Citrus Sinensis ID: 048215

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHAQIYVRNQTGSFGDSFSKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGFGASVDENAIPGNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFKQNHPDVGYAELS
cccccccccEEEcccccccccccHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccEEEEEEcccHHHccccccHHHHHHHcccEEEEEEEcccccccHHHHcccccccccccEEEEEcccHHHHHHcccccEEEcccccHHHHHHHHHHHHcccccccccccccc
ccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccEEEEEcccHHHHHHHHcHHHHHHHHcccEEEEEEcccccHHHHHHHHccccccccccEEEEEEccHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccccccHHHHc
srsstkkyDVFVsfrgedtlddFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHAQIYVrnqtgsfgdsFSKLEERFEKNSEKLQTWRKGLREvaglsgfhyrsirpeseLINEVVNNILKRLLEevfrprdnksqlVGVESRVEEIESLLSveskdvyalgfgasvdenaipgndlnsrrlSCMKVLIVFDDVTCFSQLESIIgsldwlmpvSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSrhafkqnhpdvgyaels
srsstkkydvfvsfrgedtldDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHAQIYVrnqtgsfgdSFSKLEERFEKNSEKLQTWRKGLrevaglsgfhyrsirpeseliNEVVNNILKRLleevfrprdnksqlvgvesRVEEIESLLSVESKDVYALGFGASVDENAIPGNDLNSRRLSCMKVLIVFDDVTCFSQLESiigsldwlmpVSRTIittrnkqvlrnWGVRKICEMEALEYHHALELFSRHAFKQNHPDVGYAELS
SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLvkaikasaisviiFSEDYASSRWCLDELAEILECKKEHAQIYVRNQTGSFGDSFSKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRPRDNKSQLVGvesrveeiesllsvesKDVYALGFGASVDENAIPGNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFKQNHPDVGYAELS
*******YDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHAQIYVRNQTGSF*****************LQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRPRD***QLVGVESRVEEIESLLSVESKDVYALGFGASVDENAIPGNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFK************
***STKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHAQIYVRNQTGSFGDSFSKLEER*****EKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGFGASVDENAIPGNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFKQNHPD*GYAELS
SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHAQIYVRNQTGSFGDSFSKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGFGASVDENAIPGNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFKQNHPDVGYAELS
***STKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHAQIYVRNQTGSFGDSFSKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGFGASVDENAIPGNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFKQNHPDVGY**LS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDELAEILECKKEHAQIYVRNQTGSFGDSFSKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKDVYALGFGASVDENAIPGNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFKQNHPDVGYAELS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
O23530 1301 Protein SUPPRESSOR OF npr no no 0.973 0.228 0.320 2e-42
O82500 1095 Putative disease resistan no no 0.957 0.266 0.320 8e-41
Q40392 1144 TMV resistance protein N N/A no 0.622 0.166 0.390 4e-33
Q9FHE9354 Protein PHLOEM PROTEIN 2- no no 0.527 0.454 0.354 6e-22
Q9C5Q9411 Protein PHLOEM PROTEIN 2- no no 0.406 0.301 0.384 3e-17
Q9SZ67 1895 Probable WRKY transcripti no no 0.855 0.137 0.252 1e-15
Q9FHE8392 Protein PHLOEM PROTEIN 2- no no 0.672 0.522 0.307 5e-14
Q9SYC9571 Vesicle-associated protei no no 0.416 0.222 0.326 3e-13
Q9FL92 1372 Probable WRKY transcripti no no 0.780 0.173 0.258 4e-11
Q9FH83 1288 Probable WRKY transcripti no no 0.777 0.184 0.261 3e-10
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 Back     alignment and function desciption
 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 183/371 (49%), Gaps = 74/371 (19%)

Query: 1   SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKA 60
           S S +++YDVF SFRGED  D F SHL   L  + I TFIDD++ R   I   L+ AIK 
Sbjct: 5   SSSGSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPELLSAIKE 63

