ~~~~G~l~~~d~~~g~~~~~~~~---l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~--g~Pdgl  248 (310)
                       ..+|.|..+|..+++.......   -...+.++|+|++++ +++-+..+.|..+++..   +.... ..+.  .....+
T Consensus       189 -~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          189 -TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCV-LILGTTRGIIDIWDIRF---NVLIRSWSFGDHAPITHV  263 (437)
T ss_dssp             -ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCE-EEEEETTSCEEEEETTT---TEEEEEEBCTTCEEEEEE
T ss_pred             -eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCE-EEEEcCCCeEEEEEcCC---ccEEEEEecCCCCceEEE
Confidence             2357888899877765443332   346789999999985 45556678888888753   22111 1111  112345


Q ss_pred             ----eeCCCCCCcEEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          249 ----KRNPGLLQTFWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       249 ----~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                          .+++  +|.+.++....        +.+..+|. .|+.+..+...
T Consensus       264 ~~~~~~s~--~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~  302 (437)
T 3gre_A          264 EVCQFYGK--NSVIVVGGSSK--------TFLTIWNFVKGHCQYAFINS  302 (437)
T ss_dssp             EECTTTCT--TEEEEEEESTT--------EEEEEEETTTTEEEEEEESS
T ss_pred             EeccccCC--CccEEEEEcCC--------CcEEEEEcCCCcEEEEEEcC
Confidence                3345  66555554433        36777775 47777777643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.99  E-value=0.13  Score=50.65  Aligned_cols=168  Identities=10%  Similarity=0.126  Sum_probs=86.1

Q ss_pred             eEEEecCCCeEEEEeCC-------------CcEEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCe-EEEEcCCC
Q 048181           98 GLALHYATRQLYIADAY-------------SGLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASG  161 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~-------------~gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~  161 (310)
                      ++++. ++..||++...             ..|++.+..++..  ..+....+..+ .+-.++.++++ |+ |+++-...
T Consensus       179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~-~~~~~~~~SpD-g~~l~~~~~~~  255 (693)
T 3iuj_A          179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH-HRYVGATVTED-DRFLLISAANS  255 (693)
T ss_dssp             CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC-CSEEEEEECTT-SCEEEEEEESS
T ss_pred             cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC-eEEEEEEEcCC-CCEEEEEEccC
Confidence            45664 44556665332             2377777665432  22222211011 12346788985 64 55543221


Q ss_pred             ccCccceeEeeeecCCCceEEEEcCCCC--eEEEeecCCCCCceeEEccCCCEEEEEecC---CCeEEEEEecCCCCCce
Q 048181          162 VYDFRTIVKLNITNDSTGRLLSYNPRSS--QVTVLLRNLTGPAGVAISVDSSFLLVSEFT---GNRTLKYWLRGPRANSF  236 (310)
Q Consensus       162 ~~~~~~~~~~~~~~~~~G~l~~~d~~~g--~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~---~~~I~~~~~~~~~~g~~  236 (310)
                                    .....+|.+|.+++  +.+.+......-... ++++|+.||+.-..   +.+|+++++++......
T Consensus       256 --------------~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~  320 (693)
T 3iuj_A          256 --------------TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHW  320 (693)
T ss_dssp             --------------SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             --------------CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence                          11246888886544  455554433222222 67788878776433   47899999876432112


Q ss_pred             e-eecCCCCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCC
Q 048181          237 D-IINFQAKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEA  293 (310)
Q Consensus       237 ~-~~~l~g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~  293 (310)
                      + +.  +...+-+.++.  +|+ |.++.....      ...+.+++.+|+....+.+|.
T Consensus       321 ~~l~--~~~~~~~~~s~--~g~~lv~~~~~~g------~~~l~~~d~~g~~~~~l~~p~  369 (693)
T 3iuj_A          321 RDLI--PERQQVLTVHS--GSGYLFAEYMVDA------TARVEQFDYEGKRVREVALPG  369 (693)
T ss_dssp             EEEE--CCCSSCEEEEE--ETTEEEEEEEETT------EEEEEEECTTSCEEEEECCSS
T ss_pred             EEEe--cCCCCEEEEEE--ECCEEEEEEEECC------eeEEEEEECCCCeeEEeecCC
Confidence            2 21  11112224444  443 444433221      246788888888878777764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.028  Score=54.40  Aligned_cols=151  Identities=11%  Similarity=0.119  Sum_probs=92.6

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCce---------EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGF---------TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      .-.+++|.|||+++++...+|+|.-++..++.         .++..           +     .......-..+++. ++
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~-----------~-----~~gh~~~V~sVawS-Pd  193 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL-----------S-----DAGSKDWVTHIVWY-ED  193 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC-----------S-----CTTCCCCEEEEEEE-TT
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec-----------c-----cccccccEEEEEEc-CC
Confidence            46789999999999999999999999987542         11110           0     00112345688997 67


Q ss_pred             CeEEEEeCCCcEEEEeCCCCeEEEeeccC-CCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          106 RQLYIADAYSGLLVVGPNGRLATQLATGA-EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       106 g~LyVad~~~gi~~id~~~~~~~~~~~~~-~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      | |.++...+.+..++.+++....+.... .+. -....+++++  +..|-.+ .                  +++|..+
T Consensus       194 g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h-~~~V~svaFs--g~~LASa-~------------------~~tIkLW  250 (588)
T 2j04_A          194 V-LVAALSNNSVFSMTVSASSHQPVSRMIQNAS-RRKITDLKIV--DYKVVLT-C------------------PGYVHKI  250 (588)
T ss_dssp             E-EEEEETTCCEEEECCCSSSSCCCEEEEECCC-SSCCCCEEEE--TTEEEEE-C------------------SSEEEEE
T ss_pred             c-EEEEeCCCeEEEEECCCCccccceeeecccc-cCcEEEEEEE--CCEEEEE-e------------------CCeEEEE
Confidence            7 655555666888888776531100011 111 1346788887  2444333 1                  2678888


Q ss_pred             cCCCCeEEEee-cCCCCCceeEE--ccCCCEEEEEecCCC-eEEEE
Q 048181          185 NPRSSQVTVLL-RNLTGPAGVAI--SVDSSFLLVSEFTGN-RTLKY  226 (310)
Q Consensus       185 d~~~g~~~~~~-~~l~~pnGIa~--~~dg~~Lyv~d~~~~-~I~~~  226 (310)
                      |..+++..... +....-++|+|  +||+..|.++. ..+ +||.+
T Consensus       251 d~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~klw~~  295 (588)
T 2j04_A          251 DLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSYKVLLE  295 (588)
T ss_dssp             ETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEEEEEES
T ss_pred             ECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCCEEEee
Confidence            88777774444 44455689999  99997555554 333 46653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.93  E-value=0.24  Score=45.44  Aligned_cols=228  Identities=8%  Similarity=-0.062  Sum_probs=120.3

Q ss_pred             CCcceEEEc--cCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCc-----cccCCCCCCceeeEEEecCCC
Q 048181           34 FGGESIAFE--PVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTT-----NLDLGPICRRTFGLALHYATR  106 (310)
Q Consensus        34 ~~Pegia~d--~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~P~Gla~d~~~g  106 (310)
                      ....++++.  +++.++++...++.|..++........................     .............+..  ...
T Consensus       204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~  281 (464)
T 3v7d_B          204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--HGN  281 (464)
T ss_dssp             SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--ETT
T ss_pred             CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC--CCC
Confidence            345567776  4667777788888888887653221100000000000000000     0000011111223322  244


Q ss_pred             eEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          107 QLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       107 ~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      .|+++.....|..+|..+++......   + +-.....++++++ |+.+++-.                 .+|.|..+|.
T Consensus       282 ~l~~~~~d~~i~vwd~~~~~~~~~~~---~-~~~~v~~~~~~~~-~~~l~sg~-----------------~dg~i~vwd~  339 (464)
T 3v7d_B          282 IVVSGSYDNTLIVWDVAQMKCLYILS---G-HTDRIYSTIYDHE-RKRCISAS-----------------MDTTIRIWDL  339 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEC---C-CSSCEEEEEEETT-TTEEEEEE-----------------TTSCEEEEET
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEec---C-CCCCEEEEEEcCC-CCEEEEEe-----------------CCCcEEEEEC
Confidence            45555555558888987765432221   1 1234578899995 76665543                 2477888888


Q ss_pred             CCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          187 RSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       187 ~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .+++...... .-.....++++  ++ .+++-...+.|..+++...   .... .........+++..  +|++.++...
T Consensus       340 ~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~s~dg~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~--~~~~l~~~~d  411 (464)
T 3v7d_B          340 ENGELMYTLQGHTALVGLLRLS--DK-FLVSAAADGSIRGWDANDY---SRKFSYHHTNLSAITTFYV--SDNILVSGSE  411 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEC--SS-EEEEEETTSEEEEEETTTC---CEEEEEECTTCCCEEEEEE--CSSEEEEEET
T ss_pred             CCCcEEEEEeCCCCcEEEEEEc--CC-EEEEEeCCCcEEEEECCCC---ceeeeecCCCCccEEEEEe--CCCEEEEecC
Confidence            7776544333 23345678887  44 4566677888999988642   2222 22223355678888  8887777664


Q ss_pred             CCCCCCCCceeeEEEC-CCCcEEEEEecCCCccccceeEEEe
Q 048181          265 TRQPAGTPVPIGQRIS-AFGAVLDTISFEAQYSTTPISEVQP  305 (310)
Q Consensus       265 ~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~~~~~~~t~~~~  305 (310)
                      .         .+..+| .+|+.+..+..+..   ..|+++.-
T Consensus       412 g---------~i~iwd~~~g~~~~~~~~~~~---~~v~~v~~  441 (464)
T 3v7d_B          412 N---------QFNIYNLRSGKLVHANILKDA---DQIWSVNF  441 (464)
T ss_dssp             T---------EEEEEETTTCCEEESCTTTTC---SEEEEEEE
T ss_pred             C---------eEEEEECCCCcEEehhhccCC---CcEEEEEe
Confidence            3         677777 46777765444432   35555543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.93  E-value=0.22  Score=49.05  Aligned_cols=152  Identities=14%  Similarity=0.186  Sum_probs=81.0

Q ss_pred             eeEEEecCCCe-EEEEeC---C-CcEEEEeCCCC--eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCcccee
Q 048181           97 FGLALHYATRQ-LYIADA---Y-SGLLVVGPNGR--LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIV  169 (310)
Q Consensus        97 ~Gla~d~~~g~-LyVad~---~-~gi~~id~~~~--~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~  169 (310)
                      .++.+. ++|+ |+++..   . +.|+.++.+++  ..+.+.......  .   .. ++++++.|||.....        
T Consensus       237 ~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~--~---~~-~~~~g~~l~~~t~~~--------  301 (693)
T 3iuj_A          237 VGATVT-EDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD--V---SL-VDNKGSTLYLLTNRD--------  301 (693)
T ss_dssp             EEEEEC-TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC--E---EE-EEEETTEEEEEECTT--------
T ss_pred             EEEEEc-CCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce--E---EE-EeccCCEEEEEECCC--------
Confidence            467776 5665 544322   1 25888887654  444443322211  1   11 444457888764321        


Q ss_pred             EeeeecCCCceEEEEcCCCCeE---EEeecCCCCCceeEEccCCCEEEEEecCCC--eEEEEEecCCCCCceeeecCC--
Q 048181          170 KLNITNDSTGRLLSYNPRSSQV---TVLLRNLTGPAGVAISVDSSFLLVSEFTGN--RTLKYWLRGPRANSFDIINFQ--  242 (310)
Q Consensus       170 ~~~~~~~~~G~l~~~d~~~g~~---~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~~~~~g~~~~~~l~--  242 (310)
                            .++++|+++|.+++..   +.+...-.  +-+.+++++++|+++....+  +|+.+++++.   ..+...++  
T Consensus       302 ------~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---~~~~l~~p~~  370 (693)
T 3iuj_A          302 ------APNRRLVTVDAANPGPAHWRDLIPERQ--QVLTVHSGSGYLFAEYMVDATARVEQFDYEGK---RVREVALPGL  370 (693)
T ss_dssp             ------CTTCEEEEEETTSCCGGGCEEEECCCS--SCEEEEEETTEEEEEEEETTEEEEEEECTTSC---EEEEECCSSS
T ss_pred             ------CCCCEEEEEeCCCCCccccEEEecCCC--CEEEEEEECCEEEEEEEECCeeEEEEEECCCC---eeEEeecCCC
Confidence                  2467899999876543   44443222  22388899998888766554  6888877642   21112222  


Q ss_pred             CCCceeeeCCCCCC-cEEEEEecCCCCCCCCceeeEEECC
Q 048181          243 AKPHNIKRNPGLLQ-TFWEAAIITRQPAGTPVPIGQRISA  281 (310)
Q Consensus       243 g~Pdgl~~d~~~dG-~l~va~~~~~~~~~~~~~~v~~~~~  281 (310)
                      +.-.++..+.  ++ .+++.......|     +.+.++|.
T Consensus       371 ~~~~~~~~~~--d~~~l~~~~ss~~tP-----~~l~~~d~  403 (693)
T 3iuj_A          371 GSVSGFNGKH--DDPALYFGFENYAQP-----PTLYRFEP  403 (693)
T ss_dssp             SEEEECCCCT--TCSCEEEEEECSSSC-----CEEEEECT
T ss_pred             ceEEeeecCC--CCCEEEEEecCCCCC-----CEEEEEEC
Confidence            1223444554  55 566665543322     34555554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.93  E-value=0.14  Score=50.76  Aligned_cols=124  Identities=13%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCC-CceeeEEEecCCCeEEEEeCCCcEEEEeC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPIC-RRTFGLALHYATRQLYIADAYSGLLVVGP  122 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~P~Gla~d~~~g~LyVad~~~gi~~id~  122 (310)
                      +|. +|+...+++|+.++...+.+.+.........        ......+ ....+++++  +++||+......|+.+|.
T Consensus        70 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~g~v~v~~~dg~l~AlDa  138 (689)
T 1yiq_A           70 DGV-MYTTGPFSVVYALDARDGRLIWKYDPQSDRH--------RAGEACCDAVNRGVAVW--KGKVYVGVLDGRLEAIDA  138 (689)
T ss_dssp             TTE-EEEECGGGCEEEEETTTCCEEEEECCCCCGG--------GGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEET
T ss_pred             CCE-EEEEcCCCeEEEEECCCCceeEEEcCCCCcc--------ccccccccCCCCccEEE--CCEEEEEccCCEEEEEEC
Confidence            444 5666668899999987655555432111000        0000001 112356774  789999876666999999


Q ss_pred             CCCeEEEeeccC-CCcc-ccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          123 NGRLATQLATGA-EGQA-FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       123 ~~~~~~~~~~~~-~g~~-~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ++|+...-.... +... .......++.  +|.+|+......            ...+|.|+.+|..+|+..
T Consensus       139 ~TG~~~W~~~~~~~~~~~~~~~~sP~v~--~g~v~vg~~~~~------------~~~~g~v~a~D~~tG~~~  196 (689)
T 1yiq_A          139 KTGQRAWSVDTRADHKRSYTITGAPRVV--NGKVVIGNGGAE------------FGVRGYVTAYDAETGKEA  196 (689)
T ss_dssp             TTCCEEEEEECCSCTTSCCBCCSCCEEE--TTEEEECCBCTT------------TCCBCEEEEEETTTCCEE
T ss_pred             CCCCEeeeecCcCCCCCCccccCCcEEE--CCEEEEEeCCCc------------cCCCCEEEEEECCCCcEE
Confidence            888754222211 1100 1111122343  488998754321            123578888888888754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.91  E-value=0.17  Score=43.45  Aligned_cols=83  Identities=11%  Similarity=0.053  Sum_probs=52.3

Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEe-cCCCeEEEEEecCCCCCce-e-eecCCCCCceeeeCCC
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSE-FTGNRTLKYWLRGPRANSF-D-IINFQAKPHNIKRNPG  253 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d-~~~~~I~~~~~~~~~~g~~-~-~~~l~g~Pdgl~~d~~  253 (310)
                      .++.+..+|..................++++++++.++++. ...+.|+.+++..   +.. . +.+-.+....+++.+ 
T Consensus       219 ~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~---~~~~~~l~gH~~~V~~l~~sp-  294 (318)
T 4ggc_A          219 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---MAKVAELKGHTSRVLSLTMSP-  294 (318)
T ss_dssp             TTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---CCEEEEECCCSSCEEEEEECT-
T ss_pred             CCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC---CcEEEEEcCCCCCEEEEEEcC-
Confidence            34566667766555544444455668899999999777654 4578888888753   221 1 122123356788998 


Q ss_pred             CCCcEEEEEec
Q 048181          254 LLQTFWEAAII  264 (310)
Q Consensus       254 ~dG~l~va~~~  264 (310)
                       ||.+.++...
T Consensus       295 -dg~~l~S~s~  304 (318)
T 4ggc_A          295 -DGATVASAAA  304 (318)
T ss_dssp             -TSSCEEEEET
T ss_pred             -CCCEEEEEec
Confidence             9987666543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.22  Score=43.89  Aligned_cols=157  Identities=8%  Similarity=-0.018  Sum_probs=87.1

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCce------EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGF------TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      ....+++|.|+|+++.+...++.|.-++.....      ....                 .+.........++++ ++|+
T Consensus        59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-----------------~~~~h~~~V~~v~~s-p~g~  120 (330)
T 2hes_X           59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA-----------------IIEGHENEVKGVAWS-NDGY  120 (330)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEE-----------------EEC----CEEEEEEC-TTSC
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEE-----------------EEcCCCCcEEEEEEC-CCCC
Confidence            346789999999988888889988888764211      1110                 001112345688997 5676


Q ss_pred             EEEE-eCCCcEEEEeCC-CCe-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          108 LYIA-DAYSGLLVVGPN-GRL-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       108 LyVa-d~~~gi~~id~~-~~~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      ++++ .....|..+|.. ++. .+.+ ....+ +-...+.++++|+ +.+++|-..                 +|.+..+
T Consensus       121 ~las~s~D~~v~iwd~~~~~~~~~~~-~~~~~-h~~~v~~v~~~p~-~~~l~s~s~-----------------D~~i~iW  180 (330)
T 2hes_X          121 YLATCSRDKSVWIWETDESGEEYECI-SVLQE-HSQDVKHVIWHPS-EALLASSSY-----------------DDTVRIW  180 (330)
T ss_dssp             EEEEEETTSCEEEEECCTTCCCCEEE-EEECC-CSSCEEEEEECSS-SSEEEEEET-----------------TSCEEEE
T ss_pred             EEEEEeCCCEEEEEeccCCCCCeEEE-EEecc-CCCceEEEEECCC-CCEEEEEcC-----------------CCeEEEE
Confidence            6554 334447777763 221 1111 11111 1234678999994 877776432                 3455555


Q ss_pred             cCCCCe---EEEeecCCCCCceeEEccC--CCEEEEEecCCCeEEEEEec
Q 048181          185 NPRSSQ---VTVLLRNLTGPAGVAISVD--SSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       185 d~~~g~---~~~~~~~l~~pnGIa~~~d--g~~Lyv~d~~~~~I~~~~~~  229 (310)
                      |..++.   +..+...-..-..++|+|+  +. ++++-...+.|..+++.
T Consensus       181 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEE
T ss_pred             ECCCCCeeEEEEccCCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEec
Confidence            543332   1222222234578999998  44 45666667777777665

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.85  E-value=0.2  Score=43.35  Aligned_cols=190  Identities=9%  Similarity=0.006  Sum_probs=101.2

Q ss_pred             CcceEEEcc--CCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEEE
Q 048181           35 GGESIAFEP--VGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLYI  110 (310)
Q Consensus        35 ~Pegia~d~--~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~LyV  110 (310)
                      ...+++|.+  +|+++++...++.|..++...+. .....                 ..........+++.+. .|.+++
T Consensus        55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~-----------------~~~h~~~v~~v~~~p~~~g~~l~  117 (297)
T 2pm7_B           55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV-----------------HAVHSASVNSVQWAPHEYGPMLL  117 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE-----------------ECCCSSCEEEEEECCGGGCSEEE
T ss_pred             CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE-----------------eecCCCceeEEEeCcCCCCcEEE
Confidence            345788864  48888888889999888876431 11100                 0011223457888632 155544


Q ss_pred             -EeCCCcEEEEeCCCCe---EEEeeccCCCccccCccceEEeCCC------------CeEEEEcCCCccCccceeEeeee
Q 048181          111 -ADAYSGLLVVGPNGRL---ATQLATGAEGQAFHFLDGLDVDQGT------------GVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus       111 -ad~~~gi~~id~~~~~---~~~~~~~~~g~~~~~pndvavd~~~------------G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                       +.....|..+|..++.   ...+    .+ .-...+.++++|+.            ++.+++-                
T Consensus       118 s~s~d~~v~~wd~~~~~~~~~~~~----~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg----------------  176 (297)
T 2pm7_B          118 VASSDGKVSVVEFKENGTTSPIII----DA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTG----------------  176 (297)
T ss_dssp             EEETTSEEEEEEBCSSSCBCCEEE----EC-CSSCEEEEEECCCC------------CCEEEEE----------------
T ss_pred             EEECCCcEEEEEecCCCceeeeee----ec-ccCccceEeecCCcccccccCCCCCCcceEEEE----------------
Confidence             4444446677765432   1111    11 11234566777631            2333332                


Q ss_pred             cCCCceEEEEcCCCCe----EE-EeecCCCCCceeEEccCC--CEEEEEecCCCeEEEEEecCCCCC-ceee---ecCCC
Q 048181          175 NDSTGRLLSYNPRSSQ----VT-VLLRNLTGPAGVAISVDS--SFLLVSEFTGNRTLKYWLRGPRAN-SFDI---INFQA  243 (310)
Q Consensus       175 ~~~~G~l~~~d~~~g~----~~-~~~~~l~~pnGIa~~~dg--~~Lyv~d~~~~~I~~~~~~~~~~g-~~~~---~~l~g  243 (310)
                       ..+|.|..+|..+++    .. .+...-...+.++|+|++  ..++++-+..+.|..++++..... ...+   ...+.
T Consensus       177 -s~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~  255 (297)
T 2pm7_B          177 -GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD  255 (297)
T ss_dssp             -ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred             -cCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC
Confidence             234556555543332    11 222223346899999996  356777778888888887642111 1111   12233


Q ss_pred             CCceeeeCCCCCCcEEEEEecC
Q 048181          244 KPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ....+++.+  +|++.++....
T Consensus       256 ~v~~~~~s~--~g~~las~~~D  275 (297)
T 2pm7_B          256 VLWRASWSL--SGNVLALSGGD  275 (297)
T ss_dssp             CEEEEEECS--SSCCEEEEETT
T ss_pred             cEEEEEECC--CCCEEEEEcCC
Confidence            445678888  89876665443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.81  E-value=0.42  Score=46.51  Aligned_cols=130  Identities=9%  Similarity=0.043  Sum_probs=67.1

Q ss_pred             EEEccCCCEEEEEeC-CCeEEEEEC-CCceEEeeeecCCCCccccCCCccccCCCCC-CceeeEEEecCCCe----EEEE
Q 048181           39 IAFEPVGGAFYTGVA-DGRILKYQA-PDGFTDFAFTTPTRSKAVCDGTTNLDLGPIC-RRTFGLALHYATRQ----LYIA  111 (310)
Q Consensus        39 ia~d~~G~l~~~d~~-~g~I~r~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~P~Gla~d~~~g~----LyVa  111 (310)
                      +++. +|. +|+... ++.|+.++. ..+.+.+.........       ... ...+ ....|+++.+.+++    ||+.
T Consensus        58 P~v~-~g~-vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~-------~~~-~~~~~~~~~g~av~p~~g~~~~rV~v~  127 (599)
T 1w6s_A           58 PLVV-DGK-MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPA-------ARA-VACCDLVNRGLAYWPGDGKTPALILKT  127 (599)
T ss_dssp             CEEE-TTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCCGG-------GGG-GCSSCSCCCCCEEECCCSSSCCEEEEE
T ss_pred             cEEE-CCE-EEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcc-------ccc-cccccccccceEEEecCCcceeEEEEE
Confidence            3443 455 555555 789999998 6555445432111000       000 0011 11246777222566    9998


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCc-cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      .....|+.+|.++|+...-....... ........++.  +|.+|+.....            +...+|.|+.+|..+|+
T Consensus       128 t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~------------e~g~~g~v~A~D~~TG~  193 (599)
T 1w6s_A          128 QLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGA------------ELGVRGYLTAYDVKTGE  193 (599)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCG------------GGTCCCEEEEEETTTCC
T ss_pred             cCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCEEEEEeccc------------ccCCCCeEEEEECCCCc
Confidence            76666999999888764221111100 00111122344  48898875432            11235788888888887


Q ss_pred             EE
Q 048181          191 VT  192 (310)
Q Consensus       191 ~~  192 (310)
                      ..
T Consensus       194 ~~  195 (599)
T 1w6s_A          194 QV  195 (599)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.78  E-value=0.015  Score=57.91  Aligned_cols=119  Identities=11%  Similarity=0.013  Sum_probs=74.2

Q ss_pred             eEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCcccc-CccceEEeCCCCe-EEEEcCCCccCccceeEeeeec
Q 048181           98 GLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFH-FLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~-~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      .+++. ++|.+++++ ...|..++.++++...+...-....+. ..++++++|+ |+ |.++.....         +...
T Consensus        21 ~~~w~-~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spd-g~~l~~~~~~~~---------~~r~   88 (740)
T 4a5s_A           21 SLRWI-SDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD-GQFILLEYNYVK---------QWRH   88 (740)
T ss_dssp             CEEEC-SSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTT-SSEEEEEEEEEE---------CSSS
T ss_pred             ccEEC-CCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCC-CCEEEEEECCee---------eEEE
Confidence            67885 678777766 445999999988766554322111111 2356899995 65 444332110         0011


Q ss_pred             CCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          176 DSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      ...+.++.+|..+++.+.+......-...+|||||+.|.++  ..+.|+..+..+
T Consensus        89 ~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~  141 (740)
T 4a5s_A           89 SYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPN  141 (740)
T ss_dssp             CEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTT
T ss_pred             ccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCC
Confidence            22477899999888876554433345688999999977666  346788877654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.77  E-value=0.26  Score=48.41  Aligned_cols=183  Identities=9%  Similarity=0.050  Sum_probs=92.9

Q ss_pred             ceEEEccCCCE-EEEEeC------------CCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           37 ESIAFEPVGGA-FYTGVA------------DGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        37 egia~d~~G~l-~~~d~~------------~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      .+++|.+||.. +|+...            ..+|++++.+++..  ......                ......-.++++
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~----------------~~~~~~~~~~~~  234 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER----------------TGDPTTFLQSDL  234 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC----------------CCCTTCEEEEEE
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec----------------CCCCEEEEEEEE
Confidence            57899999974 444432            23488888764321  111100                001123347788


Q ss_pred             ecCCCe-EEEEeCC----CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181          102 HYATRQ-LYIADAY----SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus       102 d~~~g~-LyVad~~----~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      + ++|+ |+++...    ..|+.++..+++.+.+......     ..... .++ |.+|+....              ..
T Consensus       235 S-pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-----~~~~~-~~~-g~l~~~s~~--------------~~  292 (695)
T 2bkl_A          235 S-RDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA-----KYEVH-AWK-DRFYVLTDE--------------GA  292 (695)
T ss_dssp             C-TTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC-----CEEEE-EET-TEEEEEECT--------------TC
T ss_pred             C-CCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc-----eEEEE-ecC-CcEEEEECC--------------CC
Confidence            6 5554 5444322    2488887766665555432221     11222 243 447775321              12


Q ss_pred             CCceEEEEcCCCCe---EEEeecCC--CCCceeEEccCCCEEEEEecCC--CeEEEEEecCCCCCceeeecCC--CCCce
Q 048181          177 STGRLLSYNPRSSQ---VTVLLRNL--TGPAGVAISVDSSFLLVSEFTG--NRTLKYWLRGPRANSFDIINFQ--AKPHN  247 (310)
Q Consensus       177 ~~G~l~~~d~~~g~---~~~~~~~l--~~pnGIa~~~dg~~Lyv~d~~~--~~I~~~~~~~~~~g~~~~~~l~--g~Pdg  247 (310)
                      ++++|+++|.++++   .+.+...-  ..-.+++++ ++ .|+++....  .+|+.+++++.   ..+...++  +...+
T Consensus       293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~---~~~~l~~~~~~~v~~  367 (695)
T 2bkl_A          293 PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGK---PVRTVQLPGVGAASN  367 (695)
T ss_dssp             TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC---EEEECCCSSSSEECC
T ss_pred             CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC---eeEEecCCCCeEEEE
Confidence            46789999987654   24443321  123678887 44 577766544  46777776542   11111122  22344


Q ss_pred             eeeCCCCCC-cEEEEEec
Q 048181          248 IKRNPGLLQ-TFWEAAII  264 (310)
Q Consensus       248 l~~d~~~dG-~l~va~~~  264 (310)
                      +.+++  +| .++++..+
T Consensus       368 ~~~s~--d~~~l~~~~ss  383 (695)
T 2bkl_A          368 LMGLE--DLDDAYYVFTS  383 (695)
T ss_dssp             CBSCT--TCSEEEEEEEE
T ss_pred             eecCC--CCCEEEEEEcC
Confidence            55666  66 45555444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.77  E-value=0.0024  Score=58.29  Aligned_cols=194  Identities=9%  Similarity=0.119  Sum_probs=79.3

Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC-CCc
Q 048181           38 SIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA-YSG  116 (310)
Q Consensus        38 gia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~-~~g  116 (310)
                      +++++  +..+|+...++.|+.++...+...+....         +       .....|   ++  .++++|++.. ...
T Consensus         4 sP~v~--~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------~-------~~~s~p---~~--~~g~~~v~~s~dg~   60 (369)
T 2hz6_A            4 TVTLP--ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------D-------PVLQVP---TH--VEEPAFLPDPNDGS   60 (369)
T ss_dssp             ----C--TTEEEEEETTSEEEEEETTTCCEEEEEEC---------C-------CSCCCC----------CCEEECTTTCC
T ss_pred             CCeee--CCEEEEEcCCCEEEEEECCCCCEEEEecC---------C-------Cceecc---eE--cCCCEEEEeCCCCE
Confidence            44553  45577777899999999775544443210         0       111112   22  3566777643 334


Q ss_pred             EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec
Q 048181          117 LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR  196 (310)
Q Consensus       117 i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~  196 (310)
                      |+.+|.++|+...... ........ ...++.. ++.+|+..                  .+|.|+.+|+.+|+..-.  
T Consensus        61 l~a~d~~tG~~~w~~~-~~~~~~~~-~sp~~~~-~~~v~~g~------------------~dg~v~a~D~~tG~~~w~--  117 (369)
T 2hz6_A           61 LYTLGSKNNEGLTKLP-FTIPELVQ-ASPCRSS-DGILYMGK------------------KQDIWYVIDLLTGEKQQT--  117 (369)
T ss_dssp             EEEC-----CCSEECS-CCHHHHHT-TCSCC------CCCCE------------------EEEEEEEECCC---------
T ss_pred             EEEEECCCCceeeeee-ccCccccc-cCceEec-CCEEEEEe------------------CCCEEEEEECCCCcEEEE--
Confidence            8889987665321111 11000000 0112222 36666542                  136799999888865322  


Q ss_pred             CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC-CCceeeecCCCCCceeeeCC--CCCCcEEEEEecCCCCCCCCc
Q 048181          197 NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR-ANSFDIINFQAKPHNIKRNP--GLLQTFWEAAIITRQPAGTPV  273 (310)
Q Consensus       197 ~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~-~g~~~~~~l~g~Pdgl~~d~--~~dG~l~va~~~~~~~~~~~~  273 (310)
                       +..+..+.++|+++.||+.. ..+.|+.++....+ .-..+....    ...+++.  ..++.+|++....        
T Consensus       118 -~~~~~~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg--------  183 (369)
T 2hz6_A          118 -LSSAFADSLSPSTSLLYLGR-TEYTITMYDTKTRELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDG--------  183 (369)
T ss_dssp             ----------------EEEEE-EEEEEECCCSSSSSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSC--------
T ss_pred             -ecCCCcccccccCCEEEEEe-cCCEEEEEECCCCCEEEeEecccc----cCccccCCccccceEEEECCCC--------
Confidence             12223355667777788764 45677777764211 111111111    1122332  0037889887654        


Q ss_pred             eeeEEECC-CCcEEEEEecC
Q 048181          274 PIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       274 ~~v~~~~~-~G~~~~~~~~p  292 (310)
                       .+..+|. +|+++-.....
T Consensus       184 -~v~a~d~~tG~~~W~~~~~  202 (369)
T 2hz6_A          184 -LVVTVDSESGDVLWIQNYA  202 (369)
T ss_dssp             -EEEEECTTTCCEEEEEECS
T ss_pred             -EEEEEECCCCcEEEEecCC
Confidence             6888996 68887766644

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.69  E-value=0.15  Score=44.58  Aligned_cols=160  Identities=11%  Similarity=-0.026  Sum_probs=86.5

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC-CCeEEE-
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA-TRQLYI-  110 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~-~g~LyV-  110 (310)
                      ..-.+++|+++|+++.+...++.|..++...+. ..+..                 +......-..+++.++ ++++++ 
T Consensus        14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~-----------------l~gH~~~V~~v~~~~~~~~~~l~s   76 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD-----------------LRGHEGPVWQVAWAHPMYGNILAS   76 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE-----------------EECCSSCEEEEEECCGGGSSCEEE
T ss_pred             CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE-----------------EcCCCccEEEEEeCCCCCCCEEEE
Confidence            345689999999988888889988888765332 11110                 0011223457888422 355544 


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCC-CeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGT-GVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~-G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      +.....|...|..+++...... ..+ +-...+.++++|+. |.++++-..                 +|.+..+|..++
T Consensus        77 ~s~D~~v~iWd~~~~~~~~~~~-~~~-h~~~V~~v~~~p~~~g~~lasgs~-----------------D~~i~lwd~~~~  137 (316)
T 3bg1_A           77 CSYDRKVIIWREENGTWEKSHE-HAG-HDSSVNSVCWAPHDYGLILACGSS-----------------DGAISLLTYTGE  137 (316)
T ss_dssp             EETTSCEEEECCSSSCCCEEEE-ECC-CSSCCCEEEECCTTTCSCEEEECS-----------------SSCEEEEEECSS
T ss_pred             EECCCEEEEEECCCCcceEEEE-ccC-CCCceEEEEECCCCCCcEEEEEcC-----------------CCCEEEEecCCC
Confidence            4444457778877653211111 111 12346789998841 555555432                 345555554332


Q ss_pred             -eEEEee---cCCCCCceeEEccCC----------------CEEEEEecCCCeEEEEEec
Q 048181          190 -QVTVLL---RNLTGPAGVAISVDS----------------SFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       190 -~~~~~~---~~l~~pnGIa~~~dg----------------~~Lyv~d~~~~~I~~~~~~  229 (310)
                       ......   .....-+.++|+|++                ..++++-...+.|..+++.
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~  197 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE  197 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred             CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence             121111   111234678888873                1255666667777777664

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.68  E-value=0.37  Score=44.08  Aligned_cols=111  Identities=14%  Similarity=0.057  Sum_probs=60.1

Q ss_pred             eeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeec
Q 048181           96 TFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITN  175 (310)
Q Consensus        96 P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~  175 (310)
                      ...+.++  +..|+++.....|..+|..+++......... ........+++++   +.+++-.                
T Consensus       322 v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~---~~l~s~~----------------  379 (445)
T 2ovr_B          322 TSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPN-KHQSAVTCLQFNK---NFVITSS----------------  379 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTT-SCSSCEEEEEECS---SEEEEEE----------------
T ss_pred             EEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCC-CCCCCEEEEEECC---CEEEEEe----------------
Confidence            3456654  4455545444457788877655322221111 1122344566642   3333322                


Q ss_pred             CCCceEEEEcCCCCeEEEee------cCCCCCceeEEccCCCEEEEEecCCC----eEEEEEecC
Q 048181          176 DSTGRLLSYNPRSSQVTVLL------RNLTGPAGVAISVDSSFLLVSEFTGN----RTLKYWLRG  230 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~------~~l~~pnGIa~~~dg~~Lyv~d~~~~----~I~~~~~~~  230 (310)
                       .+|.|..+|..+++.....      ..-...+.++++|+|..|.++ ...+    +|..++++.
T Consensus       380 -~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~-~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          380 -DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG-SRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             -TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE-CSSSSSCCEEEEEECCC
T ss_pred             -CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc-ccCCCCccEEEEEECCC
Confidence             2478888887777644332      122345789999998754444 3344    588888764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.3  Score=42.94  Aligned_cols=156  Identities=16%  Similarity=0.060  Sum_probs=85.0

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe-
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD-  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad-  112 (310)
                      .-.+++++++  ++.+...++.|..++...+ ........               ..........+++. ++++++++- 
T Consensus        16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~---------------~~~h~~~v~~v~~s-p~~~~las~s   77 (330)
T 2hes_X           16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD---------------ETAHKKAIRSVAWR-PHTSLLAAGS   77 (330)
T ss_dssp             CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC---------------TTCCCSCEEEEEEC-TTSSEEEEEE
T ss_pred             ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe---------------cCCccCCEEEEEEC-CCCCEEEEEe
Confidence            4567788765  6777888899988887642 22111000               00012235678997 567665543 


Q ss_pred             CCCcEEEEeCCCCe-----EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          113 AYSGLLVVGPNGRL-----ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       113 ~~~gi~~id~~~~~-----~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      ....|..++.+...     ...+ ....+ +-...+.++++|+ |+.+++-..                 +|.+..+|..
T Consensus        78 ~D~~v~iw~~~~~~~~~~~~~~~-~~~~~-h~~~V~~v~~sp~-g~~las~s~-----------------D~~v~iwd~~  137 (330)
T 2hes_X           78 FDSTVSIWAKEESADRTFEMDLL-AIIEG-HENEVKGVAWSND-GYYLATCSR-----------------DKSVWIWETD  137 (330)
T ss_dssp             TTSCEEEEEC-------CCCEEE-EEEC-----CEEEEEECTT-SCEEEEEET-----------------TSCEEEEECC
T ss_pred             CCCcEEEEEcccCcCccccceeE-EEEcC-CCCcEEEEEECCC-CCEEEEEeC-----------------CCEEEEEecc
Confidence            33346666653211     1111 11122 2234678999994 877766432                 3566666652


Q ss_pred             -CC---eE-EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          188 -SS---QV-TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       188 -~g---~~-~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                       .+   +. ..+...-...+.++|+|+++ ++++-+..+.|..++..
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDY  183 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECC
Confidence             11   11 22223334568999999998 55666667777777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.61  E-value=0.014  Score=49.56  Aligned_cols=135  Identities=15%  Similarity=0.080  Sum_probs=78.8

Q ss_pred             ceeeEEEecCCCeEEEEeCCCcEEEEeCCCC-------eEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccc
Q 048181           95 RTFGLALHYATRQLYIADAYSGLLVVGPNGR-------LATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRT  167 (310)
Q Consensus        95 ~P~Gla~d~~~g~LyVad~~~gi~~id~~~~-------~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~  167 (310)
                      +...|+++ ++|.||+. ....++++++.+.       ..+.+...    ..+....+.+|+ +|.||...         
T Consensus        42 ~~~~laf~-P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~----Gw~~F~a~~fD~-~G~LYav~---------  105 (236)
T 1tl2_A           42 NFKFLFLS-PGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNG----GWNQFQFLFFDP-NGYLYAVS---------  105 (236)
T ss_dssp             TCSEEEEC-TTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECS----CGGGCSEEEECT-TSCEEEEE---------
T ss_pred             cceeEEEC-CCccEEEE-eCCeEEEECCCCCCcccccccccEeccc----ccccceEEEECC-CCCEEEeC---------
Confidence            44589998 59999988 3334999998652       22222211    122246799999 59999872         


Q ss_pred             eeEeeeecCCCceEEEEcCCCC-e------EEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEE-ecCCCCCce--
Q 048181          168 IVKLNITNDSTGRLLSYNPRSS-Q------VTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW-LRGPRANSF--  236 (310)
Q Consensus       168 ~~~~~~~~~~~G~l~~~d~~~g-~------~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~-~~~~~~g~~--  236 (310)
                                +|.|||+++-+. .      .+.+- .+...-.-|.++|+|. ||.+.  .++++|-. +.+  .+..  