Query: 61  SAISVIIFSEDYASSRWCLDELAEILECKKEHAQIY-----------VRNQTGSFGDSFS 109
           S I+++IFS++YASS WCL+EL EI +C     Q+            V+ QTG FG  F 
Sbjct: 64  SRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF- 122

Query: 110 KLEERFEKNSE-KLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRP 168
             EE  +  SE + Q+W++ L  VA ++G+  R    E+ +I E+  ++L++       P
Sbjct: 123 --EETCKAKSEDEKQSWKQALAAVAVMAGYDLRKWPSEAAMIEELAEDVLRK----TMTP 176

Query: 169 RDNKSQLVGVESRVEEIESLLSVESKDVYAL-------GFGASVDENAI----------- 210
            D+   LVG+E+ +E I+S+L +ESK+   +       G G S    A+           
Sbjct: 177 SDDFGDLVGIENHIEAIKSVLCLESKEARIMVGIWGQSGIGKSTIGRALYSKLSIQFHHR 236

Query: 211 --------PGNDLNS----------------------------RRLSCMKVLIVFDDVTC 234
                    G+D++                             +RL   KVLI+ DDV  
Sbjct: 237 AFITYKSTSGSDVSGMKLRWEKELLSEILGQKDIKIEHFGVVEQRLKQQKVLILLDDVDS 296

Query: 235 FSQLESIIGSLDWLMPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFKQ 294
              L++++G  +W    SR I+ T+++Q+L+   +  I E+E    H AL +  R AF +
Sbjct: 297 LEFLKTLVGKAEWFGSGSRIIVITQDRQLLKAHEIDLIYEVEFPSEHLALTMLCRSAFGK 356

Query: 295 NHPDVGYAELS 305
           + P   + EL+
Sbjct: 357 DSPPDDFKELA 367
Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.
Arabidopsis thaliana (taxid: 3702)
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 Back     alignment and function description
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 Back     alignment and function description
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 Back     alignment and function description
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 Back     alignment and function description
>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
255555357 1094 leucine-rich repeat-containing protein, 0.973 0.271 0.421 1e-61
255564976 944 TMV resistance protein N, putative [Rici 0.970 0.313 0.426 2e-61
255561496 876 TMV resistance protein N, putative [Rici 0.980 0.341 0.416 3e-61
317106744 947 JHS03A10.2 [Jatropha curcas] 0.977 0.314 0.420 1e-58
224127754 1125 tir-nbs-lrr resistance protein [Populus 0.970 0.263 0.390 2e-58
224127917 1470 tir-nbs-lrr resistance protein [Populus 0.967 0.200 0.391 3e-58
357462141 1545 Tir-nbs-lrr resistance protein [Medicago 0.977 0.192 0.392 9e-57
147858652 1241 hypothetical protein VITISV_004290 [Viti 0.990 0.243 0.396 1e-56
224145016 1254 tir-nbs-lrr resistance protein [Populus 0.983 0.239 0.4 3e-56
359493351 2816 PREDICTED: uncharacterized protein LOC10 0.980 0.106 0.424 4e-56
>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/363 (42%), Positives = 206/363 (56%), Gaps = 66/363 (18%)

Query: 6   KKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISV 65
           +KYDVF+SFRGEDT  +FTSHL++AL+ + I TFIDD L RG EIS SL+KAI+ S ISV
Sbjct: 21  EKYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKISV 80

Query: 66  IIFSEDYASSRWCLDELAEILECKKEHAQI-----------YVRNQTGSFGDSFSKLEER 114
           +I S+DY SS+WCL+EL +ILEC K   Q+           +VRNQTGSF D F++ EE 
Sbjct: 81  VIISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEES 140