T Consensus       106 ----------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~--~~~~wl  170 (236)
T 1tl2_A          106 ----------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVS--NQDNWL  170 (236)
T ss_dssp             ----------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSS--TTCCHH
T ss_pred             ----------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCC--CCcccc
Confidence                      378999987331 1      11111 1222237899999996 88887  66676522 211  1111  


Q ss_pred             ---ee-e-cCCCCCceeeeCCCCCCcEEEEE
Q 048181          237 ---DI-I-NFQAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       237 ---~~-~-~l~g~Pdgl~~d~~~dG~l~va~  262 (310)
                         .. . .-...-.-+.+++  +|+||.+.
T Consensus       171 ~~~~~~g~~g~~~yr~l~f~~--~G~l~~v~  199 (236)
T 1tl2_A          171 ARATKIGQGGWDTFKFLFFSS--VGTLFGVQ  199 (236)
T ss_dssp             HHCEEEESSSGGGEEEEEECT--TSCEEEEE
T ss_pred             cccceeccCCcceEEEEEECC--CCcEEEEe
Confidence               11 0 0000112256888  89998887

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.57  E-value=0.11  Score=48.21  Aligned_cols=159  Identities=11%  Similarity=-0.005  Sum_probs=87.7

Q ss_pred             CcceEEEccCCCEEEE----EeCCCeEEEEECCCc------e-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181           35 GGESIAFEPVGGAFYT----GVADGRILKYQAPDG------F-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY  103 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~----d~~~g~I~r~~~~g~------~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~  103 (310)
                      ...+++|.++|+++++    ...++.|..++....      . ..+...              ............+++++
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~--------------~~~~~h~~~V~~v~~~p  159 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH--------------KLLKDAGGMVIDMKWNP  159 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE--------------ECCCSGGGSEEEEEECS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee--------------eccCCCCCceEEEEECC
Confidence            4789999999997773    445677777764321      0 000000              00001123467899974


Q ss_pred             CCCeEEEE-eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEE
Q 048181          104 ATRQLYIA-DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLL  182 (310)
Q Consensus       104 ~~g~LyVa-d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~  182 (310)
                      .++.++++ .....|..+|..++... ....  + .-...+.++++++ |+.+++-.                 .+|.|.
T Consensus       160 ~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~--~-~~~~v~~v~wspd-g~~lasgs-----------------~dg~v~  217 (434)
T 2oit_A          160 TVPSMVAVCLADGSIAVLQVTETVKV-CATL--P-STVAVTSVCWSPK-GKQLAVGK-----------------QNGTVV  217 (434)
T ss_dssp             SCTTEEEEEETTSCEEEEEESSSEEE-EEEE--C-GGGCEEEEEECTT-SSCEEEEE-----------------TTSCEE
T ss_pred             CCCCEEEEEECCCeEEEEEcCCCcce-eecc--C-CCCceeEEEEcCC-CCEEEEEc-----------------CCCcEE
Confidence            44666664 44444778888766332 1111  1 1234678999995 76555432                 247788


Q ss_pred             EEcCCCCeEEEeec-CCC-------CCceeEEccCCCEEEEEecCCC------eEEEEEecC
Q 048181          183 SYNPRSSQVTVLLR-NLT-------GPAGVAISVDSSFLLVSEFTGN------RTLKYWLRG  230 (310)
Q Consensus       183 ~~d~~~g~~~~~~~-~l~-------~pnGIa~~~dg~~Lyv~d~~~~------~I~~~~~~~  230 (310)
                      .+|.+ ++...... ...       ....|+|++++.++.+.....+      .+..+++..
T Consensus       218 iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          218 QYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             EEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            88876 43332221 111       3368889988765544444432      366666653

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.53  E-value=0.27  Score=44.69  Aligned_cols=199  Identities=14%  Similarity=0.117  Sum_probs=100.2

Q ss_pred             CCcceEEEcc--CCCEEEEEeCCC----eEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecC--
Q 048181           34 FGGESIAFEP--VGGAFYTGVADG----RILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA--  104 (310)
Q Consensus        34 ~~Pegia~d~--~G~l~~~d~~~g----~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~--  104 (310)
                      ....+|++|+  .+. +|+....+    .|++.+..+. ++.+.....      ..............+-..|++++.  
T Consensus        55 ~~v~~i~~dp~~~~~-l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~------~~~~~~~~~~~~~~~i~~l~~~~~~~  127 (394)
T 3b7f_A           55 HTIHHIVQDPREPER-MLMAARTGHLGPTVFRSDDGGGNWTEATRPPA------FNKAPEGETGRVVDHVFWLTPGHASE  127 (394)
T ss_dssp             SEEEEEEECSSSTTC-EEEEEEC--CCEEEEEESSTTSCCEECSBCCC------CCCCC----CCCCCEEEEEEECCTTS
T ss_pred             CceEEEEECCCCCCe-EEEEecCCCCCccEEEeCCCCCCceECCcccc------CCCcccccccccccceeEEEeCCCCC
Confidence            3578999998  566 45555455    7888766553 443211000      000000000001123346888642  


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEeeccC--C------------CccccCccceEEeCC-CCeEEEEcCCCccCcccee
Q 048181          105 TRQLYIADAYSGLLVVGPNGRLATQLATGA--E------------GQAFHFLDGLDVDQG-TGVVYFTDASGVYDFRTIV  169 (310)
Q Consensus       105 ~g~LyVad~~~gi~~id~~~~~~~~~~~~~--~------------g~~~~~pndvavd~~-~G~lyvtd~~~~~~~~~~~  169 (310)
                      .+.||+.....+|++.+..+..-+.+....  .            +........|++++. .+.+|+....         
T Consensus       128 ~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~---------  198 (394)
T 3b7f_A          128 PGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS---------  198 (394)
T ss_dssp             TTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET---------
T ss_pred             CCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC---------
Confidence            688998765667998876654444432110  0            001122357888863 3678887432         


Q ss_pred             EeeeecCCCceEEEEcCCCCeEEEeecCC-------------CCCceeEEccC-CCEEEEEecCCCeEEEEEecCCCCCc
Q 048181          170 KLNITNDSTGRLLSYNPRSSQVTVLLRNL-------------TGPAGVAISVD-SSFLLVSEFTGNRTLKYWLRGPRANS  235 (310)
Q Consensus       170 ~~~~~~~~~G~l~~~d~~~g~~~~~~~~l-------------~~pnGIa~~~d-g~~Lyv~d~~~~~I~~~~~~~~~~g~  235 (310)
                               +.|++.+....+.+.+...+             .....|+++++ .+.||+..  .+.|++.+-.+   .+
T Consensus       199 ---------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G---~t  264 (394)
T 3b7f_A          199 ---------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRRE---GV  264 (394)
T ss_dssp             ---------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTT---TE
T ss_pred             ---------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCC---Cc
Confidence                     34666654433333332211             11356888885 35788874  35577765332   22


Q ss_pred             eee--ecCCC----CCceeeeCCCCCCcEEEEE
Q 048181          236 FDI--INFQA----KPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       236 ~~~--~~l~g----~Pdgl~~d~~~dG~l~va~  262 (310)
                      .+.  ..++.    +.-.|++++...+.||++.
T Consensus       265 W~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          265 WKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             EECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred             ceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence            222  22332    1124677621157899985

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.51  E-value=0.66  Score=44.87  Aligned_cols=72  Identities=15%  Similarity=0.289  Sum_probs=42.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCC-ceeeEEEecCCCeEEEEeCCCcEEEEeC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICR-RTFGLALHYATRQLYIADAYSGLLVVGP  122 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~P~Gla~d~~~g~LyVad~~~gi~~id~  122 (310)
                      +|.+|+.. ..++|+.++...+.+.+........          .....+. ...|++++  +++||+......|+.+|.
T Consensus        68 ~g~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~----------~~~~~~~~~~~g~a~~--~~~v~~~t~dg~l~AlD~  134 (582)
T 1flg_A           68 DGVIYVTA-SYSRLFALDAKTGKRLWTYNHRLPD----------DIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNK  134 (582)
T ss_dssp             TTEEEEEE-TTTEEEEEESSSCCEEEEEECCCCT----------TCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEES
T ss_pred             CCEEEEEc-CCCCEEEEECCCCcEEEEEcCCCCc----------ccccccccCCCccEEE--CCEEEEEeCCCEEEEEEC
Confidence            55655544 4455999998755554443211100          0000111 12466774  789999877667999999


Q ss_pred             CCCeEE
Q 048181          123 NGRLAT  128 (310)
Q Consensus       123 ~~~~~~  128 (310)
                      ++|+..
T Consensus       135 ~TG~~~  140 (582)
T 1flg_A          135 NTGKVV  140 (582)
T ss_dssp             SSCCEE
T ss_pred             CCCCEE
Confidence            988764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.41  Score=43.42  Aligned_cols=157  Identities=9%  Similarity=0.026  Sum_probs=89.0

Q ss_pred             CcceEE--EccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-E
Q 048181           35 GGESIA--FEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-A  111 (310)
Q Consensus        35 ~Pegia--~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-a  111 (310)
                      ....++  +.+++.++++...++.|..++............                .........++++ +++++++ +
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------~~h~~~v~~~~~s-~~~~~l~s~  232 (437)
T 3gre_A          170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN----------------SPRHGAVSSICID-EECCVLILG  232 (437)
T ss_dssp             CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC----------------CGGGCCEEEEEEC-TTSCEEEEE
T ss_pred             CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc----------------CCCCCceEEEEEC-CCCCEEEEE
Confidence            344444  446788888888999999999864332211100                0012356689997 5666555 4


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCC---CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQG---TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~---~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      .....|..+|...++....... ...  ...+.+++.+.   ++.++++-.                 .+|.|..+|..+
T Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~-~~~--~~v~~~~~~~~~s~~~~~l~s~~-----------------~dg~i~iwd~~~  292 (437)
T 3gre_A          233 TTRGIIDIWDIRFNVLIRSWSF-GDH--APITHVEVCQFYGKNSVIVVGGS-----------------SKTFLTIWNFVK  292 (437)
T ss_dssp             ETTSCEEEEETTTTEEEEEEBC-TTC--EEEEEEEECTTTCTTEEEEEEES-----------------TTEEEEEEETTT
T ss_pred             cCCCeEEEEEcCCccEEEEEec-CCC--CceEEEEeccccCCCccEEEEEc-----------------CCCcEEEEEcCC
Confidence            4444488889877654322111 111  12345644431   355555543                 246677777665


Q ss_pred             CeEEEeecC---------------------------CCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          189 SQVTVLLRN---------------------------LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       189 g~~~~~~~~---------------------------l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      ++.......                           ...-..++++ +++ ++++-...+.|+.+++..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTC
T ss_pred             CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCC
Confidence            553322211                           0113568898 664 667777889999998864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.18  Score=48.15  Aligned_cols=188  Identities=11%  Similarity=-0.025  Sum_probs=98.8

Q ss_pred             CcceEEEccC------CCEEEEEeCCCeEEEEECCCceE----EeeeecCCCCccccCCCccccCCCCCCceeeEEEecC
Q 048181           35 GGESIAFEPV------GGAFYTGVADGRILKYQAPDGFT----DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYA  104 (310)
Q Consensus        35 ~Pegia~d~~------G~l~~~d~~~g~I~r~~~~g~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~  104 (310)
                      ...+++|.|+      +.++.+...++.|.-++......    .+....+           ...+.........+++. .
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p-----------~~~l~~h~~~v~sv~~s-~  276 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP-----------SLTLSLADSLITTFDFL-S  276 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC-----------SEEECCTTTCEEEEEES-S
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc-----------eEEEEcCCCCEEEEEec-C
Confidence            4567899886      56777788888888887653210    0000000           00011112345678886 4


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeE--EEeeccCCCccccCccce--EEeCCCC-eEEEEcCCCccCccceeEeeeecCCCc
Q 048181          105 TRQLYIADAYSGLLVVGPNGRLA--TQLATGAEGQAFHFLDGL--DVDQGTG-VVYFTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       105 ~g~LyVad~~~gi~~id~~~~~~--~~~~~~~~g~~~~~pndv--avd~~~G-~lyvtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      ++.|+.+.....|..+|..++..  ..+.    + +-...+++  +..+ +| ++++|-+.                 +|
T Consensus       277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~----~-H~~~V~sv~~~~s~-~g~~~laS~S~-----------------D~  333 (524)
T 2j04_B          277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQ----V-HDSYILSVSTAYSD-FEDTVVSTVAV-----------------DG  333 (524)
T ss_dssp             SSEEEEEETTSEEEEEETTBCSSCSEEEE----C-SSSCEEEEEEECCT-TSCCEEEEEET-----------------TS
T ss_pred             CCeEEEEeCCCEEEEEECCCCCCceEEee----c-ccccEEEEEEEcCC-CCCeEEEEecc-----------------CC
Confidence            56665555444577788775421  1111    1 11234566  3455 46 67666432                 46


Q ss_pred             eEEEEcCCCCeEE-EeecCCC--CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCC
Q 048181          180 RLLSYNPRSSQVT-VLLRNLT--GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQ  256 (310)
Q Consensus       180 ~l~~~d~~~g~~~-~~~~~l~--~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG  256 (310)
                      .+..+|..+++.. .+.....  ..+.++|+|+++. +++-...+.|..+++..... ...+.+-.+....+++.+  +|
T Consensus       334 tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp--~g  409 (524)
T 2j04_B          334 YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSR--LH  409 (524)
T ss_dssp             EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCS--SC
T ss_pred             eEEEEECCCCCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCC--CC
Confidence            7777776544321 1111121  2468999999984 66666677787777653211 111222222345566666  66


Q ss_pred             cEEEE
Q 048181          257 TFWEA  261 (310)
Q Consensus       257 ~l~va  261 (310)
                      .+.++
T Consensus       410 ~~l~S  414 (524)
T 2j04_B          410 PMVLA  414 (524)
T ss_dssp             CBCEE
T ss_pred             CeEEE
Confidence            54444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.15  E-value=0.087  Score=48.92  Aligned_cols=82  Identities=2%  Similarity=-0.165  Sum_probs=54.7

Q ss_pred             CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceee
Q 048181          199 TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIG  276 (310)
Q Consensus       199 ~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v  276 (310)
                      ...+.++|+|+...++++-+..+.|..+++...   ....  .........+++++  +|++.++....        +.+
T Consensus       150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~---~~~~~~~~~~~~v~~v~wsp--dg~~lasgs~d--------g~v  216 (434)
T 2oit_A          150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---VKVCATLPSTVAVTSVCWSP--KGKQLAVGKQN--------GTV  216 (434)
T ss_dssp             GSEEEEEECSSCTTEEEEEETTSCEEEEEESSS---EEEEEEECGGGCEEEEEECT--TSSCEEEEETT--------SCE
T ss_pred             CceEEEEECCCCCCEEEEEECCCeEEEEEcCCC---cceeeccCCCCceeEEEEcC--CCCEEEEEcCC--------CcE
Confidence            356899999984447777778889999988642   2211  22223467899999  99755544433        267


Q ss_pred             EEECCCCcEEEEEecCC
Q 048181          277 QRISAFGAVLDTISFEA  293 (310)
Q Consensus       277 ~~~~~~G~~~~~~~~p~  293 (310)
                      ..+|.+|+....+..+.
T Consensus       217 ~iwd~~~~~~~~~~~~~  233 (434)
T 2oit_A          217 VQYLPTLQEKKVIPCPP  233 (434)
T ss_dssp             EEECTTCCEEEEECCCT
T ss_pred             EEEccCCcccccccCCc
Confidence            88888887777766654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.2  Score=47.87  Aligned_cols=151  Identities=10%  Similarity=0.014  Sum_probs=89.3

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCc-e--EEeeeecCCCCccccCCCccccCCCCCCceeeE--EEecCCC-eE
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDG-F--TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGL--ALHYATR-QL  108 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gl--a~d~~~g-~L  108 (310)
                      ...+++|.+++ .++++..+|.|..++...+ .  ..+.                    .....-..+  ++ .++| .+
T Consensus       268 ~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~--------------------~H~~~V~sv~~~~-s~~g~~~  325 (524)
T 2j04_B          268 LITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQ--------------------VHDSYILSVSTAY-SDFEDTV  325 (524)
T ss_dssp             CEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEE--------------------CSSSCEEEEEEEC-CTTSCCE
T ss_pred             CEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEee--------------------cccccEEEEEEEc-CCCCCeE
Confidence            35678888754 6888889999999997632 1  1111                    111233466  34 3566 67


Q ss_pred             EEEeCCCc-EEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          109 YIADAYSG-LLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       109 yVad~~~g-i~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      +++-...+ |...|..+++. ..+.....   ....+.++++|+ +..+++-..                 ++.+..+|.
T Consensus       326 laS~S~D~tvklWD~~~~~~~~~~~~~~~---~~~v~~v~fsp~-~~~l~s~~~-----------------d~tv~lwd~  384 (524)
T 2j04_B          326 VSTVAVDGYFYIFNPKDIATTKTTVSRFR---GSNLVPVVYCPQ-IYSYIYSDG-----------------ASSLRAVPS  384 (524)
T ss_dssp             EEEEETTSEEEEECGGGHHHHCEEEEECS---CCSCCCEEEETT-TTEEEEECS-----------------SSEEEEEET
T ss_pred             EEEeccCCeEEEEECCCCCcccccccccc---cCcccceEeCCC-cCeEEEeCC-----------------CCcEEEEEC
Confidence            66544434 77778765432 11111111   112467999994 777766432                 245666676


Q ss_pred             CCCeE-EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          187 RSSQV-TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       187 ~~g~~-~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      .++.. ..+.......+.|+|+|+|+. +++-+..+.|..+++.
T Consensus       385 ~~~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          385 RAAFAVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAA  427 (524)
T ss_dssp             TCTTCCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSC
T ss_pred             cccccceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEech
Confidence            55543 333344445689999999984 5666778888877764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.77  E-value=0.83  Score=41.36  Aligned_cols=145  Identities=8%  Similarity=0.084  Sum_probs=74.8

Q ss_pred             ceeeEEEec-CCCeEEEEeCCC----cEEEEeCCCCeEEEeecc--CCCc-------cccCccceEEeCC--CCeEEEEc
Q 048181           95 RTFGLALHY-ATRQLYIADAYS----GLLVVGPNGRLATQLATG--AEGQ-------AFHFLDGLDVDQG--TGVVYFTD  158 (310)
Q Consensus        95 ~P~Gla~d~-~~g~LyVad~~~----gi~~id~~~~~~~~~~~~--~~g~-------~~~~pndvavd~~--~G~lyvtd  158 (310)
                      ....|++|+ ..++||++-...    +|++.+..+..-+.+...  +...       .+.....+++++.  .+.+|+..
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~  135 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT  135 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe
Confidence            456889983 268899875433    588876554433443221  1111       1112335778752  47888853


Q ss_pred             CCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecC-----------------CC--CCceeEEccC-CCEEEEEec
Q 048181          159 ASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRN-----------------LT--GPAGVAISVD-SSFLLVSEF  218 (310)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~-----------------l~--~pnGIa~~~d-g~~Lyv~d~  218 (310)
                      .                  .+.|++.+....+.+.+...                 ..  .-..|+++|. .+.||+...
T Consensus       136 ~------------------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~  197 (394)
T 3b7f_A          136 S------------------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS  197 (394)
T ss_dssp             E------------------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred             c------------------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence            2                  24578776543343433211                 00  1136888873 446888754


Q ss_pred             CCCeEEEEEecCCCCCceee--ec-----CC-------CCCceeeeCCCCC--CcEEEEEe
Q 048181          219 TGNRTLKYWLRGPRANSFDI--IN-----FQ-------AKPHNIKRNPGLL--QTFWEAAI  263 (310)
Q Consensus       219 ~~~~I~~~~~~~~~~g~~~~--~~-----l~-------g~Pdgl~~d~~~d--G~l~va~~  263 (310)
                      . +.|++..-.|   .+.+.  ..     +|       .....|++++  +  +.||++..
T Consensus       198 ~-ggl~~s~DgG---~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~--~~~~~l~vg~~  252 (394)
T 3b7f_A          198 S-GGVFESTDAG---TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHP--AAPDILYQQNH  252 (394)
T ss_dssp             T-BEEEEESSTT---SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECS--SSTTEEEEEET
T ss_pred             C-CCEEEECCCC---CCceECCCCccccccCCCccccCcceeEEEECC--CCCCEEEEEcC
Confidence            3 3466654322   12221  11     11       0134577877  5  78998764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.68  E-value=1  Score=39.73  Aligned_cols=188  Identities=11%  Similarity=0.008  Sum_probs=96.2

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      +.++++.+++.+|.+. ..+.|+|-...|+ ++....                   .......+++++ +++++|++...
T Consensus       124 ~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~-------------------~~~~~~~~~~~~-~~~~~~~~g~~  182 (327)
T 2xbg_A          124 PRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQ-------------------EAIGVMRNLNRS-PSGEYVAVSSR  182 (327)
T ss_dssp             EEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEEC-------------------SCCCCEEEEEEC-TTSCEEEEETT
T ss_pred             eEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeec-------------------CCCcceEEEEEc-CCCcEEEEECC
Confidence            4567766666655444 4667777654442 443220                   111234578886 57888876555


Q ss_pred             CcEEEEeCC-CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE-E
Q 048181          115 SGLLVVGPN-GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV-T  192 (310)
Q Consensus       115 ~gi~~id~~-~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~-~  192 (310)
                      ..+++-+.. +..-+.+.. ..   -....++++++ +|++|+...                  .|.+++.+.+.|+. +
T Consensus       183 G~~~~S~d~gG~tW~~~~~-~~---~~~~~~~~~~~-~g~~~~~~~------------------~G~~~~s~~D~G~tW~  239 (327)
T 2xbg_A          183 GSFYSTWEPGQTAWEPHNR-TT---SRRLHNMGFTP-DGRLWMIVN------------------GGKIAFSDPDNSENWG  239 (327)
T ss_dssp             SSEEEEECTTCSSCEEEEC-CS---SSCEEEEEECT-TSCEEEEET------------------TTEEEEEETTEEEEEC
T ss_pred             CcEEEEeCCCCCceeECCC-CC---CCccceeEECC-CCCEEEEeC------------------CceEEEecCCCCCeeE
Confidence            457776533 222233321 11   12456788888 488987643                  24555553221221 1


Q ss_pred             EeecC-CC---CCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-e---cCCCCCceeeeCCCCCCcEEEEEec
Q 048181          193 VLLRN-LT---GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-I---NFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       193 ~~~~~-l~---~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~---~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      .+... +.   .-..|++++++. +|++-. .+.|++ ..++..  +.+. .   .++..-..+.++.  ++.+|++...
T Consensus       240 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i~~-S~DgG~--tW~~~~~~~~~~~~~~~v~~~~--~~~~~~~G~~  312 (327)
T 2xbg_A          240 ELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGALLC-SQDGGQ--TWQQDVDVKKVPSNFYKILFFS--PDQGFILGQK  312 (327)
T ss_dssp             CCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCEEE-ESSTTS--SCEECGGGTTSSSCCCEEEEEE--TTEEEEECST
T ss_pred             eccCCcccCCcceEEEEecCCCE-EEEEeC-CCeEEE-eCCCCc--ccEEcCccCCCCCCeEEEEEEC--CCceEEEcCC
Confidence            11111 11   124677887765 666643 455543 334321  2222 1   1233345677766  6777766554


Q ss_pred             CCCCCCCCceeeEEECCCC
Q 048181          265 TRQPAGTPVPIGQRISAFG  283 (310)
Q Consensus       265 ~~~~~~~~~~~v~~~~~~G  283 (310)
                      +         .+.+++.+.
T Consensus       313 G---------~i~~~~~~~  322 (327)
T 2xbg_A          313 G---------ILLRYVTDL  322 (327)
T ss_dssp             T---------EEEEECCCC
T ss_pred             c---------eEEEEcCcc
Confidence            3         677777654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.68  E-value=0.87  Score=38.80  Aligned_cols=161  Identities=7%  Similarity=-0.022  Sum_probs=88.8

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-E
Q 048181           33 AFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-A  111 (310)
Q Consensus        33 ~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-a  111 (310)
                      ......+++.++|+++++...++.|..++...+......              ........+....+++.+.+..++. +
T Consensus       150 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~~~~  215 (318)
T 4ggc_A          150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP--------------LQTFTQHQGAVKAVAWCPWQSNVLATG  215 (318)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC--------------SEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred             cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc--------------eeeecccCCceEEEEecCCCCcEEEEE
Confidence            345677888889998888888898888876532110000              0000111223345666534444443 3


Q ss_pred             eCC-Cc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          112 DAY-SG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       112 d~~-~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      ... .+ |...+............     ......+++.+....++++..                ..+|.|..+|..++
T Consensus       216 ~~~~~~~i~lwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~sg----------------~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          216 GGTSDRHIRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHG----------------FAQNQLVIWKYPTM  274 (318)
T ss_dssp             ECTTTCEEEEEETTTCCEEEEEEC-----SSCEEEEEEETTTTEEEEEEC----------------TTTCCEEEEETTTC
T ss_pred             ecCCCCEEEEEecccccccccccc-----eeeeeeeeecccccceEEEEE----------------cCCCEEEEEECCCC
Confidence            322 23 55566665443322111     122456777775344443321                13577888887776


Q ss_pred             eEEEeecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          190 QVTVLLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       190 ~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      +......+ -..-+.|+|+|||++ +++-...+.|..+++.
T Consensus       275 ~~~~~l~gH~~~V~~l~~spdg~~-l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          275 AKVAELKGHTSRVLSLTMSPDGAT-VASAAADETLRLWRCF  314 (318)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSC-EEEEETTTEEEEECCS
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCE-EEEEecCCeEEEEECC
Confidence            65433332 334588999999984 5566677777777654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=95.26  E-value=1.5  Score=38.87  Aligned_cols=72  Identities=10%  Similarity=0.041  Sum_probs=47.7

Q ss_pred             CccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce-EEEEcCCCCeEEEeec---CCCCCceeEEccCCCEEEEE
Q 048181          141 FLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR-LLSYNPRSSQVTVLLR---NLTGPAGVAISVDSSFLLVS  216 (310)
Q Consensus       141 ~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~-l~~~d~~~g~~~~~~~---~l~~pnGIa~~~dg~~Lyv~  216 (310)
                      ..+.++++| +|++.+|-+                 .+|. +..+|..+++......   .-..-+.++|+|||++ +++
T Consensus       197 ~v~~~~~s~-~g~~l~s~s-----------------~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s  257 (355)
T 3vu4_A          197 PIKMVRLNR-KSDMVATCS-----------------QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK-LAV  257 (355)
T ss_dssp             CEEEEEECT-TSSEEEEEE-----------------TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCE-EEE
T ss_pred             ceEEEEECC-CCCEEEEEe-----------------CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCE-EEE
Confidence            345677777 366655533                 3476 7778877765543333   2345689999999984 556


Q ss_pred             ecCCCeEEEEEecCC
Q 048181          217 EFTGNRTLKYWLRGP  231 (310)
Q Consensus       217 d~~~~~I~~~~~~~~  231 (310)
                      -+..+.|..+++...
T Consensus       258 ~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          258 VSDKWTLHVFEIFND  272 (355)
T ss_dssp             EETTCEEEEEESSCC
T ss_pred             EECCCEEEEEEccCC
Confidence            667788888888643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.19  E-value=0.97  Score=40.76  Aligned_cols=52  Identities=13%  Similarity=0.043  Sum_probs=32.1

Q ss_pred             CCCceEEEEcCCCCeEEE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          176 DSTGRLLSYNPRSSQVTV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      ..+|.|..+|..+++... ....-..-+.++|+|||++|.++.  .+.+..+.+.
T Consensus       336 s~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as--~~Gv~lvrL~  388 (393)
T 4gq1_A          336 SQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT--EGSVLLTRLM  388 (393)
T ss_dssp             TTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE--SSEEEEEEEG
T ss_pred             CCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEEe
Confidence            346888888877664432 222223347999999999766553  3445545544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.18  E-value=2.7  Score=41.42  Aligned_cols=142  Identities=13%  Similarity=0.169  Sum_probs=75.1

Q ss_pred             eeeEEEecCCCe-EEEEeC-----CCcEEEEeCCCC--e-EEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCcc
Q 048181           96 TFGLALHYATRQ-LYIADA-----YSGLLVVGPNGR--L-ATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFR  166 (310)
Q Consensus        96 P~Gla~d~~~g~-LyVad~-----~~gi~~id~~~~--~-~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~  166 (310)
                      -.++.++ ++|+ |+++..     ...|+.+|.+++  + .+.+......  .   ... ++++++.||+.....     
T Consensus       270 ~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~---~~~-~~~dg~~l~~~s~~~-----  337 (741)
T 1yr2_A          270 GHGASVS-SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA--Q---WDF-VDGVGDQLWFVSGDG-----  337 (741)
T ss_dssp             EEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS--C---EEE-EEEETTEEEEEECTT-----
T ss_pred             EEEEEEC-CCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc--e---EEE-EeccCCEEEEEECCC-----
Confidence            3577886 5664 544432     235888888776  4 4444332211  1   111 234456777754321     


Q ss_pred             ceeEeeeecCCCceEEEEcCCCC--eEEEeecCCC-CCceeEEccCCCEEEEEecCCC--eEEEEEecCCCCCceeeecC
Q 048181          167 TIVKLNITNDSTGRLLSYNPRSS--QVTVLLRNLT-GPAGVAISVDSSFLLVSEFTGN--RTLKYWLRGPRANSFDIINF  241 (310)
Q Consensus       167 ~~~~~~~~~~~~G~l~~~d~~~g--~~~~~~~~l~-~pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~~~~~g~~~~~~l  241 (310)
                               .++++|+++|.+++  +.+.+..... ...+++++  ++.|+++....+  +|+.+++++.   ..+...+
T Consensus       338 ---------~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~---~~~~l~~  403 (741)
T 1yr2_A          338 ---------APLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGK---PAGAVSL  403 (741)
T ss_dssp             ---------CTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSC---EEEECBC
T ss_pred             ---------CCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC---ceeeccC
Confidence                     24578999998763  4455443221 23466776  446777765444  6777776542   1211222


Q ss_pred             C--CCCceeeeCCCCCCc-EEEEEecC
Q 048181          242 Q--AKPHNIKRNPGLLQT-FWEAAIIT  265 (310)
Q Consensus       242 ~--g~Pdgl~~d~~~dG~-l~va~~~~  265 (310)
                      +  +...++.+++  +|. |+++....
T Consensus       404 ~~~~~v~~~~~s~--d~~~l~~~~ss~  428 (741)
T 1yr2_A          404 PGIGSASGLSGRP--GDRHAYLSFSSF  428 (741)
T ss_dssp             SSSCEEEEEECCB--TCSCEEEEEEET
T ss_pred             CCCeEEEEeecCC--CCCEEEEEEcCC
Confidence            2  3345666776  664 66554443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.76  E-value=2.3  Score=38.53  Aligned_cols=192  Identities=10%  Similarity=0.014  Sum_probs=97.9

Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEE
Q 048181           40 AFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLV  119 (310)
Q Consensus        40 a~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~  119 (310)
                      ++..+|+.+++...++.|..++...+......                  .........++++  +..|+.+.....|..
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~------------------~~h~~~v~~l~~~--~~~l~sg~~dg~i~v  197 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL------------------TGHTGSVLCLQYD--ERVIITGSSDSTVRV  197 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEE------------------CCCSSCEEEEECC--SSEEEEEETTSCEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEE------------------cCCCCcEEEEEEC--CCEEEEEcCCCeEEE
Confidence            44457888888889999999987643221111                  0111233456652  344444544445888


Q ss_pred             EeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE----Eee
Q 048181          120 VGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT----VLL  195 (310)
Q Consensus       120 id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~----~~~  195 (310)
                      +|.++++......   + +-.....+++++  +.++.+.                  .+|.|..+|..+++..    ...
T Consensus       198 wd~~~~~~~~~~~---~-h~~~v~~l~~~~--~~l~s~s------------------~dg~i~vwd~~~~~~~~~~~~~~  253 (435)
T 1p22_A          198 WDVNTGEMLNTLI---H-HCEAVLHLRFNN--GMMVTCS------------------KDRSIAVWDMASPTDITLRRVLV  253 (435)
T ss_dssp             EESSSCCEEEEEC---C-CCSCEEEEECCT--TEEEEEE------------------TTSCEEEEECSSSSCCEEEEEEC
T ss_pred             EECCCCcEEEEEc---C-CCCcEEEEEEcC--CEEEEee------------------CCCcEEEEeCCCCCCceeeeEec
Confidence            8887765432221   1 112344566653  4443332                  2466777776554321    222


Q ss_pred             cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCce
Q 048181          196 RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVP  274 (310)
Q Consensus       196 ~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~  274 (310)
                      ..-...+.+++  +++.| ++-+..+.|..+++....  .... ..-......+.++.   ..+.++...+         
T Consensus       254 ~~~~~v~~~~~--~~~~l-~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg---------  316 (435)
T 1p22_A          254 GHRAAVNVVDF--DDKYI-VSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYRD---RLVVSGSSDN---------  316 (435)
T ss_dssp             CCSSCEEEEEE--ETTEE-EEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEET---TEEEEEETTS---------
T ss_pred             CCCCcEEEEEe--CCCEE-EEEeCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEeCC---CEEEEEeCCC---------
Confidence            22223456666  56644 555667889888875321  1111 21122234455543   2334443332         


Q ss_pred             eeEEECC-CCcEEEEEecC
Q 048181          275 IGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       275 ~v~~~~~-~G~~~~~~~~p  292 (310)
                      .+..+|. .|+.+..+...
T Consensus       317 ~i~iwd~~~~~~~~~~~~h  335 (435)
T 1p22_A          317 TIRLWDIECGACLRVLEGH  335 (435)
T ss_dssp             CEEEEETTTCCEEEEECCC
T ss_pred             eEEEEECCCCCEEEEEeCC
Confidence            5666674 46666666543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.38  E-value=1.9  Score=42.78  Aligned_cols=154  Identities=12%  Similarity=0.019  Sum_probs=79.2

Q ss_pred             cceEEEc-cCCC-EEEEEeCCC----eEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           36 GESIAFE-PVGG-AFYTGVADG----RILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        36 Pegia~d-~~G~-l~~~d~~~g----~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      -.+++|. |||+ +.|+...+|    +|+.++.+++ ... .                   ........++++.+++..|
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~-------------------~~~~~~~~~~~WspDg~~l  235 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-A-------------------DKVSGTNGEIVWGPDHTSL  235 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-C-------------------CCEEEECSCCEECSSTTEE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-C-------------------ccccCceeeEEEecCCCEE
Confidence            3457888 8886 445544333    3777777654 210 0                   0000012356776333366


Q ss_pred             EEEeCC-----CcEEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          109 YIADAY-----SGLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       109 yVad~~-----~gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                      |++...     ..|++++..++..  ..+....+ ..  +--++.+++++..|+++....               ....|
T Consensus       236 ~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~-~~--~~~~~~~SpDg~~l~~~~~~~---------------~~~~l  297 (751)
T 2xe4_A          236 FYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHN-PL--FSAFMYKAADTNTLCIGSQSP---------------ETAEV  297 (751)
T ss_dssp             EEEEECTTCCEEEEEEEETTSCGGGCEEEEECCC-TT--CEEEEEECTTSSEEEEEEECS---------------SCEEE
T ss_pred             EEEEECCCCCCCEEEEEECCCCchhcEEEEecCC-Cc--eEEEEEECCCCCEEEEEecCC---------------CCceE
Confidence            655321     2488888876532  22222111 12  224678888533455553221               13468


Q ss_pred             EEEcCCCC--eE--EEeecCCCCCceeEEccC---CCEEEEE-ec---CCCeEEEEEecC
Q 048181          182 LSYNPRSS--QV--TVLLRNLTGPAGVAISVD---SSFLLVS-EF---TGNRTLKYWLRG  230 (310)
Q Consensus       182 ~~~d~~~g--~~--~~~~~~l~~pnGIa~~~d---g~~Lyv~-d~---~~~~I~~~~~~~  230 (310)
                      +.+|.+++  +.  +.+...   ..+..++++   |+.||+. +.   .+.+|+++++++
T Consensus       298 ~~~d~~~~~~~~~~~~l~~~---~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          298 HLLDLRKGNAHNTLEIVRPR---EKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEESSSCTTCCCEEESSCC---CTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EEEECCCCCCCceeEEeecC---CCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            88887654  33  444432   234445554   7766665 33   345899998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=94.16  E-value=3.2  Score=37.62  Aligned_cols=206  Identities=11%  Similarity=0.060  Sum_probs=103.6

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ...+++++  ++++++...++.|..++...+......                  .........++++  ++.++++...
T Consensus       161 ~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~------------------~~h~~~v~~~~~~--~~~l~s~s~d  218 (445)
T 2ovr_B          161 GVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL------------------YGHTSTVRCMHLH--EKRVVSGSRD  218 (445)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             CEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE------------------CCCCCcEEEEEec--CCEEEEEeCC
Confidence            34455554  456677777777777776643221110                  0111233466664  4556555555


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL  194 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~  194 (310)
                      ..|..+|..+++.......    .....+.++++  +..++.+.                  .+|.+..+|..+++....
T Consensus       219 g~i~~wd~~~~~~~~~~~~----~~~~v~~~~~~--~~~l~~~~------------------~dg~i~iwd~~~~~~~~~  274 (445)
T 2ovr_B          219 ATLRVWDIETGQCLHVLMG----HVAAVRCVQYD--GRRVVSGA------------------YDFMVKVWDPETETCLHT  274 (445)
T ss_dssp             SEEEEEESSSCCEEEEEEC----CSSCEEEEEEC--SSCEEEEE------------------TTSCEEEEEGGGTEEEEE
T ss_pred             CEEEEEECCCCcEEEEEcC----CcccEEEEEEC--CCEEEEEc------------------CCCEEEEEECCCCcEeEE
Confidence            5577778776543322211    11223455553  23333332                  246777777766654333


Q ss_pred             ec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCC
Q 048181          195 LR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTP  272 (310)
Q Consensus       195 ~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~  272 (310)
                      .. .-.....+++  +++++ ++-...+.|..+++....  .... ..-......+.++.    ++.++....       
T Consensus       275 ~~~~~~~v~~~~~--~~~~l-~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~----~~l~~~~~d-------  338 (445)
T 2ovr_B          275 LQGHTNRVYSLQF--DGIHV-VSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELKD----NILVSGNAD-------  338 (445)
T ss_dssp             ECCCSSCEEEEEE--CSSEE-EEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEET----TEEEEEETT-------
T ss_pred             ecCCCCceEEEEE--CCCEE-EEEeCCCeEEEEECCCCC--EEEEEcCCcccEEEEEEeC----CEEEEEeCC-------
Confidence            32 2223456666  67754 455567888888875321  1111 11122334455543    444443332       


Q ss_pred             ceeeEEECC-CCcEEEEEecCCCccccceeEEE
Q 048181          273 VPIGQRISA-FGAVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       273 ~~~v~~~~~-~G~~~~~~~~p~~~~~~~~t~~~  304 (310)
                       +.+..+|. +|+.+..+..+.. +...|+.+.