Query: 115 FEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRPRDNKSQ 174
              + EK+Q+WR  L+EVA LSG+H  S RPE+E + E++  I+K+L +    P      
Sbjct: 141 LSVSKEKVQSWRAALKEVANLSGWHSTSTRPEAEAVKEIIEVIVKKLNQ--MSPNCYSRG 198

Query: 175 LVGVESRVEEIESLLSVESKDVYAL------GFGASVDENAI-----PGNDL-----NSR 218
           LVG+ESR++EIESLL + S +V  +      G G +    AI     P  ++     N+R
Sbjct: 199 LVGMESRIQEIESLLCLRSSNVRIVGIWGMGGLGKTTLARAIYDRIAPQFEICYFLSNAR 258

Query: 219 -----------------------------------RLSCMKVLIVFDDVTCFSQLESII- 242
                                              RL   KVLIV DD    +QL+ ++ 
Sbjct: 259 EQLQRCTLSELQNQLFSTLLEEQSTLNLQRSFIKDRLCRKKVLIVIDDADDSTQLQELLL 318

Query: 243 -GSLDWLMPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFKQNHPDVGY 301
               D+    SR IIT+R+KQVLRN    KI  M+ L+ H AL+LFS  AFKQ++P   +
Sbjct: 319 ESEPDYFGSGSRIIITSRDKQVLRNIARDKIYAMQKLKKHEALQLFSLKAFKQDNPTCRH 378

Query: 302 AEL 304
             L
Sbjct: 379 CRL 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas] Back     alignment and taxonomy information
>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357462141|ref|XP_003601352.1| Tir-nbs-lrr resistance protein [Medicago truncatula] gi|355490400|gb|AES71603.1| Tir-nbs-lrr resistance protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|147858652|emb|CAN82538.1| hypothetical protein VITISV_004290 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493351|ref|XP_002277841.2| PREDICTED: uncharacterized protein LOC100251634 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
UNIPROTKB|Q40392 1144 N "TMV resistance protein N" [ 0.527 0.140 0.393 1.2e-36
TAIR|locus:2032602 1163 AT1G72860 [Arabidopsis thalian 0.557 0.146 0.375 1.1e-35
TAIR|locus:2155189 980 AT5G49140 [Arabidopsis thalian 0.514 0.160 0.404 1.5e-34
TAIR|locus:2136108 1095 AT4G11170 [Arabidopsis thalian 0.521 0.145 0.377 2.2e-34
TAIR|locus:2151491 1123 AT5G46450 [Arabidopsis thalian 0.563 0.153 0.329 8.6e-34
TAIR|locus:2130319 796 RLM3 "RESISTANCE TO LEPTOSPHAE 0.688 0.263 0.342 2.3e-33
TAIR|locus:2098145 1240 AT3G44630 [Arabidopsis thalian 0.567 0.139 0.356 3.6e-33
TAIR|locus:2076043 1194 RPP1 "recognition of peronospo 0.567 0.144 0.356 5.2e-33
TAIR|locus:2162439 1008 AT5G22690 [Arabidopsis thalian 0.498 0.150 0.351 1.1e-32
TAIR|locus:2175991 1294 AT5G17680 [Arabidopsis thalian 0.626 0.147 0.354 1.4e-32
UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)] Back     alignment and assigned GO terms
 Score = 288 (106.4 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 68/173 (39%), Positives = 94/173 (54%)

Query:     1 SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQ-LNRGYEISESLXXXXX 59
             S SS   YDVF+SFRGEDT   FTSHLY  L+ + I+TF DD+ L  G  I   L     
Sbjct:     5 SSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIE 64

Query:    60 XXXXXXXXFSEDYASSRWCLDELAEILECKKEHAQI-----------YVRNQTGSFGDSF 108
                     FSE+YA+SRWCL+EL +I+ECK    Q            +VRNQ  SF  +F
Sbjct:    65 ESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAF 124

Query:   109 SKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRL 161
              + E +++ + E +Q WR  L E A L G      + +++ I ++V+ I  +L
Sbjct:   125 EEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKL 177
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
PLN03210 1153 PLN03210, PLN03210, Resistant to P 4e-42
smart00255140 smart00255, TIR, Toll - interleukin 1 - resistance 9e-30
pfam01582135 pfam01582, TIR, TIR domain 4e-29
PLN03194187 PLN03194, PLN03194, putative disease resistance pr 8e-13
pfam13676102 pfam13676, TIR_2, TIR domain 5e-11
PLN03210 1153 PLN03210, PLN03210, Resistant to P 9e-10
pfam00931 285 pfam00931, NB-ARC, NB-ARC domain 7e-05
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information 
 Score =  154 bits (391), Expect = 4e-42
 Identities = 76/211 (36%), Positives = 122/211 (57%), Gaps = 16/211 (7%)

Query: 1   SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKA 60
           S S    YDVF SF GED    F SH    L R+ I  F D+++ R   +   L +AI+ 
Sbjct: 6   SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRD 65

Query: 61  SAISVIIFSEDYASSRWCLDELAEILECKKEHAQI-----------YVRNQTGSFGDSFS 109
           S I+V++FS++YASS WCL+EL EI+ CK+E  Q+           +VR QTG FG++F 
Sbjct: 66  SRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFE 125

Query: 110 KLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRLLEEVFRPR 169
           K  +   K  ++   W++ L +VA + G+H ++   E+++I E+ N++L +L      P 
Sbjct: 126 KTCQN--KTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLN---LTPS 180

Query: 170 DNKSQLVGVESRVEEIESLLSVESKDVYALG 200
           ++    VG+E  + ++ SLL +ES++V  +G
Sbjct: 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVG 211

syringae 6; Provisional. Length = 1153
>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance Back     alignment and domain information
>gnl|CDD|216585 pfam01582, TIR, TIR domain Back     alignment and domain information
>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional Back     alignment and domain information
>gnl|CDD|222311 pfam13676, TIR_2, TIR domain Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
PLN03210 1153 Resistant to P. syringae 6; Provisional 100.0
PLN03194187 putative disease resistance protein; Provisional 100.0
PF01582141 TIR: TIR domain; InterPro: IPR000157 In Drosophila 99.78
smart00255140 TIR Toll - interleukin 1 - resistance. 99.74
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 99.74
PF00931 287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 99.63
PF13676102 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_ 99.46
KOG3678832 consensus SARM protein (with sterile alpha and arm 98.14
PF08937130 DUF1863: MTH538 TIR-like domain (DUF1863); InterPr 97.81
PF05729166 NACHT: NACHT domain 96.85
PF08357150 SEFIR: SEFIR domain; InterPro: IPR013568 This doma 96.14
PRK06893229 DNA replication initiation factor; Validated 95.88
PF10137125 TIR-like: Predicted nucleotide-binding protein con 95.58
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 95.31
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 94.83
PRK00411 394 cdc6 cell division control protein 6; Reviewed 94.26
PF13173128 AAA_14: AAA domain 93.89
PRK13342 413 recombination factor protein RarA; Reviewed 93.07
PF1327183 DUF4062: Domain of unknown function (DUF4062) 92.18
TIGR02928 365 orc1/cdc6 family replication initiation protein. M 89.24
PRK03992389 proteasome-activating nucleotidase; Provisional 87.84
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 87.37
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 85.9
PRK13341 725 recombination factor protein RarA/unknown domain f 85.54
PRK09087226 hypothetical protein; Validated 84.59
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 84.41
TIGR00635 305 ruvB Holliday junction DNA helicase, RuvB subunit. 83.66
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 83.57
COG4916329 Uncharacterized protein containing a TIR (Toll-Int 83.38
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 83.16
PLN03025 319 replication factor C subunit; Provisional 83.11
PRK08727233 hypothetical protein; Validated 81.85
PF02463220 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: 81.54
PRK00080 328 ruvB Holliday junction DNA helicase RuvB; Reviewed 80.57
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 80.23
>PLN03210 Resistant to P Back     alignment and domain information 
Probab=100.00  E-value=5.2e-65  Score=534.44  Aligned_cols=298  Identities=36%  Similarity=0.605  Sum_probs=265.8