T Consensus       339 -g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~  369 (445)
T 2ovr_B          339 -STVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQ  369 (445)
T ss_dssp             -SCEEEEETTTCCEEEEECSTTS-CSSCEEEEE
T ss_pred             -CeEEEEECCCCcEEEEEccCCC-CCCCEEEEE
Confidence             25666774 5777777766543 334555544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=93.35  E-value=4.3  Score=36.39  Aligned_cols=79  Identities=9%  Similarity=0.015  Sum_probs=46.2

Q ss_pred             CCCCCCcceEEEcc--------CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           30 PPKAFGGESIAFEP--------VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        30 ~~~~~~Pegia~d~--------~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      .|.-..-.+++|.|        +|+++.+...++.|.-++...+.......                  ........+++
T Consensus       133 ~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~------------------~~~~~v~~v~~  194 (393)
T 4gq1_A          133 SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY------------------PLSSPGISVQF  194 (393)
T ss_dssp             TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE------------------ECSSCEEEEEE
T ss_pred             CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec------------------CCCCCcEEEEE
Confidence            33334567889976        78888888888988888864332211100                  11223457888


Q ss_pred             ecCCCeEEE-EeCCCcEEEEeCCCCe
Q 048181          102 HYATRQLYI-ADAYSGLLVVGPNGRL  126 (310)
Q Consensus       102 d~~~g~LyV-ad~~~gi~~id~~~~~  126 (310)
                      ++.++++++ +.....|..+|..+++
T Consensus       195 ~p~~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          195 RPSNPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred             CCCCCceEEecCCCCEEEEEECCCCc
Confidence            744444444 4444447777876654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.77  E-value=0.4  Score=46.09  Aligned_cols=90  Identities=9%  Similarity=0.061  Sum_probs=62.4

Q ss_pred             EEEEcCCC----C-eEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCC------CC-C--ceeeec--CCCC
Q 048181          181 LLSYNPRS----S-QVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGP------RA-N--SFDIIN--FQAK  244 (310)
Q Consensus       181 l~~~d~~~----g-~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~------~~-g--~~~~~~--l~g~  244 (310)
                      +-.+|...    + .+...+.--..|-|+-++|||++++++.....++.+|++..-      +. .  ...+..  +.-.
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG  379 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG  379 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence            55677643    1 233444455689999999999999999999999999997620      00 0  000111  2235


Q ss_pred             CceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEEC
Q 048181          245 PHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRIS  280 (310)
Q Consensus       245 Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~  280 (310)
                      |-..++|.  +|+.|.+++.-.        +|+++|
T Consensus       380 PlHt~Fd~--~G~aYTtlfidS--------qvvkWn  405 (638)
T 3sbq_A          380 PLHTTFDG--RGNAYTTLFIDS--------QVVKWN  405 (638)
T ss_dssp             EEEEEECS--SSEEEEEETTTT--------EEEEEE
T ss_pred             ccEEEECC--CCceEeeeeecc--------eEEEEe
Confidence            99999999  999999998763        566655

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.44  E-value=3.3  Score=37.13  Aligned_cols=25  Identities=8%  Similarity=0.202  Sum_probs=19.0

Q ss_pred             CEEEEEeCCCeEEEEECCCceEEee
Q 048181           46 GAFYTGVADGRILKYQAPDGFTDFA   70 (310)
Q Consensus        46 ~l~~~d~~~g~I~r~~~~g~~~~~~   70 (310)
                      .++|+...+|+|+.++.+.+...+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~   35 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWS   35 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEE
Confidence            4577778899999999876666554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=92.26  E-value=6.3  Score=35.56  Aligned_cols=150  Identities=13%  Similarity=0.110  Sum_probs=81.1

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ...++++  +++++++...+|.|..++...+......                  .........++++  ++.++.+...
T Consensus       175 ~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~------------------~~h~~~v~~l~~~--~~~l~s~s~d  232 (435)
T 1p22_A          175 SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL------------------IHHCEAVLHLRFN--NGMMVTCSKD  232 (435)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE------------------CCCCSCEEEEECC--TTEEEEEETT
T ss_pred             cEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE------------------cCCCCcEEEEEEc--CCEEEEeeCC
Confidence            3445555  5777888888888888887643221110                  0112234566663  4556555555


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL  194 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~  194 (310)
                      ..|..+|..++..........+ .-...+.++++  +..++.+.                  .+|.+..+|..+++....
T Consensus       233 g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~------------------~dg~i~vwd~~~~~~~~~  291 (435)
T 1p22_A          233 RSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFD--DKYIVSAS------------------GDRTIKVWNTSTCEFVRT  291 (435)
T ss_dssp             SCEEEEECSSSSCCEEEEEECC-CSSCEEEEEEE--TTEEEEEE------------------TTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEeCCCCCCceeeeEecC-CCCcEEEEEeC--CCEEEEEe------------------CCCeEEEEECCcCcEEEE
Confidence            5577788765432211111111 11234556664  23444332                  246788888776655433


Q ss_pred             ec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          195 LR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       195 ~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      .. .-.....++++  ++ ++++-...+.|..+++..
T Consensus       292 ~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          292 LNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             EECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTT
T ss_pred             EcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCC
Confidence            32 22334556664  55 455666788899898763

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=92.06  E-value=5.8  Score=34.75  Aligned_cols=199  Identities=10%  Similarity=0.129  Sum_probs=101.0

Q ss_pred             eeeeecceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCc
Q 048181           17 MVFSIPTFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRR   95 (310)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   95 (310)
                      ++.+-.+-+.+.++.. ....+|++..++.+|++. ..+.|+|-...|+ ++.....                .......
T Consensus        20 s~d~g~~W~~~~~~~~-~~~~~v~~~~~~~~~~~G-~~g~i~~s~DgG~tW~~~~~~----------------~~~~~~~   81 (327)
T 2xbg_A           20 PALDYNPWEAIQLPTT-ATILDMSFIDRHHGWLVG-VNATLMETRDGGQTWEPRTLV----------------LDHSDYR   81 (327)
T ss_dssp             CBCSSCCEEEEECSCS-SCEEEEEESSSSCEEEEE-TTTEEEEESSTTSSCEECCCC----------------CSCCCCE
T ss_pred             cCCCCCCceEeecCCC-CcEEEEEECCCCcEEEEc-CCCeEEEeCCCCCCCeECCCC----------------CCCCCcc
Confidence            3444455566666643 356788887677766655 4677877654442 3332100                0001123


Q ss_pred             eeeEEEecCCCeEEEEeCCCcEEEEeCCCCeE-EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181           96 TFGLALHYATRQLYIADAYSGLLVVGPNGRLA-TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus        96 P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~-~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      -.+|+++ + +++|++.....|++ ..++|+. +.+... ...+ ..+.++++.+ ++++|+...               
T Consensus        82 ~~~i~~~-~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~-~~~~-~~~~~i~~~~-~~~~~~~~~---------------  140 (327)
T 2xbg_A           82 FNSVSFQ-G-NEGWIVGEPPIMLH-TTDGGQSWSQIPLD-PKLP-GSPRLIKALG-NGSAEMITN---------------  140 (327)
T ss_dssp             EEEEEEE-T-TEEEEEEETTEEEE-ESSTTSSCEECCCC-TTCS-SCEEEEEEEE-TTEEEEEET---------------
T ss_pred             EEEEEec-C-CeEEEEECCCeEEE-ECCCCCCceECccc-cCCC-CCeEEEEEEC-CCCEEEEeC---------------
Confidence            4578886 3 78888743334555 4454443 332211 0001 1245677766 488887642               


Q ss_pred             cCCCceEEEEcCCCCeEEEeecCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeC
Q 048181          175 NDSTGRLLSYNPRSSQVTVLLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRN  251 (310)
Q Consensus       175 ~~~~G~l~~~d~~~g~~~~~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d  251 (310)
                         .|.|++-+-....-+.+.... ....+++++++++ +|++. ..+.+++-+-.+.  ...+.  ...+.....++++
T Consensus       141 ---~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~d~gG--~tW~~~~~~~~~~~~~~~~~  213 (327)
T 2xbg_A          141 ---VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTWEPGQ--TAWEPHNRTTSRRLHNMGFT  213 (327)
T ss_dssp             ---TCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEECTTC--SSCEEEECCSSSCEEEEEEC
T ss_pred             ---CccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEeCCCC--CceeECCCCCCCccceeEEC
Confidence               245666543222333333221 1346788998886 44433 3456666542211  11221  1112234567777


Q ss_pred             CCCCCcEEEEEe
Q 048181          252 PGLLQTFWEAAI  263 (310)
Q Consensus       252 ~~~dG~l~va~~  263 (310)
                      +  +|.+|++..
T Consensus       214 ~--~g~~~~~~~  223 (327)
T 2xbg_A          214 P--DGRLWMIVN  223 (327)
T ss_dssp             T--TSCEEEEET
T ss_pred             C--CCCEEEEeC
Confidence            7  788887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=90.73  E-value=6.9  Score=38.78  Aligned_cols=98  Identities=9%  Similarity=0.023  Sum_probs=54.2

Q ss_pred             CccceEEe-CCCCe-EEEE-cCCCccCccceeEeeeecCCCceEEEEcCCCC-eEEEeecCCC-CCceeEEccCCCEEEE
Q 048181          141 FLDGLDVD-QGTGV-VYFT-DASGVYDFRTIVKLNITNDSTGRLLSYNPRSS-QVTVLLRNLT-GPAGVAISVDSSFLLV  215 (310)
Q Consensus       141 ~pndvavd-~~~G~-lyvt-d~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g-~~~~~~~~l~-~pnGIa~~~dg~~Lyv  215 (310)
                      ...+.+++ |+ |+ |.++ +...              .....|+.+|.+++ +.  +.+.+. ...+++|+|||+.||+
T Consensus       175 ~~~~~~~S~PD-G~~lAy~~~~~G--------------~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y  237 (751)
T 2xe4_A          175 DVMEVKPAPPE-HDLVAFSVDMSG--------------NEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFY  237 (751)
T ss_dssp             EEEEEEECTTT-TCEEEEEEESSS--------------SSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEE
T ss_pred             EEeeeEecCCC-CCEEEEEEeCCC--------------CceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEE
Confidence            45578899 95 64 4444 3221              11235888998877 52  111111 1358999999988887


Q ss_pred             EecC-C---CeEEEEEecCCCCCceeeecCC--CCCceeeeCCCCCCc
Q 048181          216 SEFT-G---NRTLKYWLRGPRANSFDIINFQ--AKPHNIKRNPGLLQT  257 (310)
Q Consensus       216 ~d~~-~---~~I~~~~~~~~~~g~~~~~~l~--g~Pdgl~~d~~~dG~  257 (310)
                      +... .   .+|+++++.++......+...+  .+--++.+++  ||.
T Consensus       238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~  283 (751)
T 2xe4_A          238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTN  283 (751)
T ss_dssp             EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSS
T ss_pred             EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCC
Confidence            7542 1   4788888865321111221111  2223456777  775

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=90.60  E-value=9.4  Score=34.39  Aligned_cols=51  Identities=20%  Similarity=0.135  Sum_probs=33.9

Q ss_pred             CCceEEEEcCCCCeEEEeec-CCCCCc-eeEEccCCCEEEEEecCCCeEEEEEe
Q 048181          177 STGRLLSYNPRSSQVTVLLR-NLTGPA-GVAISVDSSFLLVSEFTGNRTLKYWL  228 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~-~l~~pn-GIa~~~dg~~Lyv~d~~~~~I~~~~~  228 (310)
                      .+|.|..+|..+++...... ....+. .++|+|||++ +++-+..+.|+.+++
T Consensus       303 ~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~-LaSGS~D~TIklWd~  355 (356)
T 2w18_A          303 TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH-LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE-EEEEECCCcEEEecC
Confidence            45788888988887554443 222344 4899999985 456667777776654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=89.74  E-value=0.47  Score=42.81  Aligned_cols=59  Identities=10%  Similarity=0.186  Sum_probs=33.1

Q ss_pred             CCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          151 TGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       151 ~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      ++.+|++..                  +|.|+.+|..+|+..-.... .......+..+++ +|++.+..+.|+.++..
T Consensus         9 ~~~v~~gs~------------------dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            9 ETLLFVSTL------------------DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             TTEEEEEET------------------TSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC---
T ss_pred             CCEEEEEcC------------------CCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECC
Confidence            588888753                  36788899888876432222 2223333445564 67777778888888873

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=85.33  E-value=20  Score=32.58  Aligned_cols=185  Identities=11%  Similarity=0.048  Sum_probs=92.3

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      ...-+++.+...+++++..++-+ .++.+.-...+. .....+.       .....+... +..|++|  +..|+|+ ..
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~-v~~~~~l~~~~~-~~~~~~~-------~~~~~~lp~-V~~l~fd--~~~L~v~-~~  105 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAV-VGELQLLRDHIT-SDSTPLT-------FKWEKEIPD-VIFVCFH--GDQVLVS-TR  105 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEE-EEEHHHHHHHHH-SSSCCCC-------CSEEEECTT-EEEEEEE--TTEEEEE-ES
T ss_pred             cccEEEEcCCCCEEEEeCCCEEE-EEEhhHhhhhhc-ccccccc-------ceEEeeCCC-eeEEEEC--CCEEEEE-cC
Confidence            35568899988888888766433 354321000000 0000000       000011122 7788883  6788888 34


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEe
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVL  194 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~  194 (310)
                      .+|..+|..+-.......... .+   .+++...+  .++.+.                  ..+|.|+.+|.+++....+
T Consensus       106 ~~l~v~dv~sl~~~~~~~~~~-~~---v~~i~~~~--p~~av~------------------~~dG~L~v~dl~~~~~~~~  161 (388)
T 1xip_A          106 NALYSLDLEELSEFRTVTSFE-KP---VFQLKNVN--NTLVIL------------------NSVNDLSALDLRTKSTKQL  161 (388)
T ss_dssp             SEEEEEESSSTTCEEEEEECS-SC---EEEEEECS--SEEEEE------------------ETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEEchhhhccCccceee-cc---eeeEEecC--CCEEEE------------------ECCCCEEEEEccCCccccc
Confidence            468888865422111111111 11   23433332  122222                  2357788887766655443


Q ss_pred             ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCC-ceee------ec---CCCCCceeeeCCCCCCcEEEEEec
Q 048181          195 LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRAN-SFDI------IN---FQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       195 ~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g-~~~~------~~---l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ..   ....++|+|+|  +++ -..++.+..|++++.... ..++      ..   -...+..|.+-+  ++.+.++-..
T Consensus       162 ~~---~Vs~v~WSpkG--~~v-g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~--~~~flv~y~~  233 (388)
T 1xip_A          162 AQ---NVTSFDVTNSQ--LAV-LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS--PQDFLAVFGN  233 (388)
T ss_dssp             EE---SEEEEEECSSE--EEE-EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS--SSEEEEEEEC
T ss_pred             cC---CceEEEEcCCc--eEE-EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec--CCeEEEEEcC
Confidence            33   45789999999  333 345677888887653210 1111      00   123356677777  7666655443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=84.54  E-value=30  Score=33.36  Aligned_cols=128  Identities=13%  Similarity=0.050  Sum_probs=71.3

Q ss_pred             CcceEEEcc-CCCEEEEEeCC-----------CeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           35 GGESIAFEP-VGGAFYTGVAD-----------GRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        35 ~Pegia~d~-~G~l~~~d~~~-----------g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      .+...++.+ +|.+|+.+-.+           ..++.+++... ++.+...                ..+......+.++
T Consensus       187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~----------------~~~~~~~~~~~~~  250 (656)
T 1k3i_A          187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT----------------VTKHDMFCPGISM  250 (656)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE----------------ECSCCCSSCEEEE
T ss_pred             CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc----------------CCCCCCccccccC
Confidence            355677776 78877775321           14677777632 3222110                0112223335666


Q ss_pred             ecCCCeEEEEeCCC--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCc
Q 048181          102 HYATRQLYIADAYS--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       102 d~~~g~LyVad~~~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      . .+|+|||.-...  .+.++|+.+++-+.+.. .....  .-..+++.+ +|+||+.-....           ......
T Consensus       251 ~-~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-~~~~R--~~~s~~~~~-dg~iyv~GG~~~-----------~~~~~~  314 (656)
T 1k3i_A          251 D-GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-MQVAR--GYQSSATMS-DGRVFTIGGSWS-----------GGVFEK  314 (656)
T ss_dssp             C-TTSCEEEECSSSTTCEEEEEGGGTEEEECCC-CSSCC--SSCEEEECT-TSCEEEECCCCC-----------SSSCCC
T ss_pred             C-CCCCEEEeCCCCCCceEEecCcCCceeECCC-CCccc--cccceEEec-CCeEEEEeCccc-----------CCcccc
Confidence            3 689999985432  49999998876655432 11111  123456666 499998754210           001124


Q ss_pred             eEEEEcCCCCeEEEe
Q 048181          180 RLLSYNPRSSQVTVL  194 (310)
Q Consensus       180 ~l~~~d~~~g~~~~~  194 (310)
                      .+++||+.+++.+.+
T Consensus       315 ~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          315 NGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CEEEEETTTTEEEEE
T ss_pred             cceEeCCCCCcceeC
Confidence            688999988876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	1e-10
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	8e-07
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	0.002

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 59.4 bits (143), Expect = 1e-10
 Identities = 30/301 (9%), Positives = 75/301 (24%), Gaps = 33/301 (10%)

Query: 34  FGGESIAFEPVGGAFY-TGVADGRILKYQAPDGFTDFAFT-------TPTRSKAVCDGTT 85
            G E +   P G AF  +G+    I+ +  PD                 +  + + +   
Sbjct: 35  NGSEDLEILPNGLAFISSGLKYPGIMSFD-PDKSGKILLMDLNEKEPAVSELEIIGNTLD 93

Query: 86  NLDLGPI---CRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFL 142
                P            ++        + +   +       + +         +    +
Sbjct: 94  ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK-SLLHLKTIRHKLLPSV 152

Query: 143 DGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPA 202
           + +            D   +  +    ++++    +          + V V+        
Sbjct: 153 NDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV---TYYSPNDVRVVAEGFDFAN 209

Query: 203 GVAISVDSSFLLVSEFTGNRTLKYWLRGPRA-NSFDIINFQAKPHNIKRNPGLLQTFWEA 261
           G+ IS D  ++ ++E   ++   Y            +++F     NI  +P         
Sbjct: 210 GINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV--TGDLWV 267

Query: 262 AIITRQ-----------PAGTPVPIGQRISAFGAVLDTISFE-AQYSTTPISEVQPFGGA 309
                            P    + I   +S    V    +           +    + G 
Sbjct: 268 GCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVLQG--STVAAVYKGK 325

Query: 310 L 310
           L
Sbjct: 326 L 326

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 47.7 bits (112), Expect = 8e-07
 Identities = 41/224 (18%), Positives = 68/224 (30%), Gaps = 35/224 (15%)

Query: 22  PTFTKIL--FPPKAFGGESIAFEPVG-------GAFYTGVADGRILKYQAPDGFTDFAFT 72
           P FTK+    P    G E   F+  G            G   G IL+     G       
Sbjct: 8   PLFTKVTEDIP----GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK 63

Query: 73  TPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLAT 132
                          ++        G        QL++AD   GLLVV  +G        
Sbjct: 64  P--------------EVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKK 109

Query: 133 GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT 192
            +EG+     +    D   G ++ T  +   +           +  G +  +      + 
Sbjct: 110 DSEGRRMQGCNDCAFDY-EGNLWITAPA--GEVAPADYTRSMQEKFGSIYCFTTDGQMIQ 166

Query: 193 VLLRNLTGPAGVAISVDSS----FLLVSEFTGNRTLKYWLRGPR 232
           V       P G+A+   +      L+V+E    +   Y ++GP 
Sbjct: 167 V-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA 209

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 13/105 (12%)

Query: 144 GLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAG 203
            LD +  +  +Y++D S     R I         + +L   +  SS  TV+ R++  P G
Sbjct: 34  ALDTEVASNRIYWSDLSQ----RMI--------CSTQLDRAHGVSSYDTVISRDIQAPDG 81

Query: 204 VAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNI 248
           +A+    S +  ++           +G +  +    N   KP  I
Sbjct: 82  LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-KPRAI 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	100.0
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	100.0
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	100.0
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.94
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.93
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.89
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.88
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.83
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.78
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.73
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.7
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.69
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.41
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.34
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.25
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.24
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	99.12
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.07
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.02
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.02
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.02
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.75
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.67
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.61
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.6
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.56
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.52
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.47
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.46
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.43
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.42
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.42
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.39
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.34
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	98.32
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.23
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.21
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.17
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.15
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.1
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.02
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.02
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.01
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.88
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.77
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.74
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.48
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.41
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.2
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.08
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.01
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.62
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.59
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.47
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.29
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.09
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.01
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.64
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.51
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.42
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	95.2
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.12
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.09
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.07
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	94.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.77
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.75
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.67
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.41
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	93.98
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	93.72
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	92.54
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.24
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	92.01
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	91.4
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	88.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.07
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	84.91
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	84.58
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	83.51
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	83.49
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	82.49

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=6.7e-33  Score=250.81  Aligned_cols=217  Identities=19%  Similarity=0.243  Sum_probs=173.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ...||++||++|+|||+|+.+++|+|++++++.. .+.                   ......|+||+++ ++|+||||+
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-------------------~~~~~~p~gla~~-~dG~l~va~   99 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-------------------VSHKANPAAIKIH-KDGRLFVCY   99 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------ECSSSSEEEEEEC-TTSCEEEEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-------------------eCCCCCeeEEEEC-CCCCEEEEe
Confidence            4579999999999999999999999999987632 221                   1234579999997 799999997


Q ss_pred             CC-----CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          113 AY-----SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       113 ~~-----~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      ..     .+++.++..++....+....  .....|||+++++ +|++||||+...           ...+.|.+++++++
T Consensus       100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~nd~~~d~-~G~l~vtd~~~~-----------~~~~~g~v~~~~~d  165 (319)
T d2dg1a1         100 LGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDS-KGGFYFTDFRGY-----------STNPLGGVYYVSPD  165 (319)
T ss_dssp             CTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECT-TSCEEEEECCCB-----------TTBCCEEEEEECTT
T ss_pred             cCCCccceeEEEEcCCCceeeeeccCC--CcccCCcceeEEe-ccceeecccccc-----------cccCcceeEEEecc
Confidence            53     24888998877665544322  3467899999999 599999998642           12346889999998


Q ss_pred             CCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce----ee---ecCCCCCceeeeCCCCCCcEEE
Q 048181          188 SSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF----DI---INFQAKPHNIKRNPGLLQTFWE  260 (310)
Q Consensus       188 ~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~----~~---~~l~g~Pdgl~~d~~~dG~l~v  260 (310)
                      .+.++.+..++..||||+|++||++|||+++..++|++|+++.+.....    ..   ....+.||||++|+  +|+|||
T Consensus       166 g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~--~G~l~V  243 (319)
T d2dg1a1         166 FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS--DDNLYV  243 (319)
T ss_dssp             SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT--TCCEEE
T ss_pred             cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC--CCCEEE
Confidence            7778888889999999999999999999999999999999975421111    11   11124699999999  999999


Q ss_pred             EEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          261 AAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       261 a~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      |++..+        +|.+|||+|++++.|.+|..
T Consensus       244 a~~~~g--------~V~~~~p~G~~l~~i~~P~~  269 (319)
T d2dg1a1         244 AMYGQG--------RVLVFNKRGYPIGQILIPGR  269 (319)
T ss_dssp             EEETTT--------EEEEECTTSCEEEEEECTTG
T ss_pred             EEcCCC--------EEEEECCCCcEEEEEeCCCc
Confidence            999874        89999999999999999963

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=100.00  E-value=2.9e-33  Score=252.78  Aligned_cols=244  Identities=18%  Similarity=0.238  Sum_probs=183.7

Q ss_pred             ecceEEEeCCCCCCCcceEEEccCCCEEEEEeC-------CCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCC
Q 048181           21 IPTFTKILFPPKAFGGESIAFEPVGGAFYTGVA-------DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPIC   93 (310)
Q Consensus        21 ~~~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~-------~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   93 (310)
                      ++.++++  ...+.+|||++||++|++|+++..       +++|+|++++++...+....              ......
T Consensus         7 ~~~~~~v--~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~--------------~~~~~~   70 (314)
T d1pjxa_           7 EPLFTKV--TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP--------------EVNGYG   70 (314)
T ss_dssp             CCCCEEE--ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC--------------EETTEE
T ss_pred             CcceEEe--ecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC--------------ccccCC
Confidence            4555555  456889999999999999998743       68999999986644322110              111234


Q ss_pred             CceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeee
Q 048181           94 RRTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        94 ~~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~  173 (310)
                      +.|+||++++..++|||++..++|++++++++....+....++.+++.|||+++|+ +|+|||||+..........  ..
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~--~~  147 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYT--RS  147 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCC--BT
T ss_pred             CcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCccccccc--ce
Confidence            57999999844447999998888999999987655555556777899999999999 5999999987543222111  11


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCC----EEEEEecCCCeEEEEEecCCC-CCceee-ecC----CC
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSS----FLLVSEFTGNRTLKYWLRGPR-ANSFDI-INF----QA  243 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~----~Lyv~d~~~~~I~~~~~~~~~-~g~~~~-~~l----~g  243 (310)
                      ...+.|+||+++++ ++...+...+..||||+++++++    +|||+++.+++|++|+++.+. ....++ ..+    .+
T Consensus       148 ~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         148 MQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             TSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             eccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence            23467899999996 67777888899999999999875    799999999999999987541 111222 222    34


Q ss_pred             CCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCC-CcEEEEEecCCC
Q 048181          244 KPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAF-GAVLDTISFEAQ  294 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~p~~  294 (310)
                      .||||++|+  +|+||||.+...        +|.+|||+ |+++..++.|..
T Consensus       227 ~pdGiavD~--~GnlyVa~~~~g--------~I~~~dp~~g~~~~~i~~p~~  268 (314)
T d1pjxa_         227 GADGMDFDE--DNNLLVANWGSS--------HIEVFGPDGGQPKMRIRCPFE  268 (314)
T ss_dssp             EEEEEEEBT--TCCEEEEEETTT--------EEEEECTTCBSCSEEEECSSS
T ss_pred             cceeeEEec--CCcEEEEEcCCC--------EEEEEeCCCCEEEEEEECCCC
Confidence            699999999  999999999873        89999998 567888888854

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=1.1e-30  Score=233.76  Aligned_cols=236  Identities=13%  Similarity=0.132  Sum_probs=186.4

Q ss_pred             eeeecceEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCce
Q 048181           18 VFSIPTFTKILFPPKAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRT   96 (310)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P   96 (310)
                      +-.+++.+.+.-.. ..-.||+.||+ +|+|||+|+.+++|+|++++++...+.                    .....|
T Consensus         3 ~~~~~~~~~~~~~~-~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~--------------------~~~~~~   61 (295)
T d2ghsa1           3 TVFPFAGRVLDETP-MLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH--------------------ALPFMG   61 (295)
T ss_dssp             EEECCCCEEEECSC-CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--------------------ECSSCE
T ss_pred             cccceeEEEEcCCC-CeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE--------------------ECCCCc
Confidence            34456666666553 33459999996 588999999999999999987654322                    112357


Q ss_pred             eeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181           97 FGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus        97 ~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      .+++.+ ++|+|||+.. ++++++|+++++.+.+.....+.+.+.+||+++|+ +|++|++++...           ...
T Consensus        62 ~~i~~~-~dg~l~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~-----------~~~  127 (295)
T d2ghsa1          62 SALAKI-SDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRK-----------AET  127 (295)
T ss_dssp             EEEEEE-ETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETT-----------CCT
T ss_pred             EEEEEe-cCCCEEEEEe-CccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEecccc-----------ccc
Confidence            789987 7899999864 58999999999888877666666778999999999 599999986531           123


Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCC---CCceee----ecCCCCCceee
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPR---ANSFDI----INFQAKPHNIK  249 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~---~g~~~~----~~l~g~Pdgl~  249 (310)
                      +.|.+|+++.  ++++.+..++..|||+++++|++.||++|+..++|++|+++...   .+...+    .+..+.||||+
T Consensus       128 ~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~  205 (295)
T d2ghsa1         128 GAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV  205 (295)
T ss_dssp             TCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE
T ss_pred             cceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceE
Confidence            4578888863  67888888999999999999999999999999999999997542   122222    23456799999


Q ss_pred             eCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEE
Q 048181          250 RNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       250 ~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~  304 (310)
                      +|+  +|+||||.+..        ++|++|||+|++++.+.+|..    .+|.++
T Consensus       206 vD~--~GnlWva~~~~--------g~V~~~dp~G~~~~~i~lP~~----~~T~~~  246 (295)
T d2ghsa1         206 CDA--EGHIWNARWGE--------GAVDRYDTDGNHIARYEVPGK----QTTCPA  246 (295)
T ss_dssp             ECT--TSCEEEEEETT--------TEEEEECTTCCEEEEEECSCS----BEEEEE
T ss_pred             EcC--CCCEEeeeeCC--------CceEEecCCCcEeeEecCCCC----ceEEEE
Confidence            999  99999999987        389999999999999999975    566654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.94  E-value=8.9e-25  Score=198.70  Aligned_cols=262  Identities=15%  Similarity=0.127  Sum_probs=181.4

Q ss_pred             CCCCCCcceEEEccCCCEEEEEe------------CCCeEEEEECCCc---eEEeeeecCCCCccccCCCccccCCCCCC
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGV------------ADGRILKYQAPDG---FTDFAFTTPTRSKAVCDGTTNLDLGPICR   94 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~------------~~g~I~r~~~~g~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   94 (310)
                      ++-..+||+|+++++|..|+++-            ..|+|+.++.+..   ...+...+         +    .+.....
T Consensus        31 ~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~---------~----~~~~~~f   97 (340)
T d1v04a_          31 KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIG---------N----TLDISSF   97 (340)
T ss_dssp             TTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEEC---------S----SSCGGGC
T ss_pred             CCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecC---------C----CCCCcce
Confidence            44456899999999998776652            1478888886532   22222111         0    0112346


Q ss_pred             ceeeEEEec-CCC--eEEEEeCC-C----cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCcc
Q 048181           95 RTFGLALHY-ATR--QLYIADAY-S----GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFR  166 (310)
Q Consensus        95 ~P~Gla~d~-~~g--~LyVad~~-~----gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~  166 (310)
                      .|+||.+.. .+|  +|||+++. .    .++.++.++.+.+. .....++.+..|||+++.. +|.+|+|+........
T Consensus        98 ~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~-~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~  175 (340)
T d1v04a_          98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLH-LKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPY  175 (340)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEE-EEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHH
T ss_pred             eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEE-EeecCCccccCccceEEec-CCCEEEecCccCcChh
Confidence            899998732 344  68888873 2    27788877665543 4445667789999999999 5999999864321111


Q ss_pred             ceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCC
Q 048181          167 TIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKP  245 (310)
Q Consensus       167 ~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~P  245 (310)
                      ....+.+...+.|.++++|+  ++.+++.+++.+||||+++||+++|||+++..++|++|+++++...+... ..+++.|
T Consensus       176 ~~~~e~~~~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~p  253 (340)
T d1v04a_         176 LKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV  253 (340)
T ss_dssp             HHHHHHHTTCCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE
T ss_pred             hhhhhHhhcCCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCC
Confidence            11111223456789999986  46778889999999999999999999999999999999998754333333 6789999


Q ss_pred             ceeeeCCCCCCcEEEEEecCCC------CCCCCceeeEEE----CCCCcEEEEEecCCCccccceeEEEecCCCC
Q 048181          246 HNIKRNPGLLQTFWEAAIITRQ------PAGTPVPIGQRI----SAFGAVLDTISFEAQYSTTPISEVQPFGGAL  310 (310)
Q Consensus       246 dgl~~d~~~dG~l~va~~~~~~------~~~~~~~~v~~~----~~~G~~~~~~~~p~~~~~~~~t~~~~~~~~l  310 (310)
                      |||.+|++ +|.+|++++....      +..+....+.|+    .+++++.+.+... |..++.+|.+++++|+|
T Consensus       254 DNi~~d~~-~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v~~~~~~~-G~~~~~~T~a~~~~g~L  326 (340)
T d1v04a_         254 DNISVDPV-TGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAEN-GTVLQGSTVAAVYKGKL  326 (340)
T ss_dssp             EEEEECTT-TCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEEC-SSSSCSEEEEEEETTEE
T ss_pred             CccEEecC-CCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCCCeEEEEEeCC-CcEeeceEEEEEECCEE
Confidence            99999842 7899999986421      111122345554    3578899888886 44689999999999986

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.93  E-value=8e-24  Score=188.77  Aligned_cols=221  Identities=17%  Similarity=0.108  Sum_probs=163.0

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY  103 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~  103 (310)
                      +..++.+   ..||++|+++||+||+++..+++|+|++++++.+.+.                    ...++|+|++++ 
T Consensus        21 ~~~~p~~---~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~--------------------~~~~~~~gla~~-   76 (302)
T d2p4oa1          21 ITSFPVN---TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA--------------------TVEGKVSGLAFT-   76 (302)
T ss_dssp             EEEECTT---CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE--------------------ECSSEEEEEEEC-
T ss_pred             EEECCCC---CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEE--------------------cCCCCcceEEEc-
Confidence            4445443   3699999999999999999999999999998766543                    234579999997 


Q ss_pred             CCCeEEEEeCCCc-EEEEeCC--CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181          104 ATRQLYIADAYSG-LLVVGPN--GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       104 ~~g~LyVad~~~g-i~~id~~--~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                      .+|+|||++...+ +.+++..  .+..+.+....   ....+|++++++ +|++|++|+..                 ++
T Consensus        77 ~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~i~~~~-~g~~~v~~~~~-----------------~~  135 (302)
T d2p4oa1          77 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP---DAIFLNGITPLS-DTQYLTADSYR-----------------GA  135 (302)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT---TCSCEEEEEESS-SSEEEEEETTT-----------------TE
T ss_pred             CCCCeEEEecCCceEEEEEecccccceeeccccC---CccccceeEEcc-CCCEEeecccc-----------------cc
Confidence            7899999986543 5555543  34444444332   345789999999 59999998753                 57


Q ss_pred             EEEEcCCCCeEEEee-----------cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCC-Cceee-ecCCCCCce
Q 048181          181 LLSYNPRSSQVTVLL-----------RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA-NSFDI-INFQAKPHN  247 (310)
Q Consensus       181 l~~~d~~~g~~~~~~-----------~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~-g~~~~-~~l~g~Pdg  247 (310)
                      ++++++.++......           .....+|||+++  +++||++++.+++|++++.++... ..... ... ..|||
T Consensus       136 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~pdg  212 (302)
T d2p4oa1         136 IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDD  212 (302)
T ss_dssp             EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSS
T ss_pred             ceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCC-CCCcc
Confidence            788877766544432           234578999886  457999999999999999875421 11122 222 46999


Q ss_pred             eeeCCCCCCcEEEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCCccccceeEEE
Q 048181          248 IKRNPGLLQTFWEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       248 l~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~~~~~~~t~~~  304 (310)
                      |++|+  +|+||++.....        +|.|++|+|++......+.+.  ...|.++
T Consensus       213 ia~d~--dG~l~va~~~~~--------~V~~i~p~G~~~~~~~~~~~~--~~pt~va  257 (302)
T d2p4oa1         213 FAFDV--EGNLYGATHIYN--------SVVRIAPDRSTTIIAQAEQGV--IGSTAVA  257 (302)
T ss_dssp             EEEBT--TCCEEEECBTTC--------CEEEECTTCCEEEEECGGGTC--TTEEEEE
T ss_pred             eEECC--CCCEEEEEcCCC--------cEEEECCCCCEEEEEecCCCC--CCceEEE
Confidence            99999  999999998763        799999999998888877553  3455544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=1.7e-21  Score=169.84  Aligned_cols=187  Identities=22%  Similarity=0.314  Sum_probs=136.8

Q ss_pred             CCcceEEEccCCCEEEEEeC-CCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVGGAFYTGVA-DGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~-~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      .+|++|++|++|++|+++.. +++|.++++.+.......                  ......|.|++++ .+|+|||+|
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~------------------~~~~~~p~gvav~-~~g~i~v~d   74 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP------------------FNGLYQPQGLAVD-GAGTVYVTD   74 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC------------------CCSCCSCCCEEEC-TTCCEEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec------------------cCCccCceEEEEc-CCCCEEEee
Confidence            68999999999999998864 578999988754433210                  1234679999998 789999999


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ...+++++...+.....+.    ...+..|+++++++ +|++|++|...                 .++++++..+....
T Consensus        75 ~~~~~i~~~~~~~~~~~~~----~~~~~~p~~iavd~-~g~i~v~d~~~-----------------~~~~~~~~~~~~~~  132 (260)
T d1rwia_          75 FNNRVVTLAAGSNNQTVLP----FDGLNYPEGLAVDT-QGAVYVADRGN-----------------NRVVKLAAGSKTQT  132 (260)
T ss_dssp             TTTEEEEECTTCSCCEECC----CCSCCSEEEEEECT-TCCEEEEEGGG-----------------TEEEEECTTCSSCE
T ss_pred             eeeceeeeeeeccceeeee----eeeeeecccccccc-cceeEeecccc-----------------ccccccccccceee
Confidence            9888777776554333221    12467899999999 59999998653                 46777877644433


Q ss_pred             Ee-ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          193 VL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       193 ~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      .. ..++..|+||+++++|+ +|+++..+++|.+++.++.  ..... ..-...|.||++|+  +|+|||+++...
T Consensus       133 ~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~--~~~~~~~~~~~~p~gi~~d~--~g~l~vsd~~~~  203 (260)
T d1rwia_         133 VLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESN--NQVVLPFTDITAPWGIAVDE--AGTVYVTEHNTN  203 (260)
T ss_dssp             ECCCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTC--CEEECCCSSCCSEEEEEECT--TCCEEEEETTTT
T ss_pred             eeeecccCCcceeeecCCCC-Eeeeccccccccccccccc--eeeeeeccccCCCccceeee--eeeeeeeecCCC
Confidence            32 35678999999999997 8999999999999987653  22222 22235799999999  999999998763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=6.8e-22  Score=172.48  Aligned_cols=197  Identities=18%  Similarity=0.270  Sum_probs=146.5

Q ss_pred             CCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      +.+..|++++++++|++|+++..++.+ ++..++......                  .......|.|++++ .+|+||+
T Consensus        54 ~~~~~p~gvav~~~g~i~v~d~~~~~i-~~~~~~~~~~~~------------------~~~~~~~p~~iavd-~~g~i~v  113 (260)
T d1rwia_          54 NGLYQPQGLAVDGAGTVYVTDFNNRVV-TLAAGSNNQTVL------------------PFDGLNYPEGLAVD-TQGAVYV  113 (260)
T ss_dssp             CSCCSCCCEEECTTCCEEEEETTTEEE-EECTTCSCCEEC------------------CCCSCCSEEEEEEC-TTCCEEE
T ss_pred             CCccCceEEEEcCCCCEEEeeeeecee-eeeeeccceeee------------------eeeeeeeccccccc-ccceeEe
Confidence            457889999999999988888766555 444443332211                  01234689999998 7899999


Q ss_pred             EeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          111 ADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       111 ad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      +|... .+.+++..+.......    ...+..|+++++++ +|++|++|...                 ++++++++++.
T Consensus       114 ~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~i~~~~-~g~~~v~~~~~-----------------~~i~~~d~~~~  171 (260)
T d1rwia_         114 ADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDN-SGNVYVTDTDN-----------------NRVVKLEAESN  171 (260)
T ss_dssp             EEGGGTEEEEECTTCSSCEECC----CCSCCSCCEEEECT-TCCEEEEEGGG-----------------TEEEEECTTTC
T ss_pred             eccccccccccccccceeeeee----ecccCCcceeeecC-CCCEeeecccc-----------------ccccccccccc
Confidence            98764 4888888765433321    12467899999999 59999998653                 68999998755


Q ss_pred             eEEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          190 QVTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       190 ~~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ....+ ...+..|+||+++++|+ |||++..+++|++|+.++.   ...+   .++ ..|.+|++|+  +|+|||+++..
T Consensus       172 ~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~---~~~~~~~~~~-~~P~~i~~d~--~g~l~vad~~~  244 (260)
T d1rwia_         172 NQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGST---TSTVLPFTGL-NTPLAVAVDS--DRTVYVADRGN  244 (260)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCS---CCEECCCCSC-CCEEEEEECT--TCCEEEEEGGG
T ss_pred             eeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCC---eEEEEccCCC-CCeEEEEEeC--CCCEEEEECCC
Confidence            44443 35688999999999997 9999999999999987643   2222   222 4699999999  99999999887


Q ss_pred             CCCCCCCceeeEEECCCCc
Q 048181          266 RQPAGTPVPIGQRISAFGA  284 (310)
Q Consensus       266 ~~~~~~~~~~v~~~~~~G~  284 (310)
                      .        +|.+|+..++
T Consensus       245 ~--------rI~~i~~~~~  255 (260)
T d1rwia_         245 D--------RVVKLTSLEH  255 (260)
T ss_dssp             T--------EEEEECCCGG
T ss_pred             C--------EEEEEeCCCC
Confidence            4        8999998654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=1.4e-20  Score=165.62  Aligned_cols=216  Identities=11%  Similarity=0.147  Sum_probs=157.4

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      +++|..|.||++|++|++|++|..+++|++++++|... .+...+              ........|.+++++...+..
T Consensus        19 ~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~--------------~~~~~~~~p~~~~~~~~~~~~   84 (279)
T d1q7fa_          19 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG--------------KRDSQLLYPNRVAVVRNSGDI   84 (279)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS--------------SSTTCBSSEEEEEEETTTTEE
T ss_pred             CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccC--------------CCccccccccccccccccccc
Confidence            46789999999999999999999999999999998754 332110              011234579999986455666


Q ss_pred             EEEeC-CC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          109 YIADA-YS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       109 yVad~-~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      +++.. .+ .|.+++..+.....+    ....+..|+++++++ +|++|++|...                 ++++++++
T Consensus        85 ~~~~~~~~~~i~~~~~~g~~~~~~----~~~~~~~p~~~avd~-~G~i~v~~~~~-----------------~~~~~~~~  142 (279)
T d1q7fa_          85 IVTERSPTHQIQIYNQYGQFVRKF----GATILQHPRGVTVDN-KGRIIVVECKV-----------------MRVIIFDQ  142 (279)
T ss_dssp             EEEECGGGCEEEEECTTSCEEEEE----CTTTCSCEEEEEECT-TSCEEEEETTT-----------------TEEEEECT
T ss_pred             ceeccCCccccccccccccceeec----CCCcccccceecccc-CCcEEEEeecc-----------------ceeeEecc
Confidence            65543 33 477888776544433    223567899999999 59999998753                 46777777


Q ss_pred             CCCeEEEe--ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEE
Q 048181          187 RSSQVTVL--LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       187 ~~g~~~~~--~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      +...+..+  ...+..|++|+++++|+ +|+++...++|++|+.+|...  .++  .+....|.||++|+  +|+||||+
T Consensus       143 ~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~~--~~~g~~g~~~~P~giavD~--~G~i~Vad  217 (279)
T d1q7fa_         143 NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQYL--RQIGGEGITNYPIGVGINS--NGEILIAD  217 (279)
T ss_dssp             TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCEE--EEESCTTTSCSEEEEEECT--TCCEEEEE
T ss_pred             CCceeecccccccccccceeeecccee-EEeeeccccceeeeecCCcee--eeecccccccCCccccccc--CCeEEEEE
Confidence            53323322  23567899999999985 999999999999999875321  122  12234699999999  99999998


Q ss_pred             ecCCCCCCCCceeeEEECCCCcEEEEEecCC
Q 048181          263 IITRQPAGTPVPIGQRISAFGAVLDTISFEA  293 (310)
Q Consensus       263 ~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~  293 (310)
                      ...+       .++.+|+++|+.+..+..+.
T Consensus       218 ~~~~-------~~v~~f~~~G~~~~~~~~~~  241 (279)
T d1q7fa_         218 NHNN-------FNLTIFTQDGQLISALESKV  241 (279)
T ss_dssp             CSSS-------CEEEEECTTSCEEEEEEESS
T ss_pred             CCCC-------cEEEEECCCCCEEEEEeCCC
Confidence            7543       36889999999998887664

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3e-18  Score=149.81  Aligned_cols=203  Identities=17%  Similarity=0.154  Sum_probs=155.9

Q ss_pred             cceEEEccC-CCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           36 GESIAFEPV-GGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        36 Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      +.+|++|.. +.+||+|...++|++++.+++. +++.                   ......|.||++|...++||+++.
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-------------------~~~~~~p~~iAvD~~~~~lY~~d~   98 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-------------------RQDLGSPEGIALDHLGRTIFWTDS   98 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-------------------CTTCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-------------------EeccccccEEEEeccCCeEEEecc
Confidence            557899965 6799999999999999988653 3332                   123457999999966899999998


Q ss_pred             CC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          114 YS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       114 ~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      .. .|.++++++...+.+...    .+..|.++++||..|.+|+++...               ..++|++.+.++...+
T Consensus        99 ~~~~I~~~~~dg~~~~~l~~~----~l~~p~~l~vdp~~g~ly~t~~~~---------------~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          99 QLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRR  159 (263)
T ss_dssp             TTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCE
T ss_pred             CCCEEEEEecCCceEEEEecc----cccCCcEEEEecccCcEEEeecCC---------------CCcEEEEecCCCCCce
Confidence            65 488999887655554432    356789999999889999999753               2357999988644333


Q ss_pred             -EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecCCCCCC
Q 048181          193 -VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIITRQPAG  270 (310)
Q Consensus       193 -~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~  270 (310)
                       .+.+++..|+||++|+.++.||++|...++|.+++++|..  ...+ .+++ .|.+|+++.   +.||++++...    
T Consensus       160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~--~~~v~~~~~-~P~~lav~~---~~lYwtd~~~~----  229 (263)
T d1npea_         160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG--RRKVLEGLQ-YPFAVTSYG---KNLYYTDWKTN----  229 (263)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE--EEEEEECCC-SEEEEEEET---TEEEEEETTTT----
T ss_pred             eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC--eEEEECCCC-CcEEEEEEC---CEEEEEECCCC----
Confidence             3456889999999999989999999999999999998632  1223 5554 699999985   79999998864    


Q ss_pred             CCceeeEEECCC-CcEEEEEe
Q 048181          271 TPVPIGQRISAF-GAVLDTIS  290 (310)
Q Consensus       271 ~~~~~v~~~~~~-G~~~~~~~  290 (310)
                          .+.++|.. |+.+..+.
T Consensus       230 ----~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         230 ----SVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             ----EEEEEETTTTEEEEEEC
T ss_pred             ----EEEEEECCCCccceEEC
Confidence                79999975 77665554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.7e-18  Score=147.75  Aligned_cols=213  Identities=14%  Similarity=0.137  Sum_probs=155.1

Q ss_pred             CCCCcceEEEccC-CCEEEEEeCCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           32 KAFGGESIAFEPV-GGAFYTGVADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        32 ~~~~Pegia~d~~-G~l~~~d~~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      .+..|.++++|.. +.+||+|...++|++.+.++...  ...                .........|.|||+|...++|
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~----------------~~~~~~~~~p~glAvD~~~~~l   91 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD----------------TVISRDIQAPDGLAVDWIHSNI   91 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE----------------EEECSSCSCCCEEEEETTTTEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceE----------------EEEeCCCCCcceEEEeeccceE
Confidence            4567889999975 67999999999999998764211  000                0011335679999999778999


Q ss_pred             EEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          109 YIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       109 yVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      |++|...+ |.++++++.....+...    ....|.++++|+..|.+|++|.+.                .++|+|.+.+
T Consensus        92 Y~~d~~~~~I~v~~~~g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~~----------------~~~I~r~~~d  151 (266)
T d1ijqa1          92 YWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLN  151 (266)
T ss_dssp             EEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETT
T ss_pred             EEEecCCCEEEeEecCCceEEEEEcC----CCCCcceEEEEcccCeEEEeccCC----------------CcceeEeccC
Confidence            99998754 88899887665444332    245789999999779999998653                3689999987


Q ss_pred             CCeEEEee-cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          188 SSQVTVLL-RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       188 ~g~~~~~~-~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      ....+.+. .++..|+||++++.++.||++|...++|.+++++|........ ......|.+|+++.   +.||++++..
T Consensus       152 Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~---~~ly~td~~~  228 (266)
T d1ijqa1         152 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE---DKVFWTDIIN  228 (266)
T ss_dssp             SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET---TEEEEEETTT
T ss_pred             CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC---CEEEEEECCC
Confidence            55555544 5788999999999999999999999999999998753211111 11123589999996   7999999876


Q ss_pred             CCCCCCCceeeEEECC-CCcEEEEEec
Q 048181          266 RQPAGTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       266 ~~~~~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                      .        .+.+++. +|+....+..
T Consensus       229 ~--------~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         229 E--------AIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             T--------EEEEEETTTCCCCEEEEC
T ss_pred             C--------eEEEEECCCCcceEEEEc
Confidence            3        7888874 6766655554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.78  E-value=8.5e-18  Score=150.50  Aligned_cols=194  Identities=16%  Similarity=0.241  Sum_probs=138.2

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAY  114 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~  114 (310)
                      .|.|++++++|+++|+....++|++++++++...+....       .+|       .....|+.+++| ++|+|||+|..
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~-------~~g-------~~~~~pndl~~d-~~G~lyvtd~~  136 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKD-------SEG-------RRMQGCNDCAFD-YEGNLWITAPA  136 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBC-------TTS-------CBCBCCCEEEEC-TTSCEEEEECB
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEecc-------ccc-------cccCCCcEEEEC-CCCCEEEecCc
Confidence            489999999998788877788999999998765443110       111       234468999998 78999999842


Q ss_pred             ---------------C-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC-----eEEEEcCCCccCccceeEeee
Q 048181          115 ---------------S-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG-----VVYFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus       115 ---------------~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G-----~lyvtd~~~~~~~~~~~~~~~  173 (310)
                                     . .|+++++++. ...+..     .+.+||+++++++ +     .||++|+..            
T Consensus       137 ~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~~~-----~~~~pNGi~~~~d-~d~~~~~lyv~d~~~------------  197 (314)
T d1pjxa_         137 GEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDT-----AFQFPNGIAVRHM-NDGRPYQLIVAETPT------------  197 (314)
T ss_dssp             CBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEE-----EESSEEEEEEEEC-TTSCEEEEEEEETTT------------
T ss_pred             cCcccccccceeccCCceEEEEeecCc-eeEeeC-----CcceeeeeEECCC-CCcceeEEEEEeecc------------
Confidence                           1 3889988763 433332     4678999999985 4     599999754            


Q ss_pred             ecCCCceEEEEcCC-CCeEE---Eee----cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC-C
Q 048181          174 TNDSTGRLLSYNPR-SSQVT---VLL----RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ-A  243 (310)
Q Consensus       174 ~~~~~G~l~~~d~~-~g~~~---~~~----~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~-g  243 (310)
                           ++|++||.+ .+.+.   +..    .....|+||+++++|+ |||++...++|++|+.++   +.... ..+| .
T Consensus       198 -----~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~---g~~~~~i~~p~~  268 (314)
T d1pjxa_         198 -----KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDG---GQPKMRIRCPFE  268 (314)
T ss_dssp             -----TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTC---BSCSEEEECSSS
T ss_pred             -----cceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCC---CEEEEEEECCCC
Confidence                 678887632 23332   111    1234689999999997 999999999999998764   32222 3344 3


Q ss_pred             CCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECC
Q 048181          244 KPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISA  281 (310)
Q Consensus       244 ~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~  281 (310)
                      .|.++++.+  ||+ |||+.....        .+.+++.
T Consensus       269 ~~t~~afg~--d~~~lyVt~~~~g--------~i~~~~~  297 (314)
T d1pjxa_         269 KPSNLHFKP--QTKTIFVTEHENN--------AVWKFEW  297 (314)
T ss_dssp             CEEEEEECT--TSSEEEEEETTTT--------EEEEEEC
T ss_pred             CEEEEEEeC--CCCEEEEEECCCC--------cEEEEEC
Confidence            689999998  884 999987653        6777663

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=4.1e-16  Score=136.65  Aligned_cols=190  Identities=12%  Similarity=0.166  Sum_probs=135.4

Q ss_pred             CCCCcceEEEccC-CCEEEEE-eCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEPV-GGAFYTG-VADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~~-G~l~~~d-~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      ....|.+++++.+ +..+++. ..+++|.++++++......                  .......|.+++++ .+|++|
T Consensus        68 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~------------------~~~~~~~p~~~avd-~~G~i~  128 (279)
T d1q7fa_          68 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF------------------GATILQHPRGVTVD-NKGRII  128 (279)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEE------------------CTTTCSCEEEEEEC-TTSCEE
T ss_pred             cccccccccccccccccceeccCCccccccccccccceeec------------------CCCcccccceeccc-cCCcEE
Confidence            4557999998766 4444443 4577999999887653211                  01345679999998 789999


Q ss_pred             EEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          110 IADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       110 Vad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      +++.... +.++++++..+..+...   ..+..|+++++++ +|++|++|...                 ++|++||++.
T Consensus       129 v~~~~~~~~~~~~~~g~~~~~~g~~---~~~~~~~~i~~d~-~g~i~v~d~~~-----------------~~V~~~d~~G  187 (279)
T d1q7fa_         129 VVECKVMRVIIFDQNGNVLHKFGCS---KHLEFPNGVVVND-KQEIFISDNRA-----------------HCVKVFNYEG  187 (279)
T ss_dssp             EEETTTTEEEEECTTSCEEEEEECT---TTCSSEEEEEECS-SSEEEEEEGGG-----------------TEEEEEETTC
T ss_pred             EEeeccceeeEeccCCceeeccccc---ccccccceeeecc-ceeEEeeeccc-----------------cceeeeecCC
Confidence            9987654 88899887655554322   3567899999999 59999999753                 5788888863


Q ss_pred             CeEEEee--cCCCCCceeEEccCCCEEEEEecCC-CeEEEEEecCCCCCceeeecC-CCCCceeeeCCCCCCcEEEEEec
Q 048181          189 SQVTVLL--RNLTGPAGVAISVDSSFLLVSEFTG-NRTLKYWLRGPRANSFDIINF-QAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       189 g~~~~~~--~~l~~pnGIa~~~dg~~Lyv~d~~~-~~I~~~~~~~~~~g~~~~~~l-~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      ..+..+.  ..+..|.||+++++|+ |||+|..+ ++|.+|+.+|....... ... ...|.+|++++  ||+|||++..
T Consensus       188 ~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~~~~~~~-~~~~~~~p~~vav~~--dG~l~V~~~n  263 (279)
T d1q7fa_         188 QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLISALE-SKVKHAQCFDVALMD--DGSVVLASKD  263 (279)
T ss_dssp             CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEEEEEE-ESSCCSCEEEEEEET--TTEEEEEETT
T ss_pred             ceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCCCEEEEEe-CCCCCCCEeEEEEeC--CCcEEEEeCC
Confidence            3333332  2467899999999998 99999864 57888876543111111 222 24699999999  9999999865


Q ss_pred             C
Q 048181          265 T  265 (310)
Q Consensus       265 ~  265 (310)
                      .
T Consensus       264 ~  264 (279)
T d1q7fa_         264 Y  264 (279)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.9e-16  Score=136.18  Aligned_cols=178  Identities=18%  Similarity=0.125  Sum_probs=135.7

Q ss_pred             CCCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           31 PKAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        31 ~~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      .++..|+++|+|. .++|||++...++|.+++.++... ++.                   ......|.+|++|+..|.|
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~-------------------~~~l~~p~~l~vdp~~g~l  136 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-------------------DTGLVNPRGIVTDPVRGNL  136 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------------CSSCSSEEEEEEETTTTEE
T ss_pred             eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe-------------------cccccCCcEEEEecccCcE
Confidence            3567899999996 568999999999999999987643 222                   1234679999999889999


Q ss_pred             EEEeCCC---cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181          109 YIADAYS---GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       109 yVad~~~---gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                      |+++.+.   .|++.++++...+.+..    ..+..|+++++|+.+++||++|...                 ++|.+++
T Consensus       137 y~t~~~~~~~~I~r~~~dG~~~~~i~~----~~~~~P~glaiD~~~~~lYw~d~~~-----------------~~I~~~~  195 (263)
T d1npea_         137 YWTDWNRDNPKIETSHMDGTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAGT-----------------HRAECLN  195 (263)
T ss_dssp             EEEECCSSSCEEEEEETTSCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETTT-----------------TEEEEEE
T ss_pred             EEeecCCCCcEEEEecCCCCCceeeee----ecccccceEEEeecCcEEEEEeCCC-----------------CEEEEEE
Confidence            9998764   39999998765555442    2456899999998778999999753                 6899999


Q ss_pred             CCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCC
Q 048181          186 PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNP  252 (310)
Q Consensus       186 ~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~  252 (310)
                      .++...+.+..++..|.||+++  +++||++|...++|++++..+.  ....+  ..-...|-||++-.
T Consensus       196 ~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g--~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         196 PAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS--KEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             TTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT--EEEEEECCSSCCCCCCEEEEC
T ss_pred             CCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCC--ccceEECCCCCCCcceEEEeC
Confidence            8866777778889999999997  4579999999999999997642  11222  12223588888754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.70  E-value=1.4e-15  Score=136.00  Aligned_cols=187  Identities=16%  Similarity=0.202  Sum_probs=128.9

Q ss_pred             CCcceEEEccCCCEEEEEeC----CCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           34 FGGESIAFEPVGGAFYTGVA----DGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~----~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      ..|.+++++++|++|+++..    .++|++++..++. ..+..                 ......+|++++++ ++|+|
T Consensus        82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~nd~~~d-~~G~l  143 (319)
T d2dg1a1          82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-----------------DLSTAYCIDDMVFD-SKGGF  143 (319)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC-----------------SSSSCCCEEEEEEC-TTSCE
T ss_pred             CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc-----------------CCCcccCCcceeEE-eccce
Confidence            47999999999999888753    5678888887543 22210                 01234579999998 79999


Q ss_pred             EEEeCCC-------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          109 YIADAYS-------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       109 yVad~~~-------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                      |++|...       .+++++++++.++.+..     .+..||++++++++..||++|+..                 ++|
T Consensus       144 ~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-----~~~~pnGia~s~dg~~lyvad~~~-----------------~~I  201 (319)
T d2dg1a1         144 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----NISVANGIALSTDEKVLWVTETTA-----------------NRL  201 (319)
T ss_dssp             EEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----EESSEEEEEECTTSSEEEEEEGGG-----------------TEE
T ss_pred             eecccccccccCcceeEEEecccceeEEEee-----ccceeeeeeeccccceEEEecccC-----------------Cce
Confidence            9998642       39999998876665543     467899999999644699999753                 567


Q ss_pred             EEEcCCC-C-eEE-------EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ec---CCCCCcee
Q 048181          182 LSYNPRS-S-QVT-------VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-IN---FQAKPHNI  248 (310)
Q Consensus       182 ~~~d~~~-g-~~~-------~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~---l~g~Pdgl  248 (310)
                      ++|+.+. + ...       ........|.||+++++|+ |||++...++|++|+.+|....+..+ ..   ....+..+
T Consensus       202 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~  280 (319)
T d2dg1a1         202 HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHP  280 (319)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEE
T ss_pred             EEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeE
Confidence            7775321 1 111       1123455799999999998 99999999999999977542222222 11   01136678


Q ss_pred             eeCCCCCCc-EEEEEe
Q 048181          249 KRNPGLLQT-FWEAAI  263 (310)
Q Consensus       249 ~~d~~~dG~-l~va~~  263 (310)
                      ++..  +++ +|++..
T Consensus       281 ~~~~--~~~~~~~t~~  294 (319)
T d2dg1a1         281 QFIP--GTNQLIICSN  294 (319)
T ss_dssp             EECT--TSCEEEEEEE
T ss_pred             EEeC--CCCEEEEEcC
Confidence            8877  664 566644

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.3e-15  Score=128.11  Aligned_cols=177  Identities=13%  Similarity=0.157  Sum_probs=130.6

Q ss_pred             CCCCCCcceEEEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           30 PPKAFGGESIAFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        30 ~~~~~~Pegia~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      ...+..|++||+|. .+++||++...++|.+.+.+|.......                  .....+|.+|++|+.+|.|
T Consensus        73 ~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~------------------~~~~~~P~~l~vd~~~g~l  134 (266)
T d1ijqa1          73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF------------------RENGSKPRAIVVDPVHGFM  134 (266)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE------------------ECTTCCEEEEEEETTTTEE
T ss_pred             eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEE------------------cCCCCCcceEEEEcccCeE
Confidence            34577899999996 5789999999999999999976533211                  1234689999999779999


Q ss_pred             EEEeCCC--cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          109 YIADAYS--GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       109 yVad~~~--gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      |+++.+.  .|.+.++++...+.+...    .+..|+++++|+.+++||++|...                 ++|.+++.
T Consensus       135 y~~~~~~~~~I~r~~~dGs~~~~l~~~----~~~~p~gl~iD~~~~~lYw~d~~~-----------------~~I~~~~~  193 (266)
T d1ijqa1         135 YWTDWGTPAKIKKGGLNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSKL-----------------HSISSIDV  193 (266)
T ss_dssp             EEEECSSSCEEEEEETTSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETTT-----------------TEEEEEET
T ss_pred             EEeccCCCcceeEeccCCCceeccccc----ccceeeEEEeeccccEEEEecCCc-----------------CEEEEEEC
Confidence            9998764  499999987666555432    356799999998778999999753                 57888888


Q ss_pred             CCCeEEEee---cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeee
Q 048181          187 RSSQVTVLL---RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKR  250 (310)
Q Consensus       187 ~~g~~~~~~---~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~  250 (310)
                      ++...+.+.   ..+..|.||+++.  ++||++|...++|++++..+.  ...+.  .++. .|-+|.+
T Consensus       194 dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~g--~~~~~~~~~~~-~p~~i~v  257 (266)
T d1ijqa1         194 NGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTG--SDVNLLAENLL-SPEDMVL  257 (266)
T ss_dssp             TSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTTC--CCCEEEECSCS-CCCCEEE
T ss_pred             CCCCEEEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCCC--cceEEEEcCCC-CceEEEE
Confidence            754444443   3356788999983  479999999999999986532  12222  3343 4666665

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.63  E-value=1e-14  Score=128.87  Aligned_cols=189  Identities=13%  Similarity=0.048  Sum_probs=132.9

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECC---CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAP---DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~---g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      ..|.+++++++|++|+++..++.+.+++..   +....+..                  ......|++++++ .+|++|+
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~n~i~~~-~~g~~~v  128 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT------------------LPDAIFLNGITPL-SDTQYLT  128 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE------------------CTTCSCEEEEEES-SSSEEEE
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc------------------cCCccccceeEEc-cCCCEEe
Confidence            479999999999999999888888877644   22332221                  1345579999997 7999999


Q ss_pred             EeCCC-cEEEEeCCCCeEEEeecc------CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEE
Q 048181          111 ADAYS-GLLVVGPNGRLATQLATG------AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       111 ad~~~-gi~~id~~~~~~~~~~~~------~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      ++... .++++++.++....+...      .....+..+|+++.+.  +.+|++++..                 +++++
T Consensus       129 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~-----------------~~i~~  189 (302)
T d2p4oa1         129 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEK-----------------MLLLR  189 (302)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTT-----------------TEEEE
T ss_pred             eccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCC-----------------CeEEe
Confidence            98765 499999988766544321      1123456789999884  7899998754                 68888


Q ss_pred             EcCCCCeEE---EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee----ecCCCCCceeeeCC-CCC
Q 048181          184 YNPRSSQVT---VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI----INFQAKPHNIKRNP-GLL  255 (310)
Q Consensus       184 ~d~~~g~~~---~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~----~~l~g~Pdgl~~d~-~~d  255 (310)
                      ++.+.....   ........|.||++++||+ ||+++...++|++|+.+|.   ...+    ..+. .|.+++++. ++|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~---~~~~~~~~~~~~-~pt~vafg~~~~D  264 (302)
T d2p4oa1         190 IPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS---TTIIAQAEQGVI-GSTAVAFGQTEGD  264 (302)
T ss_dssp             EEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC---EEEEECGGGTCT-TEEEEEECCSTTT
T ss_pred             ccccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCC---EEEEEecCCCCC-CceEEEEcCCCCC
Confidence            876532111   1223456899999999997 9999999999999987653   1222    2233 599999953 014


Q ss_pred             C-cEEEEEecC
Q 048181          256 Q-TFWEAAIIT  265 (310)
Q Consensus       256 G-~l~va~~~~  265 (310)
                      + .|||+....
T Consensus       265 ~~~Lyvtt~~g  275 (302)
T d2p4oa1         265 CTAIYVVTNGG  275 (302)
T ss_dssp             TTEEEEEECTT
T ss_pred             CCEEEEECCCC
Confidence            4 599986653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.41  E-value=1.8e-11  Score=107.67  Aligned_cols=192  Identities=13%  Similarity=0.099  Sum_probs=130.3

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      ..+.+.+|.   .|.+++++++|+++++.  ...|++++++++ .+.+...               .......+|+.+++
T Consensus        51 ~~~~~~~~~---~~~~i~~~~dg~l~va~--~~gl~~~d~~tg~~~~l~~~---------------~~~~~~~~~nd~~v  110 (295)
T d2ghsa1          51 RKTVHALPF---MGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAEL---------------ESDLPGNRSNDGRM  110 (295)
T ss_dssp             EEEEEECSS---CEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECS---------------STTCTTEEEEEEEE
T ss_pred             eEEEEECCC---CcEEEEEecCCCEEEEE--eCccEEeecccceeeEEeee---------------ecCCCcccceeeEE
Confidence            455667774   58899999999977664  457999998854 4444311               00123457899999


Q ss_pred             ecCCCeEEEEeCC------C-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181          102 HYATRQLYIADAY------S-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus       102 d~~~g~LyVad~~------~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      | ++|++|+++..      . .+++++  .++.+.+..     .+..||++++++++..+|++|+..             
T Consensus       111 d-~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~-----~~~~~Ng~~~s~d~~~l~~~dt~~-------------  169 (295)
T d2ghsa1         111 H-PSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-----DISIPNSICFSPDGTTGYFVDTKV-------------  169 (295)
T ss_dssp             C-TTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-----EESSEEEEEECTTSCEEEEEETTT-------------
T ss_pred             C-CCCCEEEEeccccccccceeEeeec--CCcEEEEee-----ccCCcceeeecCCCceEEEeeccc-------------
Confidence            8 79999998642      1 256665  345555432     466899999999755799999864             


Q ss_pred             cCCCceEEEEcCC--C----CeEEEee---cCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCC-CC
Q 048181          175 NDSTGRLLSYNPR--S----SQVTVLL---RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQ-AK  244 (310)
Q Consensus       175 ~~~~G~l~~~d~~--~----g~~~~~~---~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~-g~  244 (310)
                          ++|++|+.+  .    ++.....   .....|.|+++|++|+ |||+....++|.+|+.+|..   .....+| ..
T Consensus       170 ----~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G~~---~~~i~lP~~~  241 (295)
T d2ghsa1         170 ----NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNH---IARYEVPGKQ  241 (295)
T ss_dssp             ----CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCE---EEEEECSCSB
T ss_pred             ----ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCCCcE---eeEecCCCCc
Confidence                567776532  1    2222222   2345799999999997 99999999999999977532   1124555 35


Q ss_pred             CceeeeCCCCCC-cEEEEEec
Q 048181          245 PHNIKRNPGLLQ-TFWEAAII  264 (310)
Q Consensus       245 Pdgl~~d~~~dG-~l~va~~~  264 (310)
                      |..+++..+ |+ .|||+...
T Consensus       242 ~T~~~FGG~-d~~~LyvTta~  261 (295)
T d2ghsa1         242 TTCPAFIGP-DASRLLVTSAR  261 (295)
T ss_dssp             EEEEEEEST-TSCEEEEEEBC
T ss_pred             eEEEEEeCC-CCCEEEEEECC
Confidence            889999631 43 69998654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.34  E-value=2.2e-09  Score=91.51  Aligned_cols=194  Identities=15%  Similarity=0.161  Sum_probs=128.4

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEE-EEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAF-YTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH  102 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~-~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d  102 (310)
                      ++++++++   .|.+++++|||+.+ +++..+++|..++.......-..                   +....|.+++++
T Consensus        25 ~~~i~~g~---~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~-------------------~~~~~~~~~~~~   82 (301)
T d1l0qa2          25 TATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-------------------PAGSSPQGVAVS   82 (301)
T ss_dssp             EEEEECSS---SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-------------------ECSSSEEEEEEC
T ss_pred             EEEEECCC---CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee-------------------eccccccccccc
Confidence            44566653   69999999999855 45667899999998754321110                   123468899997


Q ss_pred             cCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceE
Q 048181          103 YATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRL  181 (310)
Q Consensus       103 ~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l  181 (310)
                      .....++++..... +..++..+++.......     ...+..+++++++..++++...                 ++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~dg~~~~~~~~~-----------------~~~~  140 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------DKTV  140 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEE
T ss_pred             cccccccccccccceeeecccccceeeeeccc-----cccceEEEeecCCCeeeeeecc-----------------ccce
Confidence            44445777665544 67778777654433222     2346789999964455555432                 2456


Q ss_pred             EEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCc-EEE
Q 048181          182 LSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQT-FWE  260 (310)
Q Consensus       182 ~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~-l~v  260 (310)
                      ..++..+++..........|..++++++++.+|++......+..+.....  ...........|.+++++.  +|+ +|+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~g~~~~v  216 (301)
T d1l0qa2         141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN--SVIDTVKVEAAPSGIAVNP--EGTKAYV  216 (301)
T ss_dssp             EEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEECSSEEEEEEECT--TSSEEEE
T ss_pred             eeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccce--eeeecccccCCcceeeccc--ccccccc
Confidence            66777667666556666789999999999999999888887777765431  1111133445689999999  885 567


Q ss_pred             EEecC
Q 048181          261 AAIIT  265 (310)
Q Consensus       261 a~~~~  265 (310)
                      +....
T Consensus       217 ~~~~~  221 (301)
T d1l0qa2         217 TNVDK  221 (301)
T ss_dssp             EEECS
T ss_pred             ccccc
Confidence            66543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.25  E-value=1.2e-08  Score=86.75  Aligned_cols=204  Identities=15%  Similarity=0.168  Sum_probs=133.5

Q ss_pred             CCcceEEEccCCCEEEEE-eCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVGGAFYTG-VADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d-~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ..|++++++++|..+++. ..++.+..++...+.....                   ......|..+++.+....++++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-------------------VKTGKSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSSSEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccccceeeecccccceeeee-------------------ccccccceEEEeecCCCeeeeee
Confidence            479999999998755554 4556677777665432111                   01234577888874344566665


Q ss_pred             CCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          113 AYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       113 ~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      ... .+..++..+++......     ....|..++++++...+|++....                 +.+..++....+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  192 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVS-----VGRSPKGIAVTPDGTKVYVANFDS-----------------MSISVIDTVTNSV  192 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEE-----CCSSEEEEEECTTSSEEEEEETTT-----------------TEEEEEETTTTEE
T ss_pred             ccccceeeeeccccceeeecc-----cCCCceEEEeeccccceeeecccc-----------------cccccccccceee
Confidence            543 36777777665433222     124578899999766788876542                 3444555444554


Q ss_pred             EEeecCCCCCceeEEccCCCEEEEEec--CCCeEEEEEecCCCCCcee-eecCCCCCceeeeCCCCCCc-EEEEEecCCC
Q 048181          192 TVLLRNLTGPAGVAISVDSSFLLVSEF--TGNRTLKYWLRGPRANSFD-IINFQAKPHNIKRNPGLLQT-FWEAAIITRQ  267 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~dg~~Lyv~d~--~~~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~~~dG~-l~va~~~~~~  267 (310)
                      .........|++++++++|+.+|++..  ..++|+.+++..   ++.. .......|.++++++  ||+ |||+....+ 
T Consensus       193 ~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t---~~~~~~~~~~~~~~~va~sp--dg~~l~va~~~~~-  266 (301)
T d1l0qa2         193 IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NKITARIPVGPDPAGIAVTP--DGKKVYVALSFCN-  266 (301)
T ss_dssp             EEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---TEEEEEEECCSSEEEEEECT--TSSEEEEEETTTT-
T ss_pred             eecccccCCcceeeccccccccccccccceeeeeeeeecCC---CeEEEEEcCCCCEEEEEEeC--CCCEEEEEECCCC-
Confidence            444444567899999999999998764  446899888753   2221 122334699999999  996 789987653 


Q ss_pred             CCCCCceeeEEEC-CCCcEEEEEec
Q 048181          268 PAGTPVPIGQRIS-AFGAVLDTISF  291 (310)
Q Consensus       268 ~~~~~~~~v~~~~-~~G~~~~~~~~  291 (310)
                             .+.++| .+|+++..+..
T Consensus       267 -------~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         267 -------TVSVIDTATNTITATMAV  284 (301)
T ss_dssp             -------EEEEEETTTTEEEEEEEC
T ss_pred             -------eEEEEECCCCeEEEEEeC
Confidence                   788899 57999998865

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=2e-08  Score=86.82  Aligned_cols=240  Identities=11%  Similarity=0.138  Sum_probs=131.4

Q ss_pred             eEEEeCCCCCCCcceEEEccCCCEEEEEe-CCCeEEEEE--CCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEE
Q 048181           24 FTKILFPPKAFGGESIAFEPVGGAFYTGV-ADGRILKYQ--APDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLA  100 (310)
Q Consensus        24 ~~~~~~~~~~~~Pegia~d~~G~l~~~d~-~~g~I~r~~--~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla  100 (310)
                      ++.++.++   .|.+|++.|||+.+|+.. .+++|..++  .++....+...                 ......|.+++
T Consensus        30 ~~~~~~~~---~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~-----------------~~~~~~p~~l~   89 (333)
T d1ri6a_          30 TQVVDVPG---QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE-----------------SALPGSLTHIS   89 (333)
T ss_dssp             EEEEECSS---CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-----------------EECSSCCSEEE
T ss_pred             EEEEcCCC---CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee-----------------cccCCCceEEE
Confidence            44556664   589999999998666554 478777654  33322221100                 12334688999


Q ss_pred             EecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCc----cCcc---ce----
Q 048181          101 LHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGV----YDFR---TI----  168 (310)
Q Consensus       101 ~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~----~~~~---~~----  168 (310)
                      ++++...||+++...+ +..++.+............  ....|.++++++++..+|+++....    +...   ..    
T Consensus        90 ~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  167 (333)
T d1ri6a_          90 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD  167 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred             EcCCCCEEeecccCCCceeeeccccccceecccccC--CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeee
Confidence            9844446888876544 5555554443322222111  1235678889986445666654321    0000   00    


Q ss_pred             eE----------eeeecCCCceE-E------------EEcCCCCeEEE---ee------cCCCCCceeEEccCCCEEEEE
Q 048181          169 VK----------LNITNDSTGRL-L------------SYNPRSSQVTV---LL------RNLTGPAGVAISVDSSFLLVS  216 (310)
Q Consensus       169 ~~----------~~~~~~~~G~l-~------------~~d~~~g~~~~---~~------~~l~~pnGIa~~~dg~~Lyv~  216 (310)
                      ..          ..+...+++.. +            .++........   +.      .....|.++++++|++++|++
T Consensus       168 ~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~  247 (333)
T d1ri6a_         168 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC  247 (333)
T ss_dssp             EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred             ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeee
Confidence            00          00111112211 1            11111111111   00      123457789999999999999


Q ss_pred             ecCCCeEEEEEecCCCCCceee---ecCCCCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECC-CCcEEEEEec
Q 048181          217 EFTGNRTLKYWLRGPRANSFDI---INFQAKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISF  291 (310)
Q Consensus       217 d~~~~~I~~~~~~~~~~g~~~~---~~l~g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~  291 (310)
                      ....+.+..|.++.. ......   ....+.|.++++++  ||+ |||+.....      .-.+.++|. .|++-..-..
T Consensus       248 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~a~sp--DGk~l~va~~~~~------~v~v~~id~~tG~l~~~~~~  318 (333)
T d1ri6a_         248 DRTASLITVFSVSED-GSVLSKEGFQPTETQPRGFNVDH--SGKYLIAAGQKSH------HISVYEIVGEQGLLHEKGRY  318 (333)
T ss_dssp             ETTTTEEEEEEECTT-SCCEEEEEEEECSSSCCCEEECT--TSSEEEEECTTTC------EEEEEEEETTTTEEEEEEEE
T ss_pred             cccCCeEEEEEEcCC-CCEEEEEEEeCCCCCeeEEEEeC--CCCEEEEEECCCC------eEEEEEEECCCCcEEEEEec
Confidence            999998888887643 222222   22234699999999  997 677755432      124556786 5877655556


Q ss_pred             CCC
Q 048181          292 EAQ  294 (310)
Q Consensus       292 p~~  294 (310)
                      |.|
T Consensus       319 ~~g  321 (333)
T d1ri6a_         319 AVG  321 (333)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            655

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.12  E-value=8.5e-09  Score=95.58  Aligned_cols=177  Identities=16%  Similarity=0.163  Sum_probs=99.3

Q ss_pred             CCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec---CC
Q 048181           30 PPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY---AT  105 (310)
Q Consensus        30 ~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~---~~  105 (310)
                      ..+|..|.+|+|.++|++|++.-..|+|++++++++ .+.+......           .......+...||++|+   .+
T Consensus        23 a~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~-----------~~~~~ge~GLLgia~~Pdf~~n   91 (450)
T d1crua_          23 LSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEI-----------VNDADGQNGLLGFAFHPDFKNN   91 (450)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-----------CCCTTSSCSEEEEEECTTTTTS
T ss_pred             ECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCcc-----------ccccCCCCceeeEEeCCCCccC
Confidence            446889999999999998888877899999987654 3333321100           00011223457899984   36


Q ss_pred             CeEEEEeC---------C--Cc--EEEEe--CCCCeE---EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccC--c
Q 048181          106 RQLYIADA---------Y--SG--LLVVG--PNGRLA---TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYD--F  165 (310)
Q Consensus       106 g~LyVad~---------~--~g--i~~id--~~~~~~---~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~--~  165 (310)
                      +.+|++-.         .  ..  +.++.  ......   +.+........-.+-..|++++ +|.|||+-......  .
T Consensus        92 ~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~  170 (450)
T d1crua_          92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLA  170 (450)
T ss_dssp             CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGG
T ss_pred             CEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCccccc
Confidence            88999632         0  11  33333  222111   1222222222223456899999 59999985432100  0


Q ss_pred             c-------ceeE------eeeecCCCceEEEEcCCCCe-----------EEEeecCCCCCceeEEccCCCEEEEEecC
Q 048181          166 R-------TIVK------LNITNDSTGRLLSYNPRSSQ-----------VTVLLRNLTGPAGVAISVDSSFLLVSEFT  219 (310)
Q Consensus       166 ~-------~~~~------~~~~~~~~G~l~~~d~~~g~-----------~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~  219 (310)
                      .       ....      .--.....|+|+|++++...           .++...++..|.|++|+|+|+ ||++|-.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G  247 (450)
T d1crua_         171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQG  247 (450)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEEC
T ss_pred             ccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeecccc
Confidence            0       0000      00001234788888765321           134666778888888888775 7887753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.07  E-value=9e-09  Score=92.57  Aligned_cols=231  Identities=10%  Similarity=0.014  Sum_probs=124.7

Q ss_pred             CCcceEEEccCCCEEEEEe---CCCeEEEEE--CCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           34 FGGESIAFEPVGGAFYTGV---ADGRILKYQ--APDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~---~~g~I~r~~--~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      ..|..++++++|+..|+..   .++.+..+.  ..+.. ..+... .....   ++............|+++++++.+..
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~q~~~h~h~v~~sPdG~~  158 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS-ETGKL---EKNVQNYEYQENTGIHGMVFDPTETY  158 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC-TTCCE---EEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeee-eccee---cCcccCcccCCCCcceEEEECCCCCE
Confidence            3699999999987555433   245555432  22222 111110 00000   00000000123457899999854456


Q ss_pred             EEEEeCCC-cEEEEeCC-CCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181          108 LYIADAYS-GLLVVGPN-GRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       108 LyVad~~~-gi~~id~~-~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                      ||++|.+. .|++++.+ .+............+-..|..++++|++..+|+++...                 ++|..|+
T Consensus       159 l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~-----------------~~V~v~~  221 (365)
T d1jofa_         159 LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG-----------------NRICEYV  221 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT-----------------TEEEEEE
T ss_pred             EEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCC-----------------CEEEEEE
Confidence            99998765 46665432 23333222211112235789999999644678876532                 3444433


Q ss_pred             C--CCCeEEEe------e------------cCCCCCceeEEccCCCEEEEEecCCC-----eEEEEEecCCCCCcee---
Q 048181          186 P--RSSQVTVL------L------------RNLTGPAGVAISVDSSFLLVSEFTGN-----RTLKYWLRGPRANSFD---  237 (310)
Q Consensus       186 ~--~~g~~~~~------~------------~~l~~pnGIa~~~dg~~Lyv~d~~~~-----~I~~~~~~~~~~g~~~---  237 (310)
                      .  .+......      .            .....+..|+++|||++||++....+     .|..|.++.  .+...   