Q ss_pred             CCCCCcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeCCCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhHHH
Q 048215            2 RSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCLDE   81 (305)
Q Consensus         2 ~s~~~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~E   81 (305)
                      +|+.++|||||||||+|||++|++|||+||.++||++|.|+++++|+.|++++++||++|+++|||||+|||+|+|||+|
T Consensus         7 ~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~e   86 (1153)
T PLN03210          7 SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNE   86 (1153)
T ss_pred             CCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccceE-----------EEEeCCCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccCCCCchhhhh
Q 048215           82 LAEILECKKEHAQI-----------YVRNQTGSFGDSFSKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELI  150 (305)
Q Consensus        82 L~~i~e~~~~~~~v-----------~Vr~q~g~f~~af~~~~~~~~~~~ekv~~Wr~aL~ev~~~~G~~~~~~~~e~~~I  150 (305)
                      |++|++|+++.+++           +||+|+|.||++|.++.++.  ..+++++|++||+++++++||++..+.+|+++|
T Consensus        87 l~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i  164 (1153)
T PLN03210         87 LLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMI  164 (1153)
T ss_pred             HHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHH
Confidence            99999999887775           89999999999999987654  346799999999999999999998877899999


Q ss_pred             hhhhhhhhhhccccccCCCCCCCCcccccchhhhHHHhhccCCCC---ceEeCC-C-----------cccccccc-----
Q 048215          151 NEVVNNILKRLLEEVFRPRDNKSQLVGVESRVEEIESLLSVESKD---VYALGF-G-----------ASVDENAI-----  210 (305)
Q Consensus       151 ~~Iv~~v~~~l~~~~~s~~~~~~~~vG~~~~~~~l~~~L~~~~~~---v~ivGi-G-----------~~v~e~~~-----  210 (305)
                      ++||++|.+++..++.   .+.+++||++.++++|..+|..+.++   +.|+|| |           ..+...|+     
T Consensus       165 ~~Iv~~v~~~l~~~~~---~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv  241 (1153)
T PLN03210        165 EEIANDVLGKLNLTPS---NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFI  241 (1153)
T ss_pred             HHHHHHHHHhhccccC---cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEe
Confidence            9999999999988776   77889999999999999999876666   556666 5           11111110     


Q ss_pred             --------------------------------------c----chhhhhhhhcCCceeEEeccCCCHHHHHHHHhcCCCC
Q 048215          211 --------------------------------------P----GNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWL  248 (305)
Q Consensus       211 --------------------------------------~----~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~  248 (305)
                                                            +    ....++++|+++|+||||||||+..+|+.+.+...|+
T Consensus       242 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~  321 (1153)
T PLN03210        242 DRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWF  321 (1153)
T ss_pred             eccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccC
Confidence                                                  0    1145678899999999999999999999999988999


Q ss_pred             CCCcEEEEEcCChHHHHhcCCCceEEcCCCChHHHHHHHHHhhcCCCCCCCCcccC
Q 048215          249 MPVSRTIITTRNKQVLRNWGVRKICEMEALEYHHALELFSRHAFKQNHPDVGYAEL  304 (305)
Q Consensus       249 ~~gsrIIiTTR~~~v~~~~~~~~~~~v~~L~~~ea~~Lf~~~Af~~~~~~~~~~~l  304 (305)
                      ++||+||||||+++++..++++++|+|+.|+.++||+||+++||++..|+++|+++
T Consensus       322 ~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l  377 (1153)
T PLN03210        322 GSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMEL  377 (1153)
T ss_pred             CCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence            99999999999999999988899999999999999999999999998887777665

syringae 6; Provisional
>PLN03194 putative disease resistance protein; Provisional Back     alignment and domain information
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo Back     alignment and domain information
>smart00255 TIR Toll - interleukin 1 - resistance Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PF13271 DUF4062: Domain of unknown function (DUF4062) Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown] Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
3jrn_A176 Crystal Structure Of Tir Domain From Arabidopsis Th 4e-19
3ozi_A204 Crystal Structure Of The Tir Domain From The Flax D 1e-18
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176 Back     alignment and structure 
Iteration: 1