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~--~g~~~~~~  299 (365)
T d1jofa_         222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD--CGSIEKQL  299 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT--TSCEEEEE
T ss_pred             ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC--CCceeeEe
Confidence            2  22211110      0            01124568999999999999975433     477777753  23322   


Q ss_pred             -eec---CCCCCceeeeCCCCCCc-EEEEEecCCCCCCCCceeeEEECCC-CcEEEEEecCCC
Q 048181          238 -IIN---FQAKPHNIKRNPGLLQT-FWEAAIITRQPAGTPVPIGQRISAF-GAVLDTISFEAQ  294 (310)
Q Consensus       238 -~~~---l~g~Pdgl~~d~~~dG~-l~va~~~~~~~~~~~~~~v~~~~~~-G~~~~~~~~p~~  294 (310)
                       +..   .-+.|.+|+++++ +|. |||+.....      .-.+.+++.+ ++.+.+++.|.+
T Consensus       300 ~~~~~~~~G~~p~~i~~~p~-~G~~l~va~~~s~------~v~v~~~~~~~l~~~~~~~vp~p  355 (365)
T d1jofa_         300 FLSPTPTSGGHSNAVSPCPW-SDEWMAITDDQEG------WLEIYRWKDEFLHRVARVRIPEP  355 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTT-CTTEEEEECSSSC------EEEEEEEETTEEEEEEEEECCST
T ss_pred             EeeEEEcCCCCccEEEecCC-CCCEEEEEeCCCC------eEEEEEEeCCcCcEEEEEECCCC
Confidence             111   1246999999841 676 788876653      1245566655 467788888865

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.02  E-value=4.4e-08  Score=87.95  Aligned_cols=170  Identities=8%  Similarity=0.042  Sum_probs=103.0

Q ss_pred             CCcceEEEccCCC-EEEEEeCCCeEEEEEC--CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           34 FGGESIAFEPVGG-AFYTGVADGRILKYQA--PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        34 ~~Pegia~d~~G~-l~~~d~~~g~I~r~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      .+|.+++++|+|+ +|+++....+|+.++.  .+.......               .........|.++++++....+|+
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~---------------~~~~~~g~gPr~i~f~pdg~~~yv  209 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---------------VDAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---------------EECSSTTCCEEEEEECTTSSEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc---------------eeecCCCCceEEEEECCCCceEEE
Confidence            4688999999997 6666777788887753  343332210               001123468999999854456888


Q ss_pred             EeCCC-cEEEEeCCCCeE---EEeec--c----------CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181          111 ADAYS-GLLVVGPNGRLA---TQLAT--G----------AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus       111 ad~~~-gi~~id~~~~~~---~~~~~--~----------~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      ++... .|..++.+++..   .....  .          ........+.+++++|++..+|+++......          
T Consensus       210 ~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~----------  279 (365)
T d1jofa_         210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE----------  279 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT----------
T ss_pred             eccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCc----------
Confidence            87654 466666543321   11110  0          0112234577899999755788886432110          


Q ss_pred             cCCCce--EEEEcCCCCeEEEe------ecCCCCCceeEEcc-CCCEEEEEecCCCeEEEEEecCC
Q 048181          175 NDSTGR--LLSYNPRSSQVTVL------LRNLTGPAGVAISV-DSSFLLVSEFTGNRTLKYWLRGP  231 (310)
Q Consensus       175 ~~~~G~--l~~~d~~~g~~~~~------~~~l~~pnGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~~  231 (310)
                        ..+.  .++++.. +.+...      ......|++|+++| +|++|||++...+.|..|++++.
T Consensus       280 --~~~~i~~~~~~~~-g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         280 --LQGYIAGFKLRDC-GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             --SCCEEEEEEECTT-SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             --cceEEEEEEecCC-CceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence              1112  3444432 322211      12346899999998 89999999999999999988754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.02  E-value=5.3e-08  Score=84.04  Aligned_cols=104  Identities=10%  Similarity=-0.021  Sum_probs=71.0

Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEeCCCc
Q 048181           38 SIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIADAYSG  116 (310)
Q Consensus        38 gia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad~~~g  116 (310)
                      |+|+.++|..+++...++.|..+|.+.+...-...                 .+....|.++++. ++| .+||+....+
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~-----------------~~~~~~p~~l~~s-pDG~~l~v~~~~~~   62 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-----------------MPDKFGPGTAMMA-PDNRTAYVLNNHYG   62 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE-----------------CSSCCSSCEEEEC-TTSSEEEEEETTTT
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE-----------------cCCCCCcceEEEC-CCCCEEEEEECCCC
Confidence            56888899988888889999999998653221100                 1233468899997 555 5789876544


Q ss_pred             -EEEEeCCCCeEEEeec--cCCCccccCccceEEeCCCCeEEEEcC
Q 048181          117 -LLVVGPNGRLATQLAT--GAEGQAFHFLDGLDVDQGTGVVYFTDA  159 (310)
Q Consensus       117 -i~~id~~~~~~~~~~~--~~~g~~~~~pndvavd~~~G~lyvtd~  159 (310)
                       |..+|.++++......  .........|.++++++++..+|+++.
T Consensus        63 ~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             cEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence             9999999886543221  112223456889999997557888763

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.02  E-value=1.8e-07  Score=80.21  Aligned_cols=147  Identities=8%  Similarity=-0.025  Sum_probs=90.9

Q ss_pred             EEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEeCCCc-EEEEeCCCC
Q 048181           48 FYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIADAYSG-LLVVGPNGR  125 (310)
Q Consensus        48 ~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad~~~g-i~~id~~~~  125 (310)
                      +++...+++|..+|.......-..                ........|.+++++ ++| .|||+....+ |..+|.+++
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i----------------~~~~~~~~~~~i~~s-pDg~~l~v~~~~~~~v~v~D~~t~   66 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVI----------------TIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTG   66 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEE----------------ECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEE----------------ECCCCCCCccEEEEC-CCCCEEEEEECCCCeEEEEECCCC
Confidence            555666788888887754321100                011234568899997 565 5788865544 999999987


Q ss_pred             eEEEeecc-CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCcee
Q 048181          126 LATQLATG-AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGV  204 (310)
Q Consensus       126 ~~~~~~~~-~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGI  204 (310)
                      +....... ........+.++++++++..+|++........      .........+..+|..+++..........|.++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  140 (337)
T d1pbyb_          67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL------THFEVQPTRVALYDAETLSRRKAFEAPRQITML  140 (337)
T ss_dssp             CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS------SCEEECCCEEEEEETTTTEEEEEEECCSSCCCE
T ss_pred             cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCccee------eeccccccceeeccccCCeEEEeccccCCceEE
Confidence            75432221 22234567889999997567777754321000      001123456777887777766555555678888


Q ss_pred             EEccCCCEEEEEe
Q 048181          205 AISVDSSFLLVSE  217 (310)
Q Consensus       205 a~~~dg~~Lyv~d  217 (310)
                      ++++||+++|++.
T Consensus       141 ~~s~dg~~l~~~~  153 (337)
T d1pbyb_         141 AWARDGSKLYGLG  153 (337)
T ss_dssp             EECTTSSCEEEES
T ss_pred             EEcCCCCEEEEEc
Confidence            8888888887753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.89  E-value=6e-08  Score=88.94  Aligned_cols=186  Identities=10%  Similarity=-0.071  Sum_probs=114.6

Q ss_pred             cceEEEccC-CCEE-EEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           36 GESIAFEPV-GGAF-YTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        36 Pegia~d~~-G~l~-~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      |.....+.+ .+++ ++...+++|.-++.++....-..                   +....|+++++.++..+||+++.
T Consensus        21 ~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~-------------------~~g~~~~~v~fSpDG~~l~~~s~   81 (432)
T d1qksa2          21 PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVL-------------------DTGYAVHISRLSASGRYLFVIGR   81 (432)
T ss_dssp             CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEE-------------------ECSSCEEEEEECTTSCEEEEEET
T ss_pred             CCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEE-------------------eCCCCeeEEEECCCCCEEEEEcC
Confidence            333334433 3454 55567889999998854321110                   12346999999854446788876


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEE----eCCCC-eEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDV----DQGTG-VVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvav----d~~~G-~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      ...+..+|.++++.........   ...+.++++    +|+ | .+|++...                 ++.+..+|..+
T Consensus        82 dg~v~~~d~~t~~~~~~~~i~~---~~~~~~~~~s~~~SpD-G~~l~vs~~~-----------------~~~v~i~d~~t  140 (432)
T d1qksa2          82 DGKVNMIDLWMKEPTTVAEIKI---GSEARSIETSKMEGWE-DKYAIAGAYW-----------------PPQYVIMDGET  140 (432)
T ss_dssp             TSEEEEEETTSSSCCEEEEEEC---CSEEEEEEECCSTTCT-TTEEEEEEEE-----------------TTEEEEEETTT
T ss_pred             CCCEEEEEeeCCCceEEEEEec---CCCCCCeEEecccCCC-CCEEEEEcCC-----------------CCeEEEEeCcc
Confidence            6668889987654322221111   122345544    554 6 57887643                 35677777776


Q ss_pred             CeEEEeec------------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCC
Q 048181          189 SQVTVLLR------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGL  254 (310)
Q Consensus       189 g~~~~~~~------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~  254 (310)
                      +++.....            .-..+.+|++++||+.++++....++|+.++....+  ..++  ......|.++++++  
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~--~~~~~~i~~g~~~~~~~~sp--  216 (432)
T d1qksa2         141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEISAERFLHDGGLDG--  216 (432)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEEECCSSEEEEEECT--
T ss_pred             ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC--cceEEEEcccCccccceECC--
Confidence            66543321            123456789999999999999999999999875422  2222  22234689999999  


Q ss_pred             CCc-EEEEEecC
Q 048181          255 LQT-FWEAAIIT  265 (310)
Q Consensus       255 dG~-l~va~~~~  265 (310)
                      ||+ ++++....
T Consensus       217 dg~~~~va~~~~  228 (432)
T d1qksa2         217 SHRYFITAANAR  228 (432)
T ss_dssp             TSCEEEEEEGGG
T ss_pred             CCCEEEEecccc
Confidence            997 56776554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=6.9e-07  Score=76.70  Aligned_cols=177  Identities=14%  Similarity=0.128  Sum_probs=106.1

Q ss_pred             CEEEEEeCCCeEEEEECC--CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCc-E--EEE
Q 048181           46 GAFYTGVADGRILKYQAP--DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG-L--LVV  120 (310)
Q Consensus        46 ~l~~~d~~~g~I~r~~~~--g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~g-i--~~i  120 (310)
                      .+|+++..+++|+.++.+  +..+.+..                  ....+.|.+|+++++...||++....+ |  +.+
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~------------------~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i   66 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQV------------------VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   66 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEE------------------EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEE------------------EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            456777788888888743  44443321                  123457889999844345888876543 4  445


Q ss_pred             eCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE---EeecC
Q 048181          121 GPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT---VLLRN  197 (310)
Q Consensus       121 d~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~---~~~~~  197 (310)
                      +..+...+......   ....|.+++++|++..||+++...                 +.+..++.......   .....
T Consensus        67 ~~~~~~~~~~~~~~---~~~~p~~l~~spDg~~l~v~~~~~-----------------~~v~~~~~~~~~~~~~~~~~~~  126 (333)
T d1ri6a_          67 APDDGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNA-----------------GNVSVTRLEDGLPVGVVDVVEG  126 (333)
T ss_dssp             CTTTCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTT-----------------TEEEEEEEETTEEEEEEEEECC
T ss_pred             eCCCCcEEEeeecc---cCCCceEEEEcCCCCEEeecccCC-----------------CceeeeccccccceecccccCC
Confidence            55544433332211   124578999999644577776432                 33433332222222   22334


Q ss_pred             CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee---ecC--CCCCceeeeCCCCCCcE-EEEE
Q 048181          198 LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI---INF--QAKPHNIKRNPGLLQTF-WEAA  262 (310)
Q Consensus       198 l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~---~~l--~g~Pdgl~~d~~~dG~l-~va~  262 (310)
                      ...|.++++++|++++++++.....|..|+...........   ...  ...|..++++.  ++.. |++.
T Consensus       127 ~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~--~~~~~~~~~  195 (333)
T d1ri6a_         127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP--NEQYAYCVN  195 (333)
T ss_dssp             CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT--TSSEEEEEE
T ss_pred             CccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEec--cceeEEeec
Confidence            56789999999999999999999999999876432111111   111  24588999998  8765 4443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.75  E-value=4.8e-07  Score=77.81  Aligned_cols=142  Identities=12%  Similarity=0.030  Sum_probs=88.0

Q ss_pred             eEEEecCCCeEEE-EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecC
Q 048181           98 GLALHYATRQLYI-ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITND  176 (310)
Q Consensus        98 Gla~d~~~g~LyV-ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~  176 (310)
                      |+++. .+++.++ +...+.|..+|.+++++........   -..|.+++++|++..+|+++..                
T Consensus         1 g~a~~-~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~---~~~p~~l~~spDG~~l~v~~~~----------------   60 (346)
T d1jmxb_           1 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNH----------------   60 (346)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETT----------------
T ss_pred             CccCC-CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC---CCCcceEEECCCCCEEEEEECC----------------
Confidence            45664 5666555 5555669999999887543222211   2357899999963457888754                


Q ss_pred             CCceEEEEcCCCCeEEEeecC-------CCCCceeEEccCCCEEEEEecC-----------CCeEEEEEecCCCC-Ccee
Q 048181          177 STGRLLSYNPRSSQVTVLLRN-------LTGPAGVAISVDSSFLLVSEFT-----------GNRTLKYWLRGPRA-NSFD  237 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~-------l~~pnGIa~~~dg~~Lyv~d~~-----------~~~I~~~~~~~~~~-g~~~  237 (310)
                       +++|+.+|..+++.......       ...|.+++++|||++||++...           ...+..++...... ....
T Consensus        61 -~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  139 (346)
T d1jmxb_          61 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  139 (346)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE
Confidence             36899999888866543321       2368999999999999998642           34556665542110 0011


Q ss_pred             eecCCCCCceeeeCCCCCCcEEEEE
Q 048181          238 IINFQAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       238 ~~~l~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      ....+.....+....  +|.+|++.
T Consensus       140 ~~~~~~~~~~~~~~~--~~~~~~~~  162 (346)
T d1jmxb_         140 TFPMPRQVYLMRAAD--DGSLYVAG  162 (346)
T ss_dssp             EEECCSSCCCEEECT--TSCEEEES
T ss_pred             eeeccCceEEEEecC--CCEEEEeC
Confidence            112233345566666  78888764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.72  E-value=7.2e-06  Score=74.62  Aligned_cols=170  Identities=6%  Similarity=-0.049  Sum_probs=108.6

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      .+++++..   ..|.++++.|||+.+|+...++.|..++.... ......                  .+....|.++++
T Consensus        54 v~~~~~~g---~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~------------------i~~~~~~~~~~~  112 (432)
T d1qksa2          54 IKTVLDTG---YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE------------------IKIGSEARSIET  112 (432)
T ss_dssp             EEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE------------------EECCSEEEEEEE
T ss_pred             EEEEEeCC---CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE------------------EecCCCCCCeEE
Confidence            34455543   36999999999998888888899999997632 211110                  123456778877


Q ss_pred             ec---CCC-eEEEEeCC-CcEEEEeCCCCeEEEeecc----CCC---ccccCccceEEeCCCCeEEEEcCCCccCcccee
Q 048181          102 HY---ATR-QLYIADAY-SGLLVVGPNGRLATQLATG----AEG---QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIV  169 (310)
Q Consensus       102 d~---~~g-~LyVad~~-~gi~~id~~~~~~~~~~~~----~~g---~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~  169 (310)
                      .+   ++| .||++... ..+..+|.++++.......    ...   .+...+..++.++++..+|++..          
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~----------  182 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK----------  182 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET----------
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc----------
Confidence            42   255 57887654 3488899888765433211    000   12223445666774334455533          


Q ss_pred             EeeeecCCCceEEEEcCCCCeEEEe--ecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          170 KLNITNDSTGRLLSYNPRSSQVTVL--LRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       170 ~~~~~~~~~G~l~~~d~~~g~~~~~--~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                             ..+.++.+|..+.+...+  +..-..|.+++++|||+++|++....+.+..++.+.
T Consensus       183 -------~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         183 -------ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             -------TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             -------cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence                   346788887765543222  233457899999999999999999999999888753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.67  E-value=1e-05  Score=69.94  Aligned_cols=229  Identities=8%  Similarity=-0.073  Sum_probs=130.5

Q ss_pred             eEEEccCCCEEEEEe----------CCCeEEEEECCCce-E-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           38 SIAFEPVGGAFYTGV----------ADGRILKYQAPDGF-T-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        38 gia~d~~G~l~~~d~----------~~g~I~r~~~~g~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      +++|.|||+.+|+..          .++.|..++..++. . .+....         .    ........|.++++.+..
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~---------~----~~~~~~~~~~~~~~s~dg  117 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD---------A----PRFLVGTYPWMTSLTPDG  117 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT---------C----CCCCBSCCGGGEEECTTS
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCC---------c----ceeecCCCCceEEEecCC
Confidence            799999998665532          24678888877442 2 221100         0    011234578899998556


Q ss_pred             CeEEEEeCCC--cEEEEeCCCCeEEEeeccCCC---ccccCccceEEeCCCCeEEEEcCCCccC---------cc-----
Q 048181          106 RQLYIADAYS--GLLVVGPNGRLATQLATGAEG---QAFHFLDGLDVDQGTGVVYFTDASGVYD---------FR-----  166 (310)
Q Consensus       106 g~LyVad~~~--gi~~id~~~~~~~~~~~~~~g---~~~~~pndvavd~~~G~lyvtd~~~~~~---------~~-----  166 (310)
                      +.+|+++...  .+..++..+++..........   .+......+++.+++..++++.......         ..     
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  197 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI  197 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBC
T ss_pred             CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceeccee
Confidence            6788887543  366678777654322221110   1122334577887544555554332100         00     


Q ss_pred             -cee-----EeeeecCCCceEEEEcCCCCeEEEeecC-------------CCCCceeEEccCCCEEEEEecCC-------
Q 048181          167 -TIV-----KLNITNDSTGRLLSYNPRSSQVTVLLRN-------------LTGPAGVAISVDSSFLLVSEFTG-------  220 (310)
Q Consensus       167 -~~~-----~~~~~~~~~G~l~~~d~~~g~~~~~~~~-------------l~~pnGIa~~~dg~~Lyv~d~~~-------  220 (310)
                       ...     ..+.....+|+++.++..++++..+...             ......+++++|++.+|++....       
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  277 (355)
T d2bbkh_         198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  277 (355)
T ss_dssp             SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             eeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC
Confidence             000     0112234567788888766655433210             12345699999999999876433       


Q ss_pred             --CeEEEEEecCCCCCcee-eecCCCCCceeeeCCCCCCc--EEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecC
Q 048181          221 --NRTLKYWLRGPRANSFD-IINFQAKPHNIKRNPGLLQT--FWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFE  292 (310)
Q Consensus       221 --~~I~~~~~~~~~~g~~~-~~~l~g~Pdgl~~d~~~dG~--l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p  292 (310)
                        +.|+.++...   ++.. .......|.++++++  ||+  +|++....        ..+..+|. .|++++.+...
T Consensus       278 ~~~~v~v~d~~t---~~~~~~~~~~~~~~~~a~sp--DG~~~l~v~~~~d--------~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         278 ASRFVVVLDAKT---GERLAKFEMGHEIDSINVSQ--DEKPLLYALSTGD--------KTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             CEEEEEEEETTT---CCEEEEEEEEEEECEEEECC--SSSCEEEEEETTT--------TEEEEEETTTCCEEEEECCC
T ss_pred             CCCeEEEEeCCC---CcEEEEecCCCCEEEEEEcC--CCCeEEEEEECCC--------CEEEEEECCCCCEEEEEeCc
Confidence              4677777653   2211 112224588999999  996  56665443        37888995 79999998755

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.63  E-value=3.3e-06  Score=77.23  Aligned_cols=205  Identities=14%  Similarity=0.056  Sum_probs=119.4

Q ss_pred             CcceEEE--ccCCC-EEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           35 GGESIAF--EPVGG-AFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        35 ~Pegia~--d~~G~-l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      .|.....  .+||+ +|+++..+++|-+++.+.... .+.                  ..+....|+|+++.+...++||
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii------------------~iP~g~gphgi~~spdg~t~YV  132 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKIT------------------HIPNVQAIHGLRLQKVPKTNYV  132 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE------------------ECTTCCCEEEEEECCSSBCCEE
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEE------------------ecCCCCCccceEEeccCCEEEE
Confidence            3544333  36786 556677899999999885432 211                  1245668999999744456788


Q ss_pred             EeCCC-c------------------EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCcc--C-----
Q 048181          111 ADAYS-G------------------LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVY--D-----  164 (310)
Q Consensus       111 ad~~~-g------------------i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~--~-----  164 (310)
                      +.... .                  +..+|.++.++..-. ..+    ..|.+++++++++.+|++.....-  .     
T Consensus       133 ~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI-~v~----~~p~~v~~spdGk~a~vt~~nse~~~~id~~t  207 (441)
T d1qnia2         133 FCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV-IVD----GNLDNTDADYTGKYATSTCYNSERAVDLAGTM  207 (441)
T ss_dssp             EEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE-EES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHT
T ss_pred             EeccCCcccccCcccccccccccceEEeecCccceeeEEE-ecC----CCccceEECCCCCEEEEEecCCCceEEEeccC
Confidence            65321 1                  244676664432111 111    247899999976678888654210  0     


Q ss_pred             --ccceeEe--------------eeecCCCceEEEEc-CCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          165 --FRTIVKL--------------NITNDSTGRLLSYN-PRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       165 --~~~~~~~--------------~~~~~~~G~l~~~d-~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                        ..++...              ......++ +..++ ....++...+..-..|.|++++|||+++|++....+.|..++
T Consensus       208 ~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~-v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d  286 (441)
T d1qnia2         208 RNDRDWVVVFNVERIAAAVKAGNFKTIGDSK-VPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIA  286 (441)
T ss_dssp             CSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC-CCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred             cceEEEEEeCCccceEEEecCCCEEEeCCCC-cEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEE
Confidence              0011100              01112233 33333 232333333444567999999999999999999999999999


Q ss_pred             ecCCC---CCce----ee-e--cCCCCCceeeeCCCCCCcEEEEEecC
Q 048181          228 LRGPR---ANSF----DI-I--NFQAKPHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       228 ~~~~~---~g~~----~~-~--~l~g~Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      +..-.   .+..    .+ .  .+--+|-.-++|.  +|+.|.+....
T Consensus       287 ~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~--~g~~yts~~~d  332 (441)
T d1qnia2         287 IDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG--RGNAYTTLFID  332 (441)
T ss_dssp             GGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS--SSEEEEEETTT
T ss_pred             eehhhhHhhccCCcceEEEeecccccCcccceecC--CceEEEccccc
Confidence            75210   0111    11 1  1111366678999  99999998654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.61  E-value=2.9e-06  Score=74.92  Aligned_cols=232  Identities=9%  Similarity=-0.069  Sum_probs=130.4

Q ss_pred             eEEEccCCCEEEEEe----------CCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           38 SIAFEPVGGAFYTGV----------ADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        38 gia~d~~G~l~~~d~----------~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      ++++.+||+.+|+..          .++.|..++..+....-....+.           .........|.++++.++...
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~-----------~~~~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD-----------APRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT-----------SCSCCBSCCTTSEEECTTSSC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCc-----------cceecccCCccceEECCCCCE
Confidence            799999997565543          13558888877533211110000           001123456889999754456


Q ss_pred             EEEEeCC-CcEEEEeCCCCeEEEeeccCCC---ccccCccceEEeCCCCeEEEEcCCCcc-----------Cccce-eE-
Q 048181          108 LYIADAY-SGLLVVGPNGRLATQLATGAEG---QAFHFLDGLDVDQGTGVVYFTDASGVY-----------DFRTI-VK-  170 (310)
Q Consensus       108 LyVad~~-~gi~~id~~~~~~~~~~~~~~g---~~~~~pndvavd~~~G~lyvtd~~~~~-----------~~~~~-~~-  170 (310)
                      |||++.. ..+..+|.++++..........   .+.....-++++++ |.+++.+....-           ...+. .. 
T Consensus       138 l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~D-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCP-ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA  216 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCT-TSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred             EEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCC-CCEEEEEecCCceeeeeeecccccccccceee
Confidence            8999865 4588899988775443221111   01112233566663 665554422110           00000 00 


Q ss_pred             ------eeeecCCCceEEEEcCCCCeEEEeec--C-----------CCCCceeEEccCCCEEEEEecCC--------CeE
Q 048181          171 ------LNITNDSTGRLLSYNPRSSQVTVLLR--N-----------LTGPAGVAISVDSSFLLVSEFTG--------NRT  223 (310)
Q Consensus       171 ------~~~~~~~~G~l~~~d~~~g~~~~~~~--~-----------l~~pnGIa~~~dg~~Lyv~d~~~--------~~I  223 (310)
                            ........++++.++...+.+..+..  .           ...+..++++++++.+|++....        .+|
T Consensus       217 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v  296 (368)
T d1mdah_         217 AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             EEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             cccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceE
Confidence                  00111234566667665554443321  0           12356799999999999975432        468


Q ss_pred             EEEEecCCCCCceee-ecCCCCCceeeeCCCCCCc--EEEEEecCCCCCCCCceeeEEECC-CCcEEEEEecCCC
Q 048181          224 LKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQT--FWEAAIITRQPAGTPVPIGQRISA-FGAVLDTISFEAQ  294 (310)
Q Consensus       224 ~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~--l~va~~~~~~~~~~~~~~v~~~~~-~G~~~~~~~~p~~  294 (310)
                      +.++...   ++... ......|.++++++  ||+  +|++....+        .+..+|. .||.+..+.+..+
T Consensus       297 ~v~D~~t---~~~~~~~~~~~~~~~~a~sp--DG~~~ly~s~~~~~--------~v~v~D~~tgk~~~~i~~g~~  358 (368)
T d1mdah_         297 SSVTASV---GQTSGPISNGHDSDAIIAAQ--DGASDNYANSAGTE--------VLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             EEEESSS---CCEEECCEEEEEECEEEECC--SSSCEEEEEETTTT--------EEEEEESSSCEEEEECCCCSC
T ss_pred             EEEECCC---CcEeEEecCCCceeEEEECC--CCCEEEEEEeCCCC--------eEEEEECCCCCEEEEEECCCC
Confidence            8887753   22111 12224588999999  996  678876543        6888995 6999999987643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.60  E-value=7.1e-06  Score=74.02  Aligned_cols=213  Identities=8%  Similarity=-0.082  Sum_probs=120.4

Q ss_pred             CCcceEEEccC-CCEEEE-EeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE
Q 048181           34 FGGESIAFEPV-GGAFYT-GVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA  111 (310)
Q Consensus        34 ~~Pegia~d~~-G~l~~~-d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa  111 (310)
                      ..|..+.++.+ .+++++ ...+|+|..+|...+...-..                   +....|.++++.++..+||++
T Consensus        19 ~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l-------------------~~g~~~~~vafSPDGk~l~~~   79 (426)
T d1hzua2          19 DRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI-------------------DTGYAVHISRMSASGRYLLVI   79 (426)
T ss_dssp             GSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEE-------------------ECCSSEEEEEECTTSCEEEEE
T ss_pred             cCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEE-------------------eCCCCeeEEEECCCCCEEEEE
Confidence            34555666655 345544 557899999998854321110                   123468999998444457777


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCC-ccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEG-QAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g-~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      +....+..+|.++++.........+ .+......++++|++..+|++....                 +.+..+|..+++
T Consensus        80 ~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~-----------------~~v~i~d~~~~~  142 (426)
T d1hzua2          80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP-----------------PQFAIMDGETLE  142 (426)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES-----------------SEEEEEETTTCC
T ss_pred             eCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC-----------------CeEEEEcCCccc
Confidence            7665688999887764433221111 1112223334445433567775332                 345555655554


Q ss_pred             EEEeec------------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcE
Q 048181          191 VTVLLR------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTF  258 (310)
Q Consensus       191 ~~~~~~------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l  258 (310)
                      ......            .-..+..++.++|+..++++....+++..+..................|.++++++  +|++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~  220 (426)
T d1hzua2         143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS--SHRY  220 (426)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT--TSCE
T ss_pred             eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC--CCcE
Confidence            433221            11233568888999989999888888887766532211111122234588999999  9975


Q ss_pred             E-EEEecCCCCCCCCceeeEEEC-CCCcEEEEEecC
Q 048181          259 W-EAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFE  292 (310)
Q Consensus       259 ~-va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p  292 (310)
                      + ++.....        .+..++ .+++++..+...
T Consensus       221 ~~~a~~~~~--------~~~~~~~~~~~~~~~~~~~  248 (426)
T d1hzua2         221 FMTAANNSN--------KVAVIDSKDRRLSALVDVG  248 (426)
T ss_dssp             EEEEETTCS--------EEEEEETTTTEEEEEEECS
T ss_pred             EEeeeeccc--------ceeeeecccccEEEEeccC
Confidence            5 4444432        333343 456666555543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=0.00012  Score=63.00  Aligned_cols=202  Identities=10%  Similarity=0.067  Sum_probs=119.5

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-Ee
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-AD  112 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad  112 (310)
                      .-.+++|.++|+++++...++.|..++..... .....                 +.........++++ +++.+++ +.
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~~~~~v~~~~~~-~~~~~l~s~~  160 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE-----------------LTSSAPACYALAIS-PDSKVCFSCC  160 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE-----------------EECSSSCEEEEEEC-TTSSEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEeecccccccccccccccccccc-----------------cccccccccccccc-cccccccccc
Confidence            34689999999988888889999988865322 11110                 00112233467786 5565555 44


Q ss_pred             CCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          113 AYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      ....+..++..+++.......    .....+.++++++ +..+++-.                 .+|.+..+|..+++..
T Consensus       161 ~d~~i~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~-~~~~~~~~-----------------~d~~v~i~d~~~~~~~  218 (337)
T d1gxra_         161 SDGNIAVWDLHNQTLVRQFQG----HTDGASCIDISND-GTKLWTGG-----------------LDNTVRSWDLREGRQL  218 (337)
T ss_dssp             TTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTT-SSEEEEEE-----------------TTSEEEEEETTTTEEE
T ss_pred             ccccccccccccccccccccc----ccccccccccccc-cccccccc-----------------ccccccccccccceee
Confidence            444588888887665432221    1223567888885 65544422                 2467778887766554


Q ss_pred             EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEecCCCCCCCC
Q 048181          193 VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTP  272 (310)
Q Consensus       193 ~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~  272 (310)
                      .....-...+.++++|+++.|+ +-...+.|..+++....  ......-......+++.+  +|++.++....+      
T Consensus       219 ~~~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~i~d~~~~~--~~~~~~~~~~i~~v~~s~--~g~~l~s~s~Dg------  287 (337)
T d1gxra_         219 QQHDFTSQIFSLGYCPTGEWLA-VGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAY--CGKWFVSTGKDN------  287 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEE-EEETTSCEEEEETTSSC--EEEECCCSSCEEEEEECT--TSSEEEEEETTS------
T ss_pred             cccccccceEEEEEcccccccc-eeccccccccccccccc--cccccccccccceEEECC--CCCEEEEEeCCC------
Confidence            4333334568899999998655 44567788888876421  111111223456788888  888776654432      


Q ss_pred             ceeeEEEC-CCCcEEEEE
Q 048181          273 VPIGQRIS-AFGAVLDTI  289 (310)
Q Consensus       273 ~~~v~~~~-~~G~~~~~~  289 (310)
                        .+..+| ++|+.+..+
T Consensus       288 --~i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         288 --LLNAWRTPYGASIFQS  303 (337)
T ss_dssp             --EEEEEETTTCCEEEEE
T ss_pred             --eEEEEECCCCCEEEEc
Confidence              455555 345555443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.52  E-value=4.8e-06  Score=73.45  Aligned_cols=99  Identities=7%  Similarity=-0.029  Sum_probs=67.6

Q ss_pred             ccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCC-EEEEEecCC
Q 048181          142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSS-FLLVSEFTG  220 (310)
Q Consensus       142 pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~-~Lyv~d~~~  220 (310)
                      +..++++++.+.+|++......         .......+++.+|.++++....+..-..|++++|+|||+ .||++....
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~---------~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSR---------SCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSS---------CTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             ceeEEEcCCCCEEEEEecCCCc---------eeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC
Confidence            4568899876788887533211         011233578899998887654444335689999999997 589999989


Q ss_pred             CeEEEEEecCCCCCceee-ecCCCCCceeeeCC
Q 048181          221 NRTLKYWLRGPRANSFDI-INFQAKPHNIKRNP  252 (310)
Q Consensus       221 ~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~  252 (310)
                      +.|+.||...   |+..- ..+...|.+|++-.
T Consensus       337 ~~v~v~D~~t---gk~~~~i~~g~~P~~l~~~~  366 (368)
T d1mdah_         337 EVLDIYDAAS---DQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             TEEEEEESSS---CEEEEECCCCSCCCEEECCC
T ss_pred             CeEEEEECCC---CCEEEEEECCCCCCEEEEec
Confidence            9999998753   33221 34456799998843

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.47  E-value=9.8e-06  Score=68.94  Aligned_cols=129  Identities=15%  Similarity=0.056  Sum_probs=82.3

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCC-eEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          108 LYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTG-VVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       108 LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G-~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      ++.+...+.|..+|.+++++...... . .....|.+++++|+ | .+|++...                 +|.|+.||.
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~-~-~~~~~~~~i~~spD-g~~l~v~~~~-----------------~~~v~v~D~   63 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITI-A-DAGPTPMVPMVAPG-GRIAYATVNK-----------------SESLVKIDL   63 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEEC-T-TCTTCCCCEEECTT-SSEEEEEETT-----------------TTEEEEEET
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEEC-C-CCCCCccEEEECCC-CCEEEEEECC-----------------CCeEEEEEC
Confidence            33344445688889888765332221 1 12245889999995 6 57787643                 378999998


Q ss_pred             CCCeEEEeecC------CCCCceeEEccCCCEEEEEecC-----------CCeEEEEEecCCCCCceee-ecCCCCCcee
Q 048181          187 RSSQVTVLLRN------LTGPAGVAISVDSSFLLVSEFT-----------GNRTLKYWLRGPRANSFDI-INFQAKPHNI  248 (310)
Q Consensus       187 ~~g~~~~~~~~------l~~pnGIa~~~dg~~Lyv~d~~-----------~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl  248 (310)
                      .+++.......      ...+.+++++||++++|++...           ..++..++...   +.... ......|.++
T Consensus        64 ~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~  140 (337)
T d1pbyb_          64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAFEAPRQITML  140 (337)
T ss_dssp             TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEEECCSSCCCE
T ss_pred             CCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC---CeEEEeccccCCceEE
Confidence            88876543321      2467899999999999988652           34455555432   22221 3334568999


Q ss_pred             eeCCCCCCc-EEEE
Q 048181          249 KRNPGLLQT-FWEA  261 (310)
Q Consensus       249 ~~d~~~dG~-l~va  261 (310)
                      ++++  ||. +|++
T Consensus       141 ~~s~--dg~~l~~~  152 (337)
T d1pbyb_         141 AWAR--DGSKLYGL  152 (337)
T ss_dssp             EECT--TSSCEEEE
T ss_pred             EEcC--CCCEEEEE
Confidence            9999  996 4554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.46  E-value=5.5e-05  Score=65.10  Aligned_cols=223  Identities=10%  Similarity=-0.011  Sum_probs=129.3

Q ss_pred             CCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC
Q 048181           34 FGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA  113 (310)
Q Consensus        34 ~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~  113 (310)
                      ....+++|.|+|++++++..++.|.-++.......+..                .+.........+++. ++++++++-.
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~----------------~~~~~~~~v~~v~~s-~d~~~l~~~~  121 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT----------------TIPVFSGPVKDISWD-SESKRIAAVG  121 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE----------------EEECSSSCEEEEEEC-TTSCEEEEEE
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc----------------ccccccCcccccccc-cccccccccc
Confidence            45678999999998888889999998887643211000                000112345688997 5666554422


Q ss_pred             -C-Cc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCe-EEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          114 -Y-SG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGV-VYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       114 -~-~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~-lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                       . .. +..++.++++..   ....+ +....+.++++|+ |. +++|-.                 .+|.+..+|..++
T Consensus       122 ~~~~~~~~v~~~~~~~~~---~~l~~-h~~~v~~v~~~~~-~~~~l~sgs-----------------~d~~i~i~d~~~~  179 (311)
T d1nr0a1         122 EGRERFGHVFLFDTGTSN---GNLTG-QARAMNSVDFKPS-RPFRIISGS-----------------DDNTVAIFEGPPF  179 (311)
T ss_dssp             CCSSCSEEEEETTTCCBC---BCCCC-CSSCEEEEEECSS-SSCEEEEEE-----------------TTSCEEEEETTTB
T ss_pred             cccccccccccccccccc---ccccc-ccccccccccccc-ceeeecccc-----------------ccccccccccccc
Confidence             2 22 445566654321   11222 1234578889985 65 455432                 2467888888777


Q ss_pred             eEEEeecCCC-CCceeEEccCCCEEEEEecCCCeEEEEEecCCCC-Cceee--ecC---CCCCceeeeCCCCCCcEEEEE
Q 048181          190 QVTVLLRNLT-GPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRA-NSFDI--INF---QAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       190 ~~~~~~~~l~-~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~-g~~~~--~~l---~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      +......... .-+.++++|+++.|+ +-...+.|..++...... ...+.  ...   .+....+++++  +|++.++.
T Consensus       180 ~~~~~~~~~~~~i~~v~~~p~~~~l~-~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~~~~l~tg  256 (311)
T d1nr0a1         180 KFKSTFGEHTKFVHSVRYNPDGSLFA-STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASA  256 (311)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEE
T ss_pred             ccccccccccccccccccCccccccc-cccccccccccccccccccccccccccccccccccccccccCC--CCCEEEEE
Confidence            6555444333 348999999998554 445577788887653210 00111  011   12245789999  99877665


Q ss_pred             ecCCCCCCCCceeeEEEC-CCCcEEEEEecCCCccccceeEEEecC
Q 048181          263 IITRQPAGTPVPIGQRIS-AFGAVLDTISFEAQYSTTPISEVQPFG  307 (310)
Q Consensus       263 ~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~~~~~~~t~~~~~~  307 (310)
                      ..-        +.+..+| .+|+.+..+....+.. ..+..+...+
T Consensus       257 s~D--------g~v~iwd~~t~~~~~~l~~~~~~~-~~~~~~~~~~  293 (311)
T d1nr0a1         257 SAD--------KTIKIWNVATLKVEKTIPVGTRIE-DQQLGIIWTK  293 (311)
T ss_dssp             ETT--------SEEEEEETTTTEEEEEEECCSSGG-GCEEEEEECS
T ss_pred             eCC--------CeEEEEECCCCcEEEEEECCCCcc-ceEEEEEecC
Confidence            433        2677778 5688888887664422 3344444433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.43  E-value=0.00016  Score=62.68  Aligned_cols=81  Identities=10%  Similarity=-0.096  Sum_probs=53.0

Q ss_pred             CCceeEEccCCCEEEEEec---------CCCeEEEEEecCCCCCce-eeecCCCCCceeeeCCCCCCc--EEEEEecCCC
Q 048181          200 GPAGVAISVDSSFLLVSEF---------TGNRTLKYWLRGPRANSF-DIINFQAKPHNIKRNPGLLQT--FWEAAIITRQ  267 (310)
Q Consensus       200 ~pnGIa~~~dg~~Lyv~d~---------~~~~I~~~~~~~~~~g~~-~~~~l~g~Pdgl~~d~~~dG~--l~va~~~~~~  267 (310)
                      .+..+++++|++.+|+...         ..+.|+.++...   +.. ........|.++++++  ||+  ||++....  
T Consensus       268 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t---~~~~~~~~~~~~~~~~a~sp--DG~~~l~vt~~~d--  340 (373)
T d2madh_         268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV---GQTSSQISLGHDVDAISVAQ--DGGPDLYALSAGT--  340 (373)
T ss_pred             cceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC---CcEEEEecCCCCeeEEEECC--CCCEEEEEEeCCC--
Confidence            3456788888887776543         334566666542   221 1133445689999999  997  56655443  


Q ss_pred             CCCCCceeeEEEC-CCCcEEEEEecCC
Q 048181          268 PAGTPVPIGQRIS-AFGAVLDTISFEA  293 (310)
Q Consensus       268 ~~~~~~~~v~~~~-~~G~~~~~~~~p~  293 (310)
                            ..+..+| ..|+.+.++..+.
T Consensus       341 ------~~v~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         341 ------EVLHIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             ------CeEEEEECCCCCEEEEECCCC
Confidence                  2688888 4699999997653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.42  E-value=6.5e-05  Score=65.30  Aligned_cols=195  Identities=10%  Similarity=-0.012  Sum_probs=104.4

Q ss_pred             CCcceEEEccCCC-EEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEe
Q 048181           34 FGGESIAFEPVGG-AFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIAD  112 (310)
Q Consensus        34 ~~Pegia~d~~G~-l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad  112 (310)
                      ..|.++++.++|. +|++...++.+..++.............      .      ........+..+..+ .++.+....
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~------~------~~~~~~~~~~~~~~~-~~~~~~~~~  231 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA------M------LTAAQNLLTQPAQAN-KSGRIVWPV  231 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee------c------cccCccceeeeEEEC-CCceEEEec
Confidence            4577788888775 4455667788887776643221100000      0      000111122233443 333332222


Q ss_pred             CCCcEEEEeCCCCeEEEeecc--C------CCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          113 AYSGLLVVGPNGRLATQLATG--A------EGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       113 ~~~gi~~id~~~~~~~~~~~~--~------~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      ....++.++..++........  .      .+........++++++...+|++.....        ........+.+..+
T Consensus       232 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~~~  303 (373)
T d2madh_         232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS--------AWKLHAAAKEVTSV  303 (373)
T ss_pred             CCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc--------eEEeecCCCeEEEE
Confidence            223355555554433221110  0      0001122345677775455665543321        11223345678899


Q ss_pred             cCCCCeEEEeecCCCCCceeEEccCCCE-EEEEecCCCeEEEEEecCCCCCce-ee-ecCCCCCceeeeCC
Q 048181          185 NPRSSQVTVLLRNLTGPAGVAISVDSSF-LLVSEFTGNRTLKYWLRGPRANSF-DI-INFQAKPHNIKRNP  252 (310)
Q Consensus       185 d~~~g~~~~~~~~l~~pnGIa~~~dg~~-Lyv~d~~~~~I~~~~~~~~~~g~~-~~-~~l~g~Pdgl~~d~  252 (310)
                      |..+++.......-..|++++|+|||+. ||++....+.|+.+|...   |+. .. ......|..|++..
T Consensus       304 d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t---g~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         304 TGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA---GDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             ECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC---CCEEEEECCCCCCCcEEEEec
Confidence            9888876555555567899999999986 577888889999998863   322 22 33445699999876

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.42  E-value=0.00014  Score=65.07  Aligned_cols=170  Identities=9%  Similarity=-0.031  Sum_probs=100.5

Q ss_pred             ceEEEeCCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           23 TFTKILFPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      .+++++..   ..|.++++.|||+.+|+...++.|..++.+.+. .....                  ......|.++++
T Consensus        54 ~~~~l~~g---~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~------------------i~~~~~~~~~~~  112 (426)
T d1hzua2          54 IVKVIDTG---YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE------------------IKIGIEARSVES  112 (426)
T ss_dssp             EEEEEECC---SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE------------------EECCSEEEEEEE
T ss_pred             EEEEEeCC---CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE------------------EeCCCCCcceEE
Confidence            34555554   369999999999988888888999999977432 21110                  022345677776


Q ss_pred             ec---CCC-eEEEEeCC-CcEEEEeCCCCeEEEeeccC----CCc---cccCccceEEeCCCCeEEEEcCCCccCcccee
Q 048181          102 HY---ATR-QLYIADAY-SGLLVVGPNGRLATQLATGA----EGQ---AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIV  169 (310)
Q Consensus       102 d~---~~g-~LyVad~~-~gi~~id~~~~~~~~~~~~~----~g~---~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~  169 (310)
                      ..   ++| +||++... ..+..+|.++++........    ...   +-..+..++.++++-.+|+++.          
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~----------  182 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK----------  182 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET----------
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC----------
Confidence            42   244 57777644 34777788876554332211    000   0111223444443233333332          


Q ss_pred             EeeeecCCCceEEEEcCCCCe--EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          170 KLNITNDSTGRLLSYNPRSSQ--VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       170 ~~~~~~~~~G~l~~~d~~~g~--~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                             ..+.+..++..+..  .......-..|.+++++|+|+++|++....+.+..++...
T Consensus       183 -------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         183 -------ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             -------TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             -------CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence                   23455555433222  1122334467899999999999999999999998887653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.39  E-value=1.4e-05  Score=73.35  Aligned_cols=164  Identities=13%  Similarity=0.160  Sum_probs=98.4

Q ss_pred             CCCCceeeEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEeeccCC----CccccCccceEEeCC---CCeEEEEcCCCc
Q 048181           91 PICRRTFGLALHYATRQLYIADAYS-GLLVVGPNGRLATQLATGAE----GQAFHFLDGLDVDQG---TGVVYFTDASGV  162 (310)
Q Consensus        91 ~~~~~P~Gla~d~~~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~----g~~~~~pndvavd~~---~G~lyvtd~~~~  162 (310)
                      ..+.+|.+|++. ++|+|||++... .|++++.++++.+.+.....    ...-...-|||++|+   ++.||++-+...
T Consensus        24 ~~L~~P~~la~~-pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~  102 (450)
T d1crua_          24 SNLNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (450)
T ss_dssp             CCCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCCCceEEEEe-CCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCC
Confidence            346799999996 799999999654 49999988877665543211    011123458999984   599999743110


Q ss_pred             cC--ccceeEeeeecCCCceEEE--EcCCCCe---EEEee-----cCCCCCceeEEccCCCEEEEEecC-----------
Q 048181          163 YD--FRTIVKLNITNDSTGRLLS--YNPRSSQ---VTVLL-----RNLTGPAGVAISVDSSFLLVSEFT-----------  219 (310)
Q Consensus       163 ~~--~~~~~~~~~~~~~~G~l~~--~d~~~g~---~~~~~-----~~l~~pnGIa~~~dg~~Lyv~d~~-----------  219 (310)
                      ..  ......       .-.+.+  ++.....   .+.+.     ...+.-..|+|++||+ ||++--.           
T Consensus       103 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd~~~~~~~~~~~  174 (450)
T d1crua_         103 PKSTDKELPN-------QTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFL  174 (450)
T ss_dssp             TTC--CCSCE-------EEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTS
T ss_pred             CCCccccccc-------ceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecCCCccccccccc
Confidence            00  000000       001222  2222111   11122     1234567999999996 9997431           


Q ss_pred             ---------------------CCeEEEEEecCCCCC--------ceee--ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          220 ---------------------GNRTLKYWLRGPRAN--------SFDI--INFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       220 ---------------------~~~I~~~~~~~~~~g--------~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                                           .+.|.|++.++....        ..++  .++- -|-||++++  +|+||+++++..
T Consensus       175 ~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~R-Np~g~~~~p--~g~l~~~e~G~~  249 (450)
T d1crua_         175 PNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTP--NGKLLQSEQGPN  249 (450)
T ss_dssp             CCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCS-EEEEEEECT--TSCEEEEEECSS
T ss_pred             ccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccc-cccceeecc--cceeeecccccc
Confidence                                 378999988764210        0123  3333 399999999  999999998754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.34  E-value=5.6e-05  Score=63.56  Aligned_cols=189  Identities=16%  Similarity=0.158  Sum_probs=109.7

Q ss_pred             CCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE
Q 048181           31 PKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI  110 (310)
Q Consensus        31 ~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV  110 (310)
                      |--..-.+++|.|+|+++++...++.|..++...+......                 .......-..+++. ++|++++
T Consensus        10 GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-----------------~~~h~~~v~~v~~~-~~g~~~~   71 (299)
T d1nr0a2          10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-----------------PDVHATMITGIKTT-SKGDLFT   71 (299)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-----------------SCSCSSCEEEEEEC-TTSCEEE
T ss_pred             CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-----------------cCCCCCcEEEEEee-ccceeec
Confidence            34456778999999998888888999999987643321100                 00112234578886 7888988


Q ss_pred             EeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCe
Q 048181          111 ADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQ  190 (310)
Q Consensus       111 ad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~  190 (310)
                      +.....+..++......... ..........+..++++++ |++.++...                  +.+..++.  ++
T Consensus        72 ~~~d~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~-g~~~~~~~~------------------~~i~~~~~--~~  129 (299)
T d1nr0a2          72 VSWDDHLKVVPAGGSGVDSS-KAVANKLSSQPLGLAVSAD-GDIAVAACY------------------KHIAIYSH--GK  129 (299)
T ss_dssp             EETTTEEEEECSSSSSSCTT-SCCEEECSSCEEEEEECTT-SSCEEEEES------------------SEEEEEET--TE
T ss_pred             ccceeeEEEeccCCcccccc-ccccccccccccccccccc-ccccccccc------------------cccccccc--cc
Confidence            87666677777654321111 0000111234567888884 776665432                  34555553  22


Q ss_pred             EEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCCCceeeeCCCCCCcEEEEEe
Q 048181          191 VTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       191 ~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                      ..... .-.....++++|+++.|+ +-+..+.|..+++.+..........-......+++++  +|.+.++..
T Consensus       130 ~~~~~-~~~~~~~~~~s~~~~~l~-~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~  198 (299)
T d1nr0a2         130 LTEVP-ISYNSSCVALSNDKQFVA-VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN--NGAFLVATD  198 (299)
T ss_dssp             EEEEE-CSSCEEEEEECTTSCEEE-EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT--TSSEEEEEE
T ss_pred             ccccc-cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc--ccccccccc
Confidence            22222 123457899999998554 5567788999988753111111122233456778887  777655543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=98.32  E-value=0.00054  Score=60.31  Aligned_cols=209  Identities=9%  Similarity=0.096  Sum_probs=116.6

Q ss_pred             cceEEE-----ccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEe-----cCC
Q 048181           36 GESIAF-----EPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALH-----YAT  105 (310)
Q Consensus        36 Pegia~-----d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d-----~~~  105 (310)
                      ..++|+     +|+..+++....++.|+.++.+|+...+.                     ..++++.+.+-     ..+
T Consensus        26 ADDPAIW~n~~~p~~SlI~gTdK~~Gl~vYdL~G~~l~~~---------------------~~Gr~NNVDvr~~~~l~~~   84 (353)
T d1h6la_          26 ADDPAIWLDPKNPQNSKLITTNKKSGLAVYSLEGKMLHSY---------------------HTGKLNNVDIRYDFPLNGK   84 (353)
T ss_dssp             EEEEEEECCSSCGGGCEEEEEETTSCCEEEETTCCEEEEC---------------------CSSCEEEEEEEEEEEETTE
T ss_pred             cCCceEEcCCCCcCccEEEEEcCcCCEEEEcCCCcEEEec---------------------ccCCcCccccccccccCCc
Confidence            455664     45677888877777899999988765431                     23466655431     011


Q ss_pred             Ce-E-EEEeCC---Cc--EEEEeCCCCeEEEeeccCC--CccccCccceEE--eCCCCeEE--EEcCCCccCccceeEee
Q 048181          106 RQ-L-YIADAY---SG--LLVVGPNGRLATQLATGAE--GQAFHFLDGLDV--DQGTGVVY--FTDASGVYDFRTIVKLN  172 (310)
Q Consensus       106 g~-L-yVad~~---~g--i~~id~~~~~~~~~~~~~~--g~~~~~pndvav--d~~~G~ly--vtd~~~~~~~~~~~~~~  172 (310)
                      +. | ++++..   ..  ++.++...+....+.....  ......+-|+++  ++++|.+|  +++..            
T Consensus        85 ~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~------------  152 (353)
T d1h6la_          85 KVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKE------------  152 (353)
T ss_dssp             EEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSS------------
T ss_pred             ceEEEEEeCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCC------------
Confidence            21 2 334443   22  6777877666554422110  012334678888  66567655  34432            


Q ss_pred             eecCCCceE--EEEcC-CCCeEEE----eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee------e
Q 048181          173 ITNDSTGRL--LSYNP-RSSQVTV----LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI------I  239 (310)
Q Consensus       173 ~~~~~~G~l--~~~d~-~~g~~~~----~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~------~  239 (310)
                            |++  |++.. ..+.++.    ....-..+.|+++|.+.++||++|- ...||+|+.+........+      .
T Consensus       153 ------G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~  225 (353)
T d1h6la_         153 ------GEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGR  225 (353)
T ss_dssp             ------SEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSS
T ss_pred             ------ceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCc
Confidence                  333  22221 1232221    1123346789999999999999987 4579999876332111111      2


Q ss_pred             cCCCCCceeee----CCCCCCcEEEEEecCCCCCCCCceeeEEECCC--CcEEEEEecCCC
Q 048181          240 NFQAKPHNIKR----NPGLLQTFWEAAIITRQPAGTPVPIGQRISAF--GAVLDTISFEAQ  294 (310)
Q Consensus       240 ~l~g~Pdgl~~----d~~~dG~l~va~~~~~~~~~~~~~~v~~~~~~--G~~~~~~~~p~~  294 (310)
                      ++.+-|.||++    +.  +|.|.++..+..        ....|+..  .+.+.++.+-.+
T Consensus       226 ~l~~D~EGlaiy~~~~~--~GylivSsQG~n--------~f~vydr~~~~~~~g~F~i~~~  276 (353)
T d1h6la_         226 HLTPDIEGLTIYYAADG--KGYLLASSQGNS--------SYAIYERQGQNKYVADFQITDG  276 (353)
T ss_dssp             SCCSCEEEEEEEECGGG--CEEEEEEEGGGT--------EEEEEESSTTCCEEEEEEECCC
T ss_pred             cccCCccccEEEEcCCC--CeEEEEEcCCCC--------eEEEEecCCCccccceEEEecC
Confidence            35556889986    33  455566666542        45556543  366767666443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.23  E-value=4.5e-05  Score=67.26  Aligned_cols=144  Identities=13%  Similarity=0.147  Sum_probs=86.6

Q ss_pred             CCcceEEE--ccCCC--EEEEEe--CCC--eEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           34 FGGESIAF--EPVGG--AFYTGV--ADG--RILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        34 ~~Pegia~--d~~G~--l~~~d~--~~g--~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      ..|-||.+  +.+|.  |+++..  ...  .|++++.++...++..         |-      ..+....|+.+++. .+
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~---------~v------~~~~~~~pNDv~~~-~~  160 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK---------TI------RHKLLPSVNDIVAV-GP  160 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE---------EE------CCTTCSSEEEEEEE-ET
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEe---------ec------CCccccCccceEEe-cC
Confidence            46899876  44565  333332  122  3556666654333321         21      12455679999996 78


Q ss_pred             CeEEEEeCC-----------------C-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccc
Q 048181          106 RQLYIADAY-----------------S-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRT  167 (310)
Q Consensus       106 g~LyVad~~-----------------~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~  167 (310)
                      |.+|+++..                 . .++.++.+  +.+.+++     .+.+|||+++++++..|||+++..      
T Consensus       161 g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~--~~~~~~~-----~l~~pNGI~~s~d~~~lyVa~t~~------  227 (340)
T d1v04a_         161 EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE-----GFDFANGINISPDGKYVYIAELLA------  227 (340)
T ss_dssp             TEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS--CEEEEEE-----EESSEEEEEECTTSSEEEEEEGGG------
T ss_pred             CCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC--ceEEEcC-----CCCccceeEECCCCCEEEEEeCCC------
Confidence            999999631                 1 15555543  4444432     467899999999656899999754      


Q ss_pred             eeEeeeecCCCceEEEEcCCC-CeEE--EeecCCCCCceeEEccCCCEEEEEe
Q 048181          168 IVKLNITNDSTGRLLSYNPRS-SQVT--VLLRNLTGPAGVAISVDSSFLLVSE  217 (310)
Q Consensus       168 ~~~~~~~~~~~G~l~~~d~~~-g~~~--~~~~~l~~pnGIa~~~dg~~Lyv~d  217 (310)
                                 ++|++|+.+. ++.+  ....--..|.+|.+++++..+|++-
T Consensus       228 -----------~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         228 -----------HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             -----------TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             -----------CeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence                       4566655431 2222  2223234699999997554588874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=0.00077  Score=57.73  Aligned_cols=181  Identities=8%  Similarity=-0.037  Sum_probs=108.3

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCC-eEEEEeC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATR-QLYIADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g-~LyVad~  113 (310)
                      ....+++.+++.++++...++.|..++...+......                  .........+++. .++ .++++..
T Consensus       143 ~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~------------------~~~~~~v~~l~~s-~~~~~~~~~~~  203 (337)
T d1gxra_         143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF------------------QGHTDGASCIDIS-NDGTKLWTGGL  203 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEEC-TTSSEEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccc------------------ccccccccccccc-ccccccccccc
Confidence            3456778888887777777888888887644322110                  0112334578886 455 4544554


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ...+..+|..+++...... ..    ...+.++++++ ++..++-..                 +|.+..+|..+++...
T Consensus       204 d~~v~i~d~~~~~~~~~~~-~~----~~i~~l~~~~~-~~~l~~~~~-----------------d~~i~i~d~~~~~~~~  260 (337)
T d1gxra_         204 DNTVRSWDLREGRQLQQHD-FT----SQIFSLGYCPT-GEWLAVGME-----------------SSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CS----SCEEEEEECTT-SSEEEEEET-----------------TSCEEEEETTSSCEEE
T ss_pred             cccccccccccceeecccc-cc----cceEEEEEccc-ccccceecc-----------------cccccccccccccccc
Confidence            4457788887765422211 11    23567889984 666554322                 3567777776665444


Q ss_pred             eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEEEEe
Q 048181          194 LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       194 ~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                      ....-...+.++|+|+|++| ++-...+.|..++...   +.... ....+....+++++  +|++.++..
T Consensus       261 ~~~~~~~i~~v~~s~~g~~l-~s~s~Dg~i~iwd~~~---~~~~~~~~~~~~v~~~~~s~--d~~~l~t~s  325 (337)
T d1gxra_         261 LHLHESCVLSLKFAYCGKWF-VSTGKDNLLNAWRTPY---GASIFQSKESSSVLSCDISV--DDKYIVTGS  325 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTT---CCEEEEEECSSCEEEEEECT--TSCEEEEEE
T ss_pred             ccccccccceEEECCCCCEE-EEEeCCCeEEEEECCC---CCEEEEccCCCCEEEEEEeC--CCCEEEEEe
Confidence            33333456899999999854 5556678888887653   22211 22223456788888  887665543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.17  E-value=0.00011  Score=62.77  Aligned_cols=171  Identities=13%  Similarity=0.051  Sum_probs=100.6

Q ss_pred             EEcc-CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEEEeCCC--
Q 048181           40 AFEP-VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYIADAYS--  115 (310)
Q Consensus        40 a~d~-~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyVad~~~--  115 (310)
                      -|.| ||+++ +-...++|+.++.+++...-.                    ....+...+++. ++|+ |+++....  
T Consensus         9 ~fSP~dG~~~-a~~~~g~v~v~d~~~~~~~~~--------------------~~~~~v~~~~~s-pDg~~l~~~~~~~g~   66 (360)
T d1k32a3           9 DFSPLDGDLI-AFVSRGQAFIQDVSGTYVLKV--------------------PEPLRIRYVRRG-GDTKVAFIHGTREGD   66 (360)
T ss_dssp             EEEECGGGCE-EEEETTEEEEECTTSSBEEEC--------------------SCCSCEEEEEEC-SSSEEEEEEEETTEE
T ss_pred             cccCCCCCEE-EEEECCeEEEEECCCCcEEEc--------------------cCCCCEEEEEEC-CCCCEEEEEEcCCCC
Confidence            4667 78744 334578898888776543210                    123356789997 5665 44443333  


Q ss_pred             cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181          116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL  195 (310)
Q Consensus       116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~  195 (310)
                      .|+.+|.++++...+..     .....+.++++|+ |+..++-..                 ++.++.++..+++.....
T Consensus        67 ~v~v~d~~~~~~~~~~~-----~~~~v~~~~~spd-g~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~  123 (360)
T d1k32a3          67 FLGIYDYRTGKAEKFEE-----NLGNVFAMGVDRN-GKFAVVAND-----------------RFEIMTVDLETGKPTVIE  123 (360)
T ss_dssp             EEEEEETTTCCEEECCC-----CCCSEEEEEECTT-SSEEEEEET-----------------TSEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCcEEEeeC-----CCceEEeeeeccc-ccccceecc-----------------ccccccccccccceeeee
Confidence            37788988887665432     1234578999995 765554322                 356788887777665444


Q ss_pred             c-CCCCCceeEEccCCCEEEEEecC---------CCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcEEE
Q 048181          196 R-NLTGPAGVAISVDSSFLLVSEFT---------GNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTFWE  260 (310)
Q Consensus       196 ~-~l~~pnGIa~~~dg~~Lyv~d~~---------~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l~v  260 (310)
                      . .......++++|||++|.++...         .+.++.++..+   +.... .........+++.+  ||+..+
T Consensus       124 ~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~---~~~~~~~~~~~~~~~~~~sp--dg~~l~  194 (360)
T d1k32a3         124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG---RKIFAATTENSHDYAPAFDA--DSKNLY  194 (360)
T ss_dssp             ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT---TEEEECSCSSSBEEEEEECT--TSCEEE
T ss_pred             ecccccccchhhccceeeeeeeccccccceeeccccceeeecccc---CceeeecccccccccccccC--CCCEEE
Confidence            3 33456789999999988765432         22455666543   22211 11222234566777  776433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.15  E-value=0.00065  Score=59.18  Aligned_cols=157  Identities=5%  Similarity=-0.046  Sum_probs=89.2

Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-EeCC
Q 048181           37 ESIAFEPVGGAFYTGVADGRILKYQAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADAY  114 (310)
Q Consensus        37 egia~d~~G~l~~~d~~~g~I~r~~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~~  114 (310)
                      .+++|+++|+++.+...++.|+-++..++ .+.+...                 ..-...-..|+++ +++++++ +...
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-----------------~gH~~~V~~l~fs-p~~~~l~s~s~D   72 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-----------------KEHNGQVTGVDWA-PDSNRIVTCGTD   72 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-----------------ECCSSCEEEEEEE-TTTTEEEEEETT
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-----------------cCCCCCEEEEEEC-CCCCEEEEEECC
Confidence            58999999998888888898888876543 3322110                 0112234688997 5665544 4444


Q ss_pred             CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE-
Q 048181          115 SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV-  193 (310)
Q Consensus       115 ~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~-  193 (310)
                      ..|...|.+++........ .+ .-.....++++|+ ++.+++-...               ..-+++.++........ 
T Consensus        73 ~~i~vWd~~~~~~~~~~~~-~~-~~~~v~~i~~~p~-~~~l~~~s~d---------------~~i~i~~~~~~~~~~~~~  134 (371)
T d1k8kc_          73 RNAYVWTLKGRTWKPTLVI-LR-INRAARCVRWAPN-EKKFAVGSGS---------------RVISICYFEQENDWWVCK  134 (371)
T ss_dssp             SCEEEEEEETTEEEEEEEC-CC-CSSCEEEEEECTT-SSEEEEEETT---------------SSEEEEEEETTTTEEEEE
T ss_pred             CeEEEEeeccccccccccc-cc-ccccccccccccc-cccceeeccc---------------Ccceeeeeeccccccccc
Confidence            4466667666544332221 11 1234578899995 7655553321               11245555544332111 


Q ss_pred             -eecCC-CCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          194 -LLRNL-TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       194 -~~~~l-~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                       ..... .....++|+||+++| ++-+..+.|..++...
T Consensus       135 ~~~~~~~~~v~~v~~~p~~~~l-~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         135 HIKKPIRSTVLSLDWHPNSVLL-AAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             EECTTCCSCEEEEEECTTSSEE-EEEETTSCEEEEECCC
T ss_pred             ccccccccccccccccccccce-eccccCcEEEEEeecc
Confidence             11111 234679999999854 5666677888777653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.10  E-value=0.00012  Score=62.47  Aligned_cols=132  Identities=10%  Similarity=0.015  Sum_probs=85.5

Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEE-EEcCCCccCccceeEeeeecCCCc
Q 048181          101 LHYATRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVY-FTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       101 ~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~ly-vtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      +.|.+|+++++.....|+.++.+++....+..      -....+++++|+ |+.. ++....                ..
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~------~~~v~~~~~spD-g~~l~~~~~~~----------------g~   66 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPE------PLRIRYVRRGGD-TKVAFIHGTRE----------------GD   66 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEECSC------CSCEEEEEECSS-SEEEEEEEETT----------------EE
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEccC------CCCEEEEEECCC-CCEEEEEEcCC----------------CC
Confidence            44346777665544458888888877665421      124678999995 7544 432211                13


Q ss_pred             eEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCceeeeCCCCCCcE
Q 048181          180 RLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPHNIKRNPGLLQTF  258 (310)
Q Consensus       180 ~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pdgl~~d~~~dG~l  258 (310)
                      .|+.+|..+++++.+.......+.++|+|||++|+ +-...+.++.++.++..  .... .........+++.+  ||.+
T Consensus        67 ~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sp--dg~~  141 (360)
T d1k32a3          67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV-VANDRFEIMTVDLETGK--PTVIERSREAMITDFTISD--NSRF  141 (360)
T ss_dssp             EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEE-EEETTSEEEEEETTTCC--EEEEEECSSSCCCCEEECT--TSCE
T ss_pred             EEEEEECCCCcEEEeeCCCceEEeeeecccccccc-eeccccccccccccccc--eeeeeecccccccchhhcc--ceee
Confidence            57888888888877776666778999999999555 45667788888876431  1122 22233456788888  8875


Q ss_pred             EE
Q 048181          259 WE  260 (310)
Q Consensus       259 ~v  260 (310)
                      .+
T Consensus       142 la  143 (360)
T d1k32a3         142 IA  143 (360)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.02  E-value=6.4e-05  Score=68.43  Aligned_cols=113  Identities=7%  Similarity=0.007  Sum_probs=69.2

Q ss_pred             CCeEEEEeCCC-cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCc--cceeEeeeecCCCceE
Q 048181          105 TRQLYIADAYS-GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDF--RTIVKLNITNDSTGRL  181 (310)
Q Consensus       105 ~g~LyVad~~~-gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~--~~~~~~~~~~~~~G~l  181 (310)
                      ...|||+|..+ +|.+||+++.+...+.....   ...|+++++++++..+||+........  .+.. .+........+
T Consensus        83 Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~-~~~~~~~~~~~  158 (441)
T d1qnia2          83 GKYLFINDKANTRVARIRLDIMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT-DFSLDNSYTMF  158 (441)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEECSCEESSCSSS-CCCGGGEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEeeEEecCC---CCCccceEEeccCCEEEEEeccCCcccccCccc-ccccccccceE
Confidence            44699998764 59999999987665543222   246889999986456688764321000  0000 00001111345


Q ss_pred             EEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC
Q 048181          182 LSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN  221 (310)
Q Consensus       182 ~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~  221 (310)
                      ..+|+.+.++.....--..|.+++++|||+++|++.....
T Consensus       159 ~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse  198 (441)
T d1qnia2         159 TAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSE  198 (441)
T ss_dssp             EEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTT
T ss_pred             EeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCC
Confidence            5678877665433322347999999999999999986654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.02  E-value=0.0027  Score=53.02  Aligned_cols=231  Identities=6%  Similarity=-0.008  Sum_probs=117.5

Q ss_pred             CCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           29 FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      |.|--..-.+++|.+++.++++...+|.|.-++...+.......                  ........+++. +++.+
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~------------------~~~~~v~~v~~~-~~~~~  111 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP------------------LRSSWVMTCAYA-PSGNY  111 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE------------------CSCSCEEEEEEC-TTSSE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe------------------cccccEEeeEee-cccee
Confidence            45555567899999999988888899999999987543221110                  112234678886 55655


Q ss_pred             EE-EeCCCcEEEEeCCCCeEE-EeeccCCCccccCccceEEeC--------CCCeEEEEcCCCccCc-------cce---
Q 048181          109 YI-ADAYSGLLVVGPNGRLAT-QLATGAEGQAFHFLDGLDVDQ--------GTGVVYFTDASGVYDF-------RTI---  168 (310)
Q Consensus       109 yV-ad~~~gi~~id~~~~~~~-~~~~~~~g~~~~~pndvavd~--------~~G~lyvtd~~~~~~~-------~~~---  168 (310)
                      ++ +.....+...+....... .......+.. ..........        .+......+.......       ...   
T Consensus       112 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (340)
T d1tbga_         112 VACGGLDNICSIYNLKTREGNVRVSRELAGHT-GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             EEEEETTCCEEEEESSSSCSCCCEEEEECCCS-SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             eeeecccceeecccccccccccccceeccccc-ccccccccccccccccccccccccccccccccccccccccceeEeee
Confidence            44 433333544443321100 0000000000 0000011111        0122211111110000       000   


Q ss_pred             -----eEeeeecCCCceEEEEcCCCCeEEEeecC-CCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeee---
Q 048181          169 -----VKLNITNDSTGRLLSYNPRSSQVTVLLRN-LTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDII---  239 (310)
Q Consensus       169 -----~~~~~~~~~~G~l~~~d~~~g~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~---  239 (310)
                           .........++.+..+|..+++....... -...+.|+++|+++.| ++-+..+.|..+++...  ......   
T Consensus       191 ~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l-~s~s~d~~i~~~~~~~~--~~~~~~~~~  267 (340)
T d1tbga_         191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRAD--QELMTYSHD  267 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTT--EEEEEECCT
T ss_pred             ccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeeccc--ccccccccc
Confidence                 00112344567888888877765443332 2345789999999854 55556788888887532  111111   


Q ss_pred             cCCCCCceeeeCCCCCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecC
Q 048181          240 NFQAKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFE  292 (310)
Q Consensus       240 ~l~g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p  292 (310)
                      ........+++++  +|++.++....+        .+..+| .+|+.+..+...
T Consensus       268 ~~~~~i~~~~~s~--~~~~l~~g~~dg--------~i~iwd~~~~~~~~~~~~H  311 (340)
T d1tbga_         268 NIICGITSVSFSK--SGRLLLAGYDDF--------NCNVWDALKADRAGVLAGH  311 (340)
T ss_dssp             TCCSCEEEEEECS--SSCEEEEEETTS--------CEEEEETTTCCEEEEECCC
T ss_pred             cccCceEEEEECC--CCCEEEEEECCC--------EEEEEECCCCcEEEEEcCC
Confidence            1112246688898  888766654432        566677 357777666543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.01  E-value=0.00049  Score=61.71  Aligned_cols=210  Identities=12%  Similarity=0.050  Sum_probs=121.3

Q ss_pred             CCCCCcceEEEcc---CCC-EEEEEeCCCeEEEEECCCceE-EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC
Q 048181           31 PKAFGGESIAFEP---VGG-AFYTGVADGRILKYQAPDGFT-DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT  105 (310)
Q Consensus        31 ~~~~~Pegia~d~---~G~-l~~~d~~~g~I~r~~~~g~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~  105 (310)
                      |.+..| -+.+..   ||+ +|+.|..+.||-||+.+.-.+ .+.                  ..+....++|+......
T Consensus        83 GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi------------------~iPn~~~~HG~r~~~~p  143 (459)
T d1fwxa2          83 GDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL------------------EIPNAKGIHGLRPQKWP  143 (459)
T ss_dssp             CCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE------------------ECSSCCSEEEEEECCSS
T ss_pred             CCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEE------------------ecCCCCCCceeecccCC
Confidence            455666 444443   676 445567899999999985332 121                  12456678999875334


Q ss_pred             CeEEEEeCCC-------------------c-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCc--c
Q 048181          106 RQLYIADAYS-------------------G-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGV--Y  163 (310)
Q Consensus       106 g~LyVad~~~-------------------g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~--~  163 (310)
                      ...||+....                   + +..||.++.++..-. ..++    .|.+++++++++.+|+|.....  .
T Consensus       144 ~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV-~V~g----~ld~~~~s~dGK~af~TsyNSE~g~  218 (459)
T d1fwxa2         144 RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV-LVSG----NLDNCDADYEGKWAFSTSYNSEKGM  218 (459)
T ss_dssp             BCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEE-EESS----CCCCEEECSSSSEEEEEESCTTCCS
T ss_pred             CeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEe-eeCC----ChhccccCCCCCEEEEEeccccCCc
Confidence            5567753111                   2 457888876653211 1222    4679999997556666653221  0


Q ss_pred             C-------ccceeEee-----eecCCC------ceEEEEcCCC---CeEEEeecCCCCCceeEEccCCCEEEEEecCCCe
Q 048181          164 D-------FRTIVKLN-----ITNDST------GRLLSYNPRS---SQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNR  222 (310)
Q Consensus       164 ~-------~~~~~~~~-----~~~~~~------G~l~~~d~~~---g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~  222 (310)
                      .       ..++....     .+...+      +.+-.+|...   ..+...+.--..|.|+.++|||+++|++......
T Consensus       219 ~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~t  298 (459)
T d1fwxa2         219 TLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPT  298 (459)
T ss_dssp             SHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSB
T ss_pred             chhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCc
Confidence            0       01111100     000000      2244555432   1222223334579999999999999999999999


Q ss_pred             EEEEEec-------CCCCCceee---ecCCCCCceeeeCCCCCCcEEEEEecCC
Q 048181          223 TLKYWLR-------GPRANSFDI---INFQAKPHNIKRNPGLLQTFWEAAIITR  266 (310)
Q Consensus       223 I~~~~~~-------~~~~g~~~~---~~l~g~Pdgl~~d~~~dG~l~va~~~~~  266 (310)
                      +.+|++.       +..--...+   ..+--.|=.-++|.  +|+.|.+++...
T Consensus       299 VSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~--~g~aytslfids  350 (459)
T d1fwxa2         299 VTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG--RGNAYTSLFLDS  350 (459)
T ss_dssp             EEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT--TSEEEEEETTTT
T ss_pred             EEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC--CceEEEEeeccc
Confidence            9999974       110000001   12222488889999  999999998763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.96  E-value=0.0019  Score=56.00  Aligned_cols=193  Identities=7%  Similarity=-0.084  Sum_probs=101.5

Q ss_pred             CCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCce-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe
Q 048181           29 FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGF-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ  107 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~  107 (310)
                      +.+.-..-.+++|.|+++++++...++.|.-++...+. .....                 ..........++++ ++++
T Consensus        47 l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~-----------------~~~~~~~v~~i~~~-p~~~  108 (371)
T d1k8kc_          47 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV-----------------ILRINRAARCVRWA-PNEK  108 (371)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE-----------------CCCCSSCEEEEEEC-TTSS
T ss_pred             ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc-----------------cccccccccccccc-cccc
Confidence            34333456899999999988888788888888765432 21110                 01122345688897 5565


Q ss_pred             E-EEEeCCCc--EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEE
Q 048181          108 L-YIADAYSG--LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSY  184 (310)
Q Consensus       108 L-yVad~~~g--i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~  184 (310)
                      . +++.....  ++.++...... ........ .-.....++++|+ |..+++-..                 +|.+..+
T Consensus       109 ~l~~~s~d~~i~i~~~~~~~~~~-~~~~~~~~-~~~~v~~v~~~p~-~~~l~s~s~-----------------D~~v~v~  168 (371)
T d1k8kc_         109 KFAVGSGSRVISICYFEQENDWW-VCKHIKKP-IRSTVLSLDWHPN-SVLLAAGSC-----------------DFKCRIF  168 (371)
T ss_dssp             EEEEEETTSSEEEEEEETTTTEE-EEEEECTT-CCSCEEEEEECTT-SSEEEEEET-----------------TSCEEEE
T ss_pred             cceeecccCcceeeeeecccccc-cccccccc-ccccccccccccc-ccceecccc-----------------CcEEEEE
Confidence            4 44444332  44455443322 11111111 1123456888884 777665332                 1233333


Q ss_pred             cCCC------------------CeEE-EeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceeeecCCCC-
Q 048181          185 NPRS------------------SQVT-VLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDIINFQAK-  244 (310)
Q Consensus       185 d~~~------------------g~~~-~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~~~l~g~-  244 (310)
                      +...                  ++.. .........++++|+|+|+.|+. -+..+.|..+++....  .......... 
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s-~~~d~~i~iwd~~~~~--~~~~~~~~~~~  245 (371)
T d1k8kc_         169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW-VSHDSTVCLADADKKM--AVATLASETLP  245 (371)
T ss_dssp             ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE-EETTTEEEEEEGGGTT--EEEEEECSSCC
T ss_pred             eeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc-cccCCcceEEeeeccc--ceeeeeccccc
Confidence            2211                  1111 11112234578999999986554 4567888888876421  1111111122 


Q ss_pred             CceeeeCCCCCCcEEEEEec
Q 048181          245 PHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       245 Pdgl~~d~~~dG~l~va~~~  264 (310)
                      -..+++.+  ||.+.++...
T Consensus       246 v~s~~fs~--d~~~la~g~d  263 (371)
T d1k8kc_         246 LLAVTFIT--ESSLVAAGHD  263 (371)
T ss_dssp             EEEEEEEE--TTEEEEEETT
T ss_pred             ceeeeecC--CCCEEEEEcC
Confidence            35688888  8877766443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.95  E-value=0.0013  Score=56.14  Aligned_cols=183  Identities=9%  Similarity=0.019  Sum_probs=103.3

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCc-e-EEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDG-F-TDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~-~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-  111 (310)
                      .|..++++|+|+.++... ++.|+.++.+.. . ..+.                    ........+++. ++|+++++ 
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~--------------------~H~~~v~~~~~s-p~g~~latg   76 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT--------------------EHSHQTTVAKTS-PSGYYCASG   76 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC--------------------CCSSCEEEEEEC-TTSSEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEc--------------------CCCCCEEEEEEe-CCCCeEecc
Confidence            455689999998666554 566877776532 2 2221                    112345678896 67776654 


Q ss_pred             eCCCcEEEEeCCCCeE--EEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCC
Q 048181          112 DAYSGLLVVGPNGRLA--TQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSS  189 (310)
Q Consensus       112 d~~~gi~~id~~~~~~--~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g  189 (310)
                      .....|..++..++..  .......    -...+.++++++ |..+++-....             ....+++.++  ++
T Consensus        77 ~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~d-~~~l~~~~~~~-------------~~~~~v~~~~--~~  136 (311)
T d1nr0a1          77 DVHGNVRIWDTTQTTHILKTTIPVF----SGPVKDISWDSE-SKRIAAVGEGR-------------ERFGHVFLFD--TG  136 (311)
T ss_dssp             ETTSEEEEEESSSTTCCEEEEEECS----SSCEEEEEECTT-SCEEEEEECCS-------------SCSEEEEETT--TC
T ss_pred             ccCceEeeeeeeccccccccccccc----cCcccccccccc-ccccccccccc-------------cccccccccc--cc
Confidence            4444477777665432  1111111    123578999995 77666543210             1112344333  33


Q ss_pred             eEEE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ecCCCCCceeeeCCCCCCcEEEEEec
Q 048181          190 QVTV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--INFQAKPHNIKRNPGLLQTFWEAAII  264 (310)
Q Consensus       190 ~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~l~g~Pdgl~~d~~~dG~l~va~~~  264 (310)
                      +... +.......+.++|+|++++++++-+..+.|..+++..   +....  ..-......+++++  +|+++++...