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 1   SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDD-QLNRGYEISESLXXXXX 59
           S  +  KYDVF+SFRG DT  +F S LY  L R++I+TF DD +L  G   S  L     
Sbjct: 2   SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 60  XXXXXXXXFSEDYASSRWCLDELAEILECKKEHAQI-----------YVRNQTGSFGDSF 108
                    SE+YA+S WCLDEL  I++ +K+ +             +VR QTG   + F
Sbjct: 62  VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121
Query: 109 SKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNI 157
            K   R  ++ EK+  WR+ L   A LSG    S   +S+L++++ N I
Sbjct: 122 KKHASR--EDPEKVLKWRQALTNFAQLSG--DCSGDDDSKLVDKIANEI 166
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
3jrn_A176 AT1G72930 protein; TIR domain arabidopsis thaliana 4e-77
3ozi_A204 L6TR; plant TIR domain, plant protein; 2.30A {Linu 1e-75
3h16_A154 TIR protein; bacteria TIR domain, signaling protei 3e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
3ub2_A146 TOLL/interleukin-1 receptor domain-containing ADA 1e-12
2j67_A178 TOLL like receptor 10; TIR, IL-1, TLR10, membrane, 4e-07
1t3g_A159 X-linked interleukin-1 receptor accessory protein- 1e-06
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 4e-06
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 5e-06
1fyx_A149 TOLL-like receptor 2; beta-alpha-beta fold, signal 8e-04
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176 Back     alignment and structure
 Score =  232 bits (593), Expect = 4e-77
 Identities = 65/173 (37%), Positives = 94/173 (54%), Gaps = 16/173 (9%)

Query: 1   SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQ-LNRGYEISESLVKAIK 59
           S  +  KYDVF+SFRG DT  +F S LY  L R++I+TF DD+ L  G   S  L   I+
Sbjct: 2   SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61

Query: 60  ASAISVIIFSEDYASSRWCLDELAEILECKKEHAQI-----Y------VRNQTGSFGDSF 108
            S  +V++ SE+YA+S WCLDEL  I++ +K+ +       Y      VR QTG   + F
Sbjct: 62  VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121