T Consensus       137 ~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---~~~~~~~~~~~~~i~~v~~~p--~~~~l~~~~~  209 (311)
T d1nr0a1         137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNP--DGSLFASTGG  209 (311)
T ss_dssp             CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECT--TSSEEEEEET
T ss_pred             cccccccccccccccccccccceeeecccccccccccccccc---cccccccccccccccccccCc--cccccccccc
Confidence            3221 2222234578999999998888877888898888753   22211  12122346788888  8887665443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=0.0058  Score=52.35  Aligned_cols=208  Identities=12%  Similarity=0.051  Sum_probs=115.1

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYS  115 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~  115 (310)
                      -.+++|.++|+++++...++.|..++...+......                  .........+++......++.+....
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~------------------~~h~~~v~~~~~~~~~~~~~~~~~~~  185 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL------------------QGHEQDIYSLDYFPSGDKLVSGSGDR  185 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCcceeccccccccccccccccccccc------------------ccccccccccccccccccccccccce
Confidence            457999999998889989999998887754322111                  01122345677763333455555554


Q ss_pred             cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181          116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL  195 (310)
Q Consensus       116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~  195 (310)
                      .+...|..+......... .    .....+++.+.+++++++-.                 .+|.+..+|..++......
T Consensus       186 ~i~~~d~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~i~~~~~~~~~~~~  243 (388)
T d1erja_         186 TVRIWDLRTGQCSLTLSI-E----DGVTTVAVSPGDGKYIAAGS-----------------LDRAVRVWDSETGFLVERL  243 (388)
T ss_dssp             EEEEEETTTTEEEEEEEC-S----SCEEEEEECSTTCCEEEEEE-----------------TTSCEEEEETTTCCEEEEE
T ss_pred             eeeeeecccccccccccc-c----cccccccccCCCCCeEEEEc-----------------CCCeEEEeecccCccceee
Confidence            577778776543322111 1    11233444443465555432                 1355666665544332211


Q ss_pred             c--------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCc---------eee--ecCCCCCceeeeCCCCCC
Q 048181          196 R--------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANS---------FDI--INFQAKPHNIKRNPGLLQ  256 (310)
Q Consensus       196 ~--------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~---------~~~--~~l~g~Pdgl~~d~~~dG  256 (310)
                      .        .-..-+.++++|++++| ++-+..+.|..+++.......         ...  ..-......+++++  +|
T Consensus       244 ~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~  320 (388)
T d1erja_         244 DSENESGTGHKDSVYSVVFTRDGQSV-VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--ND  320 (388)
T ss_dssp             C------CCCSSCEEEEEECTTSSEE-EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG--GG
T ss_pred             ccccccccCCCCCEEEEEECCCCCEE-EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC--CC
Confidence            1        11234689999999855 455567788888875321100         000  11113346688888  88


Q ss_pred             cEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCCC
Q 048181          257 TFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEAQ  294 (310)
Q Consensus       257 ~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~  294 (310)
                      .+.++....        +.+..+| .+|+.+..+....+
T Consensus       321 ~~l~sg~~d--------g~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         321 EYILSGSKD--------RGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             CEEEEEETT--------SEEEEEETTTCCEEEEEECCSS
T ss_pred             CEEEEEeCC--------CEEEEEECCCCcEEEEEeCCCC
Confidence            766554443        2677788 56888888776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.77  E-value=0.00087  Score=57.18  Aligned_cols=100  Identities=6%  Similarity=-0.022  Sum_probs=63.3

Q ss_pred             ccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCE-EEEEecCC
Q 048181          142 LDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSF-LLVSEFTG  220 (310)
Q Consensus       142 pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~-Lyv~d~~~  220 (310)
                      ...++++++...+|++.......        ........|..+|..+++....+..-..|.+++|+|||+. ||++....
T Consensus       251 ~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d  322 (355)
T d2bbkh_         251 WQQVAYHRALDRIYLLVDQRDEW--------RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD  322 (355)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTT--------CTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eEEEEEeCCCCeEEEEeccCCce--------eecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC
Confidence            34688888655666654322100        0112235688899887765443333346899999999984 67788888


Q ss_pred             CeEEEEEecCCCCCce-e-eecCCCCCceeeeCC
Q 048181          221 NRTLKYWLRGPRANSF-D-IINFQAKPHNIKRNP  252 (310)
Q Consensus       221 ~~I~~~~~~~~~~g~~-~-~~~l~g~Pdgl~~d~  252 (310)
                      +.|+.|+...   |+. . +.+....|.-+.+..
T Consensus       323 ~~i~v~D~~t---g~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         323 KTLYIHDAES---GEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             TEEEEEETTT---CCEEEEECCCCSSCCEEECCC
T ss_pred             CEEEEEECCC---CCEEEEEeCcCCCccEEEeCC
Confidence            9999998753   332 1 133444688887766

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=0.0017  Score=53.88  Aligned_cols=150  Identities=14%  Similarity=0.123  Sum_probs=86.4

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-EeC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~  113 (310)
                      .+.++++.++|.++++.. .+.+..++... .....                     .......+++. +++++++ +..
T Consensus       101 ~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~-~~~~~---------------------~~~~~~~~~~s-~~~~~l~~g~~  156 (299)
T d1nr0a2         101 QPLGLAVSADGDIAVAAC-YKHIAIYSHGK-LTEVP---------------------ISYNSSCVALS-NDKQFVAVGGQ  156 (299)
T ss_dssp             CEEEEEECTTSSCEEEEE-SSEEEEEETTE-EEEEE---------------------CSSCEEEEEEC-TTSCEEEEEET
T ss_pred             cccccccccccccccccc-ccccccccccc-ccccc---------------------ccccccccccc-ccccccccccc
Confidence            466788888888655554 45666666432 22111                     12234567886 5665554 444


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ...|..+|.++++...+.....   -...+.++++++ +..+++-..                 +|.+..+|..++....
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~---~~~i~~~~~~~~-~~~l~~~~~-----------------d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVH---PAEITSVAFSNN-GAFLVATDQ-----------------SRKVIPYSVANNFELA  215 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEEC---SSCEEEEEECTT-SSEEEEEET-----------------TSCEEEEEGGGTTEES
T ss_pred             cccccccccccccccccccccc---cccccccccccc-ccccccccc-----------------cccccccccccccccc
Confidence            4447777877665543322111   124578999995 766554322                 3667777765443222


Q ss_pred             eecCC----CCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          194 LLRNL----TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       194 ~~~~l----~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      ....+    ...+.++|+|++++| ++-...+.|..+++..
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~~~~l-~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTC
T ss_pred             ccccccccccccccccccccccce-EEEcCCCEEEEEECCC
Confidence            12221    234789999999854 4555677888888764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.48  E-value=0.011  Score=49.05  Aligned_cols=150  Identities=7%  Similarity=0.053  Sum_probs=89.0

Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-eCCC
Q 048181           37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-DAYS  115 (310)
Q Consensus        37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-d~~~  115 (310)
                      ....+.+.+.++++...++.|..++...+......                  .........++++ ++++++++ ....
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~------------------~~h~~~i~~v~~~-p~~~~l~s~s~d~  248 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF------------------TGHESDINAICFF-PNGNAFATGSDDA  248 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE------------------CCCSSCEEEEEEC-TTSSEEEEEETTS
T ss_pred             eeeccccccceeEEeecCceEEEEECCCCcEEEEE------------------eCCCCCeEEEEEC-CCCCEEEEEeCCC
Confidence            44556667777778888888888886644322111                  1112345678997 56665554 4444


Q ss_pred             cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEee
Q 048181          116 GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLL  195 (310)
Q Consensus       116 gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~  195 (310)
                      .|..++.............  ......+.+++++ +|++.++-.                 .+|.|..+|..+++.....
T Consensus       249 ~i~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~-~~~~l~~g~-----------------~dg~i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         249 TCRLFDLRADQELMTYSHD--NIICGITSVSFSK-SGRLLLAGY-----------------DDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             CEEEEETTTTEEEEEECCT--TCCSCEEEEEECS-SSCEEEEEE-----------------TTSCEEEEETTTCCEEEEE
T ss_pred             eEEEEeecccccccccccc--cccCceEEEEECC-CCCEEEEEE-----------------CCCEEEEEECCCCcEEEEE
Confidence            4777887765432222111  1223356789999 477766643                 2477888887766654433


Q ss_pred             cC-CCCCceeEEccCCCEEEEEecCCCeEEEE
Q 048181          196 RN-LTGPAGVAISVDSSFLLVSEFTGNRTLKY  226 (310)
Q Consensus       196 ~~-l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~  226 (310)
                      .+ -..-+.|+|+||+++|+ +-+..+.|+.+
T Consensus       309 ~~H~~~V~~l~~s~d~~~l~-s~s~Dg~v~iW  339 (340)
T d1tbga_         309 AGHDNRVSCLGVTDDGMAVA-TGSWDSFLKIW  339 (340)
T ss_dssp             CCCSSCEEEEEECTTSSCEE-EEETTSCEEEE
T ss_pred             cCCCCCEEEEEEeCCCCEEE-EEccCCEEEEe
Confidence            33 23458899999998654 44455666543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.027  Score=47.44  Aligned_cols=211  Identities=8%  Similarity=0.015  Sum_probs=112.4

Q ss_pred             cceEEEcc--CCCEEEEEeCCCeEEEEECCCc--eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-
Q 048181           36 GESIAFEP--VGGAFYTGVADGRILKYQAPDG--FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-  110 (310)
Q Consensus        36 Pegia~d~--~G~l~~~d~~~g~I~r~~~~g~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-  110 (310)
                      -..++|.|  +|.++.++..+|.|..++...+  ...+....            ........+.-..+++. .+|+.++ 
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~------------~~~~~~~~~~v~~v~~s-~~~~~l~~  132 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV------------KSEFQVLAGPISDISWD-FEGRRLCV  132 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE------------EEEEECCSSCEEEEEEC-TTSSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccc------------ccccccccCcEEEEEEC-CCCCccce
Confidence            55788976  5676667788898877764311  10110000            00000112233578886 5665544 


Q ss_pred             EeCC--CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCC
Q 048181          111 ADAY--SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRS  188 (310)
Q Consensus       111 ad~~--~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~  188 (310)
                      +...  ..+..++.++++....   ..+ +-...+.+++++++..+.++-.                 .+|.+..+|..+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~---~~~-h~~~v~~~~~~~~~~~~~~~~~-----------------~d~~v~~~d~~~  191 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGE---VSG-HSQRINACHLKQSRPMRSMTVG-----------------DDGSVVFYQGPP  191 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEE---CCS-CSSCEEEEEECSSSSCEEEEEE-----------------TTTEEEEEETTT
T ss_pred             eeccccceEEEEeeccccccee---eee-cccccccccccccccceEEEee-----------------cccccccccccc
Confidence            3332  2356666665543211   111 1234577888885333344322                 246677777655


Q ss_pred             CeEEEeecCC----CCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce-ee-ecCCCCCceeeeC---CCCCCcEE
Q 048181          189 SQVTVLLRNL----TGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF-DI-INFQAKPHNIKRN---PGLLQTFW  259 (310)
Q Consensus       189 g~~~~~~~~l----~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~-~~-~~l~g~Pdgl~~d---~~~dG~l~  259 (310)
                      .+........    .....++|+||+..++++-...+.|..|++..   ++. .. ..-.....++.+.   +  +|.+.
T Consensus       192 ~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~---~~~~~~l~~~~~~v~~~~~s~~~~--dg~~l  266 (325)
T d1pgua1         192 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS---GEFLKYIEDDQEPVQGGIFALSWL--DSQKF  266 (325)
T ss_dssp             BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT---CCEEEECCBTTBCCCSCEEEEEES--SSSEE
T ss_pred             cccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc---ccccccccccccccccceeeeecc--CCCEE
Confidence            5443332221    23478999998666788878888999988643   222 11 1111112333333   5  67766


Q ss_pred             EEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCC
Q 048181          260 EAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEA  293 (310)
Q Consensus       260 va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~  293 (310)
                      ++...-        ..+..+| .+|+.+..+....
T Consensus       267 ~s~s~D--------~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         267 ATVGAD--------ATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             EEEETT--------SEEEEEETTTTEEEEEEECCT
T ss_pred             EEEeCC--------CeEEEEECCCCCEEEEEEecC
Confidence            665443        2577778 4588888877654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.048  Score=45.82  Aligned_cols=212  Identities=10%  Similarity=-0.019  Sum_probs=104.5

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEE-ECCCc-eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEec-CCCeEEEE
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKY-QAPDG-FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHY-ATRQLYIA  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~-~~~g~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~-~~g~LyVa  111 (310)
                      .|..++++++|+.+.+...+..+.+. +.... ...+..         .       .......-..+++.+ .+|+++++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~---------~-------~gh~~~~v~~v~fsP~~~g~~las   82 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ---------F-------TGHGSSVVTTVKFSPIKGSQYLCS   82 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEE---------E-------CTTTTSCEEEEEECSSTTCCEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEE---------E-------eCCCCCCEEEEEEeeCCCCCEEEE
Confidence            57789999999866665545444443 32211 110100         0       001122345788863 25566554


Q ss_pred             eCCCc-EEEEeCCCC----eEEEee-ccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181          112 DAYSG-LLVVGPNGR----LATQLA-TGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       112 d~~~g-i~~id~~~~----~~~~~~-~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                      -...+ |...|...+    ...... ..... .....++++++++ |..+++-...               .++.+..++
T Consensus        83 gs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~~-~~~l~~~~~~---------------~~~~~~~~~  145 (325)
T d1pgua1          83 GDESGKVIVWGWTFDKESNSVEVNVKSEFQV-LAGPISDISWDFE-GRRLCVVGEG---------------RDNFGVFIS  145 (325)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEEEEEEEEEEC-CSSCEEEEEECTT-SSEEEEEECC---------------SSCSEEEEE
T ss_pred             EeCCCCEEEeeecCCcceeeeeccccccccc-ccCcEEEEEECCC-CCccceeecc---------------ccceEEEEe
Confidence            32333 444443211    111100 00000 1123468889884 7655442211               123344444


Q ss_pred             CCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee--ec---CCCCCceeeeCCCCC-CcE
Q 048181          186 PRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI--IN---FQAKPHNIKRNPGLL-QTF  258 (310)
Q Consensus       186 ~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~--~~---l~g~Pdgl~~d~~~d-G~l  258 (310)
                      .++++...... .-..-+.++|++++..++++-...+.|..++...   .....  ..   .......+++.+  + |.+
T Consensus       146 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~---~~~~~~~~~~~~~~~~v~~v~~~p--d~~~~  220 (325)
T d1pgua1         146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTHHKQGSFVRDVEFSP--DSGEF  220 (325)
T ss_dssp             TTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEECSSSCTTCCEEEEEECS--TTCCE
T ss_pred             ecccccceeeeecccccccccccccccceEEEeecccccccccccc---cccceecccccCCCCccEEeeecc--cccee
Confidence            44554322222 2234478999999987777777788888887542   12111  11   123346678877  6 455


Q ss_pred             EEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecC
Q 048181          259 WEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFE  292 (310)
Q Consensus       259 ~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p  292 (310)
                      .++....+        .+..+| .+++.+..+..+
T Consensus       221 l~s~~~d~--------~i~iwd~~~~~~~~~l~~~  247 (325)
T d1pgua1         221 VITVGSDR--------KISCFDGKSGEFLKYIEDD  247 (325)
T ss_dssp             EEEEETTC--------CEEEEETTTCCEEEECCBT
T ss_pred             cccccccc--------ceeeeeecccccccccccc
Confidence            55544332        455566 356666666544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.066  Score=45.29  Aligned_cols=198  Identities=10%  Similarity=0.007  Sum_probs=98.9

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceE--EeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEE-
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFT--DFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIA-  111 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVa-  111 (310)
                      .-.+++|+++|+++.++. ++.|..++...+..  .+......  ..................-..+++. ++|+++++ 
T Consensus        64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~s~  139 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA--NKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATG  139 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------CCCCBEEEEEEC-TTSSEEEEE
T ss_pred             cEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccc--cccccccccccccCCCCCEEEEEEC-CCCCcceec
Confidence            356899999999777764 78888888653321  21100000  0000000000000111223578886 56766554 


Q ss_pred             eCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeE
Q 048181          112 DAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQV  191 (310)
Q Consensus       112 d~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~  191 (310)
                      .....|..++...++.......    .......++..++ +...++-.                 .+|.+..+|..+...
T Consensus       140 ~~dg~v~i~~~~~~~~~~~~~~----h~~~v~~~~~~~~-~~~~~~~~-----------------~~~~i~~~d~~~~~~  197 (388)
T d1erja_         140 AEDRLIRIWDIENRKIVMILQG----HEQDIYSLDYFPS-GDKLVSGS-----------------GDRTVRIWDLRTGQC  197 (388)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTT-SSEEEEEE-----------------TTSEEEEEETTTTEE
T ss_pred             cccccccccccccccccccccc----ccccccccccccc-cccccccc-----------------cceeeeeeecccccc
Confidence            3333477778776654332211    1123456777774 54443322                 235677777766555


Q ss_pred             EEeecCCCCCceeEEcc-CCCEEEEEecCCCeEEEEEecCCCCCceee----ecC---CCCCceeeeCCCCCCcEEEEE
Q 048181          192 TVLLRNLTGPAGVAISV-DSSFLLVSEFTGNRTLKYWLRGPRANSFDI----INF---QAKPHNIKRNPGLLQTFWEAA  262 (310)
Q Consensus       192 ~~~~~~l~~pnGIa~~~-dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~----~~l---~g~Pdgl~~d~~~dG~l~va~  262 (310)
                      ............+++.+ +++ ++++-...+.|..++...... ...+    ...   .+....+++.+  +|++.++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~  272 (388)
T d1erja_         198 SLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTR--DGQSVVSG  272 (388)
T ss_dssp             EEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECT--TSSEEEEE
T ss_pred             ccccccccccccccccCCCCC-eEEEEcCCCeEEEeecccCcc-ceeeccccccccCCCCCEEEEEECC--CCCEEEEE
Confidence            44444444455566665 555 555656677888887653210 0111    111   12235677777  77765544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.01  E-value=0.019  Score=49.98  Aligned_cols=138  Identities=11%  Similarity=0.160  Sum_probs=77.2

Q ss_pred             eEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeC----C-CC--eEEEEcCCCccCccceeEeeeecCCCc
Q 048181          107 QLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQ----G-TG--VVYFTDASGVYDFRTIVKLNITNDSTG  179 (310)
Q Consensus       107 ~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~----~-~G--~lyvtd~~~~~~~~~~~~~~~~~~~~G  179 (310)
                      .++-+|-..||+.+|+++.++..+ .      ...+|.+.+-.    . ..  -+++|+....             ...=
T Consensus        42 lI~gTdK~~Gl~vYdL~G~~l~~~-~------~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~-------------~~~l  101 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLEGKMLHSY-H------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEG-------------KNTI  101 (353)
T ss_dssp             EEEEEETTSCCEEEETTCCEEEEC-C------SSCEEEEEEEEEEEETTEEEEEEEEEECCTT-------------TCEE
T ss_pred             EEEEEcCcCCEEEEcCCCcEEEec-c------cCCcCccccccccccCCcceEEEEEeCCcCc-------------ceeE
Confidence            344467667899999987665443 1      22445554431    0 01  1234443210             0011


Q ss_pred             eEEEEcCCCCeEEEee-------cCCCCCceeEE--ccCCCEEEE-EecCCCeEEEEEecCCCCCcee---e--ecCCCC
Q 048181          180 RLLSYNPRSSQVTVLL-------RNLTGPAGVAI--SVDSSFLLV-SEFTGNRTLKYWLRGPRANSFD---I--INFQAK  244 (310)
Q Consensus       180 ~l~~~d~~~g~~~~~~-------~~l~~pnGIa~--~~dg~~Lyv-~d~~~~~I~~~~~~~~~~g~~~---~--~~l~g~  244 (310)
                      .+|.+|+..+.++.+.       ..+..+.|+|+  +++.+.+|+ +....+++..|.+.....+...   +  ..++.-
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q  181 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQ  181 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSC
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCc
Confidence            3666776655554432       23345789999  555443433 3334678877776533333322   2  445667


Q ss_pred             CceeeeCCCCCCcEEEEEecC
Q 048181          245 PHNIKRNPGLLQTFWEAAIIT  265 (310)
Q Consensus       245 Pdgl~~d~~~dG~l~va~~~~  265 (310)
                      +-|+.+|.+ .+.||+++-..
T Consensus       182 ~EGCVvDde-~~~LyisEE~~  201 (353)
T d1h6la_         182 TEGMAADDE-YGSLYIAEEDE  201 (353)
T ss_dssp             EEEEEEETT-TTEEEEEETTT
T ss_pred             cceEEEeCC-CCcEEEecCcc
Confidence            899999985 68999998875

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.98  E-value=0.017  Score=51.44  Aligned_cols=108  Identities=6%  Similarity=-0.006  Sum_probs=63.5

Q ss_pred             eEEEEeCC-CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCc-cC-ccce--eEeeeecCCCceE
Q 048181          107 QLYIADAY-SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGV-YD-FRTI--VKLNITNDSTGRL  181 (310)
Q Consensus       107 ~LyVad~~-~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~-~~-~~~~--~~~~~~~~~~G~l  181 (310)
                      .|||.|.. .+|.+||+++-+...+.....   ...+.++.........||...... .. ..+.  ..+  ...-.+.+
T Consensus       101 ylFVNDkan~RVAvIdl~~fkt~kIi~iPn---~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d--~~~y~~~~  175 (459)
T d1fwxa2         101 FLFMNDKANTRVARVRCDVMKCDAILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED--VANYVNVF  175 (459)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC--GG-EEEEE
T ss_pred             EEEEEcCCCceEEEEECcceeeeEEEecCC---CCCCceeecccCCCeEEEEccCccccccCCCCccccc--hhhcceEE
Confidence            58888865 459999999877665554322   234567777553345566543210 00 0000  000  00112456


Q ss_pred             EEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecC
Q 048181          182 LSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFT  219 (310)
Q Consensus       182 ~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~  219 (310)
                      ..+|.++.++..-..--..|.++++++||+++|++...
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEecc
Confidence            78898877665433323468899999999999998654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.12  Score=41.44  Aligned_cols=211  Identities=9%  Similarity=0.026  Sum_probs=100.6

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEE-EeC
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYI-ADA  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyV-ad~  113 (310)
                      ...++++.+++.+++.....+.+...+.........                  ..........+.+. .++..++ +..
T Consensus        61 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~-~~~~~~~~~~~  121 (317)
T d1vyhc1          61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT------------------MHGHDHNVSSVSIM-PNGDHIVSASR  121 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC------------------CCCCSSCEEEEEEC-SSSSEEEEEET
T ss_pred             cEEEEeeecccccccccccccccccccccccccccc------------------cccccccceeeecc-CCCceEEeecc
Confidence            345677777777666665555555555442221110                  01122234456675 4454444 444


Q ss_pred             CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          114 YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       114 ~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ...+..++.++++.......    .-.....++++++ +.++++-..                 +|.+..++..+++...
T Consensus       122 d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~l~~~~~-----------------d~~v~~~~~~~~~~~~  179 (317)
T d1vyhc1         122 DKTIKMWEVQTGYCVKTFTG----HREWVRMVRPNQD-GTLIASCSN-----------------DQTVRVWVVATKECKA  179 (317)
T ss_dssp             TSEEEEEETTTCCEEEEEEC----CSSCEEEEEECTT-SSEEEEEET-----------------TSCEEEEETTTCCEEE
T ss_pred             CcceeEeecccceeeeEEcc----CCCcceeeecccC-CCEEEEEeC-----------------CCeEEEEeeccceeeE
Confidence            44466677776544322211    1123456778884 666655322                 2333333333222211


Q ss_pred             eec---------------------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCcee--eecCCCCCceeee
Q 048181          194 LLR---------------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFD--IINFQAKPHNIKR  250 (310)
Q Consensus       194 ~~~---------------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~--~~~l~g~Pdgl~~  250 (310)
                      ...                     ............++. ++++-+..+.|..+++..   +...  +..-......+++
T Consensus       180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~---~~~~~~~~~~~~~v~~~~~  255 (317)
T d1vyhc1         180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVLF  255 (317)
T ss_dssp             EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTT---TEEEEEEECCSSCEEEEEE
T ss_pred             EEecCCCCceEEEEeeccccceeeccccceeeeeccCCc-eeEeccCCCEEEEEECCC---CcEEEEEeCCCCCEEEEEE
Confidence            111                     011112222333344 445556667777777643   2221  1222233467888


Q ss_pred             CCCCCCcEEEEEecCCCCCCCCceeeEEEC-CCCcEEEEEecCCCccccceeEEE
Q 048181          251 NPGLLQTFWEAAIITRQPAGTPVPIGQRIS-AFGAVLDTISFEAQYSTTPISEVQ  304 (310)
Q Consensus       251 d~~~dG~l~va~~~~~~~~~~~~~~v~~~~-~~G~~~~~~~~p~~~~~~~~t~~~  304 (310)
                      .+  +|++.++....        +.+..+| .+|+.+..+....+    .|+.+.
T Consensus       256 ~~--~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~h~~----~V~~~~  296 (317)
T d1vyhc1         256 HS--GGKFILSCADD--------KTLRVWDYKNKRCMKTLNAHEH----FVTSLD  296 (317)
T ss_dssp             CS--SSSCEEEEETT--------TEEEEECCTTSCCCEEEECCSS----CEEEEE
T ss_pred             CC--CCCEEEEEECC--------CeEEEEECCCCcEEEEEcCCCC----CEEEEE
Confidence            88  88866655443        2577777 46777777765433    455543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.13  Score=41.30  Aligned_cols=159  Identities=9%  Similarity=0.049  Sum_probs=91.6

Q ss_pred             CCCCCCCcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeE
Q 048181           29 FPPKAFGGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQL  108 (310)
Q Consensus        29 ~~~~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~L  108 (310)
                      |.|--..-.+++|.|+++++++...++.|.-++...+......                  .........++++ +++.+
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~------------------~~h~~~V~~~~~~-~~~~~   73 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL------------------KGHTDSVQDISFD-HSGKL   73 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE------------------CCCSSCEEEEEEC-TTSSE
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE------------------eCCCCcEEEEeee-ccccc
Confidence            3444345678999999998888888999999987643211110                  0112234678886 56666


Q ss_pred             EEEeC-CCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCC
Q 048181          109 YIADA-YSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPR  187 (310)
Q Consensus       109 yVad~-~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~  187 (310)
                      +++.. ...+...+....+......   + .......+.+.++ +...++-.                 .++.+..+|..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~-~~~~~~~~-----------------~d~~~~~~~~~  131 (317)
T d1vyhc1          74 LASCSADMTIKLWDFQGFECIRTMH---G-HDHNVSSVSIMPN-GDHIVSAS-----------------RDKTIKMWEVQ  131 (317)
T ss_dssp             EEEEETTSCCCEEETTSSCEEECCC---C-CSSCEEEEEECSS-SSEEEEEE-----------------TTSEEEEEETT
T ss_pred             ccccccccccccccccccccccccc---c-ccccceeeeccCC-CceEEeec-----------------cCcceeEeecc
Confidence            55433 3335555554433322211   1 1223456777774 55554432                 23566666766


Q ss_pred             CCeEEE-eecCCCCCceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          188 SSQVTV-LLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       188 ~g~~~~-~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      +++... +...-.....++++++++. +++-...+.|..+++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~~~~~~  173 (317)
T d1vyhc1         132 TGYCVKTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVA  173 (317)
T ss_dssp             TCCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETT
T ss_pred             cceeeeEEccCCCcceeeecccCCCE-EEEEeCCCeEEEEeec
Confidence            554433 3333445678999999984 4555566777777664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.47  E-value=0.0059  Score=54.59  Aligned_cols=117  Identities=11%  Similarity=0.002  Sum_probs=71.4

Q ss_pred             eEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeecc--CCCccccCccceEEeCCCCe-E-EEEcCCCccCccceeEeee
Q 048181           98 GLALHYATRQLYIADAYSGLLVVGPNGRLATQLATG--AEGQAFHFLDGLDVDQGTGV-V-YFTDASGVYDFRTIVKLNI  173 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~--~~g~~~~~pndvavd~~~G~-l-yvtd~~~~~~~~~~~~~~~  173 (310)
                      .+.+- .++.++..+ ...++.+|..+++.+.+...  +.. ......++.++|+ |+ | +.++...          +.
T Consensus        21 ~~~W~-~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~i~~~~~SpD-g~~i~~~~~~~~----------~~   86 (470)
T d2bgra1          21 SLRWI-SDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDE-FGHSINDYSISPD-GQFILLEYNYVK----------QW   86 (470)
T ss_dssp             CCEEC-SSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTT-SSSCCCEEEECTT-SSEEEEEEEEEE----------CS
T ss_pred             CCEeC-CCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhh-ccCccceeEECCC-CCEEEEEECCcc----------ee
Confidence            45553 566655444 34599999999877665432  121 1234568899995 66 3 3333211          11


Q ss_pred             ecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          174 TNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       174 ~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                      .....|.++.+|..++++..+...-.....+.|||||+.|.+.  .++.++.++..+
T Consensus        87 r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~  141 (470)
T d2bgra1          87 RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPN  141 (470)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTT
T ss_pred             eeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe--ecccceEEECCC
Confidence            1223477899999888776554433445678899999977664  456677776654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.29  E-value=0.074  Score=49.16  Aligned_cols=127  Identities=9%  Similarity=0.013  Sum_probs=70.6

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeC
Q 048181           44 VGGAFYTGVADGRILKYQA-PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGP  122 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~  122 (310)
                      +|.+|+++...++|+.++. +.+...+....+...       .............|+++.  +++||+.+....++.+|.
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~-------~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda  132 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDA-------STKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDA  132 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCG-------GGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEET
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCc-------ccccccccCcCCCcceee--CCeEEEEeCCCcEEeeeh
Confidence            5676666555789999996 434444433211100       000000111223588885  789999877767999999


Q ss_pred             CCCeEEEeeccCCCcc-ccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEE
Q 048181          123 NGRLATQLATGAEGQA-FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTV  193 (310)
Q Consensus       123 ~~~~~~~~~~~~~g~~-~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~  193 (310)
                      ++|++..-....+... ......-.+.  ++.+|+.....            +....|.|+.+|..||+..-
T Consensus       133 ~tG~~~w~~~~~~~~~~~~~t~~p~v~--~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~W  190 (571)
T d2ad6a1         133 KTGKINWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGA------------ELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCG------------GGTCCCEEEEEETTTCCEEE
T ss_pred             hhhhhhccccccccccccceeecCeEe--CCeEEEeeccc------------cccccCcEEEEECCCCcEEE
Confidence            9987632221111111 1111122333  47888876543            12346889999988887643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.09  E-value=0.011  Score=48.17  Aligned_cols=53  Identities=13%  Similarity=0.077  Sum_probs=38.3

Q ss_pred             ceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCC-----CeEEEEEecCC
Q 048181          179 GRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTG-----NRTLKYWLRGP  231 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~-----~~I~~~~~~~~  231 (310)
                      |.||.+|.++++.+.+...-....+.+|||||++|+++....     ..|++++..+.
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            568888887787777766655667889999999887764322     25888887653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.13  Score=44.08  Aligned_cols=146  Identities=11%  Similarity=0.096  Sum_probs=86.0

Q ss_pred             CcceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeC-
Q 048181           35 GGESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADA-  113 (310)
Q Consensus        35 ~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~-  113 (310)
                      ...++++.++| ++++...++.|..++...+.........            ..+.........+++. ++|+++++-. 
T Consensus       186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~------------~~l~~h~~~V~~l~~s-pdg~~l~sgs~  251 (393)
T d1sq9a_         186 FATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ------------HSMINNSNSIRSVKFS-PQGSLLAIAHD  251 (393)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC------------C---CCCCCEEEEEEC-SSTTEEEEEEE
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc------------cccccccceEEEcccc-cccceeeeecC
Confidence            35679999887 5678888999999998754322111100            0011112234678997 6777766532 


Q ss_pred             --CCc-EEEEeCCCCeEE-Eeecc---------CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCce
Q 048181          114 --YSG-LLVVGPNGRLAT-QLATG---------AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGR  180 (310)
Q Consensus       114 --~~g-i~~id~~~~~~~-~~~~~---------~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~  180 (310)
                        ..+ |..+|.++++.. .+...         ..| +-...+.++++| +|++.+|-..                 +|.
T Consensus       252 D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~g-H~~~V~~l~fsp-d~~~l~S~s~-----------------D~~  312 (393)
T d1sq9a_         252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA-HSSWVMSLSFND-SGETLCSAGW-----------------DGK  312 (393)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC--------CCBS-BSSCEEEEEECS-SSSEEEEEET-----------------TSE
T ss_pred             CCCcceeeecccccceeeeeeccccccccceeeeec-ccCceeeeccCC-CCCeeEEECC-----------------CCE
Confidence              223 555688776532 22111         011 223467899999 4888777543                 478


Q ss_pred             EEEEcCCCCeEEEeecC----C-CCCceeEEccCCCEE
Q 048181          181 LLSYNPRSSQVTVLLRN----L-TGPAGVAISVDSSFL  213 (310)
Q Consensus       181 l~~~d~~~g~~~~~~~~----l-~~pnGIa~~~dg~~L  213 (310)
                      |..+|.++++......+    + .....++++++|+.+
T Consensus       313 v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~  350 (393)
T d1sq9a_         313 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL  350 (393)
T ss_dssp             EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             EEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence            88888888865443322    1 134578999999854

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.64  E-value=0.11  Score=45.89  Aligned_cols=143  Identities=10%  Similarity=0.029  Sum_probs=74.5

Q ss_pred             cceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCe-EEE-EeC
Q 048181           36 GESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQ-LYI-ADA  113 (310)
Q Consensus        36 Pegia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~-LyV-ad~  113 (310)
                      +.++.|-+++.++|.+  ++.|+.++..++........             ..+...........+. ++|+ |.+ .+.
T Consensus        19 ~~~~~W~~d~~~~~~~--~~~~~~~~~~t~~~~~~~~~-------------~~~~~~~~~i~~~~~S-pDg~~i~~~~~~   82 (470)
T d2bgra1          19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLEN-------------STFDEFGHSINDYSIS-PDGQFILLEYNY   82 (470)
T ss_dssp             CCCCEECSSSEEEEES--SSCEEEEETTTCCEEEEECT-------------TTTTTSSSCCCEEEEC-TTSSEEEEEEEE
T ss_pred             ccCCEeCCCCEEEEEc--CCcEEEEECCCCCEEEEEch-------------hhhhhccCccceeEEC-CCCCEEEEEECC
Confidence            3456787888855543  67799999886543222111             1111222334578886 5665 433 331


Q ss_pred             C--------CcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEc
Q 048181          114 Y--------SGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYN  185 (310)
Q Consensus       114 ~--------~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d  185 (310)
                      .        ..++.+|.++++...+....     .....+.++|+ |...+.-.                  +..++.++
T Consensus        83 ~~~~r~s~~~~~~l~d~~~~~~~~l~~~~-----~~~~~~~~SPD-G~~ia~~~------------------~~~l~~~~  138 (470)
T d2bgra1          83 VKQWRHSYTASYDIYDLNKRQLITEERIP-----NNTQWVTWSPV-GHKLAYVW------------------NNDIYVKI  138 (470)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCCC-----TTEEEEEECSS-TTCEEEEE------------------TTEEEEES
T ss_pred             cceeeeccCceEEEEECCCCcccccccCC-----ccccccccccC-cceeeEee------------------cccceEEE
Confidence            1        12778899988765442211     12235667774 54322111                  12344444


Q ss_pred             CCCCeEEEee-------------------cCCCCCceeEEccCCCEEEEEec
Q 048181          186 PRSSQVTVLL-------------------RNLTGPAGVAISVDSSFLLVSEF  218 (310)
Q Consensus       186 ~~~g~~~~~~-------------------~~l~~pnGIa~~~dg~~Lyv~d~  218 (310)
                      ..+++...+.                   .......++.|||||++|.+...
T Consensus       139 ~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             CCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence            4333322211                   12234578999999998877643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.51  E-value=0.43  Score=37.96  Aligned_cols=63  Identities=13%  Similarity=0.039  Sum_probs=35.6

Q ss_pred             eeEEEecCCC-eEEEE-eC-C----CcEEEEeCCCCeEEEeeccCCC--ccccCccceEEeCCCCeEEEEcCC
Q 048181           97 FGLALHYATR-QLYIA-DA-Y----SGLLVVGPNGRLATQLATGAEG--QAFHFLDGLDVDQGTGVVYFTDAS  160 (310)
Q Consensus        97 ~Gla~d~~~g-~LyVa-d~-~----~gi~~id~~~~~~~~~~~~~~g--~~~~~pndvavd~~~G~lyvtd~~  160 (310)
                      .+.++. ++| +|+.+ +. .    ..|++++..+++.+.+......  .........+.++++..|+++...
T Consensus        44 ~~p~~S-PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  115 (281)
T d1k32a2          44 NNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM  115 (281)
T ss_dssp             EEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred             cCEEEC-CCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEcc
Confidence            345676 455 45433 21 1    1388999998887766432111  122345677888864467777654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.42  E-value=0.36  Score=44.12  Aligned_cols=125  Identities=14%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN  123 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~  123 (310)
                      +|. +|+...+++|+.+|...+.+.+.+......   ..    ...........++++.  ++++|+.+....|+.+|.+
T Consensus        66 ~g~-vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~---~~----~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~  135 (560)
T d1kv9a2          66 DGV-IYTSMSWSRVIAVDAASGKELWRYDPEVAK---VK----ARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAK  135 (560)
T ss_dssp             TTE-EEEEEGGGEEEEEETTTCCEEEEECCCCCG---GG----GGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETT
T ss_pred             CCE-EEEECCCCeEEEEeCCCCCEEEEECCCCCc---cc----cccccccccccCccee--CCeEEEEeCCCEEEEEECC
Confidence            466 455567899999999976665543211000   00    0000111223366664  6789988777779999998


Q ss_pred             CCeEEEeeccCCCc-cccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          124 GRLATQLATGAEGQ-AFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       124 ~~~~~~~~~~~~g~-~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      +|+...-....+.. .......-.+.  ++.+++......            ....|.|..+|..||+..
T Consensus       136 tG~~~w~~~~~~~~~~~~~~~~p~v~--~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~  191 (560)
T d1kv9a2         136 TGKAIWSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAE------------YGVRGFVSAYDADTGKLA  191 (560)
T ss_dssp             TCCEEEEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTT------------TCCBCEEEEEETTTCCEE
T ss_pred             CCcEEeccCccCcccceeeeeeeeee--cCccccccccee------------ccccceEEEEECCCceEE
Confidence            88753222111111 11111122233  477777544321            223477888888888764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.21  Score=42.75  Aligned_cols=118  Identities=6%  Similarity=-0.060  Sum_probs=67.6

Q ss_pred             ceeeEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEeecc---CCCccccCccceEEeCCCCeEEEEcCCCccCccceeEe
Q 048181           95 RTFGLALHYATRQLYIADAYSGLLVVGPNGRLATQLATG---AEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKL  171 (310)
Q Consensus        95 ~P~Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~~~~---~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~  171 (310)
                      ....+++. +++.|..+.....|..+|.++++.......   ..+ +-...+.++++| +|++.++-....         
T Consensus       186 ~~~~v~~s-~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~-h~~~V~~l~~sp-dg~~l~sgs~D~---------  253 (393)
T d1sq9a_         186 FATSVDIS-ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN-NSNSIRSVKFSP-QGSLLAIAHDSN---------  253 (393)
T ss_dssp             CCCEEEEC-TTSEEEEECTTSEEEEEETTTTEEEEEEECCC---C-CCCCEEEEEECS-STTEEEEEEEET---------
T ss_pred             cEEEEEEC-CCCEEEEEeCCCcEEEEeeccccccccccccccccc-ccceEEEccccc-ccceeeeecCCC---------
Confidence            34567885 567554444333477889887654221111   111 223467899999 488877753210         


Q ss_pred             eeecCCCceEEEEcCCCCeEEEeec--------------CCCCCceeEEccCCCEEEEEecCCCeEEEEEecC
Q 048181          172 NITNDSTGRLLSYNPRSSQVTVLLR--------------NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRG  230 (310)
Q Consensus       172 ~~~~~~~G~l~~~d~~~g~~~~~~~--------------~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~  230 (310)
                           ..+.+..+|..+++......              .-..-+.|+|+|||+ ++++-...+.|+.+++..
T Consensus       254 -----t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         254 -----SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             -----TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT
T ss_pred             -----CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCC
Confidence                 01234445555544322211              111236799999998 567777888999888753

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.75  Score=40.76  Aligned_cols=169  Identities=7%  Similarity=-0.002  Sum_probs=87.3

Q ss_pred             EEEecCCCeEEEEe--CCC---cEEEEeCCCCeEEEeeccCCCcccc-CccceEEeCCCCeEEE---EcCCCccCcccee
Q 048181           99 LALHYATRQLYIAD--AYS---GLLVVGPNGRLATQLATGAEGQAFH-FLDGLDVDQGTGVVYF---TDASGVYDFRTIV  169 (310)
Q Consensus        99 la~d~~~g~LyVad--~~~---gi~~id~~~~~~~~~~~~~~g~~~~-~pndvavd~~~G~lyv---td~~~~~~~~~~~  169 (310)
                      +.+. +++++++.-  ...   .+..+|..+++.+.+.......=+. ......+.+++..+++   ++.+.        
T Consensus       260 ~~W~-~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g--------  330 (465)
T d1xfda1         260 VKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG--------  330 (465)
T ss_dssp             EEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS--------
T ss_pred             eEEc-CCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecc--------
Confidence            4553 677877753  222   2778899888776654432211011 1234567774333333   33221        


Q ss_pred             EeeeecCCCceEEEEc-------CCCCeEEEeecC-CCCCceeEEccCCCEEEEEecC----CCeEEEEEecCCCCCcee
Q 048181          170 KLNITNDSTGRLLSYN-------PRSSQVTVLLRN-LTGPAGVAISVDSSFLLVSEFT----GNRTLKYWLRGPRANSFD  237 (310)
Q Consensus       170 ~~~~~~~~~G~l~~~d-------~~~g~~~~~~~~-l~~pnGIa~~~dg~~Lyv~d~~----~~~I~~~~~~~~~~g~~~  237 (310)
                              .+.+++++       ...+..+.+..+ ...-+=++++.+++.||++-+.    ...|++++++|......-
T Consensus       331 --------~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~l  402 (465)
T d1xfda1         331 --------RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCL  402 (465)
T ss_dssp             --------SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCS
T ss_pred             --------cCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceee
Confidence                    22344442       111112222221 1111224799999999997653    346999998864221110


Q ss_pred             eecCC--CCCceeeeCCCCCCcEEEEEecCCCCCCCCceee-EEECCCCcEEEEEec
Q 048181          238 IINFQ--AKPHNIKRNPGLLQTFWEAAIITRQPAGTPVPIG-QRISAFGAVLDTISF  291 (310)
Q Consensus       238 ~~~l~--g~Pdgl~~d~~~dG~l~va~~~~~~~~~~~~~~v-~~~~~~G~~~~~~~~  291 (310)
                      ...+.  +.-....+++  +|..+|-.+..-.     .|.+ +.-+.+|+.+..++.
T Consensus       403 t~~~~~~~~~~~~~~S~--~~~y~v~~~s~~~-----~P~~~~~~~~~~~~~~~Le~  452 (465)
T d1xfda1         403 SCDLVENCTYFSASFSH--SMDFFLLKCEGPG-----VPMVTVHNTTDKKKMFDLET  452 (465)
T ss_dssp             STTSSSSCCCCEEEECT--TSSEEEEECCSSS-----SCCEEEEETTTCCEEEEEEC
T ss_pred             ccccCCCCCEEEEEECC--CCCEEEEEeecCC-----CCeEEEEECCCCCEEEEEcC
Confidence            01111  2234688999  9998886555421     1232 334578998888764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.09  E-value=0.72  Score=42.13  Aligned_cols=125  Identities=14%  Similarity=0.164  Sum_probs=69.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEEeCC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVVGPN  123 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~id~~  123 (310)
                      +|. +|+...+++|+.++.+.+...+.........   .+    ..........|+++.  ++++|+......++.+|.+
T Consensus        77 ~g~-vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~---~~----~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~  146 (573)
T d1kb0a2          77 DGI-MYVSASWSVVHAIDTRTGNRIWTYDPQIDRS---TG----FKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAA  146 (573)
T ss_dssp             TTE-EEEECGGGCEEEEETTTTEEEEEECCCCCGG---GG----GGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETT
T ss_pred             CCE-EEEECCCCeEEEEeCCCCCeEEEeCCCCCcc---cc----cccccccccccceEE--CCcEEEEecccceeeeccc
Confidence            455 5556678899999999766666532110000   00    000111223477774  7889998777679999999


Q ss_pred             CCeEEEeeccCCCcc--ccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          124 GRLATQLATGAEGQA--FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       124 ~~~~~~~~~~~~g~~--~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      +|+...-....++..  ......-.+.  ++.+|+.....            +....|.|+.+|..||+..
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~  203 (573)
T d1kb0a2         147 TGKEVWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGA------------EYGVRGYITAYDAETGERK  203 (573)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCT------------TTCCBCEEEEEETTTCCEE
T ss_pred             cccceecccCccCCcceEEeecceEEE--eccEEEeeccc------------cccccceEEEEecCCccce
Confidence            887642222222211  1111122233  47888765432            1223578888888888764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.6  Score=37.05  Aligned_cols=104  Identities=11%  Similarity=0.073  Sum_probs=61.4

Q ss_pred             ceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC--eEEEEEecCCCCCceeeecCCCCCceeeeCCCCCC
Q 048181          179 GRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN--RTLKYWLRGPRANSFDIINFQAKPHNIKRNPGLLQ  256 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~--~I~~~~~~~~~~g~~~~~~l~g~Pdgl~~d~~~dG  256 (310)
                      -.++.++.+++....+...........++|||+.++......+  .|+.++..+   +..++....+.-...++++  ||
T Consensus       151 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~p~~SP--DG  225 (269)
T d2hqsa1         151 PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGVQVLSSTFLDETPSLAP--NG  225 (269)
T ss_dssp             CEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---CCEEECCCSSSCEEEEECT--TS
T ss_pred             ceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccc---ccceEeecCccccceEECC--CC
Confidence            3577777766655444433333446689999998877665544  444554432   3333311122233467898  99


Q ss_pred             c-E-EEEEecCCCCCCCCceeeEEECCCCcEEEEEecCCC
Q 048181          257 T-F-WEAAIITRQPAGTPVPIGQRISAFGAVLDTISFEAQ  294 (310)
Q Consensus       257 ~-l-~va~~~~~~~~~~~~~~v~~~~~~G~~~~~~~~p~~  294 (310)
                      + | |.+.....       ..+.+++.+|+....+....+
T Consensus       226 ~~i~f~s~~~~~-------~~l~~~~~dg~~~~~lt~~~g  258 (269)
T d2hqsa1         226 TMVIYSSSQGMG-------SVLNLVSTDGRFKARLPATDG  258 (269)
T ss_dssp             SEEEEEEEETTE-------EEEEEEETTSCCEEECCCSSS
T ss_pred             CEEEEEEcCCCC-------cEEEEEECCCCCEEEEeCCCC
Confidence            6 3 55544432       467889999987777666544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.65  Score=37.02  Aligned_cols=140  Identities=9%  Similarity=0.029  Sum_probs=70.5

Q ss_pred             EEecCCCeEEEEeCCCc-EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCC
Q 048181          100 ALHYATRQLYIADAYSG-LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDST  178 (310)
Q Consensus       100 a~d~~~g~LyVad~~~g-i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~  178 (310)
                      ++.+.+..++++....+ +..++..+.........   ..-.....++++++ |...++-.                 .+
T Consensus       125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~-~~~l~~g~-----------------~d  183 (287)
T d1pgua2         125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT---PLRAKPSYISISPS-ETYIAAGD-----------------VM  183 (287)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS---CCSSCEEEEEECTT-SSEEEEEE-----------------TT
T ss_pred             eeeccCcceeeeccccceeeeeeccccceeeeeee---ccCCceeEEEeccC-cccccccc-----------------cc
Confidence            34323455656544433 55566543322211111   11123578999995 66544432                 23


Q ss_pred             ceEEEEcCCCCeEEEee--cCCCCCceeEEccCCC---------EEEEEecCCCeEEEEEecCCCCCceee-ecCCCCCc
Q 048181          179 GRLLSYNPRSSQVTVLL--RNLTGPAGVAISVDSS---------FLLVSEFTGNRTLKYWLRGPRANSFDI-INFQAKPH  246 (310)
Q Consensus       179 G~l~~~d~~~g~~~~~~--~~l~~pnGIa~~~dg~---------~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~g~Pd  246 (310)
                      |.+..+|..+++.....  ..-..-+.++|+|+++         .++++-...+.|+.+++..+. ..... ..-.+...
T Consensus       184 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-~~~~~~~~h~~~V~  262 (287)
T d1pgua2         184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVN  262 (287)
T ss_dssp             SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTTCEE
T ss_pred             ccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC-eEEEEeCCCCCCeE
Confidence            67777887666543221  1122346677776542         245666677788888875321 11222 12223356


Q ss_pred             eeeeCCCCCCcEEEEEe
Q 048181          247 NIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       247 gl~~d~~~dG~l~va~~  263 (310)
                      .+++.+  ++.|..+..
T Consensus       263 ~v~~~~--~~~l~s~g~  277 (287)
T d1pgua2         263 NLLWET--PSTLVSSGA  277 (287)
T ss_dssp             EEEEEE--TTEEEEEET
T ss_pred             EEEECC--CCEEEEEEC
Confidence            677777  776544433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.77  Score=36.80  Aligned_cols=151  Identities=13%  Similarity=0.061  Sum_probs=78.0

Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCc
Q 048181           37 ESIAFEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSG  116 (310)
Q Consensus        37 egia~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~g  116 (310)
                      ....+..++..+++...++.|..++..........                  ......-..+.++  .+.|+.+.....
T Consensus       179 ~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~------------------~~~~~~v~~~~~~--~~~l~s~s~d~~  238 (342)
T d2ovrb2         179 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL------------------TGHQSLTSGMELK--DNILVSGNADST  238 (342)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE------------------CCCCSCEEEEEEE--TTEEEEEETTSC
T ss_pred             ccccccCCCCEEEEEeCCCeEEEeecccceeeeEe------------------cccccceeEEecC--CCEEEEEcCCCE
Confidence            34455556777777777888887876643221110                  0111122355554  344544444445


Q ss_pred             EEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeec
Q 048181          117 LLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLR  196 (310)
Q Consensus       117 i~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~  196 (310)
                      |..++....+......... ........+..+   ++++++-.                 .+|.|..+|..+++......
T Consensus       239 i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~s~s-----------------~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         239 VKIWDIKTGQCLQTLQGPN-KHQSAVTCLQFN---KNFVITSS-----------------DDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EEEEETTTCCEEEEECSTT-SCSSCEEEEEEC---SSEEEEEE-----------------TTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEecccccccccccccc-eeeeceeecccC---CCeeEEEc-----------------CCCEEEEEECCCCCEEEEEe
Confidence            7778876654432222111 111222233333   44555432                 35788888887776532221


Q ss_pred             CC------CCCceeEEccCCCEEEEEecCC----CeEEEEEec
Q 048181          197 NL------TGPAGVAISVDSSFLLVSEFTG----NRTLKYWLR  229 (310)
Q Consensus       197 ~l------~~pnGIa~~~dg~~Lyv~d~~~----~~I~~~~~~  229 (310)
                      ..      ..-+.++++|++. ++++-...    .+|+.++++
T Consensus       298 ~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         298 TLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             ECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECC
T ss_pred             cccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCC
Confidence            11      1246899999986 44444433    368888775

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.75  E-value=1.5  Score=39.96  Aligned_cols=80  Identities=4%  Similarity=0.012  Sum_probs=45.6

Q ss_pred             CCceEEEEcCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC----CCCceeee
Q 048181          177 STGRLLSYNPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ----AKPHNIKR  250 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~----g~Pdgl~~  250 (310)
                      +.|+|..+|+.||+..-... ....-.|..... +..+|+. +..++++.|+...   |+.-= ..++    +.|  |..
T Consensus       442 ~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Ta-gglVf~G-~~dg~l~A~Da~t---Ge~lW~~~l~~~~~a~P--~ty  514 (571)
T d2ad6a1         442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTK-GGLVWYA-TLDGYLKALDNKD---GKELWNFKMPSGGIGSP--MTY  514 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEET-TTEEEEE-CTTSEEEEEETTT---CCEEEEEECSSCCCSCC--EEE
T ss_pred             CcccEEEeccCCCceeeEcCCCCCCCcceeEec-CCEEEEE-CCCCeEEEEECCC---CcEEEEEECCCCceecc--eEE
Confidence            35789999999998653222 222222343333 4556654 6678888887642   33211 2333    334  555


Q ss_pred             CCCCCCcEEEEEecC
Q 048181          251 NPGLLQTFWEAAIIT  265 (310)
Q Consensus       251 d~~~dG~l~va~~~~  265 (310)
                      ..  ||..||+...+
T Consensus       515 ~~--dGkqYi~v~~g  527 (571)
T d2ad6a1         515 SF--KGKQYIGSMYG  527 (571)
T ss_dssp             EE--TTEEEEEEEEC
T ss_pred             EE--CCEEEEEEEec
Confidence            56  78999876543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.67  E-value=1.4  Score=40.06  Aligned_cols=71  Identities=15%  Similarity=0.243  Sum_probs=45.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCC-CCceeeEEEecCCCeEEEEeCCCcEEEEeC
Q 048181           44 VGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPI-CRRTFGLALHYATRQLYIADAYSGLLVVGP  122 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~P~Gla~d~~~g~LyVad~~~gi~~id~  122 (310)
                      +|. +|+...+++|+.++++.+.+.+.+.....     .     ..... .....|+++.  ++++|+......++.+|.
T Consensus        68 ~g~-vy~~t~~~~v~AlDa~TG~~lW~~~~~~~-----~-----~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda  134 (582)
T d1flga_          68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLP-----D-----DIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNK  134 (582)
T ss_dssp             TTE-EEEEETTTEEEEEESSSCCEEEEEECCCC-----T-----TCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEES
T ss_pred             CCE-EEEeCCCCeEEEEeCCCCCeEEEEcCCCC-----C-----ccccccccccCCceEe--CCceEEecCCCeEEEecc
Confidence            455 55666789999999986655554321110     0     00011 1223478875  788999888777999999


Q ss_pred             CCCeE
Q 048181          123 NGRLA  127 (310)
Q Consensus       123 ~~~~~  127 (310)
                      ++|+.
T Consensus       135 ~tG~~  139 (582)
T d1flga_         135 NTGKV  139 (582)
T ss_dssp             SSCCE
T ss_pred             cccce
Confidence            98865

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.41  E-value=1.6  Score=39.87  Aligned_cols=128  Identities=8%  Similarity=-0.007  Sum_probs=67.7

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCC----CeEEEEeCCCcEE
Q 048181           44 VGGAFYTGVADGRILKYQA-PDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYAT----RQLYIADAYSGLL  118 (310)
Q Consensus        44 ~G~l~~~d~~~g~I~r~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~----g~LyVad~~~gi~  118 (310)
                      +|.+|+++...++++.++. +.+.+.+.+.......       ..........-.|+++...+    .++|+......|+
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~-------~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~  134 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPA-------ARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVA  134 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGG-------GGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEE
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcc-------cccccccccccceeEEecCCCCCceEEEEEeCCCCeE
Confidence            5676666655688999985 4444444432111000       00000111122478774222    2588887766799


Q ss_pred             EEeCCCCeEEEeeccCCCcc-ccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEE
Q 048181          119 VVGPNGRLATQLATGAEGQA-FHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVT  192 (310)
Q Consensus       119 ~id~~~~~~~~~~~~~~g~~-~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~  192 (310)
                      .+|.++|+...-....+... ......-.+.  ++.+|+.....            +....|.|..||..||+..
T Consensus       135 Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~------------e~~~~G~v~A~Da~TG~~~  195 (596)
T d1w6sa_         135 ALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGA------------ELGVRGYLTAYDVKTGEQV  195 (596)
T ss_dssp             EEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCG------------GGTCCCEEEEEETTTCCEE
T ss_pred             eeccccCceeccccccccccccccccCCcEE--CCeEEEeeccc------------cccccCceEEEECCCCcEE
Confidence            99999987643222111111 1111122344  48888876543            2234588888888888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.98  E-value=1.1  Score=35.51  Aligned_cols=120  Identities=10%  Similarity=0.067  Sum_probs=62.5

Q ss_pred             CceeeEEEecCCCe-EEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEee
Q 048181           94 RRTFGLALHYATRQ-LYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLN  172 (310)
Q Consensus        94 ~~P~Gla~d~~~g~-LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~  172 (310)
                      .....++++ +++. |++++....|..+|..+++...  ....+ +-...+.+++.|. +..........    .   .+
T Consensus       163 ~~v~~~~~s-~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~-h~~~v~~~~~~p~-~~~~~~~~~~~----~---~l  230 (287)
T d1pgua2         163 AKPSYISIS-PSETYIAAGDVMGKILLYDLQSREVKT--SRWAF-RTSKINAISWKPA-EKGANEEEIEE----D---LV  230 (287)
T ss_dssp             SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEE--CCSCC-CSSCEEEEEECCC-C------CCSC----C---EE
T ss_pred             CceeEEEec-cCccccccccccccccceeeccccccc--ccccc-cccccceeeeccc-ccccccccCCC----C---ee
Confidence            345678997 5555 5555555568888988765432  11221 1223567777773 54332222110    0   01


Q ss_pred             eecCCCceEEEEcCCC-CeE-EEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEE
Q 048181          173 ITNDSTGRLLSYNPRS-SQV-TVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW  227 (310)
Q Consensus       173 ~~~~~~G~l~~~d~~~-g~~-~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~  227 (310)
                      .....+|.++.+|..+ ++. +.+...-..-+++++++++. | ++-...+.|+.++
T Consensus       231 ~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW~  285 (287)
T d1pgua2         231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L-VSSGADACIKRWN  285 (287)
T ss_dssp             EEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-E-EEEETTSCEEEEE
T ss_pred             EeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-E-EEEECCCeEEEEE
Confidence            2334567888888644 322 22222233458999999874 4 4545566666554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=1.2  Score=35.06  Aligned_cols=62  Identities=11%  Similarity=-0.020  Sum_probs=42.4

Q ss_pred             eEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCC
Q 048181          145 LDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGN  221 (310)
Q Consensus       145 vavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~  221 (310)
                      -+.+|++..|.|+....               ....++.++..++..+.+...........++|||+.++......+
T Consensus        44 P~wSPDGk~IAf~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~  105 (269)
T d2hqsa1          44 PAWSPDGSKLAYVTFES---------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG  105 (269)
T ss_dssp             EEECTTSSEEEEEECTT---------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             eEECCCCCEEEEEEeec---------------cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC
Confidence            47888655665553321               234577788777777777766667788999999998777655443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.38  Score=42.86  Aligned_cols=112  Identities=8%  Similarity=-0.024  Sum_probs=61.2

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEE-EEcCCCccCccceeEeeeecCCCceEEE
Q 048181          105 TRQLYIADAYSGLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVY-FTDASGVYDFRTIVKLNITNDSTGRLLS  183 (310)
Q Consensus       105 ~g~LyVad~~~gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~ly-vtd~~~~~~~~~~~~~~~~~~~~G~l~~  183 (310)
                      ++.++..+....|+.++.++++.+.+.....-.. ..+.+..++|+...++ .+|....+          .....|.++.
T Consensus        27 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~SpD~~~vl~~~~~~~~~----------r~s~~~~~~i   95 (465)
T d1xfda1          27 DTEFIYREQKGTVRLWNVETNTSTVLIEGKKIES-LRAIRYEISPDREYALFSYNVEPIY----------QHSYTGYYVL   95 (465)
T ss_dssp             SSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTT-TTCSEEEECTTSSEEEEEESCCCCS----------SSCCCSEEEE
T ss_pred             CCcEEEEeCCCcEEEEECCCCCEEEEEcCccccc-cccceeEECCCCCeEEEEEccccee----------EeeccccEEE
Confidence            4444444444458888888776655543211111 2345677999533444 45543211          1233578899


Q ss_pred             EcCCCCeEEEeecCCCCC---ceeEEccCCCEEEEEecCCCeEEEEEec
Q 048181          184 YNPRSSQVTVLLRNLTGP---AGVAISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       184 ~d~~~g~~~~~~~~l~~p---nGIa~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      +|..+++.+.+...-..+   .-..|||||+.|.++  ..+.|+..+..
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~  142 (465)
T d1xfda1          96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYYCAHV  142 (465)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEEESSS
T ss_pred             EEccCCceeeccCccCCccccceeeeccCCceEEEE--ecceEEEEecC
Confidence            998888776654322122   236788888866443  24456655543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.24  E-value=3.9  Score=36.95  Aligned_cols=81  Identities=15%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             CCCceEEEEcCCCCeEEEeec-CCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCceee-ecCC----CCCceee
Q 048181          176 DSTGRLLSYNPRSSQVTVLLR-NLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSFDI-INFQ----AKPHNIK  249 (310)
Q Consensus       176 ~~~G~l~~~d~~~g~~~~~~~-~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~~~-~~l~----g~Pdgl~  249 (310)
                      .+.|+|+.+|+.+|++.--.. +.+.-.|. ++-.|..+|+ -+..+.++.||...   |+.-= ..++    +.|  |.
T Consensus       463 ~~~G~l~AiD~~TG~i~W~~~~~~p~~~g~-lstagglVF~-Gt~dg~l~A~Da~T---Ge~LW~~~~~~~~~~~P--~t  535 (582)
T d1flga_         463 DHVGSLRAMDPVSGKVVWEHKEHLPLWAGV-LATAGNLVFT-GTGDGYFKAFDAKS---GKELWKFQTGSGIVSPP--IT  535 (582)
T ss_dssp             SCSEEEEEECTTTCCEEEEEEESSCCCSCC-EEETTTEEEE-ECTTSEEEEEETTT---CCEEEEEECSSCCCSCC--EE
T ss_pred             CCCCeEEEEcCCCCcEEeecCCCCCCccce-eEEcCCeEEE-eCCCCeEEEEECCC---CcEeEEEECCCCccccC--EE
Confidence            356899999999997653222 22222233 3445555554 46677788887642   33211 2232    334  66


Q ss_pred             eCCCCCCcEEEEEecC
Q 048181          250 RNPGLLQTFWEAAIIT  265 (310)
Q Consensus       250 ~d~~~dG~l~va~~~~  265 (310)
                      ...  +|.-||+...+
T Consensus       536 y~~--~G~qYv~i~ag  549 (582)
T d1flga_         536 WEQ--DGEQYLGVTVG  549 (582)
T ss_dssp             EEE--TTEEEEEEEEC
T ss_pred             EEE--CCEEEEEEEeC
Confidence            666  89888876554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=2.2  Score=33.62  Aligned_cols=60  Identities=12%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             cCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEe
Q 048181          140 HFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSE  217 (310)
Q Consensus       140 ~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d  217 (310)
                      ...+.++++|+ +++++|-.                 .+|.|..+|.++++............-++++++|+.|.++-
T Consensus       252 ~~v~~l~~sp~-~~~lasg~-----------------~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         252 YPVNSIEFSPR-HKFLYTAG-----------------SDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             CCEEEEEECTT-TCCEEEEE-----------------TTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             ccceeEEecCC-ccEEEEEC-----------------CCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence            34578999995 77766643                 25789999988775433233333345689999999776653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.40  E-value=2.7  Score=33.42  Aligned_cols=68  Identities=12%  Similarity=-0.013  Sum_probs=42.0

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEE
Q 048181           41 FEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVV  120 (310)
Q Consensus        41 ~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~i  120 (310)
                      +..+|++++++..++.|.-++...+......                  ..-...-..|++. +++.|+.+.....|...
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l------------------~~H~~~V~~l~~s-~~~~l~s~s~D~~i~iw   79 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSINKKFLLQL------------------SGHDGGVWALKYA-HGGILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTEEEEEE------------------ECCSSCEEEEEEE-TTTEEEEEETTCCEEEE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCcEEEEE------------------ECCCCCEEEEEEc-CCCEEEEEecccccccc
Confidence            4456788888888999999998754322111                  0112335678886 56666655555457777


Q ss_pred             eCCCCeE
Q 048181          121 GPNGRLA  127 (310)
Q Consensus       121 d~~~~~~  127 (310)
                      +....+.
T Consensus        80 ~~~~~~~   86 (355)
T d1nexb2          80 DIKKGCC   86 (355)
T ss_dssp             ETTTTEE
T ss_pred             ccccccc
Confidence            7665543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=88.58  E-value=8.1  Score=34.57  Aligned_cols=81  Identities=14%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce----ee-ecCCCCCceeeeC
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF----DI-INFQAKPHNIKRN  251 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~----~~-~~l~g~Pdgl~~d  251 (310)
                      +.|+|..+|+.+|++.--...-....|=+++-.|..+|+ -+..+.++.|+.+.   |+.    ++ ....+.|  |...
T Consensus       436 ~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~-G~~dg~l~A~Da~t---Ge~LW~~~l~~~~~~~P--~ty~  509 (560)
T d1kv9a2         436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ-GTAAGQMHAYSADK---GEALWQFEAQSGIVAAP--MTFE  509 (560)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE-ECTTSEEEEEETTT---CCEEEEEECSSCCCSCC--EEEE
T ss_pred             cccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE-ECCCCcEEEEECCC---CcEeEEEECCCCccccC--EEEE
Confidence            458899999999976432211111123234444555554 45677888887642   332    11 2223344  5555


Q ss_pred             CCCCCcEEEEEecC
Q 048181          252 PGLLQTFWEAAIIT  265 (310)
Q Consensus       252 ~~~dG~l~va~~~~  265 (310)
                      .  ||+-||+...+
T Consensus       510 ~--dGkqyv~v~aG  521 (560)
T d1kv9a2         510 L--AGRQYVAIMAG  521 (560)
T ss_dssp             E--TTEEEEEEEEC
T ss_pred             E--CCEEEEEEEeC
Confidence            6  78888876554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.07  E-value=10  Score=33.98  Aligned_cols=81  Identities=12%  Similarity=0.171  Sum_probs=46.3

Q ss_pred             CCceEEEEcCCCCeEEEeecCCCCCceeEEccCCCEEEEEecCCCeEEEEEecCCCCCce----ee-ecCCCCCceeeeC
Q 048181          177 STGRLLSYNPRSSQVTVLLRNLTGPAGVAISVDSSFLLVSEFTGNRTLKYWLRGPRANSF----DI-INFQAKPHNIKRN  251 (310)
Q Consensus       177 ~~G~l~~~d~~~g~~~~~~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~~~~~~~g~~----~~-~~l~g~Pdgl~~d  251 (310)
                      +.|+|..+|+.+|++.--.......+|=+++-+|..||+ -+..++++.||...   |+.    ++ ....+.|  |...
T Consensus       455 ~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~-G~~dg~l~A~Da~T---Ge~LW~~~~~~~~~~~P--~ty~  528 (573)
T d1kb0a2         455 PFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ-GTADGRLVAYHAAT---GEKLWEAPTGTGVVAAP--STYM  528 (573)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE-ECTTSEEEEEETTT---CCEEEEEECSSCCCSCC--EEEE
T ss_pred             CcccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEE-ECCCCeEEEEECCC---CcEeEEEECCCCccccC--EEEE
Confidence            347899999999976532222212234345545665554 45677888887642   332    11 2223345  5545


Q ss_pred             CCCCCcEEEEEecC
Q 048181          252 PGLLQTFWEAAIIT  265 (310)
Q Consensus       252 ~~~dG~l~va~~~~  265 (310)
                      .  ||.-||+...+
T Consensus       529 ~--~GkQYv~v~~G  540 (573)
T d1kb0a2         529 V--DGRQYVSVAVG  540 (573)
T ss_dssp             E--TTEEEEEEEEC
T ss_pred             E--CCEEEEEEEeC
Confidence            5  78888877655

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.91  E-value=7.2  Score=30.33  Aligned_cols=85  Identities=12%  Similarity=-0.022  Sum_probs=47.1

Q ss_pred             EEEeCCC-CCCCcceEEEccCCCEEEEEeCCCeEEEEECC--CceEEeeeecCCCCccccCCCccccCCCCCCceeeEEE
Q 048181           25 TKILFPP-KAFGGESIAFEPVGGAFYTGVADGRILKYQAP--DGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLAL  101 (310)
Q Consensus        25 ~~~~~~~-~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~--g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~  101 (310)
                      +.+++.. .-.+-.+|+|.|+|+++++...++.|.-++.+  .....+...                 .........+++
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-----------------~~h~~~V~~v~f   64 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-----------------LRYKHPLLCCNF   64 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-----------------EECSSCEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe-----------------cCCCCCEEEEEE
Confidence            4455541 11344689999999988888889988877643  222221100                 001123457888


Q ss_pred             ecCCCeEEEE-eCCCcEEEEeCCCCe
Q 048181          102 HYATRQLYIA-DAYSGLLVVGPNGRL  126 (310)
Q Consensus       102 d~~~g~LyVa-d~~~gi~~id~~~~~  126 (310)
                      .+.++.++++ .....|...+...+.
T Consensus        65 ~~~~~~~l~sg~~d~~v~~w~~~~~~   90 (342)
T d1yfqa_          65 IDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             EESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             eCCCCCEEEEcccccceeeeeccccc
Confidence            6445555444 333346666765443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.58  E-value=7.8  Score=30.45  Aligned_cols=144  Identities=13%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCceEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEEEEeCCCcEEEE
Q 048181           41 FEPVGGAFYTGVADGRILKYQAPDGFTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLYIADAYSGLLVV  120 (310)
Q Consensus        41 ~d~~G~l~~~d~~~g~I~r~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~LyVad~~~gi~~i  120 (310)
                      ..+++++++....++.|..++..........                  .........+.+++....++++.....|..+
T Consensus       167 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  228 (355)
T d1nexb2         167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL------------------SGHTDRIYSTIYDHERKRCISASMDTTIRIW  228 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEE------------------CCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             cccccceeeeecccceeeeeecccccceeee------------------eccccccccccccccceeeecccccceEEee
Confidence            3445777777777888888876643322110                  0122334567776434445444444457778


Q ss_pred             eCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCC
Q 048181          121 GPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG  200 (310)
Q Consensus       121 d~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~  200 (310)
                      +.+++.......   + .-...+.+++++  . .+++-.                 .+|.|..+|..++........ ..
T Consensus       229 d~~~~~~~~~~~---~-h~~~v~~~~~~~--~-~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~-~~  283 (355)
T d1nexb2         229 DLENGELMYTLQ---G-HTALVGLLRLSD--K-FLVSAA-----------------ADGSIRGWDANDYSRKFSYHH-TN  283 (355)
T ss_dssp             ETTTCCEEEEEC---C-CSSCCCEEEECS--S-EEEEEC-----------------TTSEEEEEETTTCCEEEEEEC-TT
T ss_pred             eccccccccccc---c-cccccccccccc--c-eeeeee-----------------cccccccccccccceeccccc-CC
Confidence            887765432222   1 112235566653  3 333322                 247788888765543332222 23


Q ss_pred             Ccee-EEccCCCEEEEEecCCCeEEEEEec
Q 048181          201 PAGV-AISVDSSFLLVSEFTGNRTLKYWLR  229 (310)
Q Consensus       201 pnGI-a~~~dg~~Lyv~d~~~~~I~~~~~~  229 (310)
                      .+.+ +++++++ ++++- ..+.|..+++.
T Consensus       284 ~~~~~~~~~~~~-~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         284 LSAITTFYVSDN-ILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             CCCCCEEEECSS-EEEEE-ETTEEEEEETT
T ss_pred             ceEEEEEcCCCC-EEEEE-eCCEEEEEECC
Confidence            3444 5667776 44544 36788888875

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=83.51  E-value=5  Score=31.12  Aligned_cols=137  Identities=13%  Similarity=0.012  Sum_probs=70.5

Q ss_pred             eEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEe---eccCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeee
Q 048181           98 GLALHYATRQLYIADAYSGLLVVGPNGRLATQL---ATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNIT  174 (310)
Q Consensus        98 Gla~d~~~g~LyVad~~~gi~~id~~~~~~~~~---~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~  174 (310)
                      =|+++ ++|+||..-.+ .+++=.+.+..-+.+   ++.+....-+...-+-+|| .|.||....               
T Consensus        44 ~i~fs-P~G~LyaVr~~-~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP-~G~LyaVt~---------------  105 (235)
T d1tl2a_          44 FLFLS-PGGELYGVLND-KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVSK---------------  105 (235)
T ss_dssp             EEEEC-TTSCEEEEETT-EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEET---------------
T ss_pred             EEEEC-CCCcEEEEECC-eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECC-CceEEEecC---------------
Confidence            47775 68888866433 466554433211111   1111111222234578999 499996432               


Q ss_pred             cCCCceEEEEcCCCCeEEEe------e--cCCCCCceeEEccCCCEEEEEecCCCeEEEEE-ecCCCCCce-----e-ee
Q 048181          175 NDSTGRLLSYNPRSSQVTVL------L--RNLTGPAGVAISVDSSFLLVSEFTGNRTLKYW-LRGPRANSF-----D-II  239 (310)
Q Consensus       175 ~~~~G~l~~~d~~~g~~~~~------~--~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~~~-~~~~~~g~~-----~-~~  239 (310)
                          |.|||--|-+.+.+..      +  .+...-.-|=|+|+|. ||.....  +++|-. ..+.  ...     + +.
T Consensus       106 ----~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~-LYaV~~~--~l~k~~pP~~~--~d~WL~~st~ig  176 (235)
T d1tl2a_         106 ----DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVHGQ--QFYKALPPVSN--QDNWLARATKIG  176 (235)
T ss_dssp             ----TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEETT--EEEEECCCSST--TCCHHHHCEEEE
T ss_pred             ----cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCce-EEEEECC--cEEEcCCCCCC--Cchhhhhhhhhc
Confidence                4566665433322211      1  1222224677999995 8887443  455433 2221  111     1 11


Q ss_pred             -cCCCCCceeeeCCCCCCcEEEEEe
Q 048181          240 -NFQAKPHNIKRNPGLLQTFWEAAI  263 (310)
Q Consensus       240 -~l~g~Pdgl~~d~~~dG~l~va~~  263 (310)
                       ..-..+..|.+.+  +|+||-...
T Consensus       177 r~~w~~~~fi~Fs~--dG~L~~v~~  199 (235)
T d1tl2a_         177 QGGWDTFKFLFFSS--VGTLFGVQG  199 (235)
T ss_dssp             SSSGGGEEEEEECT--TSCEEEEET
T ss_pred             cCcccCceEEEECC--CCcEEEEeC
Confidence             1123477899999  999998743

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=83.49  E-value=8.2  Score=29.84  Aligned_cols=154  Identities=14%  Similarity=0.062  Sum_probs=77.9

Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCeEEEEECCCc--eEEeeeecCCCCccccCCCccccCCCCCCceeeEEEecCCCeEE
Q 048181           32 KAFGGESIAFEPVGGAFYTGVADGRILKYQAPDG--FTDFAFTTPTRSKAVCDGTTNLDLGPICRRTFGLALHYATRQLY  109 (310)
Q Consensus        32 ~~~~Pegia~d~~G~l~~~d~~~g~I~r~~~~g~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~Gla~d~~~g~Ly  109 (310)
                      .+..-.=|++.|+|+||-+-  ++.+++=.+...  ..-+..    .....|.|     +    .+-.-|-+| ++|-||
T Consensus        38 g~~n~~~i~fsP~G~LyaVr--~~~lY~Gp~~s~~nq~wf~~----atrIG~gg-----W----n~Fkflffd-P~G~Ly  101 (235)
T d1tl2a_          38 GWSNFKFLFLSPGGELYGVL--NDKIYKGTPPTHDNDNWMGR----AKKIGNGG-----W----NQFQFLFFD-PNGYLY  101 (235)
T ss_dssp             SCTTCSEEEECTTSCEEEEE--TTEEEEESCCCSTTCCHHHH----CEEEECSC-----G----GGCSEEEEC-TTSCEE
T ss_pred             cccceeEEEECCCCcEEEEE--CCeEEECCCCCcchHHHHHh----hhhcccCc-----c----cceEEEEEC-CCceEE
Confidence            34445558999999977554  667776544311  100000    00001111     0    122347787 789999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEeec---cCCCccccCccceEEeCCCCeEEEEcCCCccCccceeEeeeecCCCceEEEEcC
Q 048181          110 IADAYSGLLVVGPNGRLATQLAT---GAEGQAFHFLDGLDVDQGTGVVYFTDASGVYDFRTIVKLNITNDSTGRLLSYNP  186 (310)
Q Consensus       110 Vad~~~gi~~id~~~~~~~~~~~---~~~g~~~~~pndvavd~~~G~lyvtd~~~~~~~~~~~~~~~~~~~~G~l~~~d~  186 (310)
                      +... ..+++=.+-+.+......   .+....-+...-+-+||+ |.||....                   .++++-.|
T Consensus       102 aVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~-G~LYaV~~-------------------~~l~k~~p  160 (235)
T d1tl2a_         102 AVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN-GYLYAVHG-------------------QQFYKALP  160 (235)
T ss_dssp             EEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT-SCEEEEET-------------------TEEEEECC
T ss_pred             EecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCC-ceEEEEEC-------------------CcEEEcCC
Confidence            7653 358887765433221111   111111222335778994 99996532                   23555444


Q ss_pred             CCCe-------EEEe-ecCCCCCceeEEccCCCEEEEEecCCCeEEE
Q 048181          187 RSSQ-------VTVL-LRNLTGPAGVAISVDSSFLLVSEFTGNRTLK  225 (310)
Q Consensus       187 ~~g~-------~~~~-~~~l~~pnGIa~~~dg~~Lyv~d~~~~~I~~  225 (310)
                      -++.       .+.+ .+.-..+..|.|+|||+ |+-+.  ++.+++
T Consensus       161 P~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~--~g~~Y~  204 (235)
T d1tl2a_         161 PVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYE  204 (235)
T ss_dssp             CSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEE
T ss_pred             CCCCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEe--CCeEEe
Confidence            2211       1112 23334567999999997 65552  244543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=82.49  E-value=9.1  Score=31.43  Aligned_cols=115  Identities=11%  Similarity=0.075  Sum_probs=67.1

Q ss_pred             eeeEEEecCCCeEEEEeCC------C------cEEEEeCCCCeEEEeeccCCCccccCccceEEeCCCCeEEEEcCCCcc
Q 048181           96 TFGLALHYATRQLYIADAY------S------GLLVVGPNGRLATQLATGAEGQAFHFLDGLDVDQGTGVVYFTDASGVY  163 (310)
Q Consensus        96 P~Gla~d~~~g~LyVad~~------~------gi~~id~~~~~~~~~~~~~~g~~~~~pndvavd~~~G~lyvtd~~~~~  163 (310)
                      +...++...+|+|||.-..      .      .+..+|+.+++.+..... ......+..+.++.+ +|++|+.-...  
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~-~~~~~~~~~~~~~~~-~g~i~v~Gg~~--   96 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT-VTKHDMFCPGISMDG-NGQIVVTGGND--   96 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE-ECSCCCSSCEEEECT-TSCEEEECSSS--
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC-CCCcccceeEEEEec-CCcEEEeecCC--
Confidence            3344544578999996321      1      156789988754332211 111223445678888 59999975332  


Q ss_pred             CccceeEeeeecCCCceEEEEcCCCCeEEEeecCCCC---CceeEEccCCCEEEEEec------CCCeEEEEEecC
Q 048181          164 DFRTIVKLNITNDSTGRLLSYNPRSSQVTVLLRNLTG---PAGVAISVDSSFLLVSEF------TGNRTLKYWLRG  230 (310)
Q Consensus       164 ~~~~~~~~~~~~~~~G~l~~~d~~~g~~~~~~~~l~~---pnGIa~~~dg~~Lyv~d~------~~~~I~~~~~~~  230 (310)
                                    ...+.+||+.+...+... .+..   -.+.++.+||+ +|+.--      ....+.+|++..
T Consensus        97 --------------~~~~~~yd~~~~~w~~~~-~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          97 --------------AKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             --------------TTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             --------------CcceeEecCccCcccccc-cccccccccceeeecCCc-eeeeccccccccccceeeeecCCC
Confidence                          235788898877665543 2222   24678888987 555421      124578888653