Query: 109 SKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESELINEVVNNILKRL 161
            K   R   + EK+  WR+ L   A LSG        +S+L++++ N I  + 
Sbjct: 122 KKHASRE--DPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEISNKK 170
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204 Back     alignment and structure
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146 Back     alignment and structure
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178 Back     alignment and structure
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159 Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
3jrn_A176 AT1G72930 protein; TIR domain arabidopsis thaliana 100.0
3ozi_A204 L6TR; plant TIR domain, plant protein; 2.30A {Linu 100.0
3h16_A154 TIR protein; bacteria TIR domain, signaling protei 99.91
3ub2_A146 TOLL/interleukin-1 receptor domain-containing ADA 99.84
1fyx_A149 TOLL-like receptor 2; beta-alpha-beta fold, signal 99.79
2js7_A160 Myeloid differentiation primary response protein M 99.78
1t3g_A159 X-linked interleukin-1 receptor accessory protein- 99.78
2j67_A178 TOLL like receptor 10; TIR, IL-1, TLR10, membrane, 99.77
2a5y_B 549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 99.64
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.45
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.35
3j0a_A844 TOLL-like receptor 5; membrane protein, leucine-ri 99.34
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 99.21
1eiw_A111 Hypothetical protein MTH538; CHEY-like fold, flavo 97.39
1w5s_A 412 Origin recognition complex subunit 2 ORC2; replica 97.21
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 96.98
2chg_A226 Replication factor C small subunit; DNA-binding pr 96.93
2qen_A 350 Walker-type ATPase; unknown function; HET: ADP; 2. 96.67
2v1u_A 387 Cell division control protein 6 homolog; DNA repli 96.67
2qby_A 386 CDC6 homolog 1, cell division control protein 6 ho 96.52
2fna_A 357 Conserved hypothetical protein; structural genomic 96.48
2qby_B 384 CDC6 homolog 3, cell division control protein 6 ho 96.32
1sxj_B 323 Activator 1 37 kDa subunit; clamp loader, processi 95.8
1iqp_A 327 RFCS; clamp loader, extended AAA-ATPase domain, co 95.18
1fnn_A 389 CDC6P, cell division control protein 6; ORC1, AAA 95.13
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 94.8
3hyn_A189 Putative signal transduction protein; DUF1863 fami 93.87
2chq_A 319 Replication factor C small subunit; DNA-binding pr 93.18
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 92.5
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 91.94
1jr3_A 373 DNA polymerase III subunit gamma; processivity, pr 91.87
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 91.66
1hqc_A 324 RUVB; extended AAA-ATPase domain, complex with nuc 90.79
3bos_A242 Putative DNA replication factor; P-loop containing 89.41
2qp9_X 355 Vacuolar protein sorting-associated protein 4; ATP 86.54
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 86.3
3eie_A 322 Vacuolar protein sorting-associated protein 4; AAA 85.43
2zan_A 444 Vacuolar protein sorting-associating protein 4B; S 85.24
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 83.26
1sxj_D 353 Activator 1 41 kDa subunit; clamp loader, processi 82.79
3u61_B 324 DNA polymerase accessory protein 44; AAA+, ATP hyd 82.5
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 80.81
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.2e-49  Score=330.49  Aligned_cols=162  Identities=40%  Similarity=0.651  Sum_probs=131.7

Q ss_pred             CCCCCCcccEEecCCcCcCCcchHHHHHHHHhcCCceeEEeC-CCCCCCcchHHHHHHHHhcCcEEEEeecCcccchhhH
Q 048215            1 SRSSTKKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDD-QLNRGYEISESLVKAIKASAISVIIFSEDYASSRWCL   79 (305)
Q Consensus         1 s~s~~~~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl   79 (305)
                      |+|.+++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|+|||
T Consensus         2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl   81 (176)
T 3jrn_A            2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL   81 (176)
T ss_dssp             -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred             CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence            688999999999999999999999999999999999999997 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccceE-----------EEEeCCCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccCCCCchhh
Q 048215           80 DELAEILECKKEHAQI-----------YVRNQTGSFGDSFSKLEERFEKNSEKLQTWRKGLREVAGLSGFHYRSIRPESE  148 (305)
Q Consensus        80 ~EL~~i~e~~~~~~~v-----------~Vr~q~g~f~~af~~~~~~~~~~~ekv~~Wr~aL~ev~~~~G~~~~~~~~e~~  148 (305)
                      +||++|++|++..+++           +||+|+|+||++|.+|+++  ..++++++|+.||+++++++||++.  .+|++
T Consensus        82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~  157 (176)
T 3jrn_A           82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSK  157 (176)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHH
T ss_pred             HHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHH
Confidence            9999999999876664           8999999999999999887  4567899999999999999999983  45999


Q ss_pred             hhhhhhhhhhhhcccccc
Q 048215          149 LINEVVNNILKRLLEEVF  166 (305)
Q Consensus       149 ~I~~Iv~~v~~~l~~~~~  166 (305)
                      +|++||++|+++|+++++
T Consensus       158 ~i~~Iv~~v~~~l~~~~~  175 (176)
T 3jrn_A          158 LVDKIANEISNKKTIYAT  175 (176)
T ss_dssp             HHHHHHHHHHTTCC----
T ss_pred             HHHHHHHHHHHHhcCCCC
Confidence            999999999999987764
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Back     alignment and structure
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Back     alignment and structure
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Back     alignment and structure
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Back     alignment and structure
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Back     alignment and structure
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Back     alignment and structure
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 305
d1fyva_161 c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H 1e-16
d1fyxa_149 c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H 3e-13
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 9e-07
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 6  KKYDVFVSFRGEDTLDDFTSHLYSALSRQNIQTFIDDQ-LNRGYEISESLVKAIKASAIS 64
           ++  F+S+ G D+     + L   L ++ +Q  + ++    G  I E+++  I+ S  S
Sbjct: 11 LQFHAFISYSGHDS-FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKS 69

Query: 65 VIIFSEDYASSRWCLDELAEILECKKE 91
          + + S ++  S WC  EL         
Sbjct: 70 IFVLSPNFVQSEWCHYELYFAHHNLFH 96
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149 Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 99.77
d1fyva_161 Toll-like receptor 1, TLR1 {Human (Homo sapiens) [ 99.66
d1fyxa_149 Toll-like receptor 2, TLR2 {Human (Homo sapiens) [ 99.59
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 94.88
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 92.84
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 90.57
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 90.21
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 89.99
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 88.18
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 87.86
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 87.39
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 86.63
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 85.49
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 83.44
d1qvra2 387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 83.43
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 81.11
d1fnna2 276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 80.79
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=7e-19  Score=155.25  Aligned_cols=121  Identities=17%  Similarity=0.161  Sum_probs=93.6

Q ss_pred             CCCCcccccchhhhHHHhhccCCC-C---ceEeCC-C-------cc--------cccccc--------------------
Q 048215          171 NKSQLVGVESRVEEIESLLSVESK-D---VYALGF-G-------AS--------VDENAI--------------------  210 (305)
Q Consensus       171 ~~~~~vG~~~~~~~l~~~L~~~~~-~---v~ivGi-G-------~~--------v~e~~~--------------------  210 (305)
                      ....++||+.++++|.++|....+ +   |.|+|| |       ..        +..+|+                    
T Consensus        18 ~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~   97 (277)
T d2a5yb3          18 KQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT   97 (277)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred             CCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHH
Confidence            345688999999999999875322 2   788899 6       11        111222                    


Q ss_pred             -------------------c------chhhhhhhhcCCceeEEeccCCCHHHHHHHHhcCCCCCCCcEEEEEcCChHHHH
Q 048215          211 -------------------P------GNDLNSRRLSCMKVLIVFDDVTCFSQLESIIGSLDWLMPVSRTIITTRNKQVLR  265 (305)
Q Consensus       211 -------------------~------~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIIiTTR~~~v~~  265 (305)
                                         .      ....+...|.++|+|+||||||+.++|+.+..      .|||||||||++.++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~~  171 (277)
T d2a5yb3          98 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISN  171 (277)
T ss_dssp             HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGGG
T ss_pred             HHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHHHH
Confidence                               0      12235677889999999999999999987753      5899999999999999


Q ss_pred             hcCCC-ceEEcCCCChHHHHHHHHHhhcCCCCC
Q 048215          266 NWGVR-KICEMEALEYHHALELFSRHAFKQNHP  297 (305)
Q Consensus       266 ~~~~~-~~~~v~~L~~~ea~~Lf~~~Af~~~~~  297 (305)
                      .+... +.|+|++|+.+|||+||+++||....+
T Consensus       172 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~  204 (277)
T d2a5yb3         172 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG  204 (277)
T ss_dssp             GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--
T ss_pred             hcCCCCceEECCCCCHHHHHHHHHHHhCCccCc
Confidence            87654 789999999999999999999987655
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure