Citrus Sinensis ID: 048242
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF1 | 569 | Acetate/butyrate--CoA lig | yes | no | 0.990 | 0.748 | 0.666 | 1e-178 | |
| F4HUK6 | 556 | Probable acyl-activating | no | no | 0.962 | 0.744 | 0.486 | 1e-112 | |
| Q9SEY5 | 603 | Probable acyl-activating | no | no | 0.986 | 0.703 | 0.488 | 1e-110 | |
| Q9FFE9 | 550 | Probable acyl-activating | no | no | 0.946 | 0.74 | 0.476 | 1e-105 | |
| Q9FFE6 | 552 | Probable acyl-activating | no | no | 0.930 | 0.724 | 0.449 | 1e-101 | |
| Q9SS01 | 580 | Benzoate--CoA ligase, per | no | no | 0.967 | 0.717 | 0.443 | 1e-101 | |
| Q9SS00 | 578 | Probable acyl-activating | no | no | 0.953 | 0.709 | 0.444 | 1e-101 | |
| Q9C8D4 | 572 | Butyrate--CoA ligase AAE1 | no | no | 0.965 | 0.725 | 0.449 | 2e-99 | |
| Q9LQS1 | 544 | Probable acyl-activating | no | no | 0.965 | 0.762 | 0.448 | 2e-98 | |
| Q9LPK7 | 549 | Probable acyl-activating | no | no | 0.927 | 0.726 | 0.428 | 3e-96 |
| >sp|Q8VZF1|AEE7_ARATH Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 623 bits (1607), Expect = e-178, Method: Compositional matrix adjust.
Identities = 284/426 (66%), Positives = 348/426 (81%)
Query: 5 NDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQ 64
DIDDLPK PAN+TALTPLWFL+RAA VHPTRKSV++ S+ YTW+QTY RCRRLASAL+
Sbjct: 7 RDIDDLPKIPANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALAD 66
Query: 65 LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVD 124
SIGPG+ V++++PN+PAMYE HFGVPM GAVLNC+N RLN VA +L H++++++ VD
Sbjct: 67 RSIGPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVD 126
Query: 125 QQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDP 184
Q++F LAE++L++ME K+ FK P+LIVIGD TC L ALSKG EYE L TGDP
Sbjct: 127 QEFFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDP 186
Query: 185 EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLP 244
+ W+PP DEWQSIALGYTSGTTA+PKGV++ HR AY+M+L+ L WGM++GAVYLWTLP
Sbjct: 187 NYPWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLP 246
Query: 245 IFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED 304
+FH NGWCF WSLA L GTS+ LRQ +AK +Y IA++ VT+FCAAP+VLN+IVNAP ED
Sbjct: 247 MFHCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAPKED 306
Query: 305 TILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPF 364
TILPLPH V+V T G+ PPP +L +M+QKGFRV H YGLSE GP+TVCAW P WDSLP
Sbjct: 307 TILPLPHTVHVMTAGAAPPPSVLFSMNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPP 366
Query: 365 EAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424
E QA+LNARQGV+ +E LDV+DT+T +P+PADGKT GE+V RGNMVMKGYLKNP+AN+
Sbjct: 367 ETQAKLNARQGVRYTGMEQLDVIDTQTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANK 426
Query: 425 EAFANG 430
E FA G
Sbjct: 427 ETFAGG 432
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Peroxisomal acetate/butyrate--CoA ligase that is probably involved in the activation of exogenous acetate for entry into the glyoxylate cycle. May play a role to prevent carbon loss from peroxisomes during lipid mobilization. In vitro, is active with both acetate and butyrate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 2 |
| >sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/419 (48%), Positives = 273/419 (65%), Gaps = 5/419 (1%)
Query: 12 KNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGT 71
K+PAN+ LTP+ FL+R+A V+ R S+VY S YTW+QT RC R+ASALSQL I G
Sbjct: 8 KSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGD 67
Query: 72 AVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALA 131
VSVL+PNVPAM E+HFGVPM GA+L +N R + VA++L H+ ++F D Q+ +A
Sbjct: 68 VVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIA 127
Query: 132 EEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPP 191
E A +I+ K + K P+L++I E ++ S+ + EYE ++ G +F P
Sbjct: 128 EGACEILSNKGD---KVPILVLI-PEPLTQSVSRKKRSEEMMEYEDVVAMGKSDFEVIRP 183
Query: 192 RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251
DE +I++ YTSGTT++PKGV+ SHR AYL SL VL M YLWT P+FH NGW
Sbjct: 184 TDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCNGW 243
Query: 252 CFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPH 311
C W + A+ GT++ LR +AKAI+ I++H VT+ AP +LN I+NAP E PLP
Sbjct: 244 CLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAP-ESEQKPLPG 302
Query: 312 VVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLN 371
V+ TG +PPP ++ M + GF + H YGL+E GP T+C W P WDSLP E QA++
Sbjct: 303 KVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMK 362
Query: 372 ARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
ARQGV + LE + V D T + +PADG T+GEVV RGN VM GYLKNP+A +EAF G
Sbjct: 363 ARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGG 421
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SEY5|AAE2_ARATH Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/432 (48%), Positives = 276/432 (63%), Gaps = 8/432 (1%)
Query: 2 EPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASA 61
E I+ L ++PANF+ L+P+ FLER+A V+ R S+V+ S +TW QTYQRC RLASA
Sbjct: 43 ESWRTIEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLASA 102
Query: 62 LSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121
L+ L I G V+ L+PNVPAM+E+HF VPM G +L +N RL+P ++++L H+EA ++
Sbjct: 103 LTNLGISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAKIL 162
Query: 122 FVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVT------EY 175
FVD Q +A AL ++ KS+ K L++I D E + S + EY
Sbjct: 163 FVDHQLLEIAHGALDLL-AKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDYEY 221
Query: 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKE 235
E LL++GD EF PR EW I++ YTSGTT+ PKGV+ SHR AYL SL V M
Sbjct: 222 ETLLKSGDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQMSV 281
Query: 236 GAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLN 295
VYLWT+P+FH NGWC W +AA GT++ LR+ S K I+K IA H VT+ AP VLN
Sbjct: 282 YPVYLWTVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTVLN 341
Query: 296 SIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAW 355
IVN + PLPH V + TGGSPP P IL M + GF V+H+YGL+E GP T C W
Sbjct: 342 MIVNYTVTEH-KPLPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHCVW 400
Query: 356 NPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKG 415
P WDSL E + +L ARQGV+ + LEGLDV D T + +P DG T+GEV+ RGN VM G
Sbjct: 401 KPEWDSLSLEERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVMSG 460
Query: 416 YLKNPKANEEAF 427
Y K+ +A +AF
Sbjct: 461 YFKDIEATRKAF 472
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 268/418 (64%), Gaps = 11/418 (2%)
Query: 15 ANFTALTPLWFLERAATVHPTRKSVVYESKH-YTWQQTYQRCRRLASALSQLSIGPGTAV 73
AN LTP+ FLERAATV+ S+VY S YTW++T RC R+AS+LS + IG V
Sbjct: 9 ANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDVV 68
Query: 74 SVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEE 133
SVLSPN PAMYE+ F VPM+GA+LN IN RL+ V+++L H E+ L+FVD LA E
Sbjct: 69 SVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDVFSVDLAVE 128
Query: 134 ALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA-LSKGVTEYEKLLETGDPEFAWKPPR 192
A+ +M PP+L+VI D+ + + A LSK Y+ L+E GDP F W P
Sbjct: 129 AVSMMTTD------PPILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDPGFKWIRPE 182
Query: 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC 252
EW + L YTSGTT+ PKGV+ HR ++MS++ ++ W + + VYLWTLPIFH NGW
Sbjct: 183 SEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLPIFHSNGWT 242
Query: 253 FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHV 312
W +AA+ GT+V LR+ A IY+ I +HGVT+ C AP+VLN +++A E PL H
Sbjct: 243 NPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLN-MLSATQESQ--PLNHP 299
Query: 313 VNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNA 372
VN+ T GSPPP +LL GF ++H YGL+E G CAW P W+ LP +ARL A
Sbjct: 300 VNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPASDRARLKA 359
Query: 373 RQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
RQGV+ + +DV+D ++ + +G+T+GE+VMRG+ VM GYLK+P E+A NG
Sbjct: 360 RQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKALKNG 417
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 263/425 (61%), Gaps = 25/425 (5%)
Query: 15 ANFTALTPLWFLERAATVHPTRKSVVYESKH-YTWQQTYQRCRRLASALSQLSIGPGTAV 73
AN LTP+ FLERAATV+ S+VY S YTW++T RC R+AS+LS + IG V
Sbjct: 9 ANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDVV 68
Query: 74 SVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEE 133
SVLSPN PAMYE+ F VPM+GA+LN IN RL+ V+++L H + L+FVD LA E
Sbjct: 69 SVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDVFSVDLAVE 128
Query: 134 ALKIMEGKSEGLFKPPVLIVIGD--------ETCDRAPLEYALSKGVTEYEKLLETGDPE 185
A+ +M PP+L+ I D + DR Y Y+ L+ GD +
Sbjct: 129 AISMMTTD------PPILVFIADKEEEGGDADVADRTKFSYT-------YDDLIHRGDLD 175
Query: 186 FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI 245
F W P EW + L YTSGTT+ PKGV+ HR ++MS++ ++ W + + VYLWTLPI
Sbjct: 176 FKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPI 235
Query: 246 FHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT 305
FH NGW + W +AA+ GT+V LR+ A IY+ I +HGVT+ C AP+VLN +++A E
Sbjct: 236 FHANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLN-MLSATNE-- 292
Query: 306 ILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFE 365
PL VN+ T G+PPP +LL GF ++H YGL+E G CAW P W+ LP
Sbjct: 293 FQPLNRPVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPAS 352
Query: 366 AQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
+ARL ARQGV+ + +DV+D ++ + + +G+T+GE+VMRG+ +M GYLK+P E+
Sbjct: 353 DRARLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEK 412
Query: 426 AFANG 430
A NG
Sbjct: 413 ALKNG 417
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SS01|AAE20_ARATH Benzoate--CoA ligase, peroxisomal OS=Arabidopsis thaliana GN=AAE20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/428 (44%), Positives = 265/428 (61%), Gaps = 12/428 (2%)
Query: 7 IDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLS 66
+DDL AN LTP+ FL+RA+ +P R S++Y +TW QTY RC RLA++L L+
Sbjct: 1 MDDLALCEANNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126
I VSV++PN PA+YE+HF VPM GAVLN IN RL+ ++A IL HA+ ++F+D+
Sbjct: 61 ISKNDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRS 120
Query: 127 YFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEF 186
+ ALA E+L ++ + L PV+ + ++ RA E +YE L++ G+P
Sbjct: 121 FEALARESLHLLSSEDSNL-NLPVIFIHENDFPKRASFEE------LDYECLIQRGEPTP 173
Query: 187 AWKPP----RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWT 242
+ +DE I+L YTSGTTA+PKGV++SHR AYL +L+ ++ W M VYLWT
Sbjct: 174 SMVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVYLWT 233
Query: 243 LPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP 302
LP+FH NGW FTW AA GTSV +R +A IYK I H VT+ C P V N ++
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 303 EDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSL 362
D + P V+V TGGSPPP ++ + + GF+V H YG +E GP C W W+ L
Sbjct: 294 LD-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGQTEATGPILFCEWQDEWNRL 352
Query: 363 PFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
P Q L ARQG+ + L +DV + +T + P DGKT+GE++++G+ +MKGYLKNPKA
Sbjct: 353 PENQQMELKARQGISILGLADVDVKNKETQKSAPRDGKTMGEILIKGSSIMKGYLKNPKA 412
Query: 423 NEEAFANG 430
EAF +G
Sbjct: 413 TFEAFKHG 420
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Benzoate--CoA ligase involved in benzoyloxyglucosinolate biosynthesis in seeds. Glucosinolates are secondary metabolites involved in pathogen and insect defense of cruciferous plants. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9SS00|AAE12_ARATH Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana GN=AAE12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/434 (44%), Positives = 264/434 (60%), Gaps = 24/434 (5%)
Query: 7 IDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLS 66
+D+L AN LTP+ FL+RA+ +P R S++Y +TW QTY RC RLA++L L+
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126
IG VSV++PN PAMYE+HF VPM GAVLN IN RL+ ++A IL HA+ ++F+ +
Sbjct: 61 IGKNDVVSVVAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFIYRS 120
Query: 127 YFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPE- 185
+ LA E L+++ + L P + I D +S ++YE L++ G+P
Sbjct: 121 FEPLAREILQLLSSEDSNLNLPVIFIHEID-------FPKRVSSEESDYECLIQRGEPTP 173
Query: 186 ------FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVY 239
F + DE I+L YTSGTTA+PKGV++SHR AYL +L+ ++ W M VY
Sbjct: 174 LLLARMFCIQ---DEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVY 230
Query: 240 LWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVN 299
LWTLP+FH NGW FTW AA GTSV +R +A IYK I H VT+ C P V N ++
Sbjct: 231 LWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLK 290
Query: 300 APPEDTILPLPHV---VNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWN 356
L L H V+V TGGSPPP ++ + + GF+V H YGL+E GP C W
Sbjct: 291 G----NSLDLSHRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQ 346
Query: 357 PNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGY 416
W+ LP Q L ARQG+ + L +DV + +T + +P DGKT+GE+VM+G+ +MKGY
Sbjct: 347 DEWNRLPENQQMELKARQGLSILGLTEVDVRNKETQESVPRDGKTMGEIVMKGSSIMKGY 406
Query: 417 LKNPKANEEAFANG 430
LKNPKA EAF +G
Sbjct: 407 LKNPKATYEAFKHG 420
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 193/429 (44%), Positives = 262/429 (61%), Gaps = 14/429 (3%)
Query: 7 IDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLS 66
+D+L AN LTP+ FL+RA+ +P R S++Y +TW QTY RC RLA++L L+
Sbjct: 1 MDNLVLCEANNVPLTPITFLKRASECYPNRTSIIYGQTRFTWPQTYDRCCRLAASLLSLN 60
Query: 67 IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126
I VS+L+PNVPAMYE+HF VPMTGAVLN IN RL+ +AIIL HAE ++FVD +
Sbjct: 61 ITRNDVVSILAPNVPAMYEMHFSVPMTGAVLNPINTRLDAKTIAIILRHAEPKILFVDYE 120
Query: 127 YFALAEEALKIMEGKSEGLFKP-PVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPE 185
+ L +E L+++ +P P +I+I + P L +YE L+ G+P
Sbjct: 121 FAPLIQEVLRLIPTYQS---QPHPRIILINEIDSTTKPFSKEL-----DYEGLIRKGEPT 172
Query: 186 FAWKPP----RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLW 241
+ +E I+L YTSGTTA+PKGV++SH+ AYL +L+ ++ W M VYLW
Sbjct: 173 PSSSASMFRVHNEHDPISLNYTSGTTADPKGVVISHQGAYLSALSSIIGWEMGIFPVYLW 232
Query: 242 TLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP 301
TLP+FH NGW TWS+AA GT+V +R +A IYK I HGVT+ P V ++
Sbjct: 233 TLPMFHCNGWTHTWSVAARGGTNVCIRHVTAPEIYKNIELHGVTHMSCVPTVFRFLLEGS 292
Query: 302 PEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDS 361
D P V V TGGS PP ++ + Q GF V H YGL+E GP C W W+
Sbjct: 293 RTDQ-SPKSSPVQVLTGGSSPPAVLIKKVEQLGFHVMHGYGLTEATGPVLFCEWQDEWNK 351
Query: 362 LPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPK 421
LP Q L RQGV+ + L +DV +TKT + +P DGKT+GE+V++G+ +MKGYLKNPK
Sbjct: 352 LPEHQQIELQQRQGVRNLTLADVDVKNTKTLESVPRDGKTMGEIVIKGSSLMKGYLKNPK 411
Query: 422 ANEEAFANG 430
A EAF +G
Sbjct: 412 ATSEAFKHG 420
|
Butyrate--CoA ligase that is active in vitro with medium-chain fatty acids, with a preference for hexanoate and octanoate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9LQS1|AAE8_ARATH Probable acyl-activating enzyme 8 OS=Arabidopsis thaliana GN=AAE8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 191/426 (44%), Positives = 263/426 (61%), Gaps = 11/426 (2%)
Query: 7 IDDLPKNPANFTALTPLWFLERAATVHPTRKSVVY-ESKHYTWQQTYQRCRRLASALSQL 65
++DL + AN LT L FLERAATV+ S+VY S YTW++T RC +ASALS +
Sbjct: 1 MEDLKPSAANSLPLTLLGFLERAATVYGDCTSIVYGNSTVYTWRETNHRCLCVASALSSI 60
Query: 66 SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125
IG VSVLS N P MYE+ F VPM+GA+LN IN RL+ V+++L H E+ L+FVD
Sbjct: 61 GIGRSDVVSVLSANTPEMYELQFSVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDF 120
Query: 126 QYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA-LSKGVTEYEKLLETGDP 184
Y LA EA+ + L PP+L++I +E + E SK Y L+ G+P
Sbjct: 121 FYSDLAVEAITM-------LLNPPILVLIANEEEEEGGAEVTERSKFCYLYSDLITRGNP 173
Query: 185 EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLP 244
+F W P EW I + YTSGTT++PKGV+ HR ++M+L+ + W + + VYLWTLP
Sbjct: 174 DFKWIRPGSEWDPIVVNYTSGTTSSPKGVVHCHRGIFVMTLDSLTDWAVPKTPVYLWTLP 233
Query: 245 IFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED 304
IFH NGW + W +AA+ GT+V +R+ A +IY I +HGVT+ APIVL + + D
Sbjct: 234 IFHANGWTYPWGIAAVGGTNVCVRKLHAPSIYHLIRDHGVTHMYGAPIVLQILSASQESD 293
Query: 305 TILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPF 364
PL VN T GS PP +LL GF V+H YGL+E G CAW PNW+ LP
Sbjct: 294 Q--PLKSPVNFLTAGSSPPATVLLRAESLGFIVSHGYGLTETAGVIVSCAWKPNWNRLPA 351
Query: 365 EAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424
QA+L +RQGV+ + +DV+D ++ + + DG+T+GE+V+RG+ +M GYLKNP +
Sbjct: 352 SDQAQLKSRQGVRTVGFSEIDVVDPESGRSVERDGETVGEIVLRGSSIMLGYLKNPIGTQ 411
Query: 425 EAFANG 430
+F NG
Sbjct: 412 NSFKNG 417
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LPK7|AEE10_ARATH Probable acyl-activating enzyme 10 OS=Arabidopsis thaliana GN=AEE10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 177/413 (42%), Positives = 264/413 (63%), Gaps = 14/413 (3%)
Query: 13 NPANFTALTPLWFLERAATVHPTRKSVVYESKH-YTWQQTYQRCRRLASALSQLSIG--P 69
+P+N T LT L FL+RAA+V+ S+++ + +TW +T+ RC R+ASAL+ SIG
Sbjct: 7 HPSNSTPLTVLGFLDRAASVYGDCPSILHTANTVHTWSETHNRCLRIASALTSSSIGIKQ 66
Query: 70 GTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA 129
G VSV+ PNVP++YE+ F VPM+GA+LN IN RL+ ++++L H+E+ LVFVD + +
Sbjct: 67 GQVVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESRLVFVDHRSIS 126
Query: 130 LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWK 189
L EA+ + KP ++++ D+ D + + S + YE+++E G+ F W
Sbjct: 127 LVLEAVSLFTQHE----KPHLVLLDDDQENDSS----SASDFLDTYEEIMERGNSRFKWI 178
Query: 190 PPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGN 249
P+ EWQ + L YTSGTT++PKGV++SHRA ++++++ +L W + VYLWTLP+FH N
Sbjct: 179 RPQTEWQPMVLNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWSVPNRPVYLWTLPMFHAN 238
Query: 250 GWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPL 309
GW +TW AA+ T++ R+ A IY I +H VT+ CAAP+VLN ++N P PL
Sbjct: 239 GWGYTWGTAAVGATNICTRRVDAPTIYNLIDKHNVTHMCAAPMVLNMLINYPLS---TPL 295
Query: 310 PHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQAR 369
+ V V T G+PPP I+ GF V+H YGL+E +GP CAW P WD L +AR
Sbjct: 296 KNPVQVMTSGAPPPATIISRAESLGFNVSHSYGLTETSGPVVSCAWKPKWDHLDPLERAR 355
Query: 370 LNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
L +RQGV+ + +DV D KT + + DG ++GE+V RG+ VM GY K+P+
Sbjct: 356 LKSRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQG 408
|
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 449432900 | 567 | PREDICTED: acetate/butyrate--CoA ligase | 1.0 | 0.758 | 0.704 | 0.0 | |
| 225431902 | 567 | PREDICTED: medium-chain-fatty-acid--CoA | 1.0 | 0.758 | 0.713 | 0.0 | |
| 147854579 | 567 | hypothetical protein VITISV_017128 [Viti | 1.0 | 0.758 | 0.711 | 0.0 | |
| 225431900 | 567 | PREDICTED: medium-chain-fatty-acid--CoA | 1.0 | 0.758 | 0.706 | 0.0 | |
| 357478905 | 566 | 2-succinylbenzoate-CoA ligase [Medicago | 0.997 | 0.757 | 0.690 | 0.0 | |
| 217074538 | 566 | unknown [Medicago truncatula] gi|3884930 | 0.997 | 0.757 | 0.688 | 0.0 | |
| 255556322 | 565 | AMP dependent ligase, putative [Ricinus | 0.988 | 0.752 | 0.701 | 0.0 | |
| 255556324 | 564 | AMP dependent ligase, putative [Ricinus | 0.988 | 0.753 | 0.697 | 0.0 | |
| 356521803 | 568 | PREDICTED: medium-chain-fatty-acid--CoA | 0.988 | 0.748 | 0.697 | 0.0 | |
| 224099191 | 566 | predicted protein [Populus trichocarpa] | 0.997 | 0.757 | 0.693 | 0.0 |
| >gi|449432900|ref|XP_004134236.1| PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like [Cucumis sativus] gi|449503854|ref|XP_004162208.1| PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/430 (70%), Positives = 364/430 (84%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLAS 60
M DIDDLPKN AN+TALTPLWF+ERAA VHP+R SVV+ S+ Y W+QTYQRCRRLAS
Sbjct: 1 MAGARDIDDLPKNHANYTALTPLWFIERAALVHPSRLSVVHGSRRYNWRQTYQRCRRLAS 60
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
ALS SIG G V++++PN+PA+YE HFGVPM GAVLNC+N RLN ++ +LGH+ +A+
Sbjct: 61 ALSNRSIGAGDTVAIIAPNIPAIYEAHFGVPMAGAVLNCVNIRLNAQTISFLLGHSASAV 120
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
V VDQ++F LAEEAL I+ K +G +KPP+LIVIGDE CD L+YALSKG EYEK LE
Sbjct: 121 VMVDQEFFPLAEEALNILAAKGDGHYKPPLLIVIGDENCDPEALKYALSKGAIEYEKFLE 180
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
G+PE+AWKPP DEWQSI LGYTSGTTA+PKGV++SHR AY+MSL+ L WGM EGA+YL
Sbjct: 181 IGNPEYAWKPPEDEWQSITLGYTSGTTASPKGVVLSHRGAYVMSLSAGLVWGMNEGAIYL 240
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
WTLP+FH NGWC+TW+LAALCGTS+ LRQ +AKA+Y AIA+H VT+FCAAP+VLN+IVNA
Sbjct: 241 WTLPMFHCNGWCYTWALAALCGTSICLRQVTAKAVYSAIAKHKVTHFCAAPVVLNTIVNA 300
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360
P EDTILPLPHVV+V T G+ PPP +L AMSQKGFR+TH YGLSE GP+T+CAW P WD
Sbjct: 301 PKEDTILPLPHVVHVMTAGAAPPPSVLYAMSQKGFRITHTYGLSETYGPSTICAWKPEWD 360
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
SLP EAQAR+NARQGV+ + LEGLDV++T+T QP+P+DGKT+GE+VMRGN VMKGYLKNP
Sbjct: 361 SLPPEAQARMNARQGVRYVGLEGLDVVNTQTMQPVPSDGKTVGEIVMRGNAVMKGYLKNP 420
Query: 421 KANEEAFANG 430
KAN+EAFANG
Sbjct: 421 KANKEAFANG 430
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431902|ref|XP_002276533.1| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/430 (71%), Positives = 358/430 (83%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLAS 60
M + DIDDLPKN AN+TALTPLWFLERAA VHP RKSV++ S YTW QTYQRCRRLAS
Sbjct: 1 MVVERDIDDLPKNAANYTALTPLWFLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLAS 60
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
ALS+ SIG G+ V++++PN+PAMYE HFGVPM+GAV+NC+N RLN +A +L H+ AA+
Sbjct: 61 ALSKYSIGAGSTVAIIAPNIPAMYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAV 120
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
V VDQ++F LAEEALKI GKS+ FKPP+LIVI DE+CD LEYAL KGV EYE+ LE
Sbjct: 121 VMVDQEFFPLAEEALKIWSGKSKNDFKPPLLIVIADESCDPKGLEYALRKGVIEYEQFLE 180
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
TGDPEFAWKPP+DEWQSIALGYTSGTTA+PKGV++ HR AY+M+L+ L WGM EGAVYL
Sbjct: 181 TGDPEFAWKPPQDEWQSIALGYTSGTTASPKGVVLHHRGAYVMALSGALVWGMNEGAVYL 240
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
WTLP+FH NGWCFTW+LAALCGT++ LRQ + KAIY+AIA GVT+ CAAP+VLNSIVNA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVATKAIYQAIANDGVTHLCAAPVVLNSIVNA 300
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360
P +TILPLP VV+V T G+ PPP +L AMSQ+GFRVTH YGLSE GP+TVCAW P WD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
LP E QARLNARQGV+ + LEGLDV+ T +P+PADG TIGE+VMRGN VMKGYLKNP
Sbjct: 361 ELPPETQARLNARQGVRYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNP 420
Query: 421 KANEEAFANG 430
KANEE FANG
Sbjct: 421 KANEETFANG 430
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147854579|emb|CAN82780.1| hypothetical protein VITISV_017128 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/430 (71%), Positives = 355/430 (82%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLAS 60
M + DIDDLPKN AN+TALTPLW LERAA VHP RKSV++ S YTW QTYQRCRRLAS
Sbjct: 1 MVVERDIDDLPKNAANYTALTPLWLLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLAS 60
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
ALS+ SIG G+ V++++PN+PAMYE HFGVPM+GAV+NC+N RLN +A +L H+ AA+
Sbjct: 61 ALSKYSIGAGSTVAIIAPNIPAMYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAV 120
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
V VDQ++F LAEEALKI GKS+ FKPP+LIVI DE+CD LEYAL KGV EYE+ LE
Sbjct: 121 VMVDQEFFPLAEEALKIWSGKSKNDFKPPLLIVIADESCDPKGLEYALRKGVIEYEQFLE 180
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
TGDPEFAWKPP+DEWQSIALGYTSGTTA+PKGV++ HR AY+M+L L WGM EGAVYL
Sbjct: 181 TGDPEFAWKPPQDEWQSIALGYTSGTTASPKGVVLHHRGAYIMALTGALVWGMNEGAVYL 240
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
WTLP+FH NGWCFTW+LAALCGT++ LRQ + KAIY+AIA GVT+ CAAP+VLNSIVNA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVATKAIYQAIANDGVTHLCAAPVVLNSIVNA 300
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360
P +TILPLP VV+V T G+ PPP +L AMSQ+GFRVTH YGLSE GP+TVCAW P WD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
LP E QARLNARQGV + LEGLDV+ T +P+PADG TIGE+VMRGN VMKGYLKNP
Sbjct: 361 ELPPETQARLNARQGVXYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNP 420
Query: 421 KANEEAFANG 430
KANEE FANG
Sbjct: 421 KANEETFANG 430
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431900|ref|XP_002276434.1| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/430 (70%), Positives = 353/430 (82%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLAS 60
M + DIDDLPKN AN+TALTPLW LERAA VHP RKSV++ S YTW QTYQRCRRLAS
Sbjct: 1 MVVERDIDDLPKNAANYTALTPLWLLERAAVVHPNRKSVIHGSLQYTWLQTYQRCRRLAS 60
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
ALS+ SIG G+ V++++PN+PA YE HFGVPM+GAV+NC+N RLN +A +L H+ AA+
Sbjct: 61 ALSKYSIGAGSTVAIIAPNIPAKYEAHFGVPMSGAVVNCVNIRLNAPTIAFLLEHSSAAV 120
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
V VDQ++F LAEEALKI KS+ FKPP+LIVI DE+CD LEYAL KGV EYE+ LE
Sbjct: 121 VMVDQEFFPLAEEALKIWSDKSKNDFKPPLLIVIADESCDPKALEYALRKGVIEYEQFLE 180
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
TGDPEFAWKPP+DEWQSIALGYTSGTTA+PKGV++ HR AY+M+L L WGM EGAVYL
Sbjct: 181 TGDPEFAWKPPQDEWQSIALGYTSGTTASPKGVVLHHRGAYIMALTGALVWGMNEGAVYL 240
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
WTLP+FH NGWCFTW+LAALCGT++ LRQ KAIY+AIA GVT+ CAAP+VLNSIVNA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVETKAIYQAIANDGVTHLCAAPVVLNSIVNA 300
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360
P +TILPLP VV+V T G+ PPP +L AMSQ+GFRVTH YGLSE GP+TVCAW P WD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSQQGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
LP E QARLNARQGV+ + LEGLDV+ T +P+PADG TIGE+VMRGN VMKGYLKNP
Sbjct: 361 ELPPETQARLNARQGVQYIGLEGLDVVSTTDMKPVPADGTTIGEIVMRGNTVMKGYLKNP 420
Query: 421 KANEEAFANG 430
KANEE FANG
Sbjct: 421 KANEETFANG 430
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478905|ref|XP_003609738.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] gi|355510793|gb|AES91935.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/430 (69%), Positives = 358/430 (83%), Gaps = 1/430 (0%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLAS 60
M + DIDDLPKN AN+T+LTPLWFLERAA VHPTRKS+++ S+HYTW+QTYQRCRR AS
Sbjct: 1 MGTKQDIDDLPKNAANYTSLTPLWFLERAAQVHPTRKSIIHGSRHYTWRQTYQRCRRFAS 60
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
ALS SI G V+V++PN+PA+YE HFG+PM GAV+N +N RLN +A +LGH A++
Sbjct: 61 ALSNRSIALGNTVAVIAPNIPALYEAHFGIPMAGAVINPVNIRLNASTIAFLLGHCTASV 120
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
V VDQ++F+LAEEALKI K++ FK P+LIVIGDE CD L YALSKG EYE L
Sbjct: 121 VIVDQEFFSLAEEALKIWSDKTK-TFKSPILIVIGDENCDPKSLRYALSKGAVEYEDFLR 179
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
+GDPE+ WKPP DEWQSIALGYTSGTTA+PKGV++ HR AYLMSL+ L WGM EGAVYL
Sbjct: 180 SGDPEYNWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMNEGAVYL 239
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
WTLP+FH NGWC+TW+LAAL GT++ LRQ SAKA+Y+AI ++ VT+FCAAP+VLNSI+NA
Sbjct: 240 WTLPMFHCNGWCYTWTLAALFGTNICLRQVSAKAVYEAIVKYKVTHFCAAPVVLNSIINA 299
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360
P E+TILPLPHVV+VNT G+ PPP +L MS++GFRVTH YGLSE GP+ CAW P WD
Sbjct: 300 PAEETILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWD 359
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
SLP E++ARL+ARQGVK + LEGLDV++TKT QP+PADGKT+GE+VMRGN VMKGYLKNP
Sbjct: 360 SLPPESRARLHARQGVKYIALEGLDVVNTKTMQPVPADGKTVGEIVMRGNAVMKGYLKNP 419
Query: 421 KANEEAFANG 430
KANEE+FANG
Sbjct: 420 KANEESFANG 429
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217074538|gb|ACJ85629.1| unknown [Medicago truncatula] gi|388493070|gb|AFK34601.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/430 (68%), Positives = 357/430 (83%), Gaps = 1/430 (0%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLAS 60
M + DIDDLPKN AN+T+LTPLWFLERAA VHPTRKS+++ S+HYTW+QTYQRCRR AS
Sbjct: 1 MGTKQDIDDLPKNAANYTSLTPLWFLERAAQVHPTRKSIIHGSRHYTWRQTYQRCRRFAS 60
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
ALS SI G V+V++PN+PA+YE HFG+PM GAV+N +N RLN +A +LGH A++
Sbjct: 61 ALSNRSIALGNTVAVIAPNIPALYEAHFGIPMAGAVINPVNIRLNASTIAFLLGHCTASV 120
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
V VDQ++F+LAEEALKI K++ FK P+LIVIGDE CD L YALSKG EYE L
Sbjct: 121 VIVDQEFFSLAEEALKIWSDKTK-TFKSPILIVIGDENCDPKSLRYALSKGAVEYEDFLR 179
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
+GDPE+ WKPP DEWQSIALGYTSGTTA+PKGV++ HR AYLMSL+ L WGM EGAVYL
Sbjct: 180 SGDPEYNWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMNEGAVYL 239
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
WTLP+FH NGWC+TW+LAAL GT++ LRQ SAKA+Y+AI ++ VT+FCAAP+VLNSI+NA
Sbjct: 240 WTLPMFHCNGWCYTWTLAALFGTNICLRQVSAKAVYEAIVKYKVTHFCAAPVVLNSIINA 299
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360
P E+TILPLPHVV+VNT G+ PPP +L MS++GFRVTH YGLSE GP+ CAW P WD
Sbjct: 300 PAEETILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWD 359
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
LP E++ARL+ARQGVK + LEGLDV++TKT QP+PADGKT+GE+VMRGN VMKGYLKNP
Sbjct: 360 PLPPESRARLHARQGVKYIALEGLDVVNTKTMQPVPADGKTVGEIVMRGNAVMKGYLKNP 419
Query: 421 KANEEAFANG 430
KANEE+FANG
Sbjct: 420 KANEESFANG 429
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556322|ref|XP_002519195.1| AMP dependent ligase, putative [Ricinus communis] gi|223541510|gb|EEF43059.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/426 (70%), Positives = 360/426 (84%), Gaps = 1/426 (0%)
Query: 5 NDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQ 64
DID+LPKN AN+TALTPL FL+RAATVHP+R S+V+ S HYTW QTY+RCRRLASAL+
Sbjct: 4 KDIDELPKNAANYTALTPLLFLDRAATVHPSRVSLVHGSTHYTWLQTYKRCRRLASALTN 63
Query: 65 LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVD 124
S+G G+ V++++PNVPAMYE HFGVPM GAV+NC+N RLN VA +LGH+++ +V VD
Sbjct: 64 HSVGFGSTVAIIAPNVPAMYEAHFGVPMAGAVVNCVNIRLNASTVAFLLGHSKSEVVMVD 123
Query: 125 QQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDP 184
Q++F+LAEEAL+I+ KSE FKP +LIVI D++CD L++AL +G EYEK LE+GDP
Sbjct: 124 QEFFSLAEEALEIL-AKSESSFKPALLIVIADKSCDPKSLKHALGRGAIEYEKFLESGDP 182
Query: 185 EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLP 244
EFAWK P DEWQSIALGYTSGTTA+PKGV++SHR AYLMSL+ L WGM EGAVYLWTLP
Sbjct: 183 EFAWKQPEDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSNPLIWGMNEGAVYLWTLP 242
Query: 245 IFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED 304
+FH NGWCFTWSLAALCGT++ LRQ +AKA+Y AIA +GV++FC AP+VLN+IVNAP E+
Sbjct: 243 MFHCNGWCFTWSLAALCGTNICLRQVTAKAVYSAIANNGVSHFCGAPVVLNTIVNAPKEE 302
Query: 305 TILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPF 364
TILPLP +V+V T G+ PPP +L AMS+KGFRVTH YGLSE GP+TVCAW P WDS P
Sbjct: 303 TILPLPRIVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSQPP 362
Query: 365 EAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424
QARLNARQGV+ + LEGLDV+D KT +P+PADGKTIGE+VMRGN+VMKGYLKNPKANE
Sbjct: 363 IVQARLNARQGVRYIGLEGLDVVDPKTMKPVPADGKTIGEIVMRGNIVMKGYLKNPKANE 422
Query: 425 EAFANG 430
EAFANG
Sbjct: 423 EAFANG 428
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556324|ref|XP_002519196.1| AMP dependent ligase, putative [Ricinus communis] gi|223541511|gb|EEF43060.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/426 (69%), Positives = 356/426 (83%), Gaps = 1/426 (0%)
Query: 5 NDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQ 64
DIDDLPK AN+TALTPLWFLERAATVHPTR +VV+ S+ Y+W QTY RCRRLASAL+
Sbjct: 3 KDIDDLPKLQANYTALTPLWFLERAATVHPTRTAVVHGSERYSWLQTYHRCRRLASALNN 62
Query: 65 LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVD 124
+IG G+ V+V++PN+PA+YE HFGVPM GAVLN +N RL+ +A +LGH+ + +V VD
Sbjct: 63 RNIGAGSTVAVIAPNIPALYEAHFGVPMAGAVLNTVNIRLDAPTIAFLLGHSRSTVVMVD 122
Query: 125 QQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDP 184
Q+YF LAE A KI+ K E F PP+LIVI DE+CD L++AL +G EYEK LE GDP
Sbjct: 123 QEYFHLAEGAFKILAEK-ENNFSPPLLIVIADESCDPKQLQHALKRGAIEYEKFLENGDP 181
Query: 185 EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLP 244
EFAWKPP DEWQSIALGYTSGTTA+PKGV++SHR AYLM+L+ + WG+ EGAVYLWTLP
Sbjct: 182 EFAWKPPEDEWQSIALGYTSGTTASPKGVVLSHRGAYLMALSCAMIWGLNEGAVYLWTLP 241
Query: 245 IFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED 304
+FH NGWC+TWSLAALCGT++ LRQ +AKA+Y AIA GVT+FCAAP+VLN+IVNAP E+
Sbjct: 242 MFHCNGWCYTWSLAALCGTNICLRQVTAKAVYSAIANQGVTHFCAAPVVLNTIVNAPKEE 301
Query: 305 TILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPF 364
ILPLP VV+VNT G+ PPP +L AMS+KGFRVTH YGLSE GP+TVCAW P WDSLP
Sbjct: 302 AILPLPRVVHVNTAGAAPPPSLLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPP 361
Query: 365 EAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424
QARLNARQGV+ + LEGLDV+DTKTN+P+PADGKT+GE+VMRGN+VMKGYLKNP+AN+
Sbjct: 362 IKQARLNARQGVRYIGLEGLDVVDTKTNKPVPADGKTMGEIVMRGNLVMKGYLKNPEANK 421
Query: 425 EAFANG 430
EAFANG
Sbjct: 422 EAFANG 427
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521803|ref|XP_003529540.1| PREDICTED: medium-chain-fatty-acid--CoA ligase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/426 (69%), Positives = 354/426 (83%), Gaps = 1/426 (0%)
Query: 5 NDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQ 64
DIDDLPKN AN+TALTPLWFLERAATVHPTR S+++ S+ YTWQQTY RCRR ASALS
Sbjct: 7 RDIDDLPKNAANYTALTPLWFLERAATVHPTRNSLIHGSRRYTWQQTYHRCRRFASALSN 66
Query: 65 LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVD 124
SIG G V+V++PN+PA+YE HFG+PM+GAVLN +N RLN VA +LGH AA V VD
Sbjct: 67 HSIGLGNTVAVIAPNIPALYEAHFGIPMSGAVLNPVNIRLNASTVAFLLGHCTAAAVIVD 126
Query: 125 QQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDP 184
Q++F+LAEEALKI K++ F PP+LIVI DE CD L+YAL KG EYE L++GDP
Sbjct: 127 QEFFSLAEEALKIWSEKAK-TFSPPLLIVISDENCDPKALKYALGKGAIEYEDFLQSGDP 185
Query: 185 EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLP 244
E+AWKPP DEWQSIALGYTSGTTA+PKGV++ HR AYLMSL+ L WGM EGAVYLWTLP
Sbjct: 186 EYAWKPPEDEWQSIALGYTSGTTASPKGVVLHHRGAYLMSLSGALIWGMTEGAVYLWTLP 245
Query: 245 IFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED 304
+FH NGWC+TW+LAALCGT++ LRQ +AKA+Y AIA++ VT+FCAAP+VLN+++NAP ED
Sbjct: 246 MFHCNGWCYTWTLAALCGTNICLRQVTAKAVYGAIAKYKVTHFCAAPVVLNTLINAPAED 305
Query: 305 TILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPF 364
TILPLPHVV+VNT G+ PPP +L MS++GFRVTH YGLSE GP+ CAW P W+SLP
Sbjct: 306 TILPLPHVVHVNTAGAAPPPSVLSGMSERGFRVTHTYGLSETYGPSVYCAWKPEWESLPP 365
Query: 365 EAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424
E QARLNARQGV+ + LEGL V++TKT +P+PADGKT+GE+VMRGN VMKGYLKNPKANE
Sbjct: 366 ENQARLNARQGVRYIGLEGLAVVNTKTMEPVPADGKTVGEIVMRGNSVMKGYLKNPKANE 425
Query: 425 EAFANG 430
E FANG
Sbjct: 426 ETFANG 431
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099191|ref|XP_002311397.1| predicted protein [Populus trichocarpa] gi|222851217|gb|EEE88764.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/430 (69%), Positives = 357/430 (83%), Gaps = 1/430 (0%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLAS 60
M DIDDLPKNPAN+ +LTPLWFLERAATVHPTR S+V+ES YTWQ+TYQRC R AS
Sbjct: 1 MGKTRDIDDLPKNPANYMSLTPLWFLERAATVHPTRTSIVHESVQYTWQETYQRCCRFAS 60
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
ALS S+G G V+V++PNVPA+YE HFGVPM GAV+NC+N RLN +A +LGH+++ +
Sbjct: 61 ALSNRSLGLGRTVAVIAPNVPALYEAHFGVPMAGAVVNCVNIRLNAQAIAFLLGHSKSEV 120
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
V VDQ++F L EEALKI EG +E FKPP+L+VIGD++CD LEYAL +G EYEK LE
Sbjct: 121 VMVDQEFFTLVEEALKIWEG-NEKNFKPPLLVVIGDKSCDPKSLEYALGRGAIEYEKFLE 179
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
+GDPEF WKPP DEWQSIALGYTSGTT++PKGV++SHR AYLM L+ + WGM EGA+YL
Sbjct: 180 SGDPEFDWKPPEDEWQSIALGYTSGTTSSPKGVVLSHRGAYLMCLSNPVIWGMDEGAIYL 239
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
WTLP+FH NGWCFTW+LAALC S+ LRQ +AKAIY AIA GV++FCAAP+VLN+I+NA
Sbjct: 240 WTLPMFHCNGWCFTWTLAALCVKSICLRQVTAKAIYSAIAYAGVSHFCAAPVVLNTIINA 299
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360
E+TILPLP +V+V T G+ PPP +L +MS+KGFRVTH YGLSE GP+TVCAW P WD
Sbjct: 300 SKEETILPLPRLVHVMTAGAAPPPSVLFSMSEKGFRVTHTYGLSETYGPSTVCAWKPEWD 359
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
SLP QARLNARQGV+ + LE LDV+DTKT +P+PADGKT+GE+VMRGN+VMKGYLKNP
Sbjct: 360 SLPPIKQARLNARQGVRYVGLERLDVVDTKTMKPVPADGKTMGEIVMRGNVVMKGYLKNP 419
Query: 421 KANEEAFANG 430
KANEEAFANG
Sbjct: 420 KANEEAFANG 429
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| TAIR|locus:2086122 | 569 | AAE7 "acyl-activating enzyme 7 | 0.988 | 0.746 | 0.668 | 7.1e-164 | |
| TIGR_CMR|SPO_0677 | 542 | SPO_0677 "AMP-binding protein" | 0.944 | 0.749 | 0.503 | 4.8e-110 | |
| TAIR|locus:2030407 | 556 | AAE1 "acyl activating enzyme 1 | 0.962 | 0.744 | 0.486 | 8.6e-104 | |
| TAIR|locus:2057249 | 603 | AT2G17650 [Arabidopsis thalian | 0.986 | 0.703 | 0.490 | 2.9e-103 | |
| UNIPROTKB|Q47WB3 | 541 | CPS_4259 "AMP-binding protein" | 0.948 | 0.754 | 0.465 | 2.4e-99 | |
| TIGR_CMR|CPS_4259 | 541 | CPS_4259 "AMP-binding protein" | 0.948 | 0.754 | 0.465 | 2.4e-99 | |
| TAIR|locus:2171357 | 550 | AT5G16340 [Arabidopsis thalian | 0.965 | 0.754 | 0.467 | 3.1e-99 | |
| TAIR|locus:2009774 | 580 | BZO1 "benzoyloxyglucosinolate | 0.967 | 0.717 | 0.443 | 4.2e-95 | |
| TAIR|locus:2171402 | 552 | AAE5 "acyl activating enzyme 5 | 0.946 | 0.737 | 0.454 | 4.2e-95 | |
| TAIR|locus:2009714 | 578 | AAE12 "acyl activating enzyme | 0.967 | 0.719 | 0.441 | 4.8e-94 |
| TAIR|locus:2086122 AAE7 "acyl-activating enzyme 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
Identities = 284/425 (66%), Positives = 348/425 (81%)
Query: 6 DIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQL 65
DIDDLPK PAN+TALTPLWFL+RAA VHPTRKSV++ S+ YTW+QTY RCRRLASAL+
Sbjct: 8 DIDDLPKIPANYTALTPLWFLDRAAVVHPTRKSVIHGSREYTWRQTYDRCRRLASALADR 67
Query: 66 SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125
SIGPG+ V++++PN+PAMYE HFGVPM GAVLNC+N RLN VA +L H++++++ VDQ
Sbjct: 68 SIGPGSTVAIIAPNIPAMYEAHFGVPMCGAVLNCVNIRLNAPTVAFLLSHSQSSVIMVDQ 127
Query: 126 QYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPE 185
++F LAE++L++ME K+ FK P+LIVIGD TC L ALSKG EYE L TGDP
Sbjct: 128 EFFTLAEDSLRLMEEKAGSSFKRPLLIVIGDHTCAPESLNRALSKGAIEYEDFLATGDPN 187
Query: 186 FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI 245
+ W+PP DEWQSIALGYTSGTTA+PKGV++ HR AY+M+L+ L WGM++GAVYLWTLP+
Sbjct: 188 YPWQPPADEWQSIALGYTSGTTASPKGVVLHHRGAYIMALSNPLIWGMQDGAVYLWTLPM 247
Query: 246 FHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT 305
FH NGWCF WSLA L GTS+ LRQ +AK +Y IA++ VT+FCAAP+VLN+IVNAP EDT
Sbjct: 248 FHCNGWCFPWSLAVLSGTSICLRQVTAKEVYSMIAKYKVTHFCAAPVVLNAIVNAPKEDT 307
Query: 306 ILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFE 365
ILPLPH V+V T G+ PPP +L +M+QKGFRV H YGLSE GP+TVCAW P WDSLP E
Sbjct: 308 ILPLPHTVHVMTAGAAPPPSVLFSMNQKGFRVAHTYGLSETYGPSTVCAWKPEWDSLPPE 367
Query: 366 AQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
QA+LNARQGV+ +E LDV+DT+T +P+PADGKT GE+V RGNMVMKGYLKNP+AN+E
Sbjct: 368 TQAKLNARQGVRYTGMEQLDVIDTQTGKPVPADGKTAGEIVFRGNMVMKGYLKNPEANKE 427
Query: 426 AFANG 430
FA G
Sbjct: 428 TFAGG 432
|
|
| TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
Identities = 213/423 (50%), Positives = 275/423 (65%)
Query: 10 LPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGP 69
L + PANFT L+PL ++ER A V+P SVVY + YTW +TY RCRRLASAL+ +G
Sbjct: 11 LDRTPANFTPLSPLSYIERTAAVYPDYPSVVYGDRRYTWAETYTRCRRLASALAGRGLGK 70
Query: 70 GTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA 129
G VS+++ N+P MYE HFGVPM GAVLN IN RL+ +A IL HAEA ++ VD ++
Sbjct: 71 GDTVSIIAANIPEMYEAHFGVPMAGAVLNAINTRLDAPIIAFILSHAEARVLIVDPEFSE 130
Query: 130 LAEEALKIMEGKSEGLFKPPVLIV-IGDET-CDRAPLEYALSKGVTEYEKLLETGDPEFA 187
+ +AL ++ +P +L+V I D + AP+ G Y+ LL GDP+F
Sbjct: 131 VVRDALAQID-------RPDLLVVDIEDPSFAGGAPV------GTLSYDALLAEGDPDFD 177
Query: 188 WKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFH 247
W P DEW +IAL YTSGTT NPKGV+ HR A L + + +LTWGM + AVYLWTLP+FH
Sbjct: 178 WSLPGDEWDAIALNYTSGTTGNPKGVVYHHRGAALNATSNILTWGMPQHAVYLWTLPMFH 237
Query: 248 GNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL 307
NGWCF W++AA G SV LR + IY+A E VT+FC APIVLN + NAP D +
Sbjct: 238 CNGWCFPWTMAANAGVSVCLRAVRDEPIYRAFREEKVTHFCGAPIVLNMLANAP--DHMK 295
Query: 308 PLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQ 367
H + V T G+PPP ++ M G VTHVYGL+E GP+ VCAW WD P +
Sbjct: 296 DFDHQIKVMTAGAPPPAAVIEKMEAMGVDVTHVYGLTETYGPSVVCAWKEEWDGRPGAER 355
Query: 368 ARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
A L RQGV+ + L GL V D +T +P+PADG+T+GE+ M+GN+VMKGYLKNP A + AF
Sbjct: 356 AALKVRQGVRYVALSGLMVADPETLEPVPADGETMGEIFMQGNIVMKGYLKNPDATDRAF 415
Query: 428 ANG 430
G
Sbjct: 416 RGG 418
|
|
| TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 204/419 (48%), Positives = 273/419 (65%)
Query: 12 KNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGT 71
K+PAN+ LTP+ FL+R+A V+ R S+VY S YTW+QT RC R+ASALSQL I G
Sbjct: 8 KSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYTWRQTRDRCVRIASALSQLGISTGD 67
Query: 72 AVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALA 131
VSVL+PNVPAM E+HFGVPM GA+L +N R + VA++L H+ ++F D Q+ +A
Sbjct: 68 VVSVLAPNVPAMVELHFGVPMAGALLCTLNIRHDSSLVAVLLRHSGTKVIFADHQFLQIA 127
Query: 132 EEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPP 191
E A +I+ K + K P+L++I E ++ S+ + EYE ++ G +F P
Sbjct: 128 EGACEILSNKGD---KVPILVLI-PEPLTQSVSRKKRSEEMMEYEDVVAMGKSDFEVIRP 183
Query: 192 RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251
DE +I++ YTSGTT++PKGV+ SHR AYL SL VL M YLWT P+FH NGW
Sbjct: 184 TDECDAISVNYTSGTTSSPKGVVYSHRGAYLNSLAAVLLNEMHSSPTYLWTNPMFHCNGW 243
Query: 252 CFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPH 311
C W + A+ GT++ LR +AKAI+ I++H VT+ AP +LN I+NAP E PLP
Sbjct: 244 CLLWGVTAIGGTNICLRNVTAKAIFDNISQHKVTHMGGAPTILNMIINAP-ESEQKPLPG 302
Query: 312 VVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLN 371
V+ TG +PPP ++ M + GF + H YGL+E GP T+C W P WDSLP E QA++
Sbjct: 303 KVSFITGAAPPPAHVIFKMEELGFSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMK 362
Query: 372 ARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
ARQGV + LE + V D T + +PADG T+GEVV RGN VM GYLKNP+A +EAF G
Sbjct: 363 ARQGVNHLGLEEIQVKDPVTMRTLPADGVTMGEVVFRGNTVMNGYLKNPEATKEAFKGG 421
|
|
| TAIR|locus:2057249 AT2G17650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 213/434 (49%), Positives = 279/434 (64%)
Query: 2 EPQN--DIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLA 59
EP++ I+ L ++PANF+ L+P+ FLER+A V+ R S+V+ S +TW QTYQRC RLA
Sbjct: 41 EPESWRTIEGLLRSPANFSPLSPITFLERSAKVYRDRTSLVFGSVKHTWFQTYQRCLRLA 100
Query: 60 SALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAA 119
SAL+ L I G V+ L+PNVPAM+E+HF VPM G +L +N RL+P ++++L H+EA
Sbjct: 101 SALTNLGISRGDVVAALAPNVPAMHELHFAVPMAGLILCPLNTRLDPSTLSVLLAHSEAK 160
Query: 120 LVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIG----DETCDRAPLEYALSKGVT-- 173
++FVD Q +A AL ++ KS+ K L++I D+ D SK
Sbjct: 161 ILFVDHQLLEIAHGALDLL-AKSDKTRKSLKLVLISQSNDDDDSDEDSSSTFASKYSFDY 219
Query: 174 EYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGM 233
EYE LL++GD EF PR EW I++ YTSGTT+ PKGV+ SHR AYL SL V M
Sbjct: 220 EYETLLKSGDSEFEIIKPRCEWDPISINYTSGTTSRPKGVVYSHRGAYLNSLATVFLHQM 279
Query: 234 KEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIV 293
VYLWT+P+FH NGWC W +AA GT++ LR+ S K I+K IA H VT+ AP V
Sbjct: 280 SVYPVYLWTVPMFHCNGWCLVWGVAAQGGTNICLRKVSPKMIFKNIAMHKVTHMGGAPTV 339
Query: 294 LNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVC 353
LN IVN + PLPH V + TGGSPP P IL M + GF V+H+YGL+E GP T C
Sbjct: 340 LNMIVNYTVTEH-KPLPHRVEIMTGGSPPLPQILAKMEELGFNVSHLYGLTETYGPGTHC 398
Query: 354 AWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413
W P WDSL E + +L ARQGV+ + LEGLDV D T + +P DG T+GEV+ RGN VM
Sbjct: 399 VWKPEWDSLSLEERTKLKARQGVQHLGLEGLDVKDPLTMETVPDDGLTMGEVMFRGNTVM 458
Query: 414 KGYLKNPKANEEAF 427
GY K+ +A +AF
Sbjct: 459 SGYFKDIEATRKAF 472
|
|
| UNIPROTKB|Q47WB3 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 196/421 (46%), Positives = 271/421 (64%)
Query: 10 LPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGP 69
L N AN+ ALTP+ FLERAA V+P + + V +TW + +QRC R ASAL++ IG
Sbjct: 11 LEPNEANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGR 70
Query: 70 GTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA 129
G VSV++PN+ +EVHFGVPM+GAVLN IN RL+ +A IL HAE ++ D+++
Sbjct: 71 GDTVSVIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSP 130
Query: 130 LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWK 189
+ ++AL+++ K P++I I D + L +L+ Y++LLE GD +F
Sbjct: 131 IVKKALRMIPHK-------PLVIDIDDPNFNEGQLIGSLT-----YDQLLEEGDSDFESI 178
Query: 190 PPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGN 249
P++EW +I+L YTSGTT +PKGV+ +R AYL +++ V++W M E VYLWTLP+FH N
Sbjct: 179 RPKNEWDAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCN 238
Query: 250 GWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPL 309
GWCF WS+AA GTSV LR A+ I+ I V FC APIVLN + A P +
Sbjct: 239 GWCFPWSIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEPS-LKADI 297
Query: 310 PHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQAR 369
H V V T G+PPP ++ M GF+VTH YGL+E GP+ VCAW+ W+ E QA+
Sbjct: 298 NHPVKVMTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAK 357
Query: 370 LNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFAN 429
L +RQGV+ L+ L V D +T +P+P DG+++GE+ MRGN+VMKGYLKNP + AF
Sbjct: 358 LKSRQGVRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDG 417
Query: 430 G 430
G
Sbjct: 418 G 418
|
|
| TIGR_CMR|CPS_4259 CPS_4259 "AMP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 196/421 (46%), Positives = 271/421 (64%)
Query: 10 LPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGP 69
L N AN+ ALTP+ FLERAA V+P + + V +TW + +QRC R ASAL++ IG
Sbjct: 11 LEPNEANYMALTPISFLERAAFVYPDKTATVNGDIRHTWLEVFQRCSRFASALAKRGIGR 70
Query: 70 GTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA 129
G VSV++PN+ +EVHFGVPM+GAVLN IN RL+ +A IL HAE ++ D+++
Sbjct: 71 GDTVSVIAPNISEHFEVHFGVPMSGAVLNSINTRLDAEAIAFILVHAETKVLITDKEFSP 130
Query: 130 LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWK 189
+ ++AL+++ K P++I I D + L +L+ Y++LLE GD +F
Sbjct: 131 IVKKALRMIPHK-------PLVIDIDDPNFNEGQLIGSLT-----YDQLLEEGDSDFESI 178
Query: 190 PPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGN 249
P++EW +I+L YTSGTT +PKGV+ +R AYL +++ V++W M E VYLWTLP+FH N
Sbjct: 179 RPKNEWDAISLNYTSGTTGDPKGVVYHYRGAYLNAVSNVMSWSMGEHPVYLWTLPMFHCN 238
Query: 250 GWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPL 309
GWCF WS+AA GTSV LR A+ I+ I V FC APIVLN + A P +
Sbjct: 239 GWCFPWSIAATAGTSVSLRHVRAEPIFNLIRSEKVGYFCGAPIVLNMLNGAEPS-LKADI 297
Query: 310 PHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQAR 369
H V V T G+PPP ++ M GF+VTH YGL+E GP+ VCAW+ W+ E QA+
Sbjct: 298 NHPVKVMTAGAPPPASVIEGMEASGFKVTHTYGLTETYGPSVVCAWHDEWNEESPEKQAK 357
Query: 370 LNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFAN 429
L +RQGV+ L+ L V D +T +P+P DG+++GE+ MRGN+VMKGYLKNP + AF
Sbjct: 358 LKSRQGVRSPMLDQLMVADPETLEPMPKDGESVGEIFMRGNLVMKGYLKNPSTTQAAFDG 417
Query: 430 G 430
G
Sbjct: 418 G 418
|
|
| TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 199/426 (46%), Positives = 272/426 (63%)
Query: 7 IDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKH-YTWQQTYQRCRRLASALSQL 65
++++ AN LTP+ FLERAATV+ S+VY S YTW++T RC R+AS+LS +
Sbjct: 1 MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60
Query: 66 SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125
IG VSVLSPN PAMYE+ F VPM+GA+LN IN RL+ V+++L H E+ L+FVD
Sbjct: 61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDV 120
Query: 126 QYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA-LSKGVTEYEKLLETGDP 184
LA EA+ +M PP+L+VI D+ + + A LSK Y+ L+E GDP
Sbjct: 121 FSVDLAVEAVSMMTTD------PPILVVIADKEEEGGVADVADLSKFSYTYDDLIERGDP 174
Query: 185 EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLP 244
F W P EW + L YTSGTT+ PKGV+ HR ++MS++ ++ W + + VYLWTLP
Sbjct: 175 GFKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLP 234
Query: 245 IFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED 304
IFH NGW W +AA+ GT+V LR+ A IY+ I +HGVT+ C AP+VLN +++A E
Sbjct: 235 IFHSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLN-MLSATQES 293
Query: 305 TILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPF 364
PL H VN+ T GSPPP +LL GF ++H YGL+E G CAW P W+ LP
Sbjct: 294 Q--PLNHPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPA 351
Query: 365 EAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424
+ARL ARQGV+ + +DV+D ++ + +G+T+GE+VMRG+ VM GYLK+P E
Sbjct: 352 SDRARLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTE 411
Query: 425 EAFANG 430
+A NG
Sbjct: 412 KALKNG 417
|
|
| TAIR|locus:2009774 BZO1 "benzoyloxyglucosinolate 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 190/428 (44%), Positives = 265/428 (61%)
Query: 7 IDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLS 66
+DDL AN LTP+ FL+RA+ +P R S++Y +TW QTY RC RLA++L L+
Sbjct: 1 MDDLALCEANNVPLTPMTFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126
I VSV++PN PA+YE+HF VPM GAVLN IN RL+ ++A IL HA+ ++F+D+
Sbjct: 61 ISKNDVVSVMAPNTPALYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFLDRS 120
Query: 127 YFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEF 186
+ ALA E+L ++ + L PV+ + ++ RA E +YE L++ G+P
Sbjct: 121 FEALARESLHLLSSEDSNL-NLPVIFIHENDFPKRASFEEL------DYECLIQRGEPTP 173
Query: 187 AWKPP----RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWT 242
+ +DE I+L YTSGTTA+PKGV++SHR AYL +L+ ++ W M VYLWT
Sbjct: 174 SMVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLCTLSAIIGWEMGTCPVYLWT 233
Query: 243 LPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP 302
LP+FH NGW FTW AA GTSV +R +A IYK I H VT+ C P V N ++
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 303 EDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSL 362
D + P V+V TGGSPPP ++ + + GF+V H YG +E GP C W W+ L
Sbjct: 294 LD-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGQTEATGPILFCEWQDEWNRL 352
Query: 363 PFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
P Q L ARQG+ + L +DV + +T + P DGKT+GE++++G+ +MKGYLKNPKA
Sbjct: 353 PENQQMELKARQGISILGLADVDVKNKETQKSAPRDGKTMGEILIKGSSIMKGYLKNPKA 412
Query: 423 NEEAFANG 430
EAF +G
Sbjct: 413 TFEAFKHG 420
|
|
| TAIR|locus:2171402 AAE5 "acyl activating enzyme 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 190/418 (45%), Positives = 265/418 (63%)
Query: 15 ANFTALTPLWFLERAATVHPTRKSVVYESKH-YTWQQTYQRCRRLASALSQLSIGPGTAV 73
AN LTP+ FLERAATV+ S+VY S YTW++T RC R+AS+LS + IG V
Sbjct: 9 ANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSIGIGRSDVV 68
Query: 74 SVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEE 133
SVLSPN PAMYE+ F VPM+GA+LN IN RL+ V+++L H + L+FVD LA E
Sbjct: 69 SVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDVFSVDLAVE 128
Query: 134 ALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA-LSKGVTEYEKLLETGDPEFAWKPPR 192
A+ +M PP+L+ I D+ + + A +K Y+ L+ GD +F W P
Sbjct: 129 AISMMTTD------PPILVFIADKEEEGGDADVADRTKFSYTYDDLIHRGDLDFKWIRPE 182
Query: 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC 252
EW + L YTSGTT+ PKGV+ HR ++MS++ ++ W + + VYLWTLPIFH NGW
Sbjct: 183 SEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPIFHANGWS 242
Query: 253 FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHV 312
+ W +AA+ GT+V LR+ A IY+ I +HGVT+ C AP+VLN +++A E PL
Sbjct: 243 YPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLN-MLSATNE--FQPLNRP 299
Query: 313 VNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNA 372
VN+ T G+PPP +LL GF ++H YGL+E G CAW P W+ LP +ARL A
Sbjct: 300 VNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRARLKA 359
Query: 373 RQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
RQGV+ + +DV+D ++ + + +G+T+GE+VMRG+ +M GYLK+P E+A NG
Sbjct: 360 RQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALKNG 417
|
|
| TAIR|locus:2009714 AAE12 "acyl activating enzyme 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 189/428 (44%), Positives = 261/428 (60%)
Query: 7 IDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLS 66
+D+L AN LTP+ FL+RA+ +P R S++Y +TW QTY RC RLA++L L+
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126
IG VSV++PN PAMYE+HF VPM GAVLN IN RL+ ++A IL HA+ ++F+ +
Sbjct: 61 IGKNDVVSVVAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFIYRS 120
Query: 127 YFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEF 186
+ LA E L+++ + L P + I +S ++YE L++ G+P
Sbjct: 121 FEPLAREILQLLSSEDSNLNLPVIFI-------HEIDFPKRVSSEESDYECLIQRGEPTP 173
Query: 187 AWKPP----RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWT 242
+DE I+L YTSGTTA+PKGV++SHR AYL +L+ ++ W M VYLWT
Sbjct: 174 LLLARMFCIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWT 233
Query: 243 LPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP 302
LP+FH NGW FTW AA GTSV +R +A IYK I H VT+ C P V N ++
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 303 EDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSL 362
D + V+V TGGSPPP ++ + + GF+V H YGL+E GP C W W+ L
Sbjct: 294 LD-LSHRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRL 352
Query: 363 PFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
P Q L ARQG+ + L +DV + +T + +P DGKT+GE+VM+G+ +MKGYLKNPKA
Sbjct: 353 PENQQMELKARQGLSILGLTEVDVRNKETQESVPRDGKTMGEIVMKGSSIMKGYLKNPKA 412
Query: 423 NEEAFANG 430
EAF +G
Sbjct: 413 TYEAFKHG 420
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VZF1 | AEE7_ARATH | 6, ., 2, ., 1, ., 2 | 0.6666 | 0.9906 | 0.7486 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 0.0 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 0.0 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 0.0 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 1e-133 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 1e-89 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-85 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 3e-73 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-72 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-58 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-45 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 5e-43 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-42 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 4e-41 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-41 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-37 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 2e-34 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 8e-33 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 2e-31 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-30 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 4e-30 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 2e-28 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 7e-28 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-27 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-26 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 3e-26 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 3e-25 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 4e-25 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-24 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 9e-24 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 4e-23 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-22 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-22 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 2e-22 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 4e-22 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-19 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 9e-19 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-18 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 2e-18 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 3e-18 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 4e-18 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 4e-18 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-17 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-17 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-17 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 3e-17 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 5e-17 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 5e-17 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 1e-16 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 1e-16 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-16 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 4e-16 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 5e-16 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 5e-16 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 7e-16 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-15 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 1e-15 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 2e-15 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 3e-15 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 6e-15 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 8e-15 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 8e-15 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-14 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-14 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 1e-14 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-13 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-13 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 3e-13 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 4e-13 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 4e-13 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 6e-13 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-12 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-12 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 1e-12 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 2e-12 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-12 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 7e-12 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 1e-11 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-11 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 2e-11 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 5e-11 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 6e-11 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 7e-11 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 6e-10 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 8e-10 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-09 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-09 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 5e-09 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 6e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-08 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 1e-08 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 1e-08 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-08 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 1e-08 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-08 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-08 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 3e-08 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 4e-08 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 5e-08 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 9e-08 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 9e-08 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 1e-07 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-07 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 3e-07 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 4e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-07 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 6e-07 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-06 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 1e-06 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 1e-06 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-06 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 2e-06 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-06 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 2e-06 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 3e-06 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 4e-06 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-06 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 5e-06 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 5e-06 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 6e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-06 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-05 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 1e-05 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 1e-05 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 2e-05 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 2e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-05 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 2e-05 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 4e-05 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 5e-05 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 7e-05 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 1e-04 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-04 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 2e-04 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 2e-04 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 2e-04 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-04 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 3e-04 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 3e-04 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 6e-04 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 7e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 9e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.001 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 0.001 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 0.002 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 0.002 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 0.003 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.003 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 0.003 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 0.004 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 0.004 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 0.004 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 0.004 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 0.004 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 760 bits (1963), Expect = 0.0
Identities = 314/430 (73%), Positives = 365/430 (84%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLAS 60
M + DIDDLPKN AN+TALTPLWFLERAA VHPTRKSVV+ S YTW QTYQRCRRLAS
Sbjct: 1 MAKERDIDDLPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLAS 60
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
AL++ SIGPG+ V+V++PN+PAMYE HFGVPM GAV+NC+N RLN +A +L H+++ +
Sbjct: 61 ALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEV 120
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
V VDQ++F LAEEALKI+ K + FKPP+LIVIGD TCD L+YAL KG EYEK LE
Sbjct: 121 VMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLE 180
Query: 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240
TGDPEFAWKPP DEWQSIALGYTSGTTA+PKGV++ HR AYLM+L+ L WGM EGAVYL
Sbjct: 181 TGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYL 240
Query: 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
WTLP+FH NGWCFTW+LAALCGT++ LRQ +AKAIY AIA +GVT+FCAAP+VLN+IVNA
Sbjct: 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNA 300
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360
P +TILPLP VV+V T G+ PPP +L AMS+KGFRVTH YGLSE GP+TVCAW P WD
Sbjct: 301 PKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWD 360
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
SLP E QARLNARQGV+ + LEGLDV+DTKT +P+PADGKT+GE+VMRGNMVMKGYLKNP
Sbjct: 361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNP 420
Query: 421 KANEEAFANG 430
KANEEAFANG
Sbjct: 421 KANEEAFANG 430
|
Length = 567 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 604 bits (1560), Expect = 0.0
Identities = 222/423 (52%), Positives = 287/423 (67%), Gaps = 12/423 (2%)
Query: 8 DDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSI 67
L +N AN+ LTPL FLERAA V+P R +V++ + TW +TY RCRRLASAL++ I
Sbjct: 6 QGLDRNAANYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGI 65
Query: 68 GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY 127
G G V+VL PN+PAM E HFGVPM GAVLN +N RL+ ++A +L H EA ++ VD ++
Sbjct: 66 GRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEF 125
Query: 128 FALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFA 187
+A EAL ++ G P +VI D G +YE L +GDP+FA
Sbjct: 126 AEVAREALALLPG--------PKPLVIDV---DDPEYPGGRFIGALDYEAFLASGDPDFA 174
Query: 188 WKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFH 247
W P DEW +IAL YTSGTT NPKGV+ HR AYL +L+ +L WGM + VYLWTLP+FH
Sbjct: 175 WTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFH 234
Query: 248 GNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL 307
NGWCF W++AA GT+V LR+ K I+ I EHGVT++C APIVL++++NAP E
Sbjct: 235 CNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA- 293
Query: 308 PLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQ 367
+ H V+ G+ PP ++ M + GF +THVYGL+E GPATVCAW P WD+LP + +
Sbjct: 294 GIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDER 353
Query: 368 ARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
A+L ARQGV+ EG+ VLD T QP+PADG+TIGE++ RGN+VMKGYLKNPKA EEAF
Sbjct: 354 AQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF 413
Query: 428 ANG 430
A G
Sbjct: 414 AGG 416
|
Length = 545 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 595 bits (1536), Expect = 0.0
Identities = 226/414 (54%), Positives = 281/414 (67%), Gaps = 13/414 (3%)
Query: 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVL 76
+ LTPL FLERAA V+P R +VVY + YT+++TY RCRRLASALS+L IG G V+VL
Sbjct: 1 YVPLTPLSFLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVL 60
Query: 77 SPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALK 136
+PN PAM E HFGVPM GAVL +N RL+ ++A IL H+EA ++FVDQ++ +LAEEAL
Sbjct: 61 APNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALA 120
Query: 137 IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQ 196
++ K +T A +YE LL GDP+ PP DEW
Sbjct: 121 LLSTK------------EIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWD 168
Query: 197 SIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWS 256
I+L YTSGTT NPKGV+ +HR AYL +L V+ WGM + VYLWTLP+FH NGWCF W+
Sbjct: 169 PISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNGWCFPWA 228
Query: 257 LAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVN 316
+ A+ GT V LR+ A AIY I +H VT+ C AP VLN + NAP D LPLP V V
Sbjct: 229 ITAVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEAD-KLPLPRPVRVM 287
Query: 317 TGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGV 376
T G+PPPP ++ M + GF VTHVYGL+E GP TVC W P WD+LP E +ARL ARQGV
Sbjct: 288 TAGAPPPPAVIKKMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGV 347
Query: 377 KCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+ + LE +DV+D +T + +P DGKTIGE+VMRGN VMKGY KNP+A EEAFA G
Sbjct: 348 RYVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGG 401
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 394 bits (1012), Expect = e-133
Identities = 193/428 (45%), Positives = 263/428 (61%), Gaps = 12/428 (2%)
Query: 7 IDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLS 66
+D+L AN LTP+ FL+RA+ +P R S++Y +TW QTY RC RLA++L L+
Sbjct: 1 MDNLALCEANNVPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLN 60
Query: 67 IGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126
I VSVL+PN PAMYE+HF VPM GAVLN IN RL+ ++A IL HA+ ++FVD+
Sbjct: 61 ITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRS 120
Query: 127 YFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEF 186
+ LA E L ++ + L PV+ + + R E +YE L++ G+P
Sbjct: 121 FEPLAREVLHLLSSEDSNL-NLPVIFIHEIDFPKRPSSEE------LDYECLIQRGEPTP 173
Query: 187 AWKPP----RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWT 242
+ +DE I+L YTSGTTA+PKGV++SHR AYL +L+ ++ W M VYLWT
Sbjct: 174 SLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWT 233
Query: 243 LPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP 302
LP+FH NGW FTW AA GTSV +R +A IYK I H VT+ C P V N ++
Sbjct: 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNS 293
Query: 303 EDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSL 362
D + P V+V TGGSPPP ++ + + GF+V H YGL+E GP C W W+ L
Sbjct: 294 LD-LSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRL 352
Query: 363 PFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
P Q L ARQGV + L +DV + +T + +P DGKT+GE+V++G+ +MKGYLKNPKA
Sbjct: 353 PENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKA 412
Query: 423 NEEAFANG 430
EAF +G
Sbjct: 413 TSEAFKHG 420
|
Length = 579 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 1e-89
Identities = 107/416 (25%), Positives = 165/416 (39%), Gaps = 33/416 (7%)
Query: 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
R V E T+ + YQR RRL L L +G G V+ L N
Sbjct: 2 ERAAALFGRKEVVSRLH---TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 58
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
E +F VP GAVL+ N RL+P +A IL HAE ++ D L E ++
Sbjct: 59 HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK 118
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA 199
+ + E E E A E +
Sbjct: 119 TVQHF------------------VVMDEKAP---EGYLAYEEALGEEADPVRVPERAACG 157
Query: 200 LGYTSGTTANPKGVLVSHRAAYL--MSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSL 257
+ YT+GTT PKGV+ SHRA L ++ ++V + E V L +P+FH N WC ++
Sbjct: 158 MAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 217
Query: 258 AALCGTSVMLRQ-ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTI-LPLPHVVNV 315
+ V+ ++ + GVT P V ++ + ++ L + +
Sbjct: 218 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY--LESTGHRLKTLRRL 275
Query: 316 NTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQG 375
GGS P ++ + G V YGL+E + + +SL E + L A+ G
Sbjct: 276 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 335
Query: 376 VKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE-EAFANG 430
+ L V D + +P+P DGK +GEV ++G + GY N +A +G
Sbjct: 336 LPIPL-VRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG 389
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 1e-85
Identities = 137/415 (33%), Positives = 203/415 (48%), Gaps = 27/415 (6%)
Query: 25 FLERAATVHPTRKSVVY-----ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
LE AA R+ +V YT+ Y+R RRLA+AL L + PG V+ L+ N
Sbjct: 1 ILEHAARYFGDRE-IVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWN 59
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
E++F VP GAVL+ +N RL+P +A I+ HAE ++FVD + L E
Sbjct: 60 THRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEA------ 113
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA 199
P + V D A + V YE+LLE PE+ W P DE +
Sbjct: 114 ------IAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYEW-PELDENTAAG 166
Query: 200 LGYTSGTTANPKGVLVSHRAAYL--MSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSL 257
L YTSGTT NPKGV+ SHR+ L ++ + + G+ E L +P+FH N W ++
Sbjct: 167 LCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESDTVLPVVPMFHVNAWGLPYA- 225
Query: 258 AALCGTSVML--RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNV 315
A + G ++L R ++ I E VT P + ++N E L + V
Sbjct: 226 ATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNY-LEANGKDLSSLRRV 284
Query: 316 NTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQG 375
GGS P ++ + ++G V H +G++E + TV P+ LP E + L A+QG
Sbjct: 285 VVGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQG 344
Query: 376 VKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+E L ++D + N +P DGKT+GE+V+RG V Y K+P+ EE +G
Sbjct: 345 RPVPGVE-LRIVDDEGN-ELPWDGKTVGELVVRGPWVTGSYYKDPEKTEELTRDG 397
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 3e-73
Identities = 126/412 (30%), Positives = 185/412 (44%), Gaps = 33/412 (8%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L A HP +++V ++ + T+ + +R RLA+AL L + G V+V N
Sbjct: 11 ILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYL 70
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
E +F VP GAVL+ IN RL P +A IL AE +V VD ++ L L +
Sbjct: 71 EAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQL------ 124
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTS 204
P V VI + AP L+ V EYE+LL F + P DE + A+ YTS
Sbjct: 125 ---PTVRTVIVEGDGPAAP----LAPEVGEYEELLAAASDTFDF-PDIDENDAAAMLYTS 176
Query: 205 GTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL--CG 262
GTT +PKGV++SHR +L SL V + VYL +P+FH + W AL
Sbjct: 177 GTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAW--GLPYLALMAGA 234
Query: 263 TSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP---PEDTILPLPHVVNVNTGG 319
V+ R+ + + I VT F A P + ++ AP D + V GG
Sbjct: 235 KQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVD----FSSLRLVIYGG 290
Query: 320 SPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC 378
+ PP +L +K G + YG++E P P Q G
Sbjct: 291 AALPPALLREFKEKFGIDLVQGYGMTET-SPVVSVLP-PEDQLP---GQWTKRRSAGRPL 345
Query: 379 MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+E ++D + +P DG +GE+++RG +M+GY P+A E G
Sbjct: 346 PGVE-ARIVDDDGD-ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGG 395
|
Length = 521 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 1e-72
Identities = 117/422 (27%), Positives = 176/422 (41%), Gaps = 43/422 (10%)
Query: 20 LTPLWFLERAATVHPTRKSVVY--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLS 77
LT LERAA +P R ++++ T+++ +R RLA+AL L + PG V++L
Sbjct: 11 LTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILL 70
Query: 78 PNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKI 137
PN P GAV +N RL P +A IL A A ++ ++ AL E
Sbjct: 71 PNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVA-- 128
Query: 138 MEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQS 197
E L V++++GD E L G A P D
Sbjct: 129 -----EALPVVLVVLLVGDADDRLPIT----------LEALAAEGPGPDADARPVDPDDL 173
Query: 198 IALGYTSGTTANPKGVLVSHR--AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255
L YTSGTT PKGV+++HR A + L G+ V L LP+FH G
Sbjct: 174 AFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGL 233
Query: 256 SLAALCG-TSVMLRQA--SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHV 312
L G T V+L + + I ++ VT P L +++ P +D +
Sbjct: 234 LAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSL 293
Query: 313 VNVNTGGSPPPPPILLAMSQKG--FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARL 370
V +GG+P PP +L ++ + YGL+E + T+ +
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA---------- 343
Query: 371 NARQGVKCMCLEGLDV--LDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428
+ G L G++V +D + +P +GE+ +RG VMKGY P+A EAF
Sbjct: 344 --KPGSVGRPLPGVEVRIVDPDGGEVLP---GEVGEIWVRGPNVMKGYWNRPEATAEAFD 398
Query: 429 NG 430
Sbjct: 399 ED 400
|
Length = 534 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 2e-58
Identities = 95/385 (24%), Positives = 150/385 (38%), Gaps = 36/385 (9%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNP 106
T+++ +R RLA+AL L +GPG V++L PN P V GA ++ L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 107 LNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEY 166
+A IL +EA ++ D + E L L LI++GD+
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLK-------LLVLLALIIVGDDGEGLD---- 109
Query: 167 ALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLN 226
+ L G PP D + YTSGTT PKGV+++HR ++
Sbjct: 110 -------LLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAG 162
Query: 227 VVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR--QASAKAIYKAIAEHGV 284
+ +G+ G L LP+ + GT V++ + I ++ V
Sbjct: 163 LAERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKV 222
Query: 285 TNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ--KGFRVTHVYG 342
T P +L ++ AP E L + V +GG P PP +L + + G + + YG
Sbjct: 223 TVLYGVPTLLRLLLKAPEEKK-YDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYG 281
Query: 343 LSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTI 402
+E AT + + VLD + P +
Sbjct: 282 PTETTVVATANLPGDPEVKPGSIGRPLPGVE----------VKVLDEEGE---PVPPGEV 328
Query: 403 GEVVMRGNMVMKGYLKNPKANEEAF 427
GE+ +RG V +GYL +P+ E F
Sbjct: 329 GELCIRGPGVARGYLNDPELTAERF 353
|
Length = 412 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-45
Identities = 114/400 (28%), Positives = 185/400 (46%), Gaps = 22/400 (5%)
Query: 26 LERAATVHPTR----KSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP 81
++ AA +H R +SV T+ Q + R +++ AL + I G V+ ++ N
Sbjct: 16 IDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTW 75
Query: 82 AMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGK 141
E +G+ GA+ + +N RL P +A I+ HAE +V D + + I+E
Sbjct: 76 RHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTF-------VPILEKI 128
Query: 142 SEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALG 201
++ L +V+ D A + K YE+ + D +FAWK DE + +
Sbjct: 129 ADKLPSVERYVVLT----DAAHMPQTTLKNAVAYEEWIAEADGDFAWK-TFDENTAAGMC 183
Query: 202 YTSGTTANPKGVLVSHRAAYLMSL--NVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
YTSGTT +PKGVL SHR+ L +L N G L +P+FH N W +S +
Sbjct: 184 YTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243
Query: 260 LCGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318
+ VM + ++Y+ + VT P V ++ E L LPH+ V G
Sbjct: 244 MGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQY-MEKEGLKLPHLKMVVCG 302
Query: 319 GSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC 378
GS P ++ A G V H +G++E++ T+ A P + LP +A+ + +QG
Sbjct: 303 GSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPP 362
Query: 379 MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLK 418
+E + + D + +P DGKT G + +RG V Y +
Sbjct: 363 FGVE-MKITDDAGKE-LPWDGKTFGRLKVRGPAVAAAYYR 400
|
Length = 542 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 5e-43
Identities = 114/381 (29%), Positives = 177/381 (46%), Gaps = 26/381 (6%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
YT++ +R ++LA AL+ L + PG V L+ N E ++GV +GAV + IN RL
Sbjct: 40 YTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLF 99
Query: 106 PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165
P +A I+ HAE V D + L + + + + + D A L
Sbjct: 100 PEQIAYIVNHAEDRYVLFDLTFLPLVDA----LAPQCPNVKGWVAM-------TDAAHLP 148
Query: 166 YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL 225
A S + YE L+ D ++ W P DE Q+ +L YTSGTT NPKG L SHR+ L +
Sbjct: 149 -AGSTPLLCYETLVGAQDGDYDW-PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAY 206
Query: 226 NVVLTWGMKEGA--VYLWTLPIFHGNGWCFTWSLAALCGTSVML--RQASAKAIYKAIAE 281
L M A L +P+FH N W +S A L G ++L K++Y+ I
Sbjct: 207 GAALPDAMGLSARDAVLPVVPMFHVNAWGLPYS-APLTGAKLVLPGPDLDGKSLYELIEA 265
Query: 282 HGVTNFCAAPIVLNSIVNAPPEDTIL--PLPHVVNVNTGGSPPPPPILLAMSQK-GFRVT 338
VT P V ++N E + L V GGS PP ++ + G V
Sbjct: 266 ERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTV---IGGSACPPAMIRTFEDEYGVEVI 322
Query: 339 HVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPAD 398
H +G++E++ T+C LP + Q +L +QG + + + ++ + +P D
Sbjct: 323 HAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQG-RVIYGVDMKIVGDD-GRELPWD 380
Query: 399 GKTIGEVVMRGNMVMKGYLKN 419
GK G++ +RG V+ Y +
Sbjct: 381 GKAFGDLQVRGPWVIDRYFRG 401
|
Length = 539 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 1e-42
Identities = 106/418 (25%), Positives = 174/418 (41%), Gaps = 50/418 (11%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L R+A +P + ++V+ + +T+ + R+A+AL L + G V+ L N A
Sbjct: 16 ILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYA 75
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
+ GAV +NF L +A IL H+ A VD AE AL ++ +
Sbjct: 76 LLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLI 135
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTS 204
L L++ G E G ++ E G D+ + YTS
Sbjct: 136 L----SLVLGGREA----------PGGWLDFADWAEAGSVAEPDVELADD-DLAQILYTS 180
Query: 205 GTTANPKGVLVSHRAAYLMS--LNVVLTWGMKEGAVYLWTLPIFHGNGW-CFTWSLAALC 261
GT + PKG +++HRA L++ ++ ++ M + L LP++H F +
Sbjct: 181 GTESLPKGAMLTHRA--LIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVG 238
Query: 262 GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT---- 317
T+V+L + I + I +T+F A P V S++ P DT ++++
Sbjct: 239 ATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDT-------RDLSSLRKG 291
Query: 318 --GGSPPPPPILLAMSQK--GFRVTHVYGLSEINGP-ATVCAWNPNWDSLPFEAQARLNA 372
G S P +L + ++ G R + YG +EI P ATV L E R
Sbjct: 292 YYGASIMPVEVLKELRERLPGLRFYNCYGQTEI-APLATV---------LGPEEHLRRPG 341
Query: 373 RQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
G + +E V+D + +GE+V R +M GY +P+ EAF G
Sbjct: 342 SAGRPVLNVE-TRVVDDD-GNDVAPG--EVGEIVHRSPQLMLGYWDDPEKTAEAFRGG 395
|
Length = 523 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 4e-41
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 15/230 (6%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC 261
YTSGTT PKGV+++HR ++N + + G VYL P++H G F A
Sbjct: 8 YTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPALAAG 67
Query: 262 GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSP 321
GT V++ + +A+ I H VT+ P + ++ P L + + G +P
Sbjct: 68 GTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARY-DLSSLRLIIYGAAP 126
Query: 322 PPPPILLAMSQ-KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMC 380
P + AM + G YG++E T+ L E R G
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTETGPTTTL---------LSPEDWLRKLGSVGRPVPG 177
Query: 381 LEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+E + ++D +P +GE+V+RG VM GY P+A EA +G
Sbjct: 178 VE-VRIVDEDGR-ELPP--GEVGEIVVRGPAVMAGYWNRPEATAEALRDG 223
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 4e-41
Identities = 104/412 (25%), Positives = 164/412 (39%), Gaps = 46/412 (11%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
L RAA +++ V+ + T+ + R RR A+AL+ L IG G V++ +PN P
Sbjct: 11 LARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVI 70
Query: 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGL 145
G GAV+ +N R A IL +A +FV + + A
Sbjct: 71 AALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATT--------- 121
Query: 146 FKPPVL--IVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYT 203
+ P L +VI + D E + + L GDP + + L +T
Sbjct: 122 -RLPALEHVVICETEEDDPHTEKMKT-----FTDFLAAGDPAERAPEVDPDDVADIL-FT 174
Query: 204 SGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC-- 261
SGTT PKG +++HR + + G+ EG YL P FH G+ A L
Sbjct: 175 SGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGV-NAPLMRG 233
Query: 262 GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP---PEDTILPLPHVVNVNTG 318
T + L +++ I +T P + NS++ P ED L + TG
Sbjct: 234 ATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAED----LSSLRLAVTG 289
Query: 319 GSPPPPPILLAMSQKGFRVTHV---YGLSEINGPATVCAWNPNWDSLPFEAQARLNARQ- 374
+ P +L + V V YGLSE +G T + + A
Sbjct: 290 AASMPVALLERFESE-LGVDIVLTGYGLSEASGVTTFN---------RLDDDRKTVAGTI 339
Query: 375 GVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426
G +E +++ + + +GE+++RG VMKGY +P+A A
Sbjct: 340 GTAIAGVE-NKIVNELGEEVPVGE---VGELLVRGPNVMKGYYDDPEATAAA 387
|
Length = 513 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 4e-37
Identities = 97/425 (22%), Positives = 158/425 (37%), Gaps = 98/425 (23%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
LERAA P R ++ + + T+ + + R A+ L QL + G V+++ PN P
Sbjct: 4 LLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFP 63
Query: 85 EVHFGVPMTGAVLNCINFRLNPL----NVAIILGHAEAALVFVDQQYFALAEEALKIMEG 140
+FG+ GAV + +NPL + L + A ++ V
Sbjct: 64 IAYFGILKAGAV--VVP--VNPLYTPRELEHQLNDSGAKVLIV----------------- 102
Query: 141 KSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL 200
+E L +G P L
Sbjct: 103 -------------------------------AISFEDALASGAPLP-LPVELSPDDLAVL 130
Query: 201 GYTSGTTANPKGVLVSHR--AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
YT GTT PKG +++HR A + + + + +L LP+FH F ++
Sbjct: 131 QYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHI----FGLTVN 186
Query: 259 ALCG-----TSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVV 313
L G T+V++ + K I + T F P + N+++N PE +
Sbjct: 187 MLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNH-PEFKKYDFSSLR 245
Query: 314 NVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDS-------LPFE 365
+GG+P P + +K G + YGL+E + V NP LP
Sbjct: 246 LCISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSP---VTTVNPLDGERKPGSIGLPL- 301
Query: 366 AQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
G + ++D + N +P G+ +GE+V+RG VMKGY P+ E
Sbjct: 302 --------PGTEVK------IVDDEGN-ELP-PGE-VGELVVRGPQVMKGYWNRPEETAE 344
Query: 426 AFANG 430
+G
Sbjct: 345 VLTDG 349
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-34
Identities = 95/389 (24%), Positives = 150/389 (38%), Gaps = 42/389 (10%)
Query: 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR 103
+ T+ + + RRLA+ L+ G V +LSPN V V GAV+ N
Sbjct: 31 RALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPL 90
Query: 104 LNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP 163
P +A + + A L + K L PV V+ D D +
Sbjct: 91 YTPAEIAKQVKDSGAKLAITTSELAE-----------KLASLALEPV--VLLDSADDGSA 137
Query: 164 LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLM 223
L + +P D AL Y+SGTT KGV+++HR
Sbjct: 138 AIDDLLFA--------DEPEPPVVVIKQDD---VAALPYSSGTTGRSKGVMLTHRNLIAN 186
Query: 224 SLNVVLTWGMKEGA--VYLWTLPIFHGNGWC-FTWSLAALCGTSVMLRQASAKAIYKAIA 280
+V G V L LP+FH G +L L T V++ + + AI
Sbjct: 187 VAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIE 246
Query: 281 EHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQK--GFRVT 338
++ VT+ P ++ ++V P D L + + +G +P + A + G +
Sbjct: 247 KYKVTHLPVVPPIVLALVKHPIVDK-YDLSSLKQIGSGAAPLGKELAEAFRARFPGVELG 305
Query: 339 HVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPAD 398
YG++E + T+C + RL K ++D +T + +P
Sbjct: 306 QGYGMTESSPVTTMCP--VPEKDPKPGSVGRLVPNVEAK--------IVDPETGESLPP- 354
Query: 399 GKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ GE+ +RG VMKGYL NP+A E
Sbjct: 355 NQP-GELWVRGPQVMKGYLNNPEATAETI 382
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 8e-33
Identities = 92/403 (22%), Positives = 152/403 (37%), Gaps = 60/403 (14%)
Query: 43 SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINF 102
T+ ++ RLA L +L + G V+++SPN V G G +++ N
Sbjct: 8 GTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANP 67
Query: 103 RLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRA 162
P +A L ++ L+F D K+ E E + IV+
Sbjct: 68 SYTPDELAHQLKISKPKLIFCDPDELD------KVKEAAKELGPVVRI-IVLDSA----- 115
Query: 163 PLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQS----IALGYTSGTTANPKGVLVSHR 218
GV E LLE P AL Y+SGTT PKGV++SH+
Sbjct: 116 ------PDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHK 169
Query: 219 ---AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCG-TSVMLRQASAKA 274
A + + V L LP +H G T + LCG T +++ + ++
Sbjct: 170 NIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYG-LTTTLASLLCGATVIIMPKFDSET 228
Query: 275 IYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILP---LPHVVNVNTGGSPPPPPILLAMS 331
K I ++ VT+ P + ++ +P ++ L + + +G +P L
Sbjct: 229 FLKLIEKYKVTSLFLVPPIAVALAKSP----LVDKYDLSSLRVIFSGAAP-----LSKEL 279
Query: 332 QKGFR-------VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGL 384
Q+ R + YG++E T+ + RL K + +G
Sbjct: 280 QEELRKRFPNTTIKQGYGMTETGPATTLT----PPGDEKPGSVGRLVPNVEAKIVDEDGG 335
Query: 385 DVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
L N+ GE+ ++G +MKGYL NP+A +E
Sbjct: 336 KSLGP--NER--------GELCVKGPQIMKGYLNNPEATKETI 368
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 114/467 (24%), Positives = 173/467 (37%), Gaps = 98/467 (20%)
Query: 21 TPLWFLERAATVHPTRKSVVYES----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVL 76
T L P +++Y+ + T+++ Y+R R LAS L L I G V++
Sbjct: 17 TLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76
Query: 77 SPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALK 136
+ N P + GAV I P +A IL +E+ ++FV+ Q E L
Sbjct: 77 AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQ------ELLD 130
Query: 137 IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK----LLETGDPEFAWKPPR 192
++ E K LIVI D A AL V E L+++ E PP+
Sbjct: 131 LVLPVLEDCPKVVDLIVIIDLV-REAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPK 189
Query: 193 DEWQSIA-LGYTSGTTANPKGVLVSHR--AAYLMSLNVVLTWGMKEGAVYLWTLPIFH-- 247
+ +A + YTSGTT PKGV+++HR A + ++ VL + G L LP+ H
Sbjct: 190 PD--DLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPP-IGPGDRVLSFLPLAHIF 246
Query: 248 ------------GNGWCFTWSLAALCGTSVMLR-----------QASAKAIYKAIAEHGV 284
G F L +R + K I + +A+
Sbjct: 247 ERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPA 306
Query: 285 TNFCAAPIVLN--SIVNAPPEDTILPLPHVVNVN-------------------TGGSPPP 323
L + PL ++ + +GG+P
Sbjct: 307 VRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLS 366
Query: 324 PPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEG 383
P +L G + YGL+E + +V NP
Sbjct: 367 PELLHFFRSLGIPILEGYGLTETSAVVSV---NPPDR----------------------- 400
Query: 384 LDVLDTKTNQPIP-ADGKTI--GEVVMRGNMVMKGYLKNPKANEEAF 427
VL T +P+P + K GE+++RG VMKGY KNP+A EAF
Sbjct: 401 -FVLGT-VGKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAF 445
|
Length = 613 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 2e-30
Identities = 99/425 (23%), Positives = 163/425 (38%), Gaps = 83/425 (19%)
Query: 21 TPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV 80
P W +RA + P R ++ +E K T+ + ++ +A L+ L + G V++L N
Sbjct: 4 MPNWLKQRA-FLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNG 62
Query: 81 PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEG 140
M V + GAV +N RL+ + L AE + D + A + +
Sbjct: 63 MEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISV--- 119
Query: 141 KSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL 200
++ +L+ E + D + +
Sbjct: 120 ---------------------------------KFAELMNGPKEEAEIQEEFDLDEVATI 146
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL 260
YTSGTT PKGV+ ++ + ++ L G+ E +L +PIFH +G L+ L
Sbjct: 147 MYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISG------LSIL 200
Query: 261 C-----GTSVMLRQA-SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVN 314
G V+L + A+ I K + GVT +L ++ E T P
Sbjct: 201 MRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEGT-YP-SSFRC 258
Query: 315 VNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSL--------P-FE 365
+ GG P P P+L +KG V YG++E + + +P D+L P F
Sbjct: 259 MLLGGGPAPKPLLEQCKEKGIPVYQSYGMTET--ASQIVTLSPE-DALTKLGSAGKPLFP 315
Query: 366 AQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
+ ++ + GV P GE+V++G V KGYL A E
Sbjct: 316 CELKI-EKDGVVV--------------PP-----FEEGEIVVKGPNVTKGYLNREDATRE 355
Query: 426 AFANG 430
F +G
Sbjct: 356 TFQDG 360
|
Length = 483 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 4e-30
Identities = 127/423 (30%), Positives = 182/423 (43%), Gaps = 47/423 (11%)
Query: 26 LERAATVHPTRKSVVY---ESKHYTWQQTYQRCRRLASAL-SQLSIGPGTAVSVLSPNVP 81
LE +TVH + E + T+ R LA AL +L I V + N
Sbjct: 16 LEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCA 75
Query: 82 AMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGK 141
EV F V GAV N +N +L + I+ HAE ++ D LAE+ +I++
Sbjct: 76 EHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP---RLAEQLGEILKEC 132
Query: 142 SEGLFKPPV--LIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA 199
P V ++ IG D A V YE LL+ + W P DE + A
Sbjct: 133 ------PCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDW-PELDETTAAA 185
Query: 200 LGYTSGTTANPKGVLVSHRAAYL--MSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSL 257
+ Y++GTT PKGV+ SHR+ YL +SL + + G +L +PI+H W L
Sbjct: 186 ICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGV--PL 243
Query: 258 AA-LCGTSVML--RQASAKAIYKAIAE------HGVTNFCAAPIVLNSIVNAPPEDTILP 308
AA + GT ++ SA + K IA HGV +V + PPE L
Sbjct: 244 AAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMV--HYLKNPPERMSLQ 301
Query: 309 LPHVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQ 367
+V GGS PP ++ A ++ G V HV+G++E + TV A P+ S +
Sbjct: 302 EIYV-----GGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTV-ARPPSGVS----GE 351
Query: 368 ARLNAR--QGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
AR R QG LE V D Q + + + GE+ +RGN V Y +P
Sbjct: 352 ARWAYRVSQGRFPASLEYRIVND---GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGG 408
Query: 426 AFA 428
A
Sbjct: 409 GAA 411
|
Length = 576 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 87/409 (21%), Positives = 166/409 (40%), Gaps = 45/409 (11%)
Query: 24 WFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASAL-SQLSIGPGTAVSVLSPNVPA 82
+++E+ A +HP R +++ E + T++Q ++ ++A+ L +L++ G +++LS N
Sbjct: 6 YWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLE 65
Query: 83 MYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKS 142
+ F + + +N RL + L + ++FV++ + +A M+ S
Sbjct: 66 YIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALS----MQKVS 121
Query: 143 EGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGY 202
+ + I E DR + ++E S + Y
Sbjct: 122 Y--VQRVISITSLKEIEDRKIDNFV-----------------------EKNESASFIICY 156
Query: 203 TSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW-CFTWSLAALC 261
TSGTT PKG +++ + +LN + + LP+FH G F +
Sbjct: 157 TSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAG 216
Query: 262 GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSP 321
G ++ R+ I +H VT P + +++N +T L V GG+P
Sbjct: 217 GVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETT-NLQSVRWFYNGGAP 275
Query: 322 PPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCL 381
P ++ +GF +G++E +P L E R G +
Sbjct: 276 CPEELMREFIDRGFLFGQGFGMTET---------SPTVFMLSEEDARRKVGSIGKPVLFC 326
Query: 382 EGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+ +++D N+ + +GE+++RG VMK Y P A EE +G
Sbjct: 327 D-YELIDENKNKVEVGE---VGELLIRGPNVMKEYWNRPDATEETIQDG 371
|
Length = 496 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-28
Identities = 107/438 (24%), Positives = 180/438 (41%), Gaps = 69/438 (15%)
Query: 21 TPLWF-LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSP 78
T L+ LE +A +P + ++V+ + ++++ + RLA L Q + G V +
Sbjct: 10 TSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQ 69
Query: 79 NVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGH----AEAALVFVDQQYF-----A 129
N P ++ + AV+ +NP+N L H + A + V + A
Sbjct: 70 NSPQFVIAYYAILRANAVV----VPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPA 125
Query: 130 LAEEALK-IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAW 188
+ L+ ++ + I + PL+ GV +++ L G
Sbjct: 126 VGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPH 185
Query: 189 KPPRDEWQSIA-LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFH 247
D+ +A L YTSGTT PKG + +HR ++ VL +V L LP+FH
Sbjct: 186 TAGPDD---LAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFH 242
Query: 248 GNGWCFTWSLAA---LCGTSVML----RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
G S+ A T V++ R+A+A+ I + VT++ P ++ + A
Sbjct: 243 VTG--MVHSMNAPIYAGATVVLMPRWDREAAARLI----ERYRVTHWTNIPTMVVDFL-A 295
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQK-----GFRVTHVYGLSEINGPATVCAW 355
P L + + GG+ P A++++ G YGL+E T+
Sbjct: 296 SPGLAERDLSSLRYIGGGGAAMPE----AVAERLKELTGLDYVEGYGLTE-----TM--- 343
Query: 356 NPNWDSLPFEAQARLNARQGVKCMCLE----GLD--VLDTKTNQPIPADGKTIGEVVMRG 409
AQ N K CL G+D V+D +T + +P G+ +GE+V+ G
Sbjct: 344 ----------AQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELP-PGE-VGEIVVHG 391
Query: 410 NMVMKGYLKNPKANEEAF 427
V KGY P+A EAF
Sbjct: 392 PQVFKGYWNRPEATAEAF 409
|
Length = 546 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 2e-27
Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 26/233 (11%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC 261
YTSGTT PKG +++HR ++ G+ EG L +P+FH G +
Sbjct: 9 YTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVLASLTA 68
Query: 262 G-TSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP---PEDTILPLPHVVNVNT 317
G T V++ + A + I +T P + +++ P D L + +
Sbjct: 69 GATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFD----LSSLRTGIS 124
Query: 318 GGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQG 375
GG+P PP ++ + ++ +T YG++E +G T + + ++ P R
Sbjct: 125 GGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRP-GTVGRP----- 178
Query: 376 VKCMCLEGLDV--LDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426
L G++V +D +P +GE+ +RG VMKGY +P+A EA
Sbjct: 179 -----LPGVEVKIVDPDGG-EVPPG--EVGEICVRGYSVMKGYYNDPEATAEA 223
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 2e-26
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 30/240 (12%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
A+ YTSGTT PKGVL++H + G++ V L LP+FH N ++ A
Sbjct: 85 AILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYS-VYA 143
Query: 259 ALC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP--EDTILPLPHVVN 314
AL T V+L + SA + + +HG T F + ++ PP +D PL V
Sbjct: 144 ALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDHPLRFVF- 202
Query: 315 VNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNAR 373
G+P P I A ++ G ++ YG++E V P D P + R R
Sbjct: 203 ----GAPLPAAIWPAFEERFGVKLVEGYGMTE----TGVPIIAPG-DPAPPGSCGR--PR 251
Query: 374 QGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN---MVMKGYLKNPKANEEAFANG 430
GV+ + ++D +P +GE+V+R + KGY P+A +A+ NG
Sbjct: 252 PGVE------VRIVDEDGR-EVPPG--EVGELVVRPRRPWAMFKGYYGMPEATAKAWRNG 302
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 18/231 (7%)
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNG-WCFTWSLA 258
+ YTSGTT PKGV++SHR + + G+ EG V L LP+FH G
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64
Query: 259 ALCGTSVMLRQAS-AKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
GT V+ + + I ++ VT P + +++ A + L + + +
Sbjct: 65 LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGY-DLSSLRLLIS 123
Query: 318 GGSPPPPPIL-LAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGV 376
GG P P +L + G + YGL+E + V + NP+ + R GV
Sbjct: 124 GGEPLSPELLERFEERPGAPILEGYGLTETSV---VTSTNPDSELKKPGTVGR--PVPGV 178
Query: 377 KCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ + V+D + P +GE+V+RG VMKGY NP A
Sbjct: 179 E------VRVVDEEGK---PLPPGEVGELVVRGPWVMKGYWNNPPETTAAA 220
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 3e-25
Identities = 106/405 (26%), Positives = 164/405 (40%), Gaps = 47/405 (11%)
Query: 30 ATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFG 89
A P R ++VY + ++ + +QR + A L IG G V++L N A E+ F
Sbjct: 12 ARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71
Query: 90 VPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPP 149
GAV IN+RL VA ILG A A L+ VD+++ A+
Sbjct: 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALETPK------------ 119
Query: 150 VLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTAN 209
IVI A + + L G E + + L YTSGTT
Sbjct: 120 --IVID---------AAAQAD-----SRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDR 163
Query: 210 PKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC--GTSVML 267
PKGV+ S+ + S++ V+ G+ L P++H G +A L GT +
Sbjct: 164 PKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYH-VGAFDLPGIAVLWVGGTLRIH 222
Query: 268 RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL 327
R+ +A+ AI H +T AP++L+ ++ P D L + GG P +
Sbjct: 223 REFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDR-FDLDSLAWCIGGGEKTPESRI 281
Query: 328 LAMSQ--KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLD 385
++ R YGL+E T+ + + + R A ++ G
Sbjct: 282 RDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKI--GSTGRALAHVEIRIADGAG-- 337
Query: 386 VLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+ +P + K GE+ MRG V KGY K+P+ EAF
Sbjct: 338 -------RWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGD 373
|
Length = 497 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-25
Identities = 102/430 (23%), Positives = 154/430 (35%), Gaps = 78/430 (18%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
L R A + P ++ + TW++ R LA ALS+ +G G V +L N E
Sbjct: 23 LARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVE 82
Query: 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGL 145
M GA+ +NFRL P +A ++ A +V + +A I+ S
Sbjct: 83 SVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLS--- 139
Query: 146 FKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL-ETGDPEFAWKPPRDEWQSIALGYTS 204
++V G + D V YE LL E G P D I YTS
Sbjct: 140 ----TVVVAGGSSDD----------SVLGYEDLLAEAGPAHAPVDIPNDSPALIM--YTS 183
Query: 205 GTTANPKGVLVSHRAAYLMSLNVVLTWGM-KEGAVYLWTLPIFHGNGWCFTWSLAALCGT 263
GTT PKG +++H ++ + T G V +P+FH G L
Sbjct: 184 GTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAP 243
Query: 264 SVM--LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP---PEDTILPLPHVVNVNTG 318
+V+ L + + VT P ++ P D L ++ G
Sbjct: 244 TVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLALR-----VLSWG 298
Query: 319 GSPPPPPILLAMSQ--KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGV 376
+P +L M+ ++ +G +E++ P T
Sbjct: 299 AAPASDTLLRQMAATFPEAQILAAFGQTEMS-PVT------------------------- 332
Query: 377 KCMCLEGLDVLDT--KTNQPIP--------------ADGKTIGEVVMRGNMVMKGYLKNP 420
CM L G D + + IP G +GE+V R +M GY NP
Sbjct: 333 -CM-LLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVG-EVGEIVYRAPTLMSGYWNNP 389
Query: 421 KANEEAFANG 430
+A EAFA G
Sbjct: 390 EATAEAFAGG 399
|
Length = 542 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-24
Identities = 104/416 (25%), Positives = 157/416 (37%), Gaps = 55/416 (13%)
Query: 28 RAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVH 87
A +P R ++V T+ Q R R A L +G G AV++LS N P EV
Sbjct: 20 SALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRP---EV- 75
Query: 88 FGVPMTGAVLNCINFRLNPL----NVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSE 143
+ L+PL + A +L A + + VD F E AL ++
Sbjct: 76 LMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFV--ERALALLA---- 129
Query: 144 GLFKPPVLIVIGDETCDRAP-LEYALSKGVTEY-EKLLETGDPEFAWKPPRDEWQS---I 198
R P L++ L+ G LL F P
Sbjct: 130 -----------------RVPSLKHVLTLGPVPDGVDLLAAAAK-FGPAPLVAAALPPDIA 171
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
L YT GTT PKGV+ +HR+ M+ + W +L P+ H G F +L
Sbjct: 172 GLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPTL- 230
Query: 259 ALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318
GT ++L + + +AI E +T P ++ ++++ P T L + V G
Sbjct: 231 LRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRT-RDLSSLETVYYG 289
Query: 319 GSPPPPPILL-AMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVK 377
SP P L A+ + G YG +E T L + ++
Sbjct: 290 ASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITY---------LRKRDHDPDDPKRLTS 340
Query: 378 C-MCLEGLDV--LDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
C GL V LD + + +GE+ +RG +VM GY P+ EAF +G
Sbjct: 341 CGRPTPGLRVALLDED-GREVAQG--EVGEICVRGPLVMDGYWNRPEETAEAFRDG 393
|
Length = 524 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 9e-24
Identities = 63/237 (26%), Positives = 96/237 (40%), Gaps = 24/237 (10%)
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
L YTSGTT PKGV+ +H + V G+ V L P+ H G+ + L
Sbjct: 98 LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGLELPL 157
Query: 260 LCGTSVMLRQA-SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318
L G +V+L+ + I EHGVT A L ++ A + LP + G
Sbjct: 158 LLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAA-ADAAGPDLPSLRVFLCG 216
Query: 319 GSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNAR---- 373
G+P P + ++ G +V YG++E TV P + +A + R
Sbjct: 217 GAPVPRELARRAAEALGAKVVRAYGMTE-VPLVTVG-----TPDDPDDKRAATDGRPVPG 270
Query: 374 QGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
V+ ++D N +P GE+ +RG + GYL P E +G
Sbjct: 271 VEVR--------IVDDDGN-DVPPG--EEGELQVRGPQLFLGYLDPPDNTEAFTDDG 316
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-23
Identities = 108/434 (24%), Positives = 169/434 (38%), Gaps = 79/434 (18%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
FL +AA P R ++V+ + +TW++ R LA+AL+ + G + V S N M+
Sbjct: 12 FLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMF 71
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
E F GAV NFR P VA L A A + F A++
Sbjct: 72 ESMFAAFRLGAVWVPTNFRQTPDEVA-YLAEASGARAMICHADFPEHAAAVRAASPDLTH 130
Query: 145 LFKPPVLIVIGD-------ETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQS 197
++ IG E L ++ +++ DP W
Sbjct: 131 ------VVAIGGARAGLDYEALVARHLGARVANAAVDHD------DP--CW--------- 167
Query: 198 IALGYTSGTTANPK-GVLVSHRAAYLMSLNVV-LTWGMKEGAVYLWTLPIFHGNGWCFTW 255
+TSGTT PK VL + A++++ ++ L G E L P+ HG G
Sbjct: 168 --FFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAG----- 220
Query: 256 SLAALC-----GTSVML--RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTI-- 306
+ LC +V+L + ++ + H VTN P +L +V P D
Sbjct: 221 -IHQLCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDH 279
Query: 307 LPLPHVVNVNTGGSPPPPPILLAMSQK------GFRVTHVYGLSEINGPATVCAWNPNWD 360
L +V+ G+P + QK G + +GL E+ G TV P
Sbjct: 280 SSLRYVI---YAGAP-----MYRADQKRALAKLGKVLVQYFGLGEVTGNITVLP--PALH 329
Query: 361 SLPFEAQARLN----ARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGY 416
AR+ R G++ + + D + +P G+T GE+ + G V GY
Sbjct: 330 DAEDGPDARIGTCGFERTGME------VQIQDDEGR-ELPP-GET-GEICVIGPAVFAGY 380
Query: 417 LKNPKANEEAFANG 430
NP+AN +AF +G
Sbjct: 381 YNNPEANAKAFRDG 394
|
Length = 528 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 85/392 (21%), Positives = 138/392 (35%), Gaps = 98/392 (25%)
Query: 45 HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL 104
T+ + + RLA L + + G V++ N P ++ + GAV+ +
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVV----VPV 56
Query: 105 NPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPL 164
NP+N L H + ++ ++++G E D A
Sbjct: 57 NPMNREAELEH--------------ILNDS-------------GARVLIVGSELDDVA-- 87
Query: 165 EYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMS 224
+ YTSGTT PKG + +HR +
Sbjct: 88 ----------------------------------VIPYTSGTTGLPKGCMHTHRTVLATA 113
Query: 225 LNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCG-TSVMLRQASAKAIYKAIAEHG 283
G+ +V L LP+FH G + + G T V+L + +A +AI +
Sbjct: 114 AASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYR 173
Query: 284 VTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPI---LLAMSQKGFRVTHV 340
VT++ ++ ++ P L + V GG+ PP + L A++ G
Sbjct: 174 VTHWTNIVTMVVDLLA-HPRFADYDLSSLKVVGGGGAALPPAVAERLKALT--GLLYEEG 230
Query: 341 YGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGK 400
YGL+E + N K CL G+ V T P G+
Sbjct: 231 YGLTETHTCTH------------------FNPPDRPKPQCL-GIPVFGTDARVIDPETGE 271
Query: 401 -----TIGEVVMRGNMVMKGYLKNPKANEEAF 427
GE+V+RG V KGY P+A E+F
Sbjct: 272 ELPPGEEGEIVVRGPQVFKGYWNRPEATAESF 303
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 2e-22
Identities = 83/404 (20%), Positives = 139/404 (34%), Gaps = 59/404 (14%)
Query: 42 ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCIN 101
+ T+ + RLA+AL L G V++ PN P GA+ ++
Sbjct: 37 LFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVS 96
Query: 102 --FRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGL-FKPPVLIVIGDET 158
+ A + ++ D F K + + V++V
Sbjct: 97 PGLSAEAV--ADRIADLGPKVLIADDGTF----RNGKEIALLEDADAVLSSVVVVPRLGL 150
Query: 159 CDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHR 218
+E A K E+E L DP + L YTSGTT PKG++ SH
Sbjct: 151 WYDEAVEKASEK--FEFEPL-PADDP-------------LFLLYTSGTTGKPKGIVHSHG 194
Query: 219 AAYLMSLNVVLT----WGMKEGAVYLWTLPIFH--GNGWCFTWSLAALCGTSVMLRQA-- 270
YL + LT + G + + G + L A T+V+
Sbjct: 195 -GYL--VEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPL-ASGATTVLYDGRPF 250
Query: 271 -SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP-PEDTILPLPHVVNVNTGGSPPPPPILL 328
S + +++A+ ++ VT F +P L ++ E L V+ + G P
Sbjct: 251 YSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVL-GSAGEPLNPEAFEW 309
Query: 329 AMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLD 388
S G + +YG +E A P + L G + +D
Sbjct: 310 FYSALGVWILDIYGQTETGMGFI--AGRP--PVKNGSSGLPL---PGYA------VRRVD 356
Query: 389 TKTNQPIPADGKTIGEVVMRG--NMVMKGYLKNPKANEEAFANG 430
+ N P+P GE+V+R + Y +P+ +EA+
Sbjct: 357 DEGN-PVPPGV---GELVVRLPWPGMALTYWNDPERYKEAYFGR 396
|
Length = 528 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 20/233 (8%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL- 260
+TSGTT PKGV ++H+ + N+ + + L +P+FH +G + LA L
Sbjct: 9 HTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS-LLATLL 67
Query: 261 -CGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGG 319
G+ V + SA + IA++ VT + A P + ++ + P P + + +
Sbjct: 68 AGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPPRLRFIRSAS 127
Query: 320 SPPPPPILLAMSQKGFR--VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVK 377
+P PP +L + +K F V YG++E A A NP LP + + +
Sbjct: 128 APLPPAVLDRL-EKRFGVPVLEAYGMTE---AAHQIASNP----LPPLVRKPGSVGRPAG 179
Query: 378 CMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+ +LD P+P GE+V+RG V GYL NP+AN EAF +G
Sbjct: 180 V----EVAILDDDGR-PLPPG--QEGEIVIRGPNVTAGYLNNPEANREAFRDG 225
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 4e-22
Identities = 59/291 (20%), Positives = 100/291 (34%), Gaps = 30/291 (10%)
Query: 24 WFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83
E AA HP R ++++E + ++ + R R A + +G G V++L N P
Sbjct: 41 DVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEY 100
Query: 84 YEVHFGVPMTGAVLNCINFRL--NPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGK 141
G+ GAV+ +N + L ++ L +A + V ++ EEA
Sbjct: 101 LAAWLGLAKLGAVVALLNTQQRGAVLAHSLNL--VDAKHLIVGEELVEAFEEA------- 151
Query: 142 SEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALG 201
P + + P G + +
Sbjct: 152 -RADLARPPRLWVAGGDTLDDPE------GYEDLAAAAAGAPTT-----NPASRSGVTAK 199
Query: 202 ------YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255
YTSGTT PK ++SH + V LP++H G W
Sbjct: 200 DTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAW 259
Query: 256 SLAALCGTSVMLRQA-SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT 305
S G ++ LR+ SA + + + T F + ++N PP+ T
Sbjct: 260 SSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT 310
|
Length = 600 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-19
Identities = 89/419 (21%), Positives = 140/419 (33%), Gaps = 96/419 (22%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
L A HP R +VV + T+++ RLA+ L L IGPG V V PNV
Sbjct: 21 LAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVI 80
Query: 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY--FALAEEALKIMEGKSE 143
++F + GA+ + +EA + ++ F A A
Sbjct: 81 LYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADRFSGFDYAALA--------- 131
Query: 144 GLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYT 203
E + P + AL F +
Sbjct: 132 ------------RELLEELP-DVAL-----------------FQL--------------S 147
Query: 204 SGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHG---NGWCFTWSLAAL 260
GTT PK + +H + G+ G VYL LP H + +L A
Sbjct: 148 GGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLA- 206
Query: 261 CGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGS 320
GT V+ S + I VT+ P +LN + A D L + + GG+
Sbjct: 207 GGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQ-ADLSSLRVIQVGGA 265
Query: 321 PPPPPILLAM-----SQKGFRVTHVYGLSE----INGPATVCAWNPNWDSLPFEAQARLN 371
P P + + G + V+G++E + Q R
Sbjct: 266 PLSP----ELARRVEERLGCPLQQVFGMAEGLVNYTRLDDP-------PDVIMRTQGRP- 313
Query: 372 ARQGVKCMCLEGLD---VLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ D ++D + P+P G +GE++ RG ++GY + P+ N AF
Sbjct: 314 -------IS--PADEIRIVDDQGE-PVP-PG-EVGELLTRGPYTIRGYYRAPEHNARAF 360
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 9e-19
Identities = 84/385 (21%), Positives = 133/385 (34%), Gaps = 66/385 (17%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNP 106
TWQ LA AL I G+ V+++ N M + + GA + +N RL
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 107 LNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEY 166
L + L+ D L + D A Y
Sbjct: 61 NERTNQLEDLDVQLLLTDSL------------------LEEKDFQADSLDRI--EAAGRY 100
Query: 167 ALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLN 226
S L + Q L +TSGTT PK V + R Y ++
Sbjct: 101 ETS---------LSASFN--------MD-QIATLMFTSGTTGKPKAVPHTFRNHYASAVG 142
Query: 227 VVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTN 286
G E +L +LP++H +G + + G ++ + + + IA VT+
Sbjct: 143 SKENLGFTEDDNWLLSLPLYHISGLSILFR-WLIEGATLRIVDKFN-QLLEMIANERVTH 200
Query: 287 FCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEI 346
P LN +++ + L + GGS P P++ Q G + YG++E
Sbjct: 201 ISLVPTQLNRLLDEGGHNENLRK-----ILLGGSAIPAPLIEEAQQYGLPIYLSYGMTET 255
Query: 347 NGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKT-IGEV 405
+ V P L+AR V L G ++ I D K GE+
Sbjct: 256 C--SQVTTATPEM----------LHARPDVG-RPLAGREI-------KIKVDNKEGHGEI 295
Query: 406 VMRGNMVMKGYLKNPKANEEAFANG 430
+++G +MKGYL + G
Sbjct: 296 MVKGANLMKGYLYQGELTPAFEQQG 320
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 27/254 (10%)
Query: 39 VVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98
+ + T+ + R RLA L L + G V++L N P +EV++ +G
Sbjct: 5 MAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYT 64
Query: 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDET 158
IN+ L +A I+ + A ++ V A E + G+ P +L+V G
Sbjct: 65 PINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELP---AGV--PLLLVVAGPVP 119
Query: 159 CDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVS-- 216
G YE+ L P DE + Y+SGTT PKG+
Sbjct: 120 ------------GFRSYEEALAAQPDT----PIADETAGADMLYSSGTTGRPKGIKRPLP 163
Query: 217 ----HRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASA 272
A +M + +VYL P++H F S AL GT V++ + A
Sbjct: 164 GLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDA 223
Query: 273 KAIYKAIAEHGVTN 286
+ I + VT+
Sbjct: 224 EEALALIERYRVTH 237
|
Length = 502 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 2e-18
Identities = 67/276 (24%), Positives = 110/276 (39%), Gaps = 16/276 (5%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
L R AT+ + ++ T + LA+ L +L + G V++ + N E
Sbjct: 13 LTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72
Query: 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGL 145
V G ++ +N+R + A++A++ V E E
Sbjct: 73 WLLAVACAGGIVAPLNYRWS-------FEEAKSAMLLVRPVMLVTDETCSSWYEELQNDR 125
Query: 146 FKPPVLIVIGDETCDRAPLEYALSKGVTEYEK--LLETGDPEFAWKPPRDEWQSIAL-GY 202
+ V + + S TE K L T + ++AW P L +
Sbjct: 126 LPSLMWQVFLESPSSSVFIF-LNSFLTTEMLKQRALGTTELDYAWAP-----DDAVLICF 179
Query: 203 TSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCG 262
TSGTT PKGV +SH A + SL + G E VYL T P+ H G ++ +
Sbjct: 180 TSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGA 239
Query: 263 TSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIV 298
V+L + AKA +AI +H VT+ P ++ ++
Sbjct: 240 CHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLI 275
|
Length = 563 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 3e-18
Identities = 98/415 (23%), Positives = 149/415 (35%), Gaps = 53/415 (12%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
L R A +P R +V+ +T+ + + A AL+ + G V+++ N +
Sbjct: 27 LARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLD 86
Query: 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGL 145
V G GA+ IN L + IL ++ A L+ V+ A E A G
Sbjct: 87 VFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAAD-------PGD 139
Query: 146 FKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSG 205
P + ++ P + L A P D + A+ YTSG
Sbjct: 140 LPLPAVWLLDAPASVSVPAGW----STAPLPPLDAPAPA--AAVQPGD---TAAILYTSG 190
Query: 206 TTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCG-TS 264
TT KGV H Y N + V TLP+FH N + A L G T
Sbjct: 191 TTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFFQALLAGATY 249
Query: 265 VMLRQASAKAIYKAIAEHGVTNF----CAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGS 320
V+ + SA + A+ HG T I+L+ A D H V V G
Sbjct: 250 VLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQ--PARESDR----AHRVRVALGPG 303
Query: 321 PPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCM 379
P + A ++ G + YG +E N A + R G
Sbjct: 304 -VPAALHAAFRERFGVDLLDGYGSTETNFVI---------------AVTHGSQRPGSMGR 347
Query: 380 CLEGLD--VLDTKTNQPIPADGKTIGEVVMRGN---MVMKGYLKNPKANEEAFAN 429
G + V+D + +Q +P GE+++R + GY P+ EA+ N
Sbjct: 348 LAPGFEARVVD-EHDQELPDG--EPGELLLRADEPFAFATGYFGMPEKTVEAWRN 399
|
Length = 542 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 4e-18
Identities = 113/444 (25%), Positives = 171/444 (38%), Gaps = 87/444 (19%)
Query: 26 LERAATVHPTRKSVVY--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83
+ P R+++V ++ YTW+Q RLA L L + PG V + +PN
Sbjct: 24 FDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEW 83
Query: 84 YEVHFGVPMTGAVLNCIN--FRLNPLNVAIILGHAEAALVFV-----DQQYFALAEEALK 136
F GA+L IN +R + L A LG + V Y A+ +E
Sbjct: 84 LLTQFATARIGAILVNINPAYRASELEYA--LGQSGVRWVICADAFKTSDYHAMLQE--- 138
Query: 137 IMEGKSEGLFKPPVLIVIGDETCDRAP-------LEYALSKGVTEYEKLLETGD---PE- 185
++ G +EG +P L C+R P L A G + +L G+ E
Sbjct: 139 LLPGLAEG--QPGALA------CERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREA 190
Query: 186 -FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLP 244
+ D I + YTSGTT PKG +SH V + G+ E +P
Sbjct: 191 LAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVP 250
Query: 245 IFHGNGWCFTWSLAAL-CGT--SVMLRQASA---KAIYKAIAEHGVTNFCAAPIVLNSIV 298
++H CF LA L C T + ++ A A +A+ E T P + + +
Sbjct: 251 LYH----CFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAEL 306
Query: 299 NAPPEDTILPLPHVVNVNTG---GSPPPPPIL------LAMSQKGFRVTHVYGLSEINGP 349
+ P + ++ TG G+P P ++ + M++ V YG++E +
Sbjct: 307 DHPQRGNF----DLSSLRTGIMAGAPCPIEVMRRVMDEMHMAE----VQIAYGMTETSPV 358
Query: 350 ATVCAWNPNWDSLP--FEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKT-----I 402
+ D L E R VK V+D DG T I
Sbjct: 359 SLQTTAA---DDLERRVETVGRTQPHLEVK--------VVD--------PDGATVPRGEI 399
Query: 403 GEVVMRGNMVMKGYLKNPKANEEA 426
GE+ RG VMKGY NP+A E+
Sbjct: 400 GELCTRGYSVMKGYWNNPEATAES 423
|
Length = 558 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 4e-18
Identities = 64/279 (22%), Positives = 100/279 (35%), Gaps = 39/279 (13%)
Query: 14 PANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAV 73
P TP ++ A + + VV T+++ +R RLA L + G V
Sbjct: 3 PGIHAQTTP----DKPAVIMASTGEVV------TYRELDERSNRLAHLFRSLGLKRGDHV 52
Query: 74 SVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEE 133
++ N EV + +G C+N L P A I+ + A + +A
Sbjct: 53 AIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARA 112
Query: 134 ALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRD 193
LK G L++ GD +G Y + + G P P D
Sbjct: 113 LLKQCPGVR------HRLVLDGDGE----------LEGFVGYAEAVA-GLPA---TPIAD 152
Query: 194 EWQSIALGYTSGTTANPKGVL-------VSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIF 246
E + Y+SGTT PKG+ L + WG + VYL P++
Sbjct: 153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRL--WGFRSDMVYLSPAPLY 210
Query: 247 HGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVT 285
H + L GT +++ A+ I E+GVT
Sbjct: 211 HSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVT 249
|
Length = 511 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 22/236 (9%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
+ YTSGTT PKGV+++H + +V W V L LP+ H +G
Sbjct: 92 LIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNALHCP 151
Query: 259 ALCGTSV-MLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPL-PHVVNVN 316
G SV L + + +T F P + ++ D + +
Sbjct: 152 LWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAARNLRLF 211
Query: 317 TGGSPP-PPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQ 374
GS P P+L ++ G + YG++E G A S P + + R
Sbjct: 212 VSGSAALPVPVLERWEERTGHTLLERYGMTET-GMAL---------SNPLDGE----RRP 257
Query: 375 GVKCMCLEGLDV--LDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428
G + L G++V +D +P+ A +GE+ +RG V Y P+A EAF
Sbjct: 258 GTVGLPLPGVEVRIVDEDGGEPLAAG--EVGEIQVRGPNVFSEYWNKPEATAEAFT 311
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 63/275 (22%), Positives = 110/275 (40%), Gaps = 40/275 (14%)
Query: 39 VVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98
+ Y+ T+ + + R +AL +L I V ++ + P +G GAV
Sbjct: 24 LYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPV 83
Query: 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDET 158
IN L P + L + A ++ + ++ + + + AL + +IV+G
Sbjct: 84 PINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPAL-------QKDPHLRHVIVVGGAG 136
Query: 159 CDRAPLEYALSKGVTEYEKLLETGDPEFAWKPP-RDE---WQSIALGYTSGTTANPKGVL 214
ALS Y +L+ T E D+ W Y+SG+T PKGV+
Sbjct: 137 ------PGALS-----YAQLIATAAEELEAAATSADDMAFWL-----YSSGSTGRPKGVV 180
Query: 215 VSHRAAYLMSLNV---VLTWGMKEGAVYLWTLPIFH----GNGWCFTWSLAALCGTSVML 267
H + + VL G+ E V +F GNG F S+ A T+V++
Sbjct: 181 HLHHDMLVTAEAYAKNVL--GITEDDVVFSAAKLFFAYGLGNGLYFPLSVGA---TTVLM 235
Query: 268 -RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP 301
+ + A++ I + T F P + +++ AP
Sbjct: 236 PERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAP 270
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 102/423 (24%), Positives = 168/423 (39%), Gaps = 62/423 (14%)
Query: 25 FLERAATVHPTRKSVV------YESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSP 78
L+ P + +V + +T+++ R+A L++L +G G VS P
Sbjct: 29 DLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLP 88
Query: 79 NVPAMYEVHFGVPMTGAVLNCIN--FRLNPLNVAIILGHAEAALVFVDQQYFALAEEALK 136
N ++ GAVLN + FR L + +L HAE+ ++ V + + A+
Sbjct: 89 NWWEFTVLYLACSRIGAVLNPLMPIFREREL--SFMLKHAESKVLVVPKTFRGFDHAAM- 145
Query: 137 IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQ 196
L ++V+G + G +E LL T AW+ D
Sbjct: 146 -ARRLRPELPALRHVVVVGGD-------------GADSFEALLITP----AWEQEPDAPA 187
Query: 197 SIA-----------LGYTSGTTANPKGVLVSHRAAYLMSLNVVLT--WGMKEGAVYLWTL 243
+A L YTSGTT PKGV+ H A LM+ V G+ V L
Sbjct: 188 ILARLRPGPDDVTQLIYTSGTTGEPKGVM--HTANTLMANIVPYAERLGLGADDVILMAS 245
Query: 244 PIFHGNGWCFTWSLAALCGTSVMLRQA--SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP 301
P+ H G+ + + + G + +L+ A+A + I GVT A+ L + A
Sbjct: 246 PMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAA-ELIRTEGVTFTMASTPFLTDLTRAV 304
Query: 302 PEDTILPLPHVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWD 360
E P+ + G+P P ++ G ++ +G++E NG T+
Sbjct: 305 KESG-RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTE-NGAVTL-------- 354
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
+ + R + G +E + V+D P+PA IG + +RG GYLK P
Sbjct: 355 TKLDDPDERASTTDGCPLPGVE-VRVVDA-DGAPLPAG--QIGRLQVRGCSNFGGYLKRP 410
Query: 421 KAN 423
+ N
Sbjct: 411 QLN 413
|
Length = 547 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 3e-17
Identities = 70/246 (28%), Positives = 96/246 (39%), Gaps = 53/246 (21%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC 261
YTSGTT NPKGV+++HR + ++ + G L LP+ H
Sbjct: 95 YTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAH--------VFEQRL 146
Query: 262 GTSVMLRQ-------ASAKAIYKAIAEHGVTNFCAAPIVLNSIVN--------APPE--- 303
G + L S + + + + E T F A P V I A P
Sbjct: 147 GEYLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRK 206
Query: 304 --DTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDS 361
L + +GG+P PP +L G + YGL+E +G ATV N D
Sbjct: 207 LFRWALGGGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATV---NRPGDI 263
Query: 362 LPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPK 421
R G L G++V I D GE+++RG VMKGY KNP+
Sbjct: 264 -----------RIGTVGKPLPGVEVR-------IAED----GEILVRGPNVMKGYYKNPE 301
Query: 422 ANEEAF 427
A EA
Sbjct: 302 ATAEAL 307
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 5e-17
Identities = 100/402 (24%), Positives = 167/402 (41%), Gaps = 60/402 (14%)
Query: 42 ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCIN 101
+ +++++ R R+A L++L +G G VS PN ++ GAVLN +
Sbjct: 50 AVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLM 109
Query: 102 --FRLNPLNVAIILGHAEAALVFVDQQYFALAEEA-LKIMEGKSEGLFKPPVLIVIGDET 158
FR L + +L HA++ + V + A + ++ K L + V+++ GD
Sbjct: 110 PIFREREL--SFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQ--VVVIDGD-- 163
Query: 159 CDRAPLEYALSKGVTEYEKLLETGD----PEFAW--KPPRDEWQSIA-LGYTSGTTANPK 211
G ++++L T + P+ A PR + L YTSGTT PK
Sbjct: 164 ------------GDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPK 211
Query: 212 GVLVSHRAAYLMS--LNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQ 269
GV+ H A L S + G V L P+ H G+ + + + + +L+
Sbjct: 212 GVM--HTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQD 269
Query: 270 A--SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL 327
A+A + I E GVT A+ L + A E P+P + G+P P ++
Sbjct: 270 IWNPARAA-ELIRETGVTFTMASTPFLTDLCRAVKESG-APVPSLFTFLCAGAPIPGILV 327
Query: 328 -LAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDV 386
A G + +G++E NG TV + P +A + + G L G++V
Sbjct: 328 ERAWELLGALIVSAWGMTE-NGAVTV--------TEPDDALEKASTTDGRP---LPGVEV 375
Query: 387 LDTKTNQPIPADGKT-----IGEVVMRGNMVMKGYLKNPKAN 423
+ I A+G G +++RG GYLK P N
Sbjct: 376 ------KVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLN 411
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 5e-17
Identities = 60/247 (24%), Positives = 94/247 (38%), Gaps = 42/247 (17%)
Query: 202 YTSGTTANPKGVLVSH-RAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL 260
YTSGTT PK ++SH R ++ L + +YL LP++H N WS A
Sbjct: 88 YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYL-CLPLYHSNALTVGWSSALA 146
Query: 261 CGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP--PEDTILPLPHVVNVNT 317
G S+ L R+ SA + + +G T F + ++N P P+D PL ++
Sbjct: 147 AGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRDHPLRKIIGNGL 206
Query: 318 GGSPPPPPILLAMSQKGFRVTHV---YGLSEINGPATVCAWNPNWDSLPFEAQARLNARQ 374
P I ++ F V + YG +E N N + P A RL
Sbjct: 207 R-----PDIWDEFKER-FGVPRIVEFYGSTEGNVGFI------NLFNKP-GAVGRLPPAA 253
Query: 375 G--VKCMCLEGLDVLDTKTNQPI-PADGK-------TIGEVVMRGNMVMK--GYLKNPKA 422
VK D +T +PI A+G +G ++ GY +
Sbjct: 254 IAVVKY---------DVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEAT 304
Query: 423 NEEAFAN 429
++ +
Sbjct: 305 EKKILRD 311
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 100/389 (25%), Positives = 144/389 (37%), Gaps = 43/389 (11%)
Query: 53 QRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAII 112
RLA+ L+ + G V+V PN + GA + +N R VA I
Sbjct: 43 ALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHI 102
Query: 113 LGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172
LG A + V + + + I+ P I + D+ D P A + G
Sbjct: 103 LGRGRARWLVVWPGFKGI--DFAAILAAVPPDALPPLRAIAVVDDAADATP---APAPGA 157
Query: 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGY-TSGTTANPKGVLVSHRAAYLMSLN--VVL 229
L P A + + AL + TSGTT+ PK LV HR A L+ +
Sbjct: 158 RVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPK--LVLHRQATLLRHARAIAR 215
Query: 230 TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCG--TSVMLRQASAKAIYKAIAEHGVTNF 287
+G GAV L LP G F+ L AL G V A +A+ H VT+
Sbjct: 216 AYGYDPGAVLLAALPFCGVFG--FSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHT 273
Query: 288 CAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEI 346
+L I++ E P P L A++ +G +T +YG SE+
Sbjct: 274 FGNDEMLRRILDTAGERA--DFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEV 331
Query: 347 NGPATVCAWNPNWD--------SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPAD 398
A V P +AR+ AR D + +P D
Sbjct: 332 Q--ALVALQPATDPVSVRIEGGGRPASPEARVRAR--------------DPQDGALLP-D 374
Query: 399 GKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
G+ GE+ +R +M+GYL NP A A
Sbjct: 375 GE-SGEIEIRAPSLMRGYLDNPDATARAL 402
|
Length = 540 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-16
Identities = 102/439 (23%), Positives = 159/439 (36%), Gaps = 83/439 (18%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
E A P R ++V + T+ + +R RLA L +GPG V + + N E
Sbjct: 9 FEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVE 68
Query: 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGL 145
G AV +N+R + +L ++A + ++++ E L L
Sbjct: 69 AMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVL-------PRL 121
Query: 146 FKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPE--FAWKPPRDEWQSIALGYT 203
K L+V+ D + + L G +YE L G PE F + P D + L YT
Sbjct: 122 PKLRTLVVVEDGSGN------DLLPGAVDYEDALAAGSPERDFGERSPDD----LYLLYT 171
Query: 204 SGTTANPKGVLVSHRAAYLMSLN-------------VVLTWGMKEGAVYLW--TLPIFHG 248
GTT PKGV+ + + L L G P+ HG
Sbjct: 172 GGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHG 231
Query: 249 NGWCFTWS-LAALC--GTSVMLRQAS--AKAIYKAIAEHGVT------NFCAAPIVLNSI 297
G W+ AAL T V+L A +++ I V + A P+ L+++
Sbjct: 232 AG---QWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPL-LDAL 287
Query: 298 VNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFR-------VTHVYGLSE--ING 348
P D L + + +GG+ P + ++ +T G SE G
Sbjct: 288 EARGPYD----LSSLFAIASGGALFSPSV-----KEALLELLPNVVLTDSIGSSETGFGG 338
Query: 349 PATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMR 408
TV + R VLD N P G+ IG + R
Sbjct: 339 SGTVAKGAVH------TGGPRFTIGPRTV--------VLDEDGNPVEPGSGE-IGWIARR 383
Query: 409 GNMVMKGYLKNPKANEEAF 427
G++ + GY K+P+ E F
Sbjct: 384 GHIPL-GYYKDPEKTAETF 401
|
Length = 533 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 2e-16
Identities = 59/243 (24%), Positives = 94/243 (38%), Gaps = 43/243 (17%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF---TWSL- 257
YTSG+T PKGV+V HR + + +G+ G L F W +
Sbjct: 100 YTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASF------SFDASVWEIF 153
Query: 258 AALC--GTSVMLRQA---SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHV 312
L T V+ +A+ + + EH +T P +L ++++A + L V
Sbjct: 154 PPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDALEPAALPSLRLV 213
Query: 313 VNVNTGGSPPPPPIL--LAMSQKGFRVTHVYGLSEINGPATVCA--WNPNWDSLPFEA-- 366
+ GG P ++ G R+ + YG +E TV + D L +
Sbjct: 214 I---VGGEALPAELVRRWRELFPGARLVNAYGPTE----TTVDVTYHEVDPDDLDGGSVP 266
Query: 367 --QARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424
+ N R + VLD +P+P G GE+ + G V +GYL P+
Sbjct: 267 IGRPIANTR----------VYVLDED-LRPVP-VG-VPGELYIGGAGVARGYLNRPELTA 313
Query: 425 EAF 427
E F
Sbjct: 314 ERF 316
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 4e-16
Identities = 92/438 (21%), Positives = 155/438 (35%), Gaps = 66/438 (15%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLAS 60
+ + L + L+ E A P ++V + T+ + R RLA
Sbjct: 210 PSEREVWNALAAPIPLRLTIHLLF--EEQAATTPDAVALVRGGQQLTYAELDARANRLAR 267
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
L L +GPG V++L+ + V GA ++ +A IL + L
Sbjct: 268 LLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTL 327
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
+ P L + D A E +
Sbjct: 328 LLTQAHLRVDDVGL--------------PGLAL------DDALSEIPDT----------- 356
Query: 181 TGDPEFAWKPPRDEWQSIALG-YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVY 239
DP +A YTSG+T PKGV + HRA + + +G+
Sbjct: 357 --DPIPQALLGDA----LAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRV 410
Query: 240 L-WTLPIFHGNGWCFTWSLAALCGTSVMLR----QASAKAIYKAIAEHGVTNFCAAPIVL 294
L F + + +L L G ++L Q A+ + + G+T P++L
Sbjct: 411 LALASLSFDASVFEIFGAL--LEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLL 468
Query: 295 NSIVNAPPE-DTILPLPHVVNVNTGGSPPPPPILLAMSQKGF---RVTHVYGLSEINGPA 350
++ A D I P + + +GG P ++ + Q R+ ++YG +E A
Sbjct: 469 RLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTE----A 524
Query: 351 TVCAWNPNWDSLPFEAQARLNARQGV-KCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409
T+ D+ F A L +R + + + L +LD +P+P G GE+ + G
Sbjct: 525 TL-------DAPSFPISAELESRVPIGRPVANTQLYILDQ-GLRPLP-LG-VPGELYIAG 574
Query: 410 NMVMKGYLKNPKANEEAF 427
+ GYL P E F
Sbjct: 575 LGLALGYLNRPDLTAERF 592
|
Length = 642 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 5e-16
Identities = 60/219 (27%), Positives = 88/219 (40%), Gaps = 42/219 (19%)
Query: 25 FLERAATVHPTRKSVVYESKH--YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA 82
L+R A +P R+++VY + +T+++ + LA L L I G V + +PNVP
Sbjct: 21 LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80
Query: 83 MYEVHFGVPMTGAVLNCIN--FRLNPLNVAIILGHAEA-ALVFVDQ----QYFALAEEA- 134
F GA+L IN +RL+ L A L + AL+ D Y A+ E
Sbjct: 81 WVLTQFATAKIGAILVTINPAYRLSELEYA--LNQSGCKALIAADGFKDSDYVAMLYELA 138
Query: 135 --LKIMEGKSEGLFKPPVL---IVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWK 189
L E + P L I +GDE G+ +++LL G
Sbjct: 139 PELATCEPGQLQSARLPELRRVIFLGDEKHP----------GMLNFDELLALGR-----A 183
Query: 190 PPRDEWQSIALG----------YTSGTTANPKGVLVSHR 218
E + YTSGTT PKG ++HR
Sbjct: 184 VDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHR 222
|
Length = 559 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 68/242 (28%), Positives = 91/242 (37%), Gaps = 30/242 (12%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
A +T GTT PK SHR + L G+ G V L LP+FH G LA
Sbjct: 6 AYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGG-AIVTGLA 64
Query: 259 ALC-GTSVMLRQASA-------KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT-ILPL 309
L G +V+L S +K + + VT A P VL +++ P D I L
Sbjct: 65 PLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDADISSL 124
Query: 310 PHVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQA 368
+ + TG +P P + G V YG++E G V A NP P +
Sbjct: 125 RYAL---TGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTG---VSAINPR--GGPRRPGS 176
Query: 369 ---RLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEE 425
RL V+ LD +G + +RG V GYL N N
Sbjct: 177 VGLRL-PYTRVRVA------KLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-NDAHNAG 228
Query: 426 AF 427
A
Sbjct: 229 AR 230
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 7e-16
Identities = 91/398 (22%), Positives = 137/398 (34%), Gaps = 75/398 (18%)
Query: 51 TY----QRCRRLASAL-SQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
TY +R RLA L + +GPG V+VL + V GA +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAA--YV----- 53
Query: 106 PLN-------VAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDET 158
PL+ +A IL A A L+ D + L P L + D
Sbjct: 54 PLDPAYPAERLAFILEDAGARLLLTDSALASRLAGL-----VLPVILLDPLELAALDDAP 108
Query: 159 CDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHR 218
P +G + A+ + YTSG+T PKGV+V+HR
Sbjct: 109 APPPPDAP--------------SGPDDLAY-----------VIYTSGSTGRPKGVVVTHR 143
Query: 219 --AAYLMSLNVVLTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVM---LRQASA 272
L L +G+ L + F + +L A V + A
Sbjct: 144 SLVNLLAWL--ARRYGLDPDDRVLQFASLSFDASVEEIFGALLAGATLVVPPEDEERDDA 201
Query: 273 KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ 332
+ IAEH VT P +L + A P L + V GG P ++
Sbjct: 202 ALLAALIAEHPVTVLNLTPSLLALLAAALPPA----LASLRLVILGGEALTPALVDRWRA 257
Query: 333 KG--FRVTHVYGLSEINGPATV-CAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDT 389
+G R+ ++YG +E TV + + + + L VLD
Sbjct: 258 RGPGARLINLYGPTE----TTVWSTATLVDPDDAPRE-SPVPIGRPLANT---RLYVLD- 308
Query: 390 KTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+P+P +GE+ + G V +GYL P+ E F
Sbjct: 309 DDLRPVPVGV--VGELYIGGPGVARGYLNRPELTAERF 344
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 1e-15
Identities = 99/451 (21%), Positives = 159/451 (35%), Gaps = 81/451 (17%)
Query: 25 FLERAATVHPTRKSVVY--------ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVL 76
L RAA HP ++ + + +T+ + R A+ L L +GPG V+ L
Sbjct: 30 LLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFL 89
Query: 77 SPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV-----FVDQQYFALA 131
PN+P + +G G N IN L P +A +L A A ++ F +
Sbjct: 90 LPNLPETHFALWGGEAAGIA-NPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKV 148
Query: 132 EEALKIME--------GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL--ET 181
E L + + L P L V + + +++ L +
Sbjct: 149 AEVLAALPELRTVVEVDLARYLPGPKRLAV--------PLIRRKAHARILDFDAELARQP 200
Query: 182 GDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRA----AYLMSLNVVLTWGMKEGA 237
GD F+ +P + A +T GTT PK +H A+L +L + G+ G
Sbjct: 201 GDRLFSGRPIGPD-DVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL----GLGPGD 255
Query: 238 VYLWTLPIFHGNGWCFTWSLAALC-GTSVML------RQASA-KAIYKAIAEHGVTNFCA 289
LP+FH N LA L G V+L R +K + + +
Sbjct: 256 TVFCGLPLFHVNA-LLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSG 314
Query: 290 APIVLNSIVNAPPEDT-ILPLPHVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEIN 347
P V +++ P + I L + + G +P P + G R+ YGL+E
Sbjct: 315 VPTVYAALLQVPVDGHDISSLRYAL---CGAAPLPVEVFRRFEAATGVRIVEGYGLTE-- 369
Query: 348 GPAT-VCAWNP-------NWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADG 399
AT V + NP L Q V+ + +LD
Sbjct: 370 --ATCVSSVNPPDGERRIGSVGLRLPYQR-------VRVV------ILDDAGRYLRDCAV 414
Query: 400 KTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+G + + G V GYL N+ +
Sbjct: 415 DEVGVLCIAGPNVFSGYL-EAAHNKGLWLED 444
|
Length = 632 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-15
Identities = 62/277 (22%), Positives = 105/277 (37%), Gaps = 21/277 (7%)
Query: 29 AATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88
AA P R +++ E T+ + ++ LA L L + G V+VL+ N +
Sbjct: 58 AARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALY 117
Query: 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKP 148
GA + +N + +A + + D +E ++ L +
Sbjct: 118 AAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYD-------DEFTDLLSALPPDLGRL 170
Query: 149 PVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTA 208
D+ + L+ KPP+ I + TSGTT
Sbjct: 171 RAWGGNPDDDEPSGS-------TDETLDDLIAGSSTAPLPKPPKPG--GIVI-LTSGTTG 220
Query: 209 NPKGVLVSHRAAYLMSLNVVLTW-GMKEGAVYLWTLPIFHGNGW-CFTWSLAALCGTSVM 266
PKG + L L +L+ + G L P+FH GW T ++A L T V+
Sbjct: 221 TPKGAPRPEPSP-LAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMA-LGSTVVL 278
Query: 267 LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE 303
R+ +A + IA+H T P++L+ I++ PE
Sbjct: 279 RRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPE 315
|
Length = 549 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 70/266 (26%), Positives = 101/266 (37%), Gaps = 24/266 (9%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
L A +P R +V+ + ++ + QR RLA+ L +L I PG V V PNV Y
Sbjct: 34 LTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYI 93
Query: 86 VHFGVPMTGA--VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEAL-KIMEGKS 142
F + G VL + R + L EAAL+ V +Q+ + + K
Sbjct: 94 TFFALLRLGVAPVLALPSHRASELGAFA--SQIEAALLIVARQHSGFDYRPFARELVAKH 151
Query: 143 EGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGY 202
L +IV G E + LE AL F PP D +
Sbjct: 152 PTL---RHVIVAG-EAEHPSVLEAALC-----------HPAGLFTPAPPADAGEVAFFQL 196
Query: 203 TSGTTANPKGVLVSHRA-AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC 261
+ GTT PK + +H Y + + + + VYL LP H +L
Sbjct: 197 SGGTTGTPKLIPRTHNDYYYSVRASAEICG-FDQQTVYLCALPAAHNFPLSSPGALGVFL 255
Query: 262 --GTSVMLRQASAKAIYKAIAEHGVT 285
GT V+ S + + I HGVT
Sbjct: 256 AGGTVVLAPDPSPELCFPLIERHGVT 281
|
Length = 542 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-15
Identities = 90/412 (21%), Positives = 142/412 (34%), Gaps = 81/412 (19%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
YTW Q + RR+A+AL L + PG +++LS N + M G V + L
Sbjct: 7 YTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLT 66
Query: 106 PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165
+ +L H++A +FV L + G+ P L I
Sbjct: 67 AETIRYVLEHSDAKALFVG---------KLDDWDAMKAGV--PEGLPTIILFPYSTLKDH 115
Query: 166 YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL 225
Y + E L PE P D + YTSGTT PKGV++S A +
Sbjct: 116 YKWDDLLAATEPLQGRPLPE-----PEDLATIV---YTSGTTGQPKGVMLSFGAFAFAAQ 167
Query: 226 NVVLTWGMKEGAVYLWTLP--------------IFHGNGWCFTWSLAALCGTSVMLRQAS 271
+ G+ L LP ++ G F SL L++A
Sbjct: 168 GTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLDTFAAD---LQRAR 224
Query: 272 A--------------KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
+ I + + PI L+S+V L L +
Sbjct: 225 PTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPI-LSSLV-KKKILKGLGLDQARLAGS 282
Query: 318 GGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARL--NARQG 375
G +P PP ++ + G + YG++E +T+ + P + + G
Sbjct: 283 GAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTL--------NYPGDRRIGTVGKPIPG 334
Query: 376 VKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
V+ E GE+++R +M GY K+P+ EAF
Sbjct: 335 VELKISE-------------------DGEILIRSPGLMSGYYKDPEKTAEAF 367
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 106/412 (25%), Positives = 161/412 (39%), Gaps = 46/412 (11%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
LE AA P ++V+ + T+ +R LAS L L + G V++
Sbjct: 6 LEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVT 65
Query: 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGL 145
FG + G V IN L VA IL L+ + L AL G
Sbjct: 66 AMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP-------GC 118
Query: 146 FKPPVLIVIGDETCDR--APLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQS--IALG 201
LI++GD P E S + KLL GD + PP S A+
Sbjct: 119 HDLRTLIIVGDPAHASEGHPGEEPAS-----WPKLLALGDAD----PPHPVIDSDMAAIL 169
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC 261
YTSG+T PKGV++SHR + +V + L LP+ G+ + +
Sbjct: 170 YTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVG 229
Query: 262 GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA--PPEDTILPLPHVVNV-NTG 318
T V+ + + KA+ +HG+T A P + + P P + + N+G
Sbjct: 230 ATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAA----PSLRYLTNSG 285
Query: 319 GSPPPPPILLAMSQKGF---RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQG 375
G+ P L+ + R+ +YGL+E A+ + LP E R G
Sbjct: 286 GA--MPRATLSRLRSFLPNARLFLMYGLTE--------AFRSTY--LPPEEVDRRPDSIG 333
Query: 376 VKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
K + + VL ++ P + GE+V RG +V GY +P+ E F
Sbjct: 334 -KAIPNAEVLVLREDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERF 381
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 8e-15
Identities = 71/295 (24%), Positives = 112/295 (37%), Gaps = 39/295 (13%)
Query: 53 QRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAII 112
QR R A L+ L + PG V++L N A +E + GA +N+ P +A I
Sbjct: 19 QRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYI 78
Query: 113 LGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALS--- 169
L + A ++ AL P + V+ T Y +S
Sbjct: 79 LEDSGARVLIAHADLLHGLASAL------------PAGVTVLSVPTPPEIAAAYRISPAL 126
Query: 170 ----KGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGV-----LVSHRAA 220
G ++E L +P + P Q ++ YTSGTT +PKGV AA
Sbjct: 127 LTPPAGAIDWEGWLAQQEP---YDGPPVP-QPQSMIYTSGTTGHPKGVRRAAPTPEQAAA 182
Query: 221 YLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIA 280
L +G+K G L T P++H + L G V+ + + + + I
Sbjct: 183 A--EQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIE 240
Query: 281 EHGVTNFCAAPIVLNSIVNAPPE-----DTILPLPHVVNVNTGGSPPPPPILLAM 330
H +T+ P + ++ P E D L HV++ +P P + AM
Sbjct: 241 RHRITHMHMVPTMFIRLLKLPEEVRAKYDVS-SLRHVIH---AAAPCPADVKRAM 291
|
Length = 509 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 8e-15
Identities = 104/453 (22%), Positives = 167/453 (36%), Gaps = 103/453 (22%)
Query: 25 FLERAATVHPTRKSVV-------YESKHY---TWQQTYQRCRRLASALSQLSIGPGTAVS 74
L RAA P + +V Y ++ + R +A L+ IG G
Sbjct: 11 HLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAV 70
Query: 75 VLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEA 134
++ + + F + GAV ++ + N+ L A+ F+ A A
Sbjct: 71 LMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPD-AFIGI---PKAHLA 126
Query: 135 LKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL---ETGDPEFAWKPP 191
++ G KP V ++ T L G T LL A P
Sbjct: 127 RRLF-----GWGKPSVRRLV---TVGGR-----LLWGGTTLATLLRDGAAAPFPMADLAP 173
Query: 192 RDEWQSIALGYTSGTTANPKGVLVSHR--AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGN 249
D A+ +TSG+T PKGV+ +H A + +L +G++ G + L T P+F
Sbjct: 174 DDM---AAILFTSGSTGTPKGVVYTHGMFEAQIEALRE--DYGIEPGEIDLPTFPLF--- 225
Query: 250 GWCFTWSL--AALCGTSVM-----LRQASA--KAIYKAIAEHGVTNFCAAPIVLNSIVNA 300
+L AL TSV+ R A+ ++ AI +GVTN +P +L +
Sbjct: 226 ------ALFGPALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRY 279
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ---KGFRVTHVYGLSEINGPATVCAWNP 357
E + LP + V + G+P P ++ + YG +E
Sbjct: 280 -GEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATE------------ 326
Query: 358 NWDSLP---FEAQARLNA-----RQG--------VKCMCLEGLDVLDTKTNQPIP----- 396
+LP E++ L A G V + + + + D PIP
Sbjct: 327 ---ALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDA----PIPEWDDA 379
Query: 397 ---ADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426
A G+ IGE+V+ G MV + Y P+A A
Sbjct: 380 LRLATGE-IGEIVVAGPMVTRSYYNRPEATRLA 411
|
Length = 552 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 94/388 (24%), Positives = 147/388 (37%), Gaps = 68/388 (17%)
Query: 58 LASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHA 116
+A+ L + + G V +L PN + V G ++ +N + + +
Sbjct: 79 MAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDC 138
Query: 117 EAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176
L F ++ P + VIG P Y E+
Sbjct: 139 SVGLAFT---------------SPENVEKLSPLGVPVIG------VPENYDFDSKRIEFP 177
Query: 177 KLLE--TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRA-AYLMSLNVVLTWGM 233
K E D +F KP + A+ Y+SGTT KGV+++HR ++ L V
Sbjct: 178 KFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQ 237
Query: 234 KEGA----VYLWTLPIFHGNGWC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFC 288
E VYL LP+FH G F L +L T V++R+ A + K I VT+F
Sbjct: 238 YEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFP 297
Query: 289 AAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFR-----VTHV--- 340
P +L ++ L + V+ G +P +S K + + HV
Sbjct: 298 VVPPILMALTKKAKGVCGEVLKSLKQVSCGAAP--------LSGKFIQDFVQTLPHVDFI 349
Query: 341 --YGLSEINGPATVCAWNP----NWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQP 394
YG++E T +N + S+ A + A+ V+D T
Sbjct: 350 QGYGMTESTAVGTR-GFNTEKLSKYSSVGLLA-PNMQAK------------VVDWSTGCL 395
Query: 395 IPADGKTIGEVVMRGNMVMKGYLKNPKA 422
+P GE+ ++G VMKGYL NPKA
Sbjct: 396 LPPGNC--GELWIQGPGVMKGYLNNPKA 421
|
Length = 560 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 1e-14
Identities = 102/438 (23%), Positives = 145/438 (33%), Gaps = 110/438 (25%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTG--AVLNCINFRL 104
T+ + +R R +A+ L L PG V +L+P FG G AV
Sbjct: 25 TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAV-------- 75
Query: 105 NPLN-----------VAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIV 153
P +A IL A A V A AL + +LI
Sbjct: 76 -PAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAAL------AAPAALLLLLIA 128
Query: 154 IGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA-LGYTSGTTANPKG 212
D A W+PP + IA L YTSG+T PKG
Sbjct: 129 ADDLAALAAA-----------------------DWRPPPPDPDDIAFLQYTSGSTGAPKG 165
Query: 213 VLVSHRAAYLMSLNVVL---TWGMKEGAV-YLWTLPIFHGNGWCFTWSLAALCGTSVMLR 268
V+V+H L++ N+ +G+ V W LP++H G G V+L
Sbjct: 166 VMVTHGN--LLA-NLRAIARAFGLDPDDVGVSW-LPLYHDMGLIGGLLQPLYAGFPVVL- 220
Query: 269 QASAKAIY------KAIAEHGVT-----NF----CAAPIVLNSIVNAPPEDTI-LPLPHV 312
+ + +AI+ + T NF C E L L
Sbjct: 221 MSPLAFLRRPLRWLEAISRYRATVSGAPNFAYDLCVR--------RVRDEQLAGLDLSSW 272
Query: 313 VNVNTGGSPPPPPILLAMSQK----GFR---VTHVYGLSE---------INGPATVCAWN 356
G P L +++ GFR YGL+E V +
Sbjct: 273 RVAFNGAEPVRADTLERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVD 332
Query: 357 PN---WDSLPFEAQARLNARQGVKC-MCLEGLDVL--DTKTNQPIPADGKTIGEVVMRGN 410
+ A AR+ V C L G +V D +T +P+P +GE+ +RG
Sbjct: 333 RDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDG--EVGEIWVRGP 390
Query: 411 MVMKGYLKNPKANEEAFA 428
V GY P+A E F
Sbjct: 391 SVAAGYWNRPEATAETFG 408
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 103/432 (23%), Positives = 189/432 (43%), Gaps = 55/432 (12%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
++E+ A+ +P +K++ + K T+ + + +R A+ L +L + G V+++ PN P
Sbjct: 29 YVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAV 88
Query: 85 EVHFGVPMTGAVLNCIN---------FRLNPLNVAIILGHAEAALVFVDQQYFALAEEAL 135
++G + G ++ N ++L+ +IL LVF A +
Sbjct: 89 IGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIE 145
Query: 136 KIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVT-----EYEKLLETG-----DPE 185
++ + P ++ ++ L +S+ T EK + TG DPE
Sbjct: 146 HVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPE 205
Query: 186 FAWKPPRDEWQSIALGYTSG-TTANPKGVLVSHRAAYLMSL-NVVLTWGMKEG-AVYLWT 242
+AL +G TT PKGV+++H+ +L V + KEG V L
Sbjct: 206 ----------NDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGV 255
Query: 243 LPIFHGNGWCFTWSLAALCGTS-VMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP 301
LP FH G +L+ + G V++ + K +++AI +H VT F AP + +++N+P
Sbjct: 256 LPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSP 315
Query: 302 --PEDTILPLPHVVNVNTGGSPPPPPILLAMSQ-KGFRVTHVYGLSEINGPATVCAWNPN 358
E I + + +G +P P + G ++ YGL+E + P T + N
Sbjct: 316 LLKEYDISSIRACI---SGSAPLPVEVQEKFETVTGGKLVEGYGLTE-SSPVT----HSN 367
Query: 359 WDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLK 418
F + R+ GV E + ++ +T + +P IGE+V++G +MKGY
Sbjct: 368 -----FLWEKRVPGSIGVPWPDTEAM-IMSLETGEALPPG--EIGEIVVKGPQIMKGYWN 419
Query: 419 NPKANEEAFANG 430
P+ +G
Sbjct: 420 KPEETAAVLQDG 431
|
Length = 563 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 90/416 (21%), Positives = 154/416 (37%), Gaps = 70/416 (16%)
Query: 27 ERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEV 86
E A HP R ++V+ + ++ + ++ RLA L +GP V + V
Sbjct: 519 EAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIA---------V 569
Query: 87 HFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY------FALAEEALKIMEG 140
+ M +L A++ A A V +D +Y + L + ++++
Sbjct: 570 ERSIEMVVGLL------------AVL--KAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLT 615
Query: 141 KSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL 200
+S L + P+ L + L G + D +
Sbjct: 616 QSHLL--------------AQLPVPAGLRSLCLDEPADLLCGYSGHNPEVALDPDNLAYV 661
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA---VYLWTLPIFHGNGWCFTWSL 257
YTSG+T PKGV +SH A L + V+ ++ A + + + F +L
Sbjct: 662 IYTSGSTGQPKGVAISHGA--LANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGAL 719
Query: 258 AALCGTSVMLRQA----SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVV 313
A+ G ++ L A+A +A+ GVT P L +++ A P +V
Sbjct: 720 AS--GATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALPRPQRALV 777
Query: 314 NVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLN 371
GG +L + G R+ + YG +E TV ++ L E + N
Sbjct: 778 ---CGGEALQVDLLARVRALGPGARLINHYGPTE----TTV--GVSTYE-LSDEERDFGN 827
Query: 372 ARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
G L GL +LD N P +GE+ + G + +GY + P E F
Sbjct: 828 VPIGQPLANL-GLYILDHYLN---PVPVGVVGELYIGGAGLARGYHRRPALTAERF 879
|
Length = 3956 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 79/376 (21%), Positives = 141/376 (37%), Gaps = 57/376 (15%)
Query: 57 RLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHA 116
RLA+ L + G ++VL+ N + +HF GA+ +N+RL+ + +L A
Sbjct: 34 RLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELDALLQDA 93
Query: 117 EAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176
E P L++ D L+ + +
Sbjct: 94 E-------------------------------PRLLLGDDAVAAGRTDVEDLAAFIASAD 122
Query: 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEG 236
L +P P + S+ L +TSGT+ PKGV++S R + N + +
Sbjct: 123 AL----EPADTPSIPPER-VSLIL-FTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAH 176
Query: 237 AVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQA-SAKAIYKAIAEH--GVTNFCAAPIV 293
+ +L P+FH G + G S+++ K + + G+T++ P +
Sbjct: 177 SSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQM 236
Query: 294 LNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVC 353
+ P D L H+ + TGG+P +L G + +G+SE TV
Sbjct: 237 AQAFRAQPGFDAA-ALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSE---AGTVF 292
Query: 354 AWNPNWDSLPFEAQARLNARQGVKCMCLEG--LDVLDTKTNQPIPADGKTIGEVVMRGNM 411
+ + + A+ G + V+D + N GE+++RG
Sbjct: 293 G-------MSVDC-DVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVP---GELLLRGPN 341
Query: 412 VMKGYLKNPKANEEAF 427
+ GY + P+A AF
Sbjct: 342 LSPGYWRRPQATARAF 357
|
Length = 488 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 109/441 (24%), Positives = 158/441 (35%), Gaps = 146/441 (33%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
YT+ RR+A+ L +L I G V +L PN P G GAV N
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110
Query: 106 PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165
P +A + A L+ Y K +GL + + V+ T D P
Sbjct: 111 PAEIAKQAKASGAKLIITQSCYV-----------DKLKGLAEDDGVTVV---TIDDPP-- 154
Query: 166 YALSKGVTEYEKLLETGD---PEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHR---- 218
+G + +L + + PE P D+ +AL Y+SGTT PKGV+++H+
Sbjct: 155 ----EGCLHFSELTQADENELPEVEISP--DD--VVALPYSSGTTGLPKGVMLTHKGLVT 206
Query: 219 --AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA--LCG-----TSVMLRQ 269
A + N L V L LP+FH +SL + LCG +++ +
Sbjct: 207 SVAQQVDGENPNL--YFHSDDVILCVLPMFH------IYSLNSVLLCGLRVGAAILIMPK 258
Query: 270 ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329
A+ + I H VT AP V PPI+LA
Sbjct: 259 FEIGALLELIQRHKVT---IAPFV------------------------------PPIVLA 285
Query: 330 MSQKGFRVTHVYGLSEI----NGPATVCAWNPNWDSLPFEAQARLNAR-------QG--- 375
+++ V Y LS I +G A L E + A+ QG
Sbjct: 286 IAKS--PVVEKYDLSSIRMVLSGAAP----------LGKELEDAFRAKLPNAVLGQGYGM 333
Query: 376 -----VKCMCL--------------------EGLDVLDTKT------NQPIPADGKTIGE 404
V MCL L ++D +T NQP GE
Sbjct: 334 TEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQP--------GE 385
Query: 405 VVMRGNMVMKGYLKNPKANEE 425
+ +RG +MKGYL +P+A
Sbjct: 386 ICIRGPQIMKGYLNDPEATAN 406
|
Length = 537 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 68/284 (23%), Positives = 127/284 (44%), Gaps = 30/284 (10%)
Query: 30 ATVHPTRKSVVYES-----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
A V+ + ++++ES + Y++ + + R A+ L I G V++ N P
Sbjct: 17 ADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFI 76
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
FG+ GA++ IN RL A IL +++A+L+ Q++ + + + E +
Sbjct: 77 FCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQ--EDAT-- 132
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTS 204
P I + GV+ + +L + PP + + +TS
Sbjct: 133 ---PLRHICLTRVALPADD-------GVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTS 182
Query: 205 GTTANPKGVLVSHR----AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL 260
GTT+ PKGV+++H A Y + L + VYL +P FH + C T ++AA
Sbjct: 183 GTTSRPKGVVITHYNLRFAGYYSAWQCALR----DDDVYLTVMPAFHIDCQC-TAAMAAF 237
Query: 261 C--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP 302
T V+L + SA+A + + ++ T P+++ +++ PP
Sbjct: 238 SAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPP 281
|
Length = 517 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 4e-13
Identities = 100/393 (25%), Positives = 160/393 (40%), Gaps = 58/393 (14%)
Query: 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR 103
K T+ + + RR A AL L + G V V+ PNV V G+ G V + N
Sbjct: 54 KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPT 113
Query: 104 LNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP 163
+ A A L+ + + GK +GL P +IV+G+E
Sbjct: 114 ALESEIKKQAEAAGAKLIVTNDTNY-----------GKVKGLGLP--VIVLGEEK----- 155
Query: 164 LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQS--IALGYTSGTTANPKGVLVSHR--A 219
+G +++LLE D + Q+ AL ++SGTT KGV+++HR
Sbjct: 156 -----IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLV 210
Query: 220 AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC-------GTSVMLRQASA 272
A L S + M V L +P FH + + +C G V++ +
Sbjct: 211 ANLCSSLFSVGPEMIGQVVTLGLIPFFH------IYGITGICCATLRNKGKVVVMSRFEL 264
Query: 273 KAIYKAIAEHGVTNFC--AAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAM 330
+ A+ V+ F PI+LN + N E+ L + + T +P P +L A
Sbjct: 265 RTFLNALITQEVS-FAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAF 323
Query: 331 SQK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDV-- 386
K G +V YGL+E + T+ +P + A++ L L+V
Sbjct: 324 EAKFPGVQVQEAYGLTE-HSCITLTHGDPE--------KGHGIAKKNSVGFILPNLEVKF 374
Query: 387 LDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKN 419
+D T + +P + T GE+ +R VM+GY N
Sbjct: 375 IDPDTGRSLPKN--TPGELCVRSQCVMQGYYNN 405
|
Length = 546 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 6e-13
Identities = 85/328 (25%), Positives = 133/328 (40%), Gaps = 37/328 (11%)
Query: 26 LERAATVHPTRKSVV--YESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83
L RAAT P ++V T+ + R +A+ L + P V+V++PN
Sbjct: 7 LRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDA 66
Query: 84 YEVHFGVPMTGAVLNCINFRLNPLNVA--IILGHAEAALVFVDQQYFALAEEALKIMEGK 141
+ GAV +N RL P +A I G AA++ VD A +A+
Sbjct: 67 VIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVD----AQVMDAIF----- 117
Query: 142 SEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALG 201
++ +GD P E+ P P E Q +
Sbjct: 118 --QSGSGVRVLALGDLVGLGEP----------------ESAGPPIEDPPREPE-QPAFVF 158
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA--VYLWTLPIFHGNGWCFTWSLA- 258
YTSGTT PKG ++ RAA L + G++ G V L +P++H G+ A
Sbjct: 159 YTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAAL 218
Query: 259 ALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318
AL GT V++ + K I + VT+ A P L+++ A E L L + +V
Sbjct: 219 ALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAAA-AEGAPLKLDSLEHVTFA 277
Query: 319 GSPPPPPILLAMSQK-GFRVTHVYGLSE 345
G+ P +L ++Q ++YG +E
Sbjct: 278 GATMPDAVLERVNQHLPGEKVNIYGTTE 305
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 90/409 (22%), Positives = 139/409 (33%), Gaps = 103/409 (25%)
Query: 33 HPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92
HP R ++V T+ + +R RLA+ L L G V+V P Y +
Sbjct: 4 HPDRPALVVGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAY-----AAI 58
Query: 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLI 152
+ G A V +D AE KI+E P L+
Sbjct: 59 LACLK---------------AGAA---YVPLDPSQ--PAERIAKILE-----AAGPAALV 93
Query: 153 VIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKG 212
D+ L Y L +TSG+T PKG
Sbjct: 94 ADPDD------LAYIL---------------------------------FTSGSTGKPKG 114
Query: 213 VLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVML----R 268
V +SH +V + + EG V+ P F + F A G ++ + +
Sbjct: 115 VQISHANLASFLDWMVEDFDLTEGDVFSNQAP-FSFDLSVFDLFPALASGATLYVIPKEQ 173
Query: 269 QASAKAIYKAIAEHGVTNFCAAP----IVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324
A A+++ + EHG+T + + P ++L S P LP + G P
Sbjct: 174 IADPLALFEFLKEHGLTVWVSVPSFASLLLLSRELNPES-----LPSLRTFLFCGEVLPK 228
Query: 325 PILLAMSQK--GFRVTHVYGLSEINGPATVCAWNP----NWDSLPFEAQARLNARQGVKC 378
+ A+ ++ R+ ++YG +E T P + LP G
Sbjct: 229 KLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPI----------GY-- 276
Query: 379 MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
GL L + G GE+V+ G V GYL NP+ +AF
Sbjct: 277 -PKPGLRALILDEDGRPVPPG-EEGELVIAGPQVSPGYLNNPEKTAKAF 323
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 76/277 (27%), Positives = 109/277 (39%), Gaps = 40/277 (14%)
Query: 171 GVTEYEKLLET--GDPEFAWKPPRDEWQSIAL-GYTSGTTANPKGVLVSHRAAYLMSLNV 227
G +E L++ G PR +AL YTSGTT PKG ++HR L + N
Sbjct: 192 GTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRN--LFA-NA 248
Query: 228 V--LTW--GMKEGA-VYLWTLPIFHGNGWCFTWSLAALCG-TSVMLRQASAKAIYKAIAE 281
W G+ +G L LP+FH G +LA G V+L I A+ +
Sbjct: 249 AQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKK 308
Query: 282 HGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL-LAMSQKGFRVTHV 340
H T P + I A E + L V N +G P + L G +
Sbjct: 309 HPPTWLPGVPPLYEKIAEAAEERGV-DLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEG 367
Query: 341 YGLSEINGPATVCAWNPNWDS-------LPFEAQARLNARQGVKCMCLEGLDVLDTKTNQ 393
YGL+E + P V NP D +PF R ++D +
Sbjct: 368 YGLTETS-PIIVG--NPMSDDRRPGYVGVPFPDT---EVR------------IVDPEDPD 409
Query: 394 PIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
DG+ GE+++RG V KGY P+ ++F +G
Sbjct: 410 ETMPDGEE-GELLVRGPQVFKGYWNRPEETAKSFLDG 445
|
Length = 573 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 63/275 (22%), Positives = 102/275 (37%), Gaps = 66/275 (24%)
Query: 173 TEYEKLLETGDPEFAWKPPRDEWQSIALG-YTSGTTANPKGVLVSHRAAYLMS-LNVVLT 230
E ++ L P+ A +TSG+T PK V+ + +L S
Sbjct: 63 EELQQQLADLQPD---------LDRPATIIFTSGSTGKPKAVVHT-WGNHLASARGSAEN 112
Query: 231 WGMKEGAVYLWTLPIFHGNGWCFTWSLA-----ALCGTSVMLRQA-SAKAIYKAIAEHGV 284
G+ +L +LP+FH +G LA L G +++L A+AI +A+ HGV
Sbjct: 113 LGLTPDDNWLLSLPLFHVSG------LAIVMRSLLAGGALVLPDKFDAEAIAEALENHGV 166
Query: 285 TNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLS 344
T+ P L ++ + L + V GG+P PP +L Q+G + YG++
Sbjct: 167 THISLVPTQLQRLLESLGAR---WLSSLRAVLLGGAPIPPSLLEQARQRGIPLYPTYGMT 223
Query: 345 EINGPATVCAWNPN-----WDS----LPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPI 395
E + V P+ S LP + R+ Q
Sbjct: 224 ETA--SQVATLKPDDFLAKLGSVGKPLPG-RELRIVNPQ--------------------- 259
Query: 396 PADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
GE+++RG + GYL +G
Sbjct: 260 ------DGEILVRGPSLFLGYLPQGGLTPPLDEDG 288
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 42/244 (17%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMS-LNVVLTW-GMKEGAVYLWTLPIFH--GNGWCFT 254
A+ YTSG+T PKGV++SHR L + + + + E L LP G T
Sbjct: 6 AIIYTSGSTGEPKGVMLSHRN--LTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLT 63
Query: 255 WSLAALCGTSVMLRQASA--KAIYKAIAEHGVTNFCAAPIV---LNSIVNAPPEDTILPL 309
A G +++L A + + K +A+ +T F P L + ED
Sbjct: 64 ---AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLARED----F 116
Query: 310 PHVVNV-NTGGSPPPPPIL-LAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQ 367
P + + N GG+ P IL L + ++ +YGL+E A + P P E
Sbjct: 117 PSLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE----AFRSTYLP-----PEELD 167
Query: 368 ARLN----ARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKAN 423
R + A V+ V+D N+ P + +GE+V RG VMKGY +P+A
Sbjct: 168 RRPDSIGKAIPNVELW------VVDEDGNRCAPGE---VGELVHRGANVMKGYWNDPEAT 218
Query: 424 EEAF 427
E
Sbjct: 219 AERL 222
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 5e-12
Identities = 101/418 (24%), Positives = 143/418 (34%), Gaps = 71/418 (16%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
ERA P +VV++ + T+ + +R RLA AL +GP V + M
Sbjct: 4557 VAERARM-TPDAVAVVFDEEKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEM- 4614
Query: 85 EVHFGVPMTG--AVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKS 142
M G AVL A A V +D +Y E L M S
Sbjct: 4615 -------MVGLLAVLK-----------------AGGAYVPLDPEY---PRERLAYMMEDS 4647
Query: 143 EGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE---TGDPEFAWKPPRDEWQSIA 199
L++ R P+ L+ + ++ E DP P ++A
Sbjct: 4648 GA-----ALLLTQSHLLQRLPIPDGLASLALDRDEDWEGFPAHDPAVRLHP-----DNLA 4697
Query: 200 -LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMK------EGAVYLWTLPIFHGNGWC 252
+ YTSG+T PKGV VSH SL L + + V + F G+
Sbjct: 4698 YVIYTSGSTGRPKGVAVSHG-----SLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEG 4752
Query: 253 FTWSLAALCGTSVMLRQASA---KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPL 309
L G SV++R S + +Y I EH VT P+ L + D
Sbjct: 4753 LYHPLI--NGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG--EP 4808
Query: 310 PHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQAR 369
P + GG A +R L GP W + +A
Sbjct: 4809 PSLRVYCFGGEAVAQ----ASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGA 4864
Query: 370 LNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
G G VLD + N P+P GE+ + G V +GYL+ P E F
Sbjct: 4865 AYMPIGTPLGNRSGY-VLDGQLN-PLPVGV--AGELYLGGEGVARGYLERPALTAERF 4918
|
Length = 5163 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 7e-12
Identities = 97/447 (21%), Positives = 157/447 (35%), Gaps = 105/447 (23%)
Query: 45 HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL 104
T++Q Y+ CR+ A A +L + +V +L N P + G G + I
Sbjct: 8 TLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTN 67
Query: 105 NPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPL 164
+P + +EA ++ VD ++ KI+ + + L +I + ++ P
Sbjct: 68 SPEACQYVAETSEANILVVDNA-----KQLQKILAIQDQ-LPHLKAIIQYREPLKEKEPN 121
Query: 165 EYA------LSKGV--TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVL-- 214
Y+ L + + + + ++E+ P Q L YTSGTT PKGV+
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPN----------QCCTLIYTSGTTGMPKGVMLS 171
Query: 215 ------------------------------VSHRAAYLMSLNVVLTWGMKEGAVYL---- 240
+SH AA ++ + + ++ G G VY
Sbjct: 172 HDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVG---GCVYFAQPD 228
Query: 241 ---WTLP---------IFHGNGWCFTW---SLAALCGTSVMLRQASAKAIYKAIAEH--- 282
TL F G + + A+ S L++ A E
Sbjct: 229 ALKGTLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLK 288
Query: 283 ---GVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTH 339
G + + +V L L TG +P L +
Sbjct: 289 LMGGESPPPMCFRLAKKLVFKKVR-KALGLDRCQKFFTGAAPISRETLEFFLSLNIPIME 347
Query: 340 VYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADG 399
+YG+SE +GP TV NP RL + C + L +TK + P ADG
Sbjct: 348 LYGMSETSGPHTVS--NPQ--------NYRLLS-------CGKALPGCETKIHNP-DADG 389
Query: 400 KTIGEVVMRGNMVMKGYLKNPKANEEA 426
IGE+ + G V GYL + EEA
Sbjct: 390 --IGEICIWGRHVFMGYLNMEEKTEEA 414
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 98/424 (23%), Positives = 164/424 (38%), Gaps = 46/424 (10%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L +AA + R ++ + + T+ + A+AL + G +V++ N P
Sbjct: 26 LLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHP 85
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHA---EAALVFVDQQYFALAEEALKIMEGK 141
FG GA + L+PL+ L H A + + AL ALK +E
Sbjct: 86 INFFGALKAGARV----VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLE-- 139
Query: 142 SEGLFKPPVLIVIGDETCDRAPLEYAL---SKGVTEYEKLLETGDPEFAWKPPRDEWQSI 198
+GL LIV D+ + A + Y ++ W P +
Sbjct: 140 -KGLLDR--LIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEW--PAVTPDDV 194
Query: 199 A-LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAV------YLWTLPIFHGNGW 251
A L YT GTT PKG +++H ++++ WG A + LP+FH
Sbjct: 195 ALLQYTGGTTGLPKGAMLTH-GNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253
Query: 252 CFTWSLAALCGTSVMLRQA-SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLP 310
+ G + L Q A+++ I E T F P + ++ N P + L
Sbjct: 254 TVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEK-RDLS 312
Query: 311 HVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQAR 369
+ + +GG+P P + +K G ++ +G++E P T P E +
Sbjct: 313 SLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGT---------GHPPEGPDK 363
Query: 370 LNARQGVKCMCLEG--LDVLD-TKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426
G + L G LDV+ + +P +GE+ +RG V +GY P+ + EA
Sbjct: 364 ----PGSIGLMLPGIELDVVSLDDPTKVLPPG--EVGELRIRGPNVTRGYWNRPEESAEA 417
Query: 427 FANG 430
F
Sbjct: 418 FVGD 421
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 51/238 (21%), Positives = 82/238 (34%), Gaps = 27/238 (11%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTL--PIFHGNGWC---FTWS 256
+TSGTT PK VL +H + ++ ++ WT+ P + W W
Sbjct: 88 FTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLH-WTIADPGWAKGAWSSLFAPWL 146
Query: 257 LAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVN 316
L A R+ A+ + + +GVT FCA P ++ H+ +V
Sbjct: 147 LGA-AVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDLSSYD--FSHLRHVV 203
Query: 317 TGGSP-PPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQG 375
+ G P P I + G + YG +E + G
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGME--------------VKPG 249
Query: 376 VKCMCLEGLDV--LDTKTNQPIPADGKTIG-EVVMRGNMVMKGYLKNPKANEEAFANG 430
G V +D + N+ P + I V R + +GYLK+P+ E
Sbjct: 250 SMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGD 307
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 96/429 (22%), Positives = 157/429 (36%), Gaps = 82/429 (19%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASAL-SQLSIGPGTAVSVLSPNVPAMY 84
L A + + +E +W++ + A+AL ++L V VL N P
Sbjct: 11 LLPLAEDD--DRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFS 68
Query: 85 EVHFGVPMTGAVLNCIN-FRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSE 143
+ ++G V +N R I HA+ LV + + L +
Sbjct: 69 LLLGAAALSGIVPVGLNPTRRGAALARDIA-HADCQLVLTESAHAELLDGLD-------- 119
Query: 144 GLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLET---GDPEFAWKPPRDEWQSIAL 200
P V ++ D + L +P F P D + I
Sbjct: 120 ----PGVRVINVDSP---------------AWADELAAHRDAEPPFRVADPDDLFMLI-- 158
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSLNVVLT--WGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
+TSGT+ +PK V +HR + S V+L +G+ V ++P+FH N W++A
Sbjct: 159 -FTSGTSGDPKAVRCTHRK--VASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVA 215
Query: 259 ALCGTSVMLRQA-SAKAIYKAIAEHGVT--NFCAAPIVLNSIVNAP--PEDTILPLPHVV 313
G S+ LR+ SA + +G T N+ P L+ ++ P P+D PL +V
Sbjct: 216 LAAGASIALRRKFSASGFLPDVRRYGATYANYVGKP--LSYVLATPERPDDADNPL-RIV 272
Query: 314 NVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNA 372
N G P + +++ G V +G +E G + P P A L
Sbjct: 273 YGNEGA----PGDIARFARRFGCVVVDGFGSTE--GGVAI-TRTP---DTPPGALGPLPP 322
Query: 373 RQGVKCMCLEGLDVLDTKTNQPIP-----ADGKT-----IGEVV-MRGNMVMKGYLKNPK 421
G+ ++D T P IGE+V G +GY +P+
Sbjct: 323 ----------GVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPE 372
Query: 422 ANEEAFANG 430
A+ E G
Sbjct: 373 ADAERMRGG 381
|
Length = 529 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 71/336 (21%), Positives = 118/336 (35%), Gaps = 46/336 (13%)
Query: 29 AATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88
AA P R ++ E TW++ +R LA+AL L IG V ++ N E
Sbjct: 52 AAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALL 111
Query: 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKP 148
GA + +N +A ++ V D+++ A + AL
Sbjct: 112 AANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRAL------------- 158
Query: 149 PVLIVIGDETCDRAPLE-YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTT 207
+ + + E L+ + +P + + TSGTT
Sbjct: 159 -------ADCPQATRIVAWTDEDHDLTVEVLIAAHAGQ---RPEPTGRKGRVILLTSGTT 208
Query: 208 ANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSL--AALCGTSV 265
PKG S ++ + + P+FH W F+ + A+L T V
Sbjct: 209 GTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFH--AWGFSQLVLAASLACTIV 266
Query: 266 MLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG------- 318
R+ +A I H T P++ + I++ P E V N +G
Sbjct: 267 TRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE--------VRNRYSGRSLRFAA 318
Query: 319 --GSPPPPPILLA-MSQKGFRVTHVYGLSEINGPAT 351
GS P +++A M Q G + + Y +E AT
Sbjct: 319 ASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIAT 354
|
Length = 537 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 6e-11
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR 103
+ TW + +R RRLA+ L L + PG V++L+ N P + GAV I
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 104 LNPLNVAIILGHAEAALVFVD 124
+P VA IL + A +VFV+
Sbjct: 64 SSPEEVAYILNDSGARVVFVE 84
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 82/416 (19%), Positives = 127/416 (30%), Gaps = 121/416 (29%)
Query: 30 ATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFG 89
A HP +V + T+ + +R +LA L L + PG V
Sbjct: 2 AQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIV---------------- 45
Query: 90 VPMTGAVLNCINFRLNPLNVAIILG--HAEAALVFVDQQYFALAEEALKIMEGKSEGLFK 147
+ +P IL A AA V +D + E L+ + S
Sbjct: 46 ---------ALCLERSPWLYVAILAVLKAGAAYVPID---PSAPVERLQFIIEDSGATV- 92
Query: 148 PPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTT 207
VL D+ Y + YTSG+T
Sbjct: 93 --VLTSSPDDPA------YVI---------------------------------YTSGST 111
Query: 208 ANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLP--IFHGNGWCF---------TWS 256
PKGV+++HR N + GA+ + F T
Sbjct: 112 GKPKGVVITHRNI----CNFLRAE----GAILGIRPGDRVLQFASIAFDVSILEIFTTLL 163
Query: 257 L-AALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNV 315
L + + + + + VT P +L + PED +P + +
Sbjct: 164 AGGTLVIPP---EELRLEDLAEFLNRLRVTVAHLTPSLLALL---DPED----VPSLRTL 213
Query: 316 NTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNAR-- 373
GG P ++ S+ R+ + YG +E ATV A S + R
Sbjct: 214 ILGGEACPQALVDRWSKPR-RLLNTYGPTE----ATVTA---TA-SRLTPGKPVNIGRPL 264
Query: 374 QGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFAN 429
C VLD +P +GE+ + G V +GYL P+ E F
Sbjct: 265 PNYTCW------VLDPDLEPLVPIG--AVGELCIGGPGVARGYLNRPELTAEKFIP 312
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 67/238 (28%), Positives = 99/238 (41%), Gaps = 32/238 (13%)
Query: 202 YTSGTTANPKGVLVSHRA--AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
+TSG+ PKGV++SHR A + + V+ + V L LP+FH G T L
Sbjct: 152 FTSGSEGLPKGVVLSHRNLLANIDQIAAVI--DLNTEDVLLGALPLFHAFGLTVTLLLPL 209
Query: 260 LCGTSVMLRQAS---AKAIYKAIAEHGVTNFCAAPIVLNSIV-NAPPEDTILPLPHVVNV 315
L G V+ + AK I + I ++ T C P L NA PED L VV
Sbjct: 210 LTGLRVVY-YPNPLDAKKIAELIRDYKATILCGTPTFLRGYARNAHPEDF-SSLRLVV-- 265
Query: 316 NTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQ 374
G P +K G R+ YG +E + V + N + +
Sbjct: 266 -AGAEKLPEATRELFEEKFGIRILEGYGATEC---SPVISVN-----------TPMGNKP 310
Query: 375 GVKCMCLEGLDV--LDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
G L G++V + +T++ +P G +++RG VM GYL N + E G
Sbjct: 311 GTVGRPLPGIEVRIVSPETHEELPIG--EGGLLLVRGPNVMSGYLNNEEKTSEVEVLG 366
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 42/240 (17%)
Query: 202 YTSGTTANPKGVLVSHRA--AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
YTSGTT PKGV++S RA A L +L W V + LP+FH +G L
Sbjct: 135 YTSGTTGPPKGVVLSRRAIAADLDAL--AEAWQWTADDVLVHGLPLFHVHGLVLG-VLGP 191
Query: 260 L--CGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
L V + + +A +A++E G T + P V + I P + L + +
Sbjct: 192 LRIGNRFVHTGRPTPEAYAQALSEGG-TLYFGVPTVWSRIAADP--EAARALRGARLLVS 248
Query: 318 GGSPPPPPILLAMSQ-KGFRVTHVYGLSE--------INGPATVCAWNPNWDSLPFE-AQ 367
G + P P+ ++ G R YG++E +G P W LP +
Sbjct: 249 GSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGER-----RPGWVGLPLAGVE 303
Query: 368 ARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
RL G P+P DG+T+GE+ +RG + GYL P A AF
Sbjct: 304 TRLVDEDGG-----------------PVPHDGETVGELQVRGPTLFDGYLNRPDATAAAF 346
|
Length = 471 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 63/266 (23%), Positives = 106/266 (39%), Gaps = 36/266 (13%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
++ + + RRL +AL +L + V +L + G G V +N L
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 106 PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165
+ A +L + A +VFV + + + AL GKS L +V+G
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELLPVIKAAL----GKSPHLEH---RVVVGRP-------- 135
Query: 166 YALSKGVTEYEKLLETGDPEFAWKPPR-DE---WQSIALGYTSGTTANPKGVLVSHRAAY 221
G + +LL T +F + D+ W Y+SG+T PKGV+ +H Y
Sbjct: 136 ---EAGEVQLAELLATESEQFKPAATQADDPAFWL-----YSSGSTGMPKGVVHTHSNPY 187
Query: 222 LMSLNVVL-TWGMKEGAVYLWTLPIFH----GNGWCFTWSLAALCGTSV-MLRQASAKAI 275
+ T G++E V +F GN F S+ A T+V M + + A+
Sbjct: 188 WTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGA---TTVLMGERPTPDAV 244
Query: 276 YKAIAEHGVTNFCAAPIVLNSIVNAP 301
+ + H T F P + +++ P
Sbjct: 245 FDRLRRHQPTIFYGVPTLYAAMLADP 270
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 64/264 (24%), Positives = 91/264 (34%), Gaps = 71/264 (26%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
Y++Q+ + R A+ L+ L +G G V L P P +Y G GAV
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYG------- 53
Query: 106 PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165
PL + A E ++ DR LE
Sbjct: 54 PL-------------------FSAFGPEPIR-----------------------DR--LE 69
Query: 166 YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL 225
+K + +L E DPE L +TSGTT PKGVL HRA
Sbjct: 70 LGEAKVLITTPELYERTDPE----------DPALLHFTSGTTGKPKGVLHVHRAVVAHYA 119
Query: 226 NVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA----LCGTSVMLRQA--SAKAIYKAI 279
++ VY T GW S L G ++++ + A+ Y +
Sbjct: 120 TARYVLDLRPDDVYWCTA----DPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGIL 175
Query: 280 AEHGVTNFCAAPIVLNSIVNAPPE 303
E VT + AP L ++ A PE
Sbjct: 176 EEEKVTVWYTAPTALRMLMRAGPE 199
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 59/246 (23%), Positives = 93/246 (37%), Gaps = 37/246 (15%)
Query: 198 IALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-FTWS 256
I L +TSGTT PK VL +H + + L+ + G++ G ++ + GW WS
Sbjct: 87 ILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDIH-LNIS---SPGWAKHAWS 142
Query: 257 ------LAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLP 310
A + + A+ A+ + GVT FCA P V + + L
Sbjct: 143 SFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQQDLAQYDVRLR 202
Query: 311 HVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQAR 369
V + G P P ++ + + G + YG +E T N + + R
Sbjct: 203 EAV---SAGEPLNPEVIERVKKAWGLTIRDGYGQTE----TTAMIGNSPGQKVKPGSMGR 255
Query: 370 LNARQGVKCMCLEGLDV-LDTKTNQPIPADGKTIGEVVM----RGNMVMKGYLKNPKANE 424
L G V L + IP T GE+ + R +M GY+ +P+
Sbjct: 256 ----------PLPGYRVVLLDDEGKEIPV---TEGEIALDLGDRPIGLMLGYMGDPEKTA 302
Query: 425 EAFANG 430
AF G
Sbjct: 303 AAFRGG 308
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 6e-09
Identities = 68/275 (24%), Positives = 105/275 (38%), Gaps = 23/275 (8%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
+L A P R ++++ T+ + + R A+ L Q +G G V+V PN P +
Sbjct: 38 YLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFH 97
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGH----AEAALVFVDQQYFALAEEALK---- 136
V FG+ GAV + ++PL L + A A ++ Q + E+
Sbjct: 98 IVFFGILKLGAV----HVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSL 153
Query: 137 ---IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRD 193
I+ ++ L P L + ++ L A G + L PP
Sbjct: 154 RHVIVTSLADVLPAEPTLPL--PDSLRAPRLAAA---GAIDLLPALRA-CTAPVPLPPPA 207
Query: 194 EWQSIALGYTSGTTANPKGVLVSHR-AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC 252
AL YT GTT PKG + R Y + + E +V+L LP F G
Sbjct: 208 LDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGEN 267
Query: 253 FTWSLAALCG-TSVMLRQASAKAIYKAIAEHGVTN 286
F G T V+L + A A A+ + VT
Sbjct: 268 FGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTR 302
|
Length = 567 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 88/425 (20%), Positives = 138/425 (32%), Gaps = 89/425 (20%)
Query: 27 ERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEV 86
E+AA P +VV+ +H ++ + R RLA L +GP V++ + +
Sbjct: 2011 EQAARA-PEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFEL--- 2066
Query: 87 HFGVPMTG--AVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
+ AVL A A V +D Y A E L M S G
Sbjct: 2067 -----VVALLAVLK-----------------AGGAYVPLDPNYPA---ERLAYMLEDS-G 2100
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE---TGDPEFAWKPPRDEWQSIA-L 200
L++ +R PL +++ + + P +++A +
Sbjct: 2101 A----ALLLTQRHLLERLPLPAGVARLPLDRDAEWADYPDTAPAVQLAG-----ENLAYV 2151
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAA 259
YTSG+T PKGV VSH A + + L + F G + L
Sbjct: 2152 IYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPL-- 2209
Query: 260 LCGTSVMLRQAS---AKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVN 316
L G V++R + +Y + HGVT P+ L + D
Sbjct: 2210 LNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD------------ 2257
Query: 317 TGGSPPPPPILL----AMSQKGFRVTH----------VYGLSEINGPATVCAWNPNWDSL 362
G PP + A+ R+ YG +E T W
Sbjct: 2258 --GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTE--AVVTPLLWKCRPQDP 2313
Query: 363 PFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKA 422
A + G + +LD N + GE+ + G + +GYL P
Sbjct: 2314 CGAAYVPIGRALGNRRAY-----ILDADLN-LLAPGM--AGELYLGGEGLARGYLNRPGL 2365
Query: 423 NEEAF 427
E F
Sbjct: 2366 TAERF 2370
|
Length = 5163 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 96/417 (23%), Positives = 143/417 (34%), Gaps = 58/417 (13%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPG-TAVSVLSPNVPAMY 84
+RA +V Y + +TW++ A+AL L+ V VL N P M
Sbjct: 10 RDRAGDDTI---AVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEML 66
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
+ G VL +N +A + A+ L+ D ++ L + G
Sbjct: 67 FWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLD-----------G 115
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTS 204
L P V ++ D Y +L+ D L +TS
Sbjct: 116 LDLPGVRVLDVDTP---------------AYAELVA-AAGALTPHREVDAMDPFMLIFTS 159
Query: 205 GTTANPKGVLVSH----RAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL 260
GTT PK V SH A + +G+ V ++P+FH N W+ A
Sbjct: 160 GTTGAPKAVRCSHGRLAFAGRAL----TERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVA 215
Query: 261 CGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP--PEDTILPLPHVVNVNT 317
G +V L + SA + +G T F L I+ P P+D PL
Sbjct: 216 SGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAF---- 271
Query: 318 GGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSL--PFEAQARLNARQ 374
G+ P + S++ G +V YG SE V S+ A N
Sbjct: 272 -GNEASPRDIAEFSRRFGCQVEDGYGSSE-GAVIVVREPGTPPGSIGRGAPGVAIYNPET 329
Query: 375 GVKCMCLEGLDVLDTKTNQPIPADGKTIGEVV-MRGNMVMKGYLKNPKANEEAFANG 430
+C D N + IGE+V G +GY NP+A E +G
Sbjct: 330 LTECAVAR-FDAHGALLN---ADEA--IGELVNTAGAGFFEGYYNNPEATAERMRHG 380
|
Length = 540 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 79/334 (23%), Positives = 129/334 (38%), Gaps = 50/334 (14%)
Query: 22 PLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP 81
P L A P R +++ + ++++ + LA L++ + PG AV V+ N
Sbjct: 37 PYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGR 96
Query: 82 AMYEVHFGVPMTGA--VLNCINFRLNPLNVAIILGHAEAALV---FVDQQYFALAEEALK 136
F V + GA V FR + L A+ H + F ++ A A++A+
Sbjct: 97 GFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAER--IAGADDAVA 154
Query: 137 IMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQ 196
+++ + G E P A P
Sbjct: 155 VIDPAT-----------AGAEESGGRP-----------------------AVAAP----G 176
Query: 197 SIALGYTSGTTANPKGVLVSH--RAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFT 254
I L TSGTT PKGV + R+A + + ++ ++ G+ +P+FHG G
Sbjct: 177 RIVL-LTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGML 235
Query: 255 WSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHV- 312
AL GT + R A+A + H F A P+VL I+ PP PLP +
Sbjct: 236 MLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLR 295
Query: 313 VNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEI 346
V +++G P M G + + YG +E+
Sbjct: 296 VVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEV 329
|
Length = 516 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 44/314 (14%)
Query: 8 DDLPKNPANFTALTPLWFLERAATVHPTRK----SVVYESK--HYTWQ---QTYQRCRRL 58
D L PA+ +P F A +P + V +SK Y W + Y R+
Sbjct: 33 DGLLDLPADI--DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRI 90
Query: 59 ASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINF-----RLNPLNVAIIL 113
SA+ + PG + N P + + M I + L V I+
Sbjct: 91 GSAIRSRGVNPGDRCGIYGSNCP-----EWIIAMEACNSQGITYVPLYDTLGANAVEFII 145
Query: 114 GHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVT 173
HAE ++ FV + + L + S L ++ GD + ++ E A GV+
Sbjct: 146 NHAEVSIAFVQESKIS---SILSCLPKCSSNL---KTIVSFGDVSSEQK--EEAEELGVS 197
Query: 174 --EYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRA--AYLMSLNVVL 229
+E+ G + PP+ + + YTSGTT PKGV++++RA A ++S + +L
Sbjct: 198 CFSWEEFSLMGSLDCEL-PPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLL 256
Query: 230 TWGMK---EGAVYLWTLPIFHGNGWCFTWSLAALC---GTSVMLRQASAKAIYKAIAEHG 283
+ E Y LP+ H + + C G S+ Q + + + +
Sbjct: 257 KVTDRVATEEDSYFSYLPLAH----VYDQVIETYCISKGASIGFWQGDIRYLMEDVQALK 312
Query: 284 VTNFCAAPIVLNSI 297
T FC P V + I
Sbjct: 313 PTIFCGVPRVYDRI 326
|
Length = 660 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 62/272 (22%), Positives = 103/272 (37%), Gaps = 37/272 (13%)
Query: 46 YTWQQTYQRCRRLASAL-SQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL 104
T+ + +R ++A AL + + PG V++L N PA + G+ G +N +
Sbjct: 4 VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNI 63
Query: 105 NPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPL 164
++ A ++ D + EE L ++ G+ + + +
Sbjct: 64 RSGSLLHCFRCCGARVLVADPELLEAVEEILP--ALRAMGV----RVFYLSHTS------ 111
Query: 165 EYALSKGVTEYEKLLETGDPEFAWKPPRD-----EWQSIALG-YTSGTTANPKGVLVSHR 218
+GV LL D P +S AL YTSGTT PK +SH
Sbjct: 112 ---PPEGV---ISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHL 165
Query: 219 AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCG------TSVMLRQASA 272
S + L + VY TLP++H +G +L + G T V+ + SA
Sbjct: 166 RVLQCSGMLSLCGVTADDVVYT-TLPLYHSSG-----ALLGIVGCIGLGATLVLKPKFSA 219
Query: 273 KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED 304
+ ++ VT F +L + N P D
Sbjct: 220 SQFWDDCRKYNVTVFQYIGELLRYLCNQPQSD 251
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 60/245 (24%), Positives = 92/245 (37%), Gaps = 50/245 (20%)
Query: 202 YTSGTTANPKGVLVSHRA--AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWS--- 256
YTSG+T PKGV VSHRA +L+S+ G+ L I F S
Sbjct: 100 YTSGSTGKPKGVEVSHRALVNFLLSMARRP--GLGASDRLLAVTTI------SFDISVLE 151
Query: 257 --LAALCGTSVMLRQAS----AKAIYKAIAEHGVTNFCAAP----IVLNSIVNAPPEDTI 306
L L G +V++ A + + + IA+ +T A P ++L + T
Sbjct: 152 LLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATPATWRMLLAAGWRGRESLTA 211
Query: 307 LPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATV--CAWNPNWDSLPF 364
L GG P + + G + ++YG +E T+ P
Sbjct: 212 L---------CGGEALPRDLAERLLSTGAELWNMYGPTE----TTIWSTCARVTAADGPV 258
Query: 365 EAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424
+ Q + VLD + QP+P GE+ + G+ V +GYL P+
Sbjct: 259 TIGRPIANTQ---------VYVLD-EDLQPVPPG--VPGELYIGGDGVARGYLGRPELTA 306
Query: 425 EAFAN 429
E F
Sbjct: 307 ERFVP 311
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 48/188 (25%), Positives = 72/188 (38%), Gaps = 38/188 (20%)
Query: 34 PTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMT 93
P +V+ + T+ + +R +A+AL + PG V+V+ P G+ +
Sbjct: 1 PDATAVIDGAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLA 60
Query: 94 GAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIV 153
GA I+ A IL A A V D A EEA P +L+V
Sbjct: 61 GAAYVPIDPDQPAERRAAILARAGARAVLTDPGL-AQPEEA-------------PDLLVV 106
Query: 154 IGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA-LGYTSGTTANPKG 212
D P PPR + +A + +TSG+T PKG
Sbjct: 107 ADDAAAA---------------------ESPAPP--PPRVDPDDLAYVIFTSGSTGEPKG 143
Query: 213 VLVSHRAA 220
V+++HRAA
Sbjct: 144 VMITHRAA 151
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 66/251 (26%), Positives = 93/251 (37%), Gaps = 47/251 (18%)
Query: 200 LGYTSGTTANPKGVLVSHR------AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF 253
L YTSGTT PKG L HR + + G V+ WT P W +
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFE----LAPRPGDVF-WT-PA----DWAW 142
Query: 254 TWSL------AALCGTSVM---LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED 304
L A G V+ +++ + + + +GVTN P L + E
Sbjct: 143 IGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSER 202
Query: 305 TILPLPHVVNVNTGGSPPPPPILL-AMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLP 363
L + V +GG +L A + G V YG +E N CA
Sbjct: 203 ARYDL-RLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCA--------- 252
Query: 364 FEAQARLNARQGVKCMCLEG--LDVLDTKTNQPIPADGKTIGEV-VMRGNMVM-KGYLKN 419
A AR G + G + V+D +P+P +GE+ V R + VM GY N
Sbjct: 253 ----ALGPARPGSMGKPVPGHEVAVVDDA-GRPVPPG--EVGEIAVKRPDPVMFLGYWNN 305
Query: 420 PKANEEAFANG 430
P+A FA
Sbjct: 306 PEATAAKFAGD 316
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 91/419 (21%), Positives = 152/419 (36%), Gaps = 64/419 (15%)
Query: 28 RAATVHPTRKSVVYE-SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEV 86
+ A P + +VV YT+ RLA+ L I PG V+ P +
Sbjct: 31 QTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTII 90
Query: 87 HFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLF 146
+ GAV + + +L +A +F F I+ +++
Sbjct: 91 YLACLKVGAVSVPLLPSWREAELVWVLNKCQAK-MFFAPTLFKQTRPVDLILPLQNQLPQ 149
Query: 147 KPPVLIVIGDETCDR-APLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSG 205
++ V D+ AP +LS +++ +P + A+ +TSG
Sbjct: 150 LQQIVGV------DKLAPATSSLS-----LSQIIADYEP-LTTAITTHGDELAAVLFTSG 197
Query: 206 TTANPKGVLVSH------RAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
T PKGV+++H AY LN LTW V++ P+ H G F + A
Sbjct: 198 TEGLPKGVMLTHNNILASERAYCARLN--LTW----QDVFMMPAPLGHATG--FLHGVTA 249
Query: 260 ---LCGTSVMLRQASAKAIYKAIAEHGVT-NFCAAPIV---LNSIVNAPPEDTILPLPHV 312
+ SV+L + A + + T A P + LN + P + + L
Sbjct: 250 PFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRF--- 306
Query: 313 VNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATV-----CAWNPNWDSLPFEAQ 367
GG+ P + Q+G ++ VYG +E + A V + + D
Sbjct: 307 --FLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAA-- 362
Query: 368 ARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426
GV+ + V+D + + +P + GE RG V GYL P+ A
Sbjct: 363 -------GVE------IKVVD-EARKTLPPGCE--GEEASRGPNVFMGYLDEPELTARA 405
|
Length = 547 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 55/265 (20%), Positives = 90/265 (33%), Gaps = 22/265 (8%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L A +P +++ ++ +++++ QR LA+ L++L I G V PN+ Y
Sbjct: 28 ILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFY 87
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
V F + G F + E AL +D+ + +
Sbjct: 88 IVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSK-- 145
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWK-PPRDEWQSIALGYT 203
L +IV G E E L P K PP + +
Sbjct: 146 LPTLRNIIVAGQT---------------GEAELFLWLESPAEPVKFPPTKSDEVAFFQLS 190
Query: 204 SGTTANPKGVLVSHRA-AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC- 261
G+T PK + +H Y + +V + W + + YL LP H +L
Sbjct: 191 GGSTGTPKLIPRTHNDYYYSVRRSVEICW-LTQQTRYLCALPAAHNYPLSSPGALGVFYA 249
Query: 262 -GTSVMLRQASAKAIYKAIAEHGVT 285
G V+ S + I H VT
Sbjct: 250 GGCVVLAPDPSPTDCFPLIERHKVT 274
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-08
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
T+ + RLA+AL++L + PG V+ PN V+ GAV+N I
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 106 PLNVAIILGHAEAALVFVDQQY 127
+ IL A A ++FV ++
Sbjct: 62 ERELGFILRQARARVLFVPDEF 83
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 63/216 (29%), Positives = 81/216 (37%), Gaps = 44/216 (20%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVL---SPNVPAMYEVHFGVPMTGAVLNCINF 102
YT+ RLA+ L L + PG V+V SP A+Y GAV
Sbjct: 29 YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALY---LATLRAGAVF----- 80
Query: 103 RLNPLNVAI-------ILGHAEAALVFVDQQYFA-LAEEALKIMEGKSEGLFKPPVLIVI 154
L PLN A +G AE ALV D FA L++ A V
Sbjct: 81 -L-PLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIA-----------AAAGAPHV- 126
Query: 155 GDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVL 214
ET D + G + +F PR A+ YTSGTT KG +
Sbjct: 127 --ETLD--------ADGTGSLLEAAAAAPDDFE-TVPRGADDLAAILYTSGTTGRSKGAM 175
Query: 215 VSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNG 250
+SH +L +V W V + LPIFH +G
Sbjct: 176 LSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHG 211
|
Length = 504 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 32/240 (13%)
Query: 202 YTSGTTANPKGVLVSHR--AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
++SG+ PKGV++SH + + ++ V ++ V L +LP FH G T L
Sbjct: 789 FSSGSEGEPKGVMLSHHNILSNIEQISDVF--NLRNDDVILSSLPFFHSFGLTVTLWLPL 846
Query: 260 LCGTSVMLRQ--ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP---PED-TILPLPHVV 313
L G V+ A I K +A+H T P L + P L L
Sbjct: 847 LEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRL---- 902
Query: 314 NVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLP--FEAQARL 370
V G P + A +K G R+ YG +E + A+V +LP A +
Sbjct: 903 -VVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASV--------NLPDVLAADFKR 953
Query: 371 NA--RQGVKCMCLEG--LDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426
++G M L G + ++D +T + +P G +++ G VMKGYL +P+ E
Sbjct: 954 QTGSKEGSVGMPLPGVAVRIVDPETFEELPP--GEDGLILIGGPQVMKGYLGDPEKTAEV 1011
|
Length = 1146 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 45 HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL 104
YT+ + +R RLA+ L L + PG V+++ N P F + GAV IN L
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 105 NPLNVAIILGHAEAALVFVD 124
+A IL H+ A L+ VD
Sbjct: 63 RGEELAHILDHSGARLIVVD 82
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 74/286 (25%), Positives = 107/286 (37%), Gaps = 56/286 (19%)
Query: 188 WKPPRDEWQSIA-LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIF 246
W PP +IA L YTSG+T P GV ++H L V+ +EG + LP F
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFF 231
Query: 247 HGNGWCFTWSLAALCG--TSVMLRQASAKAIYKAIAE------HGVTNFCAAP---IVLN 295
H G T L AL G + M A + + I E F AAP
Sbjct: 232 HDMG-LITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHA 290
Query: 296 SIVNAPPEDTI-LPLPHVVNVNTGGSPPPPPILL----AMSQKGFRVTHV---YGLSEIN 347
+ P + L L +V + G P P + A + G T + YG++E
Sbjct: 291 AARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAE-- 348
Query: 348 GPATVCAWNPNWDSLPFEAQAR--------LNARQGV----------------KCMCLEG 383
AT+ + P + + LNA + V K E
Sbjct: 349 --ATLFV-----STTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEW 401
Query: 384 LDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFAN 429
++D +T +P DG+ IGE+ + GN + GY P+ F N
Sbjct: 402 AVIVDPETASELP-DGQ-IGEIWLHGNNIGTGYWGKPEETAATFQN 445
|
Length = 631 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 79/316 (25%), Positives = 118/316 (37%), Gaps = 78/316 (24%)
Query: 27 ERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEV 86
++ A ++ + V + YT+ + Y RLA L +L + G V + P +P E
Sbjct: 57 DQIALIYDS--PVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIP---EA 111
Query: 87 HFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLF 146
A+L C R+ AI H+ +VF FA E A +I + K
Sbjct: 112 VI------AMLACA--RIG----AI---HS---VVFGG---FASKELASRIDDAK----- 145
Query: 147 KPPVLIV-------IGDETCDRAPLEYALSKGVTEYEK--LLETGDPEFAWKPPRD-EWQ 196
P LIV G + L+ AL + K +L G KP RD +W
Sbjct: 146 --PKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLILNRGQVPAPLKPGRDLDWA 203
Query: 197 SIALG------------------YTSGTTANPKGVLVSHRAAYLMSLNVVLT--WGMKEG 236
+ YTSGTT PKGV V Y ++L + +G+K G
Sbjct: 204 ELMAKARPVDCVPVESTDPLYILYTSGTTGKPKGV-VRDTGGYAVALKWSMRNIYGIKPG 262
Query: 237 AVYLWTLPIFHGNGWCFTWSL---AALCG--TSVM-----LRQASAKAIYKAIAEHGVTN 286
V+ + GW S L T+V+ + A A ++ I E+GV
Sbjct: 263 DVFWAASDV----GWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNA 318
Query: 287 FCAAPIVLNSIVNAPP 302
AP + +I P
Sbjct: 319 LFTAPTAIRAIRKQDP 334
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 80/410 (19%), Positives = 130/410 (31%), Gaps = 68/410 (16%)
Query: 27 ERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEV 86
E P ++ + + ++ + +R RLA L + +GP V V V
Sbjct: 3064 EEQVERTPDAVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGV---------AV 3114
Query: 87 HFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLF 146
+ M +L + A A V +D +Y EE L M S
Sbjct: 3115 ERSLEMVVGLLAILK--------------AGGAYVPLDPEY---PEERLAYMLEDSGA-- 3155
Query: 147 KPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGY---T 203
++ L L++GV L+ GD +A P L Y T
Sbjct: 3156 ---------QLLLSQSHLRLPLAQGVQVL--DLDRGDENYAEANPAIRTMPENLAYVIYT 3204
Query: 204 SGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCG 262
SG+T PKGV + H A + +G+ G L F W L + G
Sbjct: 3205 SGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMS--G 3262
Query: 263 TSVML---RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGG 319
V+L A+ + + A S++ A E+ + G
Sbjct: 3263 ARVVLAGPEDWRDPALLVELINSEGVDVLHAYP---SMLQAFLEEEDAHRCTSLKRIVCG 3319
Query: 320 SPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD-SLPFEAQARL-NARQGVK 377
P L G + ++Y GP +W + +
Sbjct: 3320 GEALPADLQQQVFAGLPLYNLY------GPTEATITVTHWQCVEEGKDAVPIGRPIANRA 3373
Query: 378 CMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
C L+G + +P+P +GE+ + G + +GY P E F
Sbjct: 3374 CYILDG-------SLEPVPVG--ALGELYLGGEGLARGYHNRPGLTAERF 3414
|
Length = 5163 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 47/194 (24%), Positives = 68/194 (35%), Gaps = 51/194 (26%)
Query: 34 PTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMT 93
P ++VY + T+ + +R RLA L +GPG V++L P +
Sbjct: 1 PDAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPEL---------- 50
Query: 94 GAVLNCINFRLNPLNVAIILG--HAEAALVFVDQQYFA-----LAEEALKIMEGKSEGLF 146
V IL A AA V +D Y A + E++
Sbjct: 51 ---------------VVAILAILKAGAAYVPLDPAYPAERLAFMLEDS------------ 83
Query: 147 KPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA-LGYTSG 205
VL+ + L + E E E P P + +A + YTSG
Sbjct: 84 GARVLLTDESLAPLARADQLPLV--ILEEELDAEDAGPP----APAVDADDLAYVMYTSG 137
Query: 206 TTANPKGVLVSHRA 219
+T PKGV V HR
Sbjct: 138 STGRPKGVAVPHRG 151
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 95/424 (22%), Positives = 153/424 (36%), Gaps = 83/424 (19%)
Query: 24 WFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83
+ A P ++V+ + ++ + +R RLA L + +GP V V
Sbjct: 3100 LIEAQVAR-TPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGV-------- 3150
Query: 84 YEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY------FALAEEALKI 137
V V M A+L A++ A A V +D +Y + + + +K+
Sbjct: 3151 -AVERSVEMIVALL------------AVL--KAGGAYVPLDPEYPRERLAYMIEDSGVKL 3195
Query: 138 MEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQS 197
+ ++ L + P T DR L G E R ++
Sbjct: 3196 LLTQAHLLEQLPAPAGDTALTLDRLDLN----------------GYSE-NNPSTRVMGEN 3238
Query: 198 IA-LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW-----GMKEGAVYLWTLPI-FHGNG 250
+A + YTSG+T PKGV V H A L L W + L + F G
Sbjct: 3239 LAYVIYTSGSTGKPKGVGVRHGA-----LANHLCWIAEAYELDANDRVLLFMSFSFDGAQ 3293
Query: 251 WCFTWSLAALCGTSVMLRQA---SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL 307
F W+L +CG +++R + +++AI H ++ C P L
Sbjct: 3294 ERFLWTL--ICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGADCA 3351
Query: 308 PLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPA----TVCAWNPNWDSLP 363
L V GG PP A ++ R GL+ GP TV W D++
Sbjct: 3352 SLDIYV---FGGEAVPP----AAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVC 3404
Query: 364 FEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKAN 423
A + + + VLD + N P+P GE+ + G + +GY + P
Sbjct: 3405 EAPYAPIGRPVAGR-----SIYVLDGQLN-PVPVG--VAGELYIGGVGLARGYHQRPSLT 3456
Query: 424 EEAF 427
E F
Sbjct: 3457 AERF 3460
|
Length = 3956 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 54/271 (19%), Positives = 96/271 (35%), Gaps = 38/271 (14%)
Query: 42 ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCIN 101
E + +W + + RLA+AL L + PG V+ PNVP GA+ + +
Sbjct: 83 ERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCS 142
Query: 102 FRLNPLNVAIILGHAEAALVFVDQQY------FALAEEALKIMEGKSEGLFKPPVLIVIG 155
V G E ++F Y E+ +I++G +V+
Sbjct: 143 PDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKG-----LPSLEAVVVV 197
Query: 156 DETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKP-PRDEWQSIALGYTSGTTANPK--- 211
A +T L ++ P D I Y+SGTT PK
Sbjct: 198 PYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWIL--YSSGTTGLPKCIV 255
Query: 212 ----GVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-FTWSLAAL-CGTSV 265
G L+ H + + + ++ G + + GW + W ++ L G ++
Sbjct: 256 HGAGGTLLQHLKEHGLHCD------LRPGDRLFY----YTTTGWMMWNWLVSGLLSGATL 305
Query: 266 MLRQAS-----AKAIYKAIAEHGVTNFCAAP 291
+L S +++ A+ G+T F +
Sbjct: 306 VLYDGSPLYPDPDVLWRLAAKLGITIFGTSA 336
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 56/251 (22%), Positives = 90/251 (35%), Gaps = 44/251 (17%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG--MKEGAVYLWTL--PIFHGNGW--- 251
A YTSGTT PKGV V A L + + + +++ V+ W + P GW
Sbjct: 92 AQMYTSGTTGLPKGVPVPLNA--LAAFYAYMRYAIDLRDDDVF-WNIADP-----GWAYG 143
Query: 252 ---CFTWSLAALCGTSVMLRQA--SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTI 306
T LA G + + + +A+ Y + GVTNF +P ++ A +
Sbjct: 144 LYYAITGPLAM--GITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAA 201
Query: 307 LPLPHVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFE 365
+ ++ G P P ++ G + YG +E G V N + +
Sbjct: 202 RIKLKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTE-TG-MPVG--NHHALAHE-- 255
Query: 366 AQARLNARQGVKCMCLEGLD--VLDTKTNQPIPADGKTIGEVVMRGN----MVMKGYLKN 419
R G + L G VLD P G++ + + GY +
Sbjct: 256 ------VRAGSMGLPLPGYRIAVLDDDGQ---PLADGEPGQLAIDVASSPLLWFSGYWDD 306
Query: 420 PKANEEAFANG 430
P+ E A
Sbjct: 307 PEKTAELIAGR 317
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 20/79 (25%), Positives = 31/79 (39%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
++ + R A AL L + G V++L N P + GAV IN
Sbjct: 4 LSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQR 63
Query: 106 PLNVAIILGHAEAALVFVD 124
+A + ++A V VD
Sbjct: 64 GEVLAHCINVSDARAVIVD 82
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 70/338 (20%), Positives = 125/338 (36%), Gaps = 46/338 (13%)
Query: 30 ATVHPTRKSVVYES--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVH 87
A + P R +V+ + +++Q LA L + G V++LS N P V
Sbjct: 7 AQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVL 66
Query: 88 FGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFK 147
+ +G + IN L I+G + A ++ +A AL + K
Sbjct: 67 WAALRSGLYITAINHHLTAPEADYIVGDSGARVL--------VASAALDGLAAKVGA--D 116
Query: 148 PPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTT 207
P+ + G E G +E L P +P + Y+SGTT
Sbjct: 117 LPLRLSFGGEI-----------DGFGSFEAALAGAGPRLTEQPC-----GAVMLYSSGTT 160
Query: 208 ANPKGVL--VSHRAAYLMSLNVVLT----WGMKEGAVYLWTLPIFHGNG--WCFTWSLAA 259
PKG+ + R +V + + E +Y + PI+H WC + A
Sbjct: 161 GFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSM--VHA 218
Query: 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE-DTILPLPHVVNVNTG 318
L GT V+ ++ A+A + + +T P + ++ + T + + V
Sbjct: 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHA 278
Query: 319 GSPPPPPILLAMSQ-------KGFRVTHVYGLSEINGP 349
+P P + AM + + T +G++ I+ P
Sbjct: 279 AAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSP 316
|
Length = 501 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 58/257 (22%), Positives = 98/257 (38%), Gaps = 52/257 (20%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
A+ +TSG+T PKGV+ +HR + +G++EG L P F G
Sbjct: 89 AILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPPFALFG-------P 141
Query: 259 ALCGTSVM-------LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPH 311
AL T+V+ + +AI E G + +P +L V E+ + LP
Sbjct: 142 ALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALL-KNVARYCEENGIQLPS 200
Query: 312 VVNVNTGGSPPPPPIL---LAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEA-- 366
+ V + G+P PP +L +A + YG +E +LP +
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATE---------------ALPVASIE 245
Query: 367 -----QARLNARQGVKCMC----LEGLDVLDTK-TNQPIPADGKT-------IGEVVMRG 409
+ +C + G+DV + PI + +GE+++ G
Sbjct: 246 GREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSG 305
Query: 410 NMVMKGYLKNPKANEEA 426
V + Y P+A + A
Sbjct: 306 PHVTREYYNRPEATKLA 322
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC 261
YTSGTT PK ++ H Y ++ +GM+ V LP++H G A L
Sbjct: 111 YTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLYHSAGGIMGVGQALLH 170
Query: 262 GTSVMLRQA-SAKAIYKAIAEHGVT 285
G++V++R+ SA + ++ T
Sbjct: 171 GSTVVIRKKFSASNFWDDCVKYNCT 195
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 3e-06
Identities = 62/267 (23%), Positives = 104/267 (38%), Gaps = 34/267 (12%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINF--RL 104
T+Q+ Y +L ++L + + + N P G L C+ L
Sbjct: 81 TYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHG--LYCVPLYDTL 138
Query: 105 NPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPL 164
V I+ H+E ++VFV+++ + E K +E + V+ R
Sbjct: 139 GAGAVEFIISHSEVSIVFVEEKKIS---ELFKTCPNSTEYM-----KTVVSFGGVSREQK 190
Query: 165 EYALSKGVT-----EYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRA 219
E A + G+ E+ KL E + K D + YTSGTT +PKGV++S+ +
Sbjct: 191 EEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSD---ICTIMYTSGTTGDPKGVMISNES 247
Query: 220 AYLMSLNVVLTWG-----MKEGAVYLWTLPIFH----GNGWCFTWSLAALCGTSVMLRQA 270
+ V+ + VYL LP+ H CF G ++ +
Sbjct: 248 IVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQH-----GAAIGFWRG 302
Query: 271 SAKAIYKAIAEHGVTNFCAAPIVLNSI 297
K + + + E T FCA P VL+ +
Sbjct: 303 DVKLLIEDLGELKPTIFCAVPRVLDRV 329
|
Length = 666 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 29/215 (13%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM---TGAVLNCINF- 102
T+++ Y+ ++ SAL PG+ V + N P + V M L C+
Sbjct: 78 TYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCP-----QWIVAMEACAAHSLICVPLY 132
Query: 103 -RLNPLNVAIILGHAEAALVFV-DQQYFALAEEALKIMEGKSEGLFKPPVLIV-IGDETC 159
L P V I+ HAE VFV D++ L E + KS K V + +E
Sbjct: 133 DTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEP-----DCKSAKRLKAIVSFTSVTEEES 187
Query: 160 DRAPLEYALSKGVTEY--EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSH 217
D+A GV Y L G + P + YTSGT+ +PKGV+++H
Sbjct: 188 DKA-----SQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTH 242
Query: 218 R--AAYLMSLNVVLTW---GMKEGAVYLWTLPIFH 247
A ++ +++ + M VYL LP+ H
Sbjct: 243 EAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH 277
|
Length = 660 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 75/399 (18%), Positives = 122/399 (30%), Gaps = 109/399 (27%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
T+++ + R A+ L L + PG V +L P+ P + GA + LN
Sbjct: 11 LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGA----VAVALN 66
Query: 106 PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165
PL L + L+ + S +L+ D+
Sbjct: 67 PL----------------------LTPQDLEHILDDSG----AALLVTEADDIA------ 94
Query: 166 YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL 225
Y L YTSGTT PKGV+ HR +
Sbjct: 95 YWL---------------------------------YTSGTTGKPKGVMHRHRDPLTFAE 121
Query: 226 NVVL-TWGMKEGAVYLWTLPIFH----GNGWCFTWSLAALCGTSVML--RQASAKAIYKA 278
G++ G + +F GN F G S +L + +A+
Sbjct: 122 AFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLF----SGASAVLLPGWPTPEAVLDL 177
Query: 279 IAEHGVTNFCAAPIVLNSIVN--APPEDTILPLPHVVNVNTGGSPPPPPIL-LAMSQKGF 335
+A H T P + +++ A + V + G P + G
Sbjct: 178 LARHRPTVLFGVPALYRALLESGAGSAPLFRSVRLCV---SAGEALPAGLAERWAEATGI 234
Query: 336 RVTHVYGLSE---INGPATVCAWNPNWDSLPFE-AQARLNARQGVKCMCLEGLDVLDTKT 391
+ G +E I A P P +ARL G
Sbjct: 235 EILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARLVDESG---------------- 278
Query: 392 NQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+ +PA T+G++ +RG + GY P+ + +G
Sbjct: 279 -REVPAG--TVGDLWVRGPSLAPGYWNLPEKTQRTLRDG 314
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 61/234 (26%), Positives = 87/234 (37%), Gaps = 34/234 (14%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL- 260
YTSG+T PKGV + HR A + + +E A L I CF S+ +
Sbjct: 112 YTSGSTGRPKGVAIEHRNAAALLQWAAAVFSAEELAGVLAATSI------CFDLSVFEIF 165
Query: 261 ----CGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVN-V 315
G V+L +A A+ A+ VT P ++ LP V V
Sbjct: 166 VPLSTGGRVVLAD-NALALPDLPAKAEVTLINTVPSAARELLRHD------ALPSSVRTV 218
Query: 316 NTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNAR 373
N G P P ++ + RV ++YG SE +T P P + +
Sbjct: 219 NLAGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGASRTPSIGRPLAGTQ 278
Query: 374 QGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
VLD QP+P GE+ + G V +GYL P+ E F
Sbjct: 279 ----------AYVLD-AHLQPVPV--GVPGELYIGGAGVARGYLGRPELTAERF 319
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 52/189 (27%), Positives = 73/189 (38%), Gaps = 34/189 (17%)
Query: 45 HYTWQQTYQRC--RRLA--SALSQLSIGPGTAVSVLSPNVP-------AMYEVHF-GVPM 92
Y W TY R A S L Q I G V + N P A + VP+
Sbjct: 75 EYKWM-TYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPL 133
Query: 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLI 152
L P V I+ HAE A +F Q L + + +++
Sbjct: 134 YDT--------LGPDAVKFIVNHAEVAAIFCVPQ-------TLNTLLSCLSEIPSVRLIV 178
Query: 153 VIGDETCDRAPLEYALSKGVTEYEKLLETG--DPEFAWKPPRDEWQSIA-LGYTSGTTAN 209
V+G L + Y KLL G P+ ++PP+ E +A + YTSGTT
Sbjct: 179 VVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQ-PFRPPKPE--DVATICYTSGTTGT 235
Query: 210 PKGVLVSHR 218
PKGV+++H
Sbjct: 236 PKGVVLTHG 244
|
Length = 651 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 6e-06
Identities = 46/218 (21%), Positives = 75/218 (34%), Gaps = 71/218 (32%)
Query: 46 YTWQ---QTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINF 102
Y W + +R + S L L + PG + + + N P +
Sbjct: 3 YEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQAC-------FSQSL 55
Query: 103 RLNPL-------NVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIG 155
+ PL + IL E ++VF D A+K+
Sbjct: 56 VIVPLYDTLGEEAIEYILNETEISIVFCD---------AVKVYS---------------- 90
Query: 156 DETCDRAPLEYALSKGVTEYEKLLETG-DPEFAWKPPRDEWQSIAL-GYTSGTTANPKGV 213
+E+L E G + PP+ E +A YTSGTT NPKGV
Sbjct: 91 -------------------FEELEELGKKNKVPPTPPKPE--DLATIMYTSGTTGNPKGV 129
Query: 214 LVSHRAAYLMSLNVVLTWGMKEGA----VYLWTLPIFH 247
+++H +++ + + E VY+ LP+ H
Sbjct: 130 MLTHGN--IVAGVAGINKIVPEFIGPTDVYISYLPLAH 165
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 8e-06
Identities = 98/464 (21%), Positives = 153/464 (32%), Gaps = 102/464 (21%)
Query: 2 EPQNDIDDLPKNPA----------NFTA--------LTPLWFLERAATVHPTRKSVVYES 43
PQ +D+LP A N TA + L+ E P ++ +
Sbjct: 477 NPQARVDELPMLDAEERGQLVEGWNATAAEYPLQRGVHRLF--EEQVERTPEAPALAFGE 534
Query: 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR 103
+ + + +R RLA AL + +GP V V AM + M A+L
Sbjct: 535 ETLDYAELNRRANRLAHALIERGVGPDVLVGV------AMER---SIEMVVALL------ 579
Query: 104 LNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP 163
AI+ A A V +D +Y E L M S V +++
Sbjct: 580 ------AIL--KAGGAYVPLDPEY---PAERLAYMLEDSG------VQLLLSQS---HLG 619
Query: 164 LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA------LGYTSGTTANPKGVLVSH 217
+ L+ GV L+ + + + YTSG+T PKG H
Sbjct: 620 RKLPLAAGVQVL--DLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRH 677
Query: 218 RAAYLMSLNVVLTW-----GMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVMLRQA- 270
RA L+ L W G+ G L P F + W F W L + G +++
Sbjct: 678 RA-----LSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMS--GARLVVAAPG 730
Query: 271 ---SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL 327
+ + I GV P +L + + + L +V G P
Sbjct: 731 DHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVASCTSLRRIV---CSGEALPADAQ 787
Query: 328 LAMSQKGF--RVTHVYGLSEINGPATVCAW-NPNWDSLPFEAQ-ARLNARQGVKCMCLEG 383
+ K + ++YG +E T DS+P A L
Sbjct: 788 EQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACY---------- 837
Query: 384 LDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+LD P+P +GE+ + G + +GY P E F
Sbjct: 838 --ILDANLE-PVPV--GVLGELYLAGRGLARGYHGRPGLTAERF 876
|
Length = 5163 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 27 ERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEV 86
+R A V R T+ + R RLA AL L + PG V+VL+P +
Sbjct: 1 DRIALVDGGR--------SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVL 52
Query: 87 HFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVF 122
+ + G V +N +A IL ++ +L+
Sbjct: 53 YLAIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLV 88
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 65/285 (22%), Positives = 102/285 (35%), Gaps = 94/285 (32%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
YT+++ + + A+ L +L + G V + P +P +Y G GA++
Sbjct: 74 YTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVG------- 126
Query: 106 PLNVAIILGHAEAALVFVDQQYFALAEEA----LKIMEGK----SEGLF--KP----PVL 151
PL + A EEA L+ E K + L KP P L
Sbjct: 127 PL-------------------FEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSL 167
Query: 152 ---IVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFA--WKPPRDEWQSIALGYTSGT 206
+++G++ G ++ L+E EF W D L YTSG+
Sbjct: 168 KHVLLVGED--------VEEGPGTLDFNALMEQASDEFDIEWTDRED---GAILHYTSGS 216
Query: 207 TANPKGVLVSHRA--AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFT---------- 254
T PKGVL H A + + VL + E VY WC T
Sbjct: 217 TGKPKGVLHVHNAMLQHYQTGKYVLD--LHEDDVY-----------WC-TADPGWVTGTS 262
Query: 255 ------WSLAALCGTSVMLRQA--SAKAIYKAIAEHGVTNFCAAP 291
W L G + ++ S + Y+ + ++ VT + AP
Sbjct: 263 YGIFAPW----LNGATNVIDGGRFSPERWYRILEDYKVTVWYTAP 303
|
Length = 570 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 391 TNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+P +G + +RG V GY +NP+AN EAF
Sbjct: 391 DGALLPEG--EVGRLQVRGPTVTSGYYRNPEANAEAF 425
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 91/452 (20%), Positives = 169/452 (37%), Gaps = 109/452 (24%)
Query: 26 LERAATVHPTRKSVVY-----ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV 80
++ A P + ++++ E K +T+ + A+ L IG G V + +
Sbjct: 23 VDAYADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLT---L 79
Query: 81 PAMYEVHFGVP---MTGAVL---------NCINFRLNPLNVAIILGHAEAALVFVDQQYF 128
YE F + GA+ I +R+ + +I+ E + ++
Sbjct: 80 KRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGV----PEHI 135
Query: 129 ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAW 188
+EA P +L+++GD + G +++K +E P+F
Sbjct: 136 ---DEAA-------PECGSPTLLVLVGDPVPE----------GWIDFDKEIENASPDF-- 173
Query: 189 KPPRDEWQS----IALGY-TSGTTANPKGVLVSHRAAYLMSLNVVLT---W-GMKEGAVY 239
+ P + I L Y TSGTT PK +V H Y L ++T W +KEG ++
Sbjct: 174 ERPTGNDATCNDDILLVYFTSGTTGMPK--MVEHDHTY--PLGHIVTAKYWQNVKEGGLH 229
Query: 240 L------WTLPI---FHGNGWCFTWSLAALCGTSVML---RQASAKAIYKAIAEHGVTNF 287
L W + +G W + G +V + + K + + I ++GVT F
Sbjct: 230 LTVADTGWGKAVWGKLYGQ-W--------IAGAAVFVYDYDKFDPKNLLEKIEKYGVTTF 280
Query: 288 CAAPIVLNSIVNAPPEDTILP-LPHVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSE 345
CA P + ++ L L + T G P P + +K G ++ +G +E
Sbjct: 281 CAPPTIYRFLIKEDLSKYDLSSLRYCT---TAGEPLNPEVFNTFKEKTGIKLMEGFGQTE 337
Query: 346 INGPATVCAWNPNWDSLPFEAQARLNARQGV--KCMCLEGLDVLDTKTNQPIPADGKTIG 403
T+ W + + G K +D++D + G
Sbjct: 338 T----TLTIATFPW----------MEPKPGSMGKPSPGYDIDIIDPDGK---SCEVGEEG 380
Query: 404 EVVMRGNM-----VMKGYLKNPKANEEAFANG 430
E+V+R + + GY ++P+ E + +G
Sbjct: 381 EIVIRTSDGKPLGLFMGYYRDPERTAEVWHDG 412
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 53/266 (19%), Positives = 99/266 (37%), Gaps = 51/266 (19%)
Query: 202 YTSGTTANPKGVLVSHR--AAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
++SG+T PKGV+++H+ + ++ + + V+L +P+ H G
Sbjct: 113 FSSGSTGEPKGVILTHKNLLTNIEAI--IEAAEITSEDVFLSWMPLTHDMGLIGFHLTPT 170
Query: 260 LCG-------TSVMLRQASAKAIYKAIAEHGVT-----NFCAAPIVLNSIVNAPPEDTIL 307
G T + +R+ + KA ++H T NF +L D
Sbjct: 171 ALGINQYLMPTRLFIRRPLL-WLDKA-SQHRATILSSPNF-GYKYLLKHFKTEKIID--W 225
Query: 308 PLPHVVNVNTGGSPPPPPI----LLAMSQKGFR---VTHVYGLSEINGPATVCAWNPNW- 359
L V + G P + L M+ G R + VYGL+E AT+ P
Sbjct: 226 DLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAE----ATLAVSFPKPG 281
Query: 360 ----------DSLPFEAQARLNARQGVKCM-------CLEGLDVLDTKTNQPIPADGKTI 402
+ L + + + ++G ++ + D +TI
Sbjct: 282 EPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPD-RTI 340
Query: 403 GEVVMRGNMVMKGYLKNPKANEEAFA 428
G + ++G+ V GY NP+A +++
Sbjct: 341 GHIQIKGDNVTSGYYNNPEATKKSIT 366
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 24/137 (17%)
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG-----MKEGAVYLWTLPIFHGNGWCFT 254
+G+TSGTT PKG + HR L + + V++ + P+ FT
Sbjct: 152 IGFTSGTTGLPKGTMHFHRDI----LAICDAFPRHVLQPTPDDVFIGSPPL------AFT 201
Query: 255 WSLAALC-------GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL 307
+ L L ++V+L QA+ + KAI EH T AP +++ I
Sbjct: 202 FGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLIKVKAFDIS 261
Query: 308 PLPHVVNVNTGGSPPPP 324
L V+ G + P
Sbjct: 262 SL--RKCVSAGETLPAK 276
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 22/190 (11%)
Query: 174 EYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGM 233
E +K+ E F P + + + YTSGTT N K V+ S+ +L+ L +
Sbjct: 233 EIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSN-GPHLVGLKYYWRSII 291
Query: 234 --KEGAVYLWTLPI----FHGNGWCFTWSLAALCGTSVMLRQASAKA------IYKAIAE 281
V I FHG F + +L T VM K ++ I +
Sbjct: 292 EKDIPTVVFSHSSIGWVSFHG----FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEK 347
Query: 282 HGVTNFCAAPIVLNSIVNAPPEDTILP----LPHVVNVNTGGSPPPPPILLAMSQK-GFR 336
H VT+ P + ++ PE TI+ L ++ + GG I + K +
Sbjct: 348 HKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIK 407
Query: 337 VTHVYGLSEI 346
+ YG +EI
Sbjct: 408 SSRGYGQTEI 417
|
Length = 647 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
AL YTSGTT PKG +S R + S + ++ +P++HG T +
Sbjct: 91 ALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYHG-----TAAFL 145
Query: 259 ALC------GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE 303
LC GT + R+ SA +K + + T + ++ PP
Sbjct: 146 GLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPPS 196
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 84/386 (21%), Positives = 138/386 (35%), Gaps = 48/386 (12%)
Query: 57 RLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHA 116
LA+ L S+ G+ V V+S N P Y GA+ + L +
Sbjct: 53 GLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQIT 112
Query: 117 EAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176
+ A V A + E L PV+ V ++ E E
Sbjct: 113 DPAAALV-------APGSKMASSAVPEALHSIPVIAV-------------DIAAVTRESE 152
Query: 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMK-- 234
L+ A + +A+ +TSGTT PK VL+++R + + +++ G+
Sbjct: 153 HSLDAASL--AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVP-DILQKEGLNWV 209
Query: 235 ---EGAVYLWTLPIFH-GNGWCFTWSLAALC-GTSVMLRQASAKAIYKAIAEHGVTNFCA 289
G LP H G W W L L G + + ++ + + + V C
Sbjct: 210 TWVVGETTYSPLPATHIGGLW---WILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCL 266
Query: 290 APIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGP 349
P +L+ +V + + +P + V GGS + + G R VYGLSE G
Sbjct: 267 VPTLLSKLV-SELKSANATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSE-TGC 324
Query: 350 ATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIP-----ADGKTIGE 404
+C LP + + + G G+DV T+ P + G
Sbjct: 325 TALC--------LPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGT 376
Query: 405 VVMRGNMVMKGYLKNPKANEEAFANG 430
+ ++ M GY NP+ E +G
Sbjct: 377 LWIKSPANMLGYWNNPERTAEVLIDG 402
|
Length = 540 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 7e-05
Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 15/235 (6%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC 261
+T GTT PK V +H ++ + + + +P++HG+G LA L
Sbjct: 183 FTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAAL-LATLA 241
Query: 262 GTSVMLRQA----SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVN-VN 316
+L A SA + I G T + A P + ++ + P + +
Sbjct: 242 SGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIR 301
Query: 317 TGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQG 375
+ +P A+ + V +G++E T + L R
Sbjct: 302 SCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRST 361
Query: 376 VKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+ + G D P+PA +GEV +RG V++GYL +P F +G
Sbjct: 362 GAQIRIVGSD------GLPLPAG--AVGEVWLRGTTVVRGYLGDPTITAANFTDG 408
|
Length = 534 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 28/100 (28%), Positives = 41/100 (41%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
+E A P +VV + T+ + +R RLA+ L +GP + V V P +
Sbjct: 4 LVEAQAERTPDAIAVVCGDESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLV 63
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVD 124
V GA ++ P +A IL A A LV D
Sbjct: 64 VALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTD 103
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 403 GEVVMRGNMVMKGYLKNPKANEEAF 427
GE+ +RG V KGY KNP+ EAF
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAF 375
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 46/211 (21%)
Query: 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNP 106
TW + ++R RR+A L+ +GPG AV+VL+ + G+ M GA L +
Sbjct: 31 TWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTML------ 84
Query: 107 LNVAIILGHAEAALVFVDQQYFALAEEALKI--MEGKSEGLFKPPVLIVIGDETCDRAPL 164
H D + AE+ L++ M G +V+G+ AP+
Sbjct: 85 --------HQPTPR--TDLAVW--AEDTLRVIGMIGAK--------AVVVGEPFLAAAPV 124
Query: 165 EYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL-GYTSGTTANPKGVLVSHRAAYLM 223
V LL + P +AL TSG+T +PK V ++H Y
Sbjct: 125 LEEKGIRVLTVADLLAADPID----PVETGEDDLALMQLTSGSTGSPKAVQITHGNLY-- 178
Query: 224 SLNVVLTWGMKEGA-------VYLWTLPIFH 247
N M A V + LP+FH
Sbjct: 179 -ANA---EAMFVAAEFDVETDVMVSWLPLFH 205
|
Length = 545 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 60/229 (26%), Positives = 89/229 (38%), Gaps = 32/229 (13%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLT-WGMKEGAVYLWTLPIFHGNGWCFTWSLAAL 260
+TSGT PKGV ++H A L + L + KE V + LP FH G+ L
Sbjct: 190 FTSGTEKLPKGVPLTH-ANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLL 248
Query: 261 CGTSVML--RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVN-APPEDTILPLPHVVNVNT 317
G V+ K I + I E VT + P+ + I+ A +++ LP V +
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVI-- 306
Query: 318 GGSPPPPPILLAMSQKGFRVTHV-----YGLSEINGPATVCAWNPNWDSLPFEAQARLNA 372
G L + K F H+ YG +E C+ P +N+
Sbjct: 307 -GGDAFKDSLYQEALKTF--PHIQLRQGYGTTE-------CS--------PVITINTVNS 348
Query: 373 RQGVKC--MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKN 419
+ C M + G+DVL +P G V+ RG + GYL
Sbjct: 349 PKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE 397
|
Length = 539 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 202 YTSGTTANPKGVLVSHRAAY--LMSLNVVLT---WGMKEGAVYLWTLPIFH 247
YTSGTT +PKGV+ +H + +++L L +E Y LP+ H
Sbjct: 271 YTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAH 321
|
Length = 700 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 90/414 (21%), Positives = 137/414 (33%), Gaps = 62/414 (14%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
+E A P ++V+ + T+ + +R RLA L L +GP V +
Sbjct: 1580 IEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVER------ 1633
Query: 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGL 145
+ M +L AI+ A A V +D +Y E L M S
Sbjct: 1634 ---SLEMVVGLL------------AIL--KAGGAYVPLDPEY---PRERLAYMIEDSG-- 1671
Query: 146 FKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSG 205
L++ R PL L V + E G + + YTSG
Sbjct: 1672 ---IELLLTQSHLQARLPLPDGLRSLVLDQEDDWLEGYSDSNPAVNLAPQNLAYVIYTSG 1728
Query: 206 TTANPKGVLVSHRAAYLMSLNVVLTWGMKEG-------AVYLWTLPIFHGNGWCFTWSLA 258
+T PKG H A L L +E V +T F + W W L
Sbjct: 1729 STGRPKGAGNRHGA-----LVNRLCA-TQEAYQLSAADVVLQFTSFAFDVSVWELFWPL- 1781
Query: 259 ALCGTSVMLRQASA----KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT-ILPLPHVV 313
+ G +++ A + + + I VT P +L ++ + L L VV
Sbjct: 1782 -INGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVV 1840
Query: 314 NVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNAR 373
GG L + GL + GP +W + + R +
Sbjct: 1841 ---CGGEALEVEAL----RPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVP 1893
Query: 374 QGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
G L +LD N P+P GE+ + G + +GYL P E F
Sbjct: 1894 IGQPIANL-STYILDASLN-PVPI--GVAGELYLGGVGLARGYLNRPALTAERF 1943
|
Length = 3956 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 202 YTSGTTANPKGVLVSHRAAYL-MSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TWSLA- 258
YTSGTT PKG + +H + + ++ + +K G LW + GW W +
Sbjct: 107 YTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDM----GWMMGPWLVLG 162
Query: 259 --ALCGTSVMLRQA----SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE 303
L T V+ A +++ + H VT+ +P ++ ++
Sbjct: 163 GLLLGATIVLYEGAPDYPDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDA 213
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 42/196 (21%)
Query: 26 LERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85
++ A +P + Y+ + T+QQ ++ RLA+ + + + + + V P M
Sbjct: 6 IQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLV 65
Query: 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGL 145
G +I GHA + VD + E ++++ +
Sbjct: 66 AFLG--------------------SIKSGHA---YIPVDTS---IPSERIEMIIEAAG-- 97
Query: 146 FKPPVLIVIGDETCDRAPLEYALSKGVT--EYEKLLETGDP-EF-AWKPPRDEWQSIALG 201
P ++I + ++ ++ +T E+ +G P F D + I
Sbjct: 98 --PELVIHTAEL-----SIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYII--- 147
Query: 202 YTSGTTANPKGVLVSH 217
YTSG+T NPKGV +SH
Sbjct: 148 YTSGSTGNPKGVQISH 163
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 60/244 (24%), Positives = 94/244 (38%), Gaps = 43/244 (17%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAAT------VHPTRKSVVYESKHYTWQQTYQR 54
M P LP+ A+F L L+ AA + R + + +Q R
Sbjct: 4 MSPTPTTSSLPRRYADFPTLVEA--LDYAALGEAGMNFYDRRGQLE---EALPYQTLRAR 58
Query: 55 CRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILG 114
A L L + PG V++++ E F G V PL + + G
Sbjct: 59 AEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPV-------PLPLPMGFG 111
Query: 115 HAEAALVFVDQQYFALAEEALKIMEGKSEG--LFKPPVLIVIGDETCDRAPLEYALSKGV 172
E+ ++ Q L+ M ++ + P L+ +E PL + LS
Sbjct: 112 GRES---YIAQ---------LRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLS--- 156
Query: 173 TEYEKLLETGDPEFAWKPPRDEWQSIA-LGYTSGTTANPKGVLVSHRAAYLMS-LNVVLT 230
+ K L D P D IA L Y+SG+T P+GV+++HRA LM+ L +
Sbjct: 157 HAWFKALPEADVALPRPTPDD----IAYLQYSSGSTRFPRGVIITHRA--LMANLRAISH 210
Query: 231 WGMK 234
G+K
Sbjct: 211 DGLK 214
|
Length = 579 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 70/285 (24%), Positives = 104/285 (36%), Gaps = 63/285 (22%)
Query: 190 PPRDEWQSIA-LGYTSGTTANPKGVLVSHR----------AAYLMSLNVVLTWGMKEGAV 238
+ S A L YTSG+T P GV+VSHR + Y V V
Sbjct: 154 ARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDT---TV 210
Query: 239 YLWTLPIFHGNGWCFTWSLAALCGTSVMLR------QASAKAIYKAIAEHGVTNFCAAPI 292
W LP +H G L G +L Q A+ + + +A + F AAP
Sbjct: 211 VSW-LPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWM-QLLASNPHA-FSAAP- 266
Query: 293 VLN-----SIVNAPPEDTI-LPLPHVVNVNTGGSPPPPPILLAMSQK----GFRVTHV-- 340
N ++ +D L L V+ + +G P L + + R T +
Sbjct: 267 --NFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRP 324
Query: 341 -YGLSEINGPATVCAWNPNWDSLP----FEAQARLNARQGVKCMCLEG------------ 383
YGL+E ATV P F+ + L+A +C G
Sbjct: 325 SYGLAE----ATVYVATREPGQPPESVRFDYEK-LSAGHAKRCETGGGTPLVSYGSPRSP 379
Query: 384 -LDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ ++D T PA T+GE+ + G+ V GY + P+ E F
Sbjct: 380 TVRIVDPDTCIECPAG--TVGEIWVHGDNVAAGYWQKPEETERTF 422
|
Length = 578 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
L YTSG+T PKGV+VSH + V+ +GM+ L I N + L
Sbjct: 2338 LIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFYSI---NFDAASERLLV 2394
Query: 260 --LCGTSVMLR---QASAKAIYKAIAEHGVT 285
LCG V+LR Q A+ I + I E V+
Sbjct: 2395 PLLCGARVVLRAQGQWGAEEICQLIREQQVS 2425
|
Length = 4334 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 27/88 (30%)
Query: 179 LETGDPEFA--WKPPRDEWQSIA-LGYTSGTTANPKGVLVSH----------RAAYLMSL 225
++T DP A W+ P + IA L YTSG+TA PKGV VSH R + + L
Sbjct: 147 VDTLDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDL 206
Query: 226 N---VVLTWGMKEGAVYLWTLPIFHGNG 250
N V+++W LP++H G
Sbjct: 207 NPDDVIVSW-----------LPLYHDMG 223
|
Length = 4334 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 61/299 (20%), Positives = 101/299 (33%), Gaps = 27/299 (9%)
Query: 42 ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCIN 101
E TW + ++ LA+AL L + PG VS PN+P GA+ + +
Sbjct: 111 EPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCS 170
Query: 102 FRLNPLNVAIILGHAEAALVFVDQQYFALAEEA---LKIME-GKSEGLFKPPVLIVIGDE 157
V E L+F Y +E K+ E K + V I
Sbjct: 171 PDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPY--- 227
Query: 158 TCDRAPLEYALSKGVTEYEKLLETGDPEFAWKP-PRDEWQSIALGYTSGTTANPKGVLVS 216
R + + + E ++ P D + + ++SGTT PK ++ S
Sbjct: 228 LGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFD--HPLWILFSSGTTGLPKCIVHS 285
Query: 217 HRAAYLMSL-NVVLTWGMKEGAVYLWTLPIFHGNGW-CFTWSLAALC-GTSVMLRQAS-- 271
+ L L + G + + GW + W ++ L G +++L S
Sbjct: 286 AGGTLVQHLKEHGLHCDLGPGDRLFY----YTTTGWMMWNWLVSGLATGATLVLYDGSPG 341
Query: 272 ---AKAIYKAIAEHGVTNFCAAPIVLNSIVNA---PPEDTILPLPHVVNVNTGGSPPPP 324
++ G T F + + + A P L V + GSP PP
Sbjct: 342 FPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQC--VASTGSPLPP 398
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 24/79 (30%), Positives = 33/79 (41%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
YT+ Q RLA+AL +L + G V V P P H V GAV ++
Sbjct: 7 YTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFG 66
Query: 106 PLNVAIILGHAEAALVFVD 124
P V L + A ++ D
Sbjct: 67 PDAVEHRLRDSGARVLVTD 85
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR 103
T+++ +R R+A L I G V ++ P + + F + GAV I+
Sbjct: 1 DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 104 LNPLNVAIILGHAEA 118
+ ++ L AE
Sbjct: 61 MGRKHLGRCLEEAEP 75
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 46 YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105
T+Q+ QR +LA L+ L + G V++L+ N + + GAV+ +N RL
Sbjct: 2 LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLP 61
Query: 106 P 106
Sbjct: 62 Q 62
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 395 IPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+P GK EV ++G V GY + P+ EAF
Sbjct: 406 VPVGGKL--EVRVKGPNVTPGYWRAPELTAEAF 436
|
Length = 614 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 65/298 (21%), Positives = 111/298 (37%), Gaps = 62/298 (20%)
Query: 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLS 77
T L+ L + + A P ++ +++++ ++ LA+ L + + PG +V+V
Sbjct: 458 TTLSAL--VAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVAL 515
Query: 78 PNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKI 137
P V +T A+ AI+ A AA + +D Y ++ LK+
Sbjct: 516 PR---------SVFLTLALH------------AIV--EAGAAWLPLDTGY---PDDRLKM 549
Query: 138 MEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTE-YEKLLETGDPEFAWKP-PRDEW 195
M + P L++ + R + + Y L P
Sbjct: 550 MLEDAR-----PSLLITTADQLPRFA---DVPDLTSLCYNAPLAPQGAAPLQLSQPHHTA 601
Query: 196 QSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV--LTW-----GMKEGAVYLWTLPI-FH 247
I +TSG+T PKGV+V A +V L W + V L P F
Sbjct: 602 YII---FTSGSTGRPKGVMVGQTA-------IVNRLLWMQNHYPLTADDVVLQKTPCSFD 651
Query: 248 GNGWCFTWSLAALCG-TSVMLRQASAK---AIYKAIAEHGVTNFCAAPIVLNSIVNAP 301
+ W F W + G VM + + A+ + AE+GVT P +L + V +
Sbjct: 652 VSVWEFFWPF--IAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASL 707
|
Length = 1296 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 24/102 (23%)
Query: 328 LAMSQKGFRVTHV--YGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLD 385
LA+ G R+ G +E AT W R GV + G +
Sbjct: 312 LAVRTTGERIPMTSGLGATETAPTATFVHW--------------PTDRSGVIGLPAPGTE 357
Query: 386 VLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ + +P GK EV ++G V GY ++P+ EAF
Sbjct: 358 L------KLVPNGGKL--EVRVKGPNVTPGYWRDPELTAEAF 391
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 386 VLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
++ + +P + GE+V+ G V KGYL NP+ EAF
Sbjct: 330 LIIDEEGTKLPDGEQ--GEIVISGPSVSKGYLNNPEKTAEAF 369
|
Length = 503 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 44/198 (22%), Positives = 72/198 (36%), Gaps = 23/198 (11%)
Query: 26 LERAATVHPTRKSVV--YESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83
L AA +H +K V + T+++ L L + + PG V V+ PN
Sbjct: 637 LIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKKNTP-PGENVGVMLPNANGA 695
Query: 84 YEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSE 143
F + G V INF N+ A+ V + + A + E
Sbjct: 696 AVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKAR-----LGPLIE 750
Query: 144 GLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK---LLETGDPEFAWKPPRDEWQSIAL 200
L +I + D + + +K LL P + + ++ L
Sbjct: 751 ALEFGIRIIYLED-----------VRAQIGLADKIKGLLAGRFPLVYFCNRDPDDPAVIL 799
Query: 201 GYTSGTTANPKGVLVSHR 218
+TSG+ PKGV++SHR
Sbjct: 800 -FTSGSEGTPKGVVLSHR 816
|
Length = 1140 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 24/104 (23%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKE---------------GAVYLWTLPIF 246
YT GTT PKGV+ + L + E G +L P+
Sbjct: 10 YTGGTTGMPKGVMWRQEDIF-RVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPLM 68
Query: 247 HGNGWCFTWS-LAALC-GTSVML---RQASAKAIYKAIAEHGVT 285
HG G W L+AL G +V+L + +++ + +H V
Sbjct: 69 HGAG---QWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVN 109
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 98/414 (23%), Positives = 161/414 (38%), Gaps = 61/414 (14%)
Query: 44 KHYTWQQTYQRCRRLAS-ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINF 102
K T+++ Q + A+ L +L + G V+++ PN FGV G L +N
Sbjct: 49 KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAG--LTVVN- 105
Query: 103 RLNPLNVAIILGH-----AEAALVFVD------QQYFALAEEALKIMEGKSEGL-FKPPV 150
+NPL L H + LV +D QQ A I G + L F
Sbjct: 106 -VNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAA 164
Query: 151 LIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRD-EWQSIA-LGYTSGTTA 208
L+ + + EY + G + + L G P E IA L YT GTT
Sbjct: 165 LVNFVVKYVKKLVPEYRI-NGAIRFREALALGRKHSM--PTLQIEPDDIAFLQYTGGTTG 221
Query: 209 NPKGVLVSHR--AAYLMSLN--VVLTWGMKEG-AVYLWTLPIFH-----GNGWCFTWSLA 258
KG +++HR A + + + T ++EG V + LP++H NG F
Sbjct: 222 VAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFM---- 277
Query: 259 ALCGTSVMLRQA-SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
+ G + ++ K + + T F + N ++N P D I + +
Sbjct: 278 KIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQI--DFSSLKMTL 335
Query: 318 GGSPPPPPILLAMSQKGFRVTHV-----YGLSEINGPATVCAWNPNWDSLPFEAQARLNA 372
GG + +++++ +VT + YGL+E + A + NP L
Sbjct: 336 GGG---MAVQRSVAERWKQVTGLTLVEAYGLTETSPAACI---NP----------LTLKE 379
Query: 373 RQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426
G + + D + A G+ IGE+ ++G VMKGY K P+ +
Sbjct: 380 YNGSIGLPIPSTDACIKDDAGTVLAIGE-IGELCIKGPQVMKGYWKRPEETAKV 432
|
Length = 560 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.96 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.94 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.92 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.89 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.87 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.86 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.73 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.71 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.69 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.1 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.47 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 96.25 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 90.73 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 90.7 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 82.78 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 82.59 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 81.29 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 80.26 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=436.49 Aligned_cols=393 Identities=35% Similarity=0.531 Sum_probs=325.8
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHhhCCCc-ceEEECC---eeeeHHHHHHHHHHHHHHHHHcC--CCCCCeEEEEcCCch
Q 048242 8 DDLPKNPANFTALTPLWFLERAATVHPTR-KSVVYES---KHYTWQQTYQRCRRLASALSQLS--IGPGTAVSVLSPNVP 81 (430)
Q Consensus 8 ~~~~~~~~~~~~~t~~~~l~~~~~~~p~~-~a~~~~~---~~~Ty~el~~~~~~la~~L~~~g--v~~g~~V~i~~~n~~ 81 (430)
+.....+.+..+.+....+.+....++++ +++++.. +.+||+|++.++.++|..|.++| +++||+|++++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~ 83 (537)
T KOG1176|consen 4 EKLWKGPANNTPLTPITFLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTP 83 (537)
T ss_pred cccccCcccCccccccccccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCH
Confidence 33444455666666666666666666666 7787755 99999999999999999999875 899999999999999
Q ss_pred hHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCC
Q 048242 82 AMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDR 161 (430)
Q Consensus 82 ~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 161 (430)
++.++++||+++|+++.++||.+.+.++.+.++.++++++|++.+.+..+.++..... ..++.+.......
T Consensus 84 ~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---------~~i~~l~~~~~~~ 154 (537)
T KOG1176|consen 84 EFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---------LKIIVLTGDEGVI 154 (537)
T ss_pred HHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---------CceEEEecccCcc
Confidence 9999999999999999999999999999999999999999999999998887765432 4444444331110
Q ss_pred CcccccccCCccc-hhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEE
Q 048242 162 APLEYALSKGVTE-YEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240 (430)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~ 240 (430)
.. ........ +.++.....+.. ..+...+|++.|+|||||||.||||++||++++.+.......+.....++.+
T Consensus 155 ~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l 229 (537)
T KOG1176|consen 155 SI---SDLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYL 229 (537)
T ss_pred cc---ccccccccchhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEE
Confidence 00 00011111 444444444443 4567789999999999999999999999999999988888888888899999
Q ss_pred eccCchhhhhhHHHHHHHhhcceEEEe-CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecC
Q 048242 241 WTLPIFHGNGWCFTWSLAALCGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGG 319 (430)
Q Consensus 241 ~~~pl~h~~gl~~~~~~l~~g~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G 319 (430)
+.+|++|.+|+...+.+++.|++.+++ +.|++..+++.+++|++|+++++|.++..+.+.+...+.+ ++++|.+.+||
T Consensus 230 ~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~-l~sl~~v~~gg 308 (537)
T KOG1176|consen 230 CTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYD-LSSLRSVLSGG 308 (537)
T ss_pred EechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCccc-CCccEEEEecC
Confidence 999999999999988866665555555 6789999999999999999999999999999998666677 99999999999
Q ss_pred CCCCHHHHHHHH-hcC-cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCC
Q 048242 320 SPPPPPILLAMS-QKG-FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPA 397 (430)
Q Consensus 320 ~~l~~~~~~~~~-~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~ 397 (430)
+++++++.++++ +++ ..+.++||+||+++.++.+...++ .+.+++|++++++ +++|.++. |+.+++
T Consensus 309 a~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e----------~k~~svG~~~~g~-~~~v~~e~-g~~l~~ 376 (537)
T KOG1176|consen 309 APLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE----------RKPGSVGRLLPGV-RVKVLDET-GVSLGP 376 (537)
T ss_pred CCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc----------CcccccCccccce-EEEeeCCC-CCCCCC
Confidence 999999999998 667 899999999999988888765432 4669999999987 66666655 999999
Q ss_pred CCCceeEEEEecCcccccccCCcccchHhhhC
Q 048242 398 DGKTIGEVVMRGNMVMKGYLKNPKANEEAFAN 429 (430)
Q Consensus 398 ~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~d 429 (430)
+ +.||||+||+++++|||+||++|++.|+|
T Consensus 377 ~--~~GEI~vrg~~imkGY~~NpeaT~~~~~~ 406 (537)
T KOG1176|consen 377 N--QTGEICVRGPQVMKGYLKNPEATKEAFDD 406 (537)
T ss_pred C--CceEEEEECcccchhhcCChHHHHhhccc
Confidence 8 88999999999999999999999999965
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-58 Score=409.02 Aligned_cols=390 Identities=20% Similarity=0.252 Sum_probs=338.9
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhc
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMT 93 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 93 (430)
+....|+++.++..++.-||+.|+++. +.++||+||...++++|.+|..+|+++||+|+++.||+.+|+..+|||+++
T Consensus 46 pl~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~A 125 (596)
T KOG1177|consen 46 PLDSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARA 125 (596)
T ss_pred CcccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHh
Confidence 556789999999999999999999984 577999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChhhHHHHHhhcCceEEEecccc-----HHHHHHHHHHhhccC------CCCCCCCeEEEecCCCCCCC
Q 048242 94 GAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY-----FALAEEALKIMEGKS------EGLFKPPVLIVIGDETCDRA 162 (430)
Q Consensus 94 G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~ 162 (430)
|.+.+++||.+...+++..|++.+++++|+.+.+ ++.+.++........ ..++....+|..++..
T Consensus 126 G~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~---- 201 (596)
T KOG1177|consen 126 GLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH---- 201 (596)
T ss_pred ceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC----
Confidence 9999999999999999999999999999998643 445555555444322 1345566677666321
Q ss_pred cccccccCCccchhhhhhcCCCCCCC-----CCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCC
Q 048242 163 PLEYALSKGVTEYEKLLETGDPEFAW-----KPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA 237 (430)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~ 237 (430)
...|.+.++|++..+..+... .....++|.+.|.|||||||.|||+.+||.|++++......++++.+++
T Consensus 202 -----~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~ 276 (596)
T KOG1177|consen 202 -----PLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKH 276 (596)
T ss_pred -----cCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcce
Confidence 346778888888776654221 1235679999999999999999999999999999999999999999999
Q ss_pred EEEeccCchhhhhhH-HHHHHHhhcceEEEe-CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEE
Q 048242 238 VYLWTLPIFHGNGWC-FTWSLAALCGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNV 315 (430)
Q Consensus 238 ~~~~~~pl~h~~gl~-~~~~~l~~g~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v 315 (430)
++.+..|+||.+|.. ..+.++..|+++|++ +.|++...+++|+++++|.++++|++|..+++.+.....+ ++++|..
T Consensus 277 ~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~-~s~lr~~ 355 (596)
T KOG1177|consen 277 RICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD-LSSLRKG 355 (596)
T ss_pred EEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc-hhhhhhh
Confidence 999999999999966 577888899999996 5799999999999999999999999999999999888888 9999999
Q ss_pred eecCCCCCHHHHHHHH-hcCcE-EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCC
Q 048242 316 NTGGSPPPPPILLAMS-QKGFR-VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQ 393 (430)
Q Consensus 316 ~~~G~~l~~~~~~~~~-~~~~~-v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~ 393 (430)
+.||+++|+++.+.+. +.++. +...||+||++...++.... +...+...++|+.+++. +..|+|.+ |.
T Consensus 356 vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~--------D~~~~~~ksVG~~m~h~-Ea~iv~~~-g~ 425 (596)
T KOG1177|consen 356 VIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLG--------DPPEERIKSVGHLMDHY-EAAIVDKD-GS 425 (596)
T ss_pred eeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCC--------CCHHHHHhhhhhccccc-ccccccCC-CC
Confidence 9999999999999998 55655 78899999999888877654 33455678999999999 99999977 99
Q ss_pred CCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 394 PIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 394 ~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
.++.+ ..|||++||.++|.|||++++.|.+..
T Consensus 426 ~v~~~--~~Gel~iRGY~tMl~Ywg~~~kT~eti 457 (596)
T KOG1177|consen 426 EVPLG--TKGELLIRGYSTMLGYWGEEEKTKETI 457 (596)
T ss_pred ccccC--CCceEEEEechhheeecCCcccchhhc
Confidence 99999 789999999999999999999887654
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=440.33 Aligned_cols=384 Identities=29% Similarity=0.400 Sum_probs=318.8
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEECCee--eeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYESKH--YTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~--~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
......++.+++.+.++.+|+++|+++.+.. +||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||++
T Consensus 6 ~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~ 85 (534)
T COG0318 6 RMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALR 85 (534)
T ss_pred cccccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4456789999999999999999999998876 99999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
+|++++|++|.++..++.++++.++++.++++.+............+ ....+......... ..
T Consensus 86 ~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~- 148 (534)
T COG0318 86 AGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALP-------VVLVVLLVGDADDR---------LP- 148 (534)
T ss_pred cCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCC-------cceEEEeccccccc---------cc-
Confidence 99999999999999999999999999999999884444443332111 11222222211100 00
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC--CCCCCEEEeccCchhhhh
Q 048242 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG--MKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~pl~h~~g 250 (430)
..+.+................++++++++|||||||.||||++||+|++.+.......+. ++.+|++++++|+||.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~G 228 (534)
T COG0318 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFG 228 (534)
T ss_pred ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHH
Confidence 244554333322222222367899999999999999999999999999999898888888 899999999999999999
Q ss_pred hHHHHHH-HhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCc-eeEEeecCCCCCHHH
Q 048242 251 WCFTWSL-AALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPH-VVNVNTGGSPPPPPI 326 (430)
Q Consensus 251 l~~~~~~-l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~-lr~v~~~G~~l~~~~ 326 (430)
+...+.+ ++.|+++++.+ .|++..++..+.++++|+++++|+++..++........+ +++ ||.++.||+++++++
T Consensus 229 l~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~-~~~~lr~~~~gg~~~~~~~ 307 (534)
T COG0318 229 LIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDD-LSSSLRLVLSGGAPLPPEL 307 (534)
T ss_pred HHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccc-cccceEEEEecCCcCCHHH
Confidence 9976666 77788888887 599999999999999999999999999999988777665 565 999999999999999
Q ss_pred HHHHH-hcC-cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeE
Q 048242 327 LLAMS-QKG-FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGE 404 (430)
Q Consensus 327 ~~~~~-~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Ge 404 (430)
.++++ .++ ..+.+.||+||+++.++.+...+ ...+.+++|+|++++ +++|+|++.++++| | ++||
T Consensus 308 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~~~G~~~pg~-~v~Ivd~~~~~~~p-g--~vGe 374 (534)
T COG0318 308 LERFEERFGPIAILEGYGLTETSPVVTINPPDD---------LLAKPGSVGRPLPGV-EVRIVDPDGGEVLP-G--EVGE 374 (534)
T ss_pred HHHHHHHhCCCceEEeecccccCceeecCCCch---------hhhcCCcccccCCCc-EEEEEeCCCCccCC-C--CceE
Confidence 99999 666 57999999999987777654331 023557789999999 99999998555666 5 7999
Q ss_pred EEEecCcccccccCCcccchHhhhC
Q 048242 405 VVMRGNMVMKGYLKNPKANEEAFAN 429 (430)
Q Consensus 405 l~v~g~~v~~gY~~~~~~t~~~f~d 429 (430)
|+++||+++.|||++|+.|++.|.+
T Consensus 375 i~irgp~v~~GY~~~pe~t~~~f~~ 399 (534)
T COG0318 375 IWVRGPNVMKGYWNRPEATAEAFDE 399 (534)
T ss_pred EEEECchhhhhhcCChHHHHHhhcc
Confidence 9999999999999999999998864
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-56 Score=449.88 Aligned_cols=393 Identities=17% Similarity=0.211 Sum_probs=308.6
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCcceEEEC-----CeeeeHHHHHHHHHHHHHHHHH---cCCCCC-----------CeEE
Q 048242 14 PANFTALTPLWFLERAATVHPTRKSVVYE-----SKHYTWQQTYQRCRRLASALSQ---LSIGPG-----------TAVS 74 (430)
Q Consensus 14 ~~~~~~~t~~~~l~~~~~~~p~~~a~~~~-----~~~~Ty~el~~~~~~la~~L~~---~gv~~g-----------~~V~ 74 (430)
.+.+...|+.++|.+.++.+|+++|+++. .+++||+|+.+++.++|+.|.+ +|+++| |+|+
T Consensus 55 ~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~ 134 (746)
T PTZ00342 55 SSLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLG 134 (746)
T ss_pred ccccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEE
Confidence 44455789999999999999999999973 2689999999999999999997 499998 8999
Q ss_pred EEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEe
Q 048242 75 VLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVI 154 (430)
Q Consensus 75 i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 154 (430)
|+++|+++|+++.+||+++|++++|+++.++++++.+++++++++++|++.+....+.+.....+ ..+.++.+
T Consensus 135 i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~-------~l~~ii~~ 207 (746)
T PTZ00342 135 LYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELP-------HLKKLIIL 207 (746)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCC-------CceEEEEE
Confidence 99999999999999999999999999999999999999999999999998776665554433333 55677777
Q ss_pred cCCCCCC-----------------Ccc------------------------cc--------------c--ccCCccchhh
Q 048242 155 GDETCDR-----------------APL------------------------EY--------------A--LSKGVTEYEK 177 (430)
Q Consensus 155 ~~~~~~~-----------------~~~------------------------~~--------------~--~~~~~~~~~~ 177 (430)
++..... ... .+ . .......|++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 287 (746)
T PTZ00342 208 DTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDD 287 (746)
T ss_pred CCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHH
Confidence 6521110 000 00 0 0000112333
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc--CCCCCCEEEeccCchhhhhhHHHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW--GMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
........ .......++|++.|+|||||||.||||++||+|+++++....... .....+++++.+|++|++++...+
T Consensus 288 ~~~~~~~~-~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~ 366 (746)
T PTZ00342 288 MTKNKTTN-YKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAY 366 (746)
T ss_pred HHhhcccC-CCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHH
Confidence 32221111 111234679999999999999999999999999988876654332 233568999999999999998888
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcC--------CCCCC----------------------
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNA--------PPEDT---------------------- 305 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~--------~~~~~---------------------- 305 (430)
.+++.|+++++.+. ++..+++.|+++++|+++++|.+|+++... +....
T Consensus 367 ~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 445 (746)
T PTZ00342 367 LSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFL 445 (746)
T ss_pred HHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHH
Confidence 88889999988865 899999999999999999999999999752 10000
Q ss_pred ------------CCCCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhcc
Q 048242 306 ------------ILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNA 372 (430)
Q Consensus 306 ------------~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (430)
.. .++||.+++||+++++++.++++ .+|++++++||+||+++.++.+... ....+
T Consensus 446 ~~~~~v~~kir~~l-g~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~-----------~~~~g 513 (746)
T PTZ00342 446 EGITHISSKIKDKV-NPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHAD-----------DNNTE 513 (746)
T ss_pred HHHHHHHHHHHHhh-CCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCC-----------CCCcc
Confidence 01 26899999999999999999998 6799999999999997766554321 12458
Q ss_pred ccCCcc-ccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh-CC
Q 048242 373 RQGVKC-MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA-NG 430 (430)
Q Consensus 373 ~vG~~~-~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~-dg 430 (430)
++|+|+ |++ +++|+|.+++.....+ +.|||+++||++|.|||++|++|+++|. ||
T Consensus 514 svG~p~~pg~-e~ki~d~~~~~~~~~~--~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dG 570 (746)
T PTZ00342 514 SIGGPISPNT-KYKVRTWETYKATDTL--PKGELLIKSDSIFSGYFLEKEQTKNAFTEDG 570 (746)
T ss_pred cccCcCCCcE-EEEEecccccccCCCC--CceEEEEecCcccccccCChhhhhhhcCcCC
Confidence 999998 999 9999986545555544 5799999999999999999999999994 65
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-55 Score=447.15 Aligned_cols=392 Identities=17% Similarity=0.215 Sum_probs=300.3
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEC----C-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHH
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYE----S-----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFG 89 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 89 (430)
..|+.++|++.++.+|+++|+.+. + +++||+||.++++++|+.|.++|+++||+|+|+++|+++|++++||
T Consensus 44 ~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA 123 (666)
T PLN02614 44 MDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123 (666)
T ss_pred CCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 458999999999999999999842 1 3589999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccccc
Q 048242 90 VPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALS 169 (430)
Q Consensus 90 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (430)
|+++|++++|++|.++++++.++++.++++++|++.+....+....... ......++.+++.............
T Consensus 124 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~------~~~l~~vi~~~~~~~~~~~~~~~~~ 197 (666)
T PLN02614 124 CNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNS------TEYMKTVVSFGGVSREQKEEAETFG 197 (666)
T ss_pred HHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccc------cccceEEEEeCCCChHHhhhhhhcC
Confidence 9999999999999999999999999999999999876543332211100 0023456665432100000000000
Q ss_pred CCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc-----CCCCCCEEEeccC
Q 048242 170 KGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW-----GMKEGAVYLWTLP 244 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p 244 (430)
....++.+++..............++|+++|+|||||||.||||++||+|+...+.+....+ +++.+|++++.+|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lP 277 (666)
T PLN02614 198 LVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLP 277 (666)
T ss_pred cEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEecc
Confidence 11345666654332211111234678999999999999999999999999988777655443 5678999999999
Q ss_pred chhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC---------------------
Q 048242 245 IFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--------------------- 303 (430)
Q Consensus 245 l~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--------------------- 303 (430)
++|.+++...+.++..|+++++.+ +++..+++.|++++||+++++|.+++.+......
T Consensus 278 l~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 356 (666)
T PLN02614 278 LAHIFDRVIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKF 356 (666)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999876666777899888775 6899999999999999999999999988642100
Q ss_pred ------------CC-----------CCCCCceeEEeecCCCCCHHHHHHHHhc-CcEEEeeecCccccccccccccCCCC
Q 048242 304 ------------DT-----------ILPLPHVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNW 359 (430)
Q Consensus 304 ------------~~-----------~~~l~~lr~v~~~G~~l~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~ 359 (430)
.. ..-.++||.+++||+++++++.+.++.+ +++++++||+||+++.++.....+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-- 434 (666)
T PLN02614 357 GNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDE-- 434 (666)
T ss_pred HHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeecccc--
Confidence 00 0001689999999999998875555566 589999999999876544322110
Q ss_pred CCCChhhhhhhccccCCccccccceEEeeC-C-CCCCCCCCCCceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 360 DSLPFEAQARLNARQGVKCMCLEGLDVLDT-K-TNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 360 ~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~-~-~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
..+.+++|+|+|++ +++|+|. + .+++++.| +.|||+|+||++|.|||++|++|++.|.||
T Consensus 435 --------~~~~gsvG~p~pg~-evki~d~~~~~~~~~~~g--~~GEl~vrGp~v~~GY~~~pe~T~~~f~dG 496 (666)
T PLN02614 435 --------LDMLGTVGPPVPNV-DIRLESVPEMEYDALAST--PRGEICIRGKTLFSGYYKREDLTKEVLIDG 496 (666)
T ss_pred --------CCcCCcccCcCCce-EEEEeeecccCcccCCCC--CCceEEEcCCcccccccCCHHHhhhhhccC
Confidence 12348999999999 9999983 3 24778877 899999999999999999999999999775
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-55 Score=441.54 Aligned_cols=391 Identities=21% Similarity=0.219 Sum_probs=310.2
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEE---CC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHH
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVY---ES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVH 87 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~---~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 87 (430)
....++.++|++.++.+|+++|+.+ .+ +++||+||.++++++|+.|+++|+++||+|+|+++|+++|++++
T Consensus 41 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~ 120 (651)
T PLN02736 41 PEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD 120 (651)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence 3456899999999999999999953 11 56999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccc
Q 048242 88 FGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA 167 (430)
Q Consensus 88 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (430)
+||+++|++++|+++.++.+++.++++.++++++|++.+....+.......+ ..+.++.+++...........
T Consensus 121 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~ 193 (651)
T PLN02736 121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIP-------SVRLIVVVGGADEPLPSLPSG 193 (651)
T ss_pred HHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCC-------CceEEEEECCCchhhhhhhcc
Confidence 9999999999999999999999999999999999999876665554433222 445566554321100000000
Q ss_pred ccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchh
Q 048242 168 LSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h 247 (430)
.......|++++..............++++++|+|||||||.||||++||+++..++.+....+++..+|++++.+|++|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h 273 (651)
T PLN02736 194 TGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAH 273 (651)
T ss_pred CCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHH
Confidence 11123566666654322221223356799999999999999999999999999999888888888999999999999999
Q ss_pred hhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCC-------------------------
Q 048242 248 GNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP------------------------- 302 (430)
Q Consensus 248 ~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~------------------------- 302 (430)
.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|.+++.+.+...
T Consensus 274 ~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (651)
T PLN02736 274 IYERVNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQAL 352 (651)
T ss_pred HHHHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 9999888888889999888764 78899999999999999999999988765310
Q ss_pred ----CCC------------CCCC-CceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCCh
Q 048242 303 ----EDT------------ILPL-PHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPF 364 (430)
Q Consensus 303 ----~~~------------~~~l-~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~ 364 (430)
... .. + ++||.+++||+++++++.++++ .+|+++++.||+||+++.++.....
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~-lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~-------- 423 (651)
T PLN02736 353 ENGKNPSPMWDRLVFNKIKAK-LGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEG-------- 423 (651)
T ss_pred HcCCCCCchHHHHHHHHHHHH-hcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCC--------
Confidence 000 00 1 5899999999999999999998 6799999999999997766543321
Q ss_pred hhhhhhccccCCccccccceEEeeCCCCCCC---CCCCCceeEEEEecCcccccccCCcccchHhhh-CC
Q 048242 365 EAQARLNARQGVKCMCLEGLDVLDTKTNQPI---PADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA-NG 430 (430)
Q Consensus 365 ~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~---~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~-dg 430 (430)
....+++|+|+|++ +++|+|.+.+... ..+ +.|||+++||++|.|||++++.|++.|. ||
T Consensus 424 ---~~~~~~vG~p~pg~-~v~i~d~~~~~~~~~~~~~--~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dg 487 (651)
T PLN02736 424 ---DNLSGHVGSPNPAC-EVKLVDVPEMNYTSEDQPY--PRGEICVRGPIIFKGYYKDEVQTREVIDEDG 487 (651)
T ss_pred ---CCCCCccCCccCce-EEEEEEccccCcccCCCCC--CCceEEecCCccccccccCHHHHHhhhccCC
Confidence 12357899999999 9999995423322 222 4699999999999999999999999984 54
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-55 Score=422.83 Aligned_cols=376 Identities=27% Similarity=0.345 Sum_probs=293.6
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcC
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYE----SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTG 94 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~----~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 94 (430)
..++..++.+.++.+|+.+++... .+.+||+|+.+++.++|.+|...|+.+||+|+|+..|+++|+++.+||+.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g 94 (613)
T COG1022 15 IHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALG 94 (613)
T ss_pred cccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 457889999999999998888864 3899999999999999999999999779999999999999999999999999
Q ss_pred CeeeeccccCChhhHHHHHhhcCceEEEeccccHH-HHHHHHHHhhccCCCCCCCCeEEEecC----CCCCC-Ccccccc
Q 048242 95 AVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA-LAEEALKIMEGKSEGLFKPPVLIVIGD----ETCDR-APLEYAL 168 (430)
Q Consensus 95 ~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~-~~~~~~~ 168 (430)
++.+|+.+..+++++.++|+++.+++||++.+... .+.......+ ....++...+ ...+. ...+...
T Consensus 95 ~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (613)
T COG1022 95 AVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCP-------KVVDLIVIIDLVREAVEAKALVLEVFP 167 (613)
T ss_pred CeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhcccc-------chhhhhhhhhhhhhccchhhccccccc
Confidence 99999999999999999999999999999985433 3333322111 0111110000 00000 0000000
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC-CCCCCEEEeccCchh
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG-MKEGAVYLWTLPIFH 247 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~pl~h 247 (430)
..+...+ . ..... ......+..++|+|.|+|||||||.||||++||+|+.+++.......+ ++.+|+.++.+|+.|
T Consensus 168 ~~~~~~~-~-~~~~~-~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaH 244 (613)
T COG1022 168 DEGISLF-L-IDSAG-LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAH 244 (613)
T ss_pred cccchhh-h-hcccc-cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHH
Confidence 0111111 0 11111 111114567899999999999999999999999999999999999997 999999999999999
Q ss_pred hhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCC-------C-CC---------------
Q 048242 248 GNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP-------P-ED--------------- 304 (430)
Q Consensus 248 ~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~-------~-~~--------------- 304 (430)
++.+.+..... .++........++..+++.+++++||+++++|.+|+.+.+.. . ..
T Consensus 245 i~Er~~~~~~~-~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~ 323 (613)
T COG1022 245 IFERAFEGGLA-LYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKI 323 (613)
T ss_pred HHHHHHHHHHH-hhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 99998743322 333333444468999999999999999999999999987420 0 00
Q ss_pred ------------------------CCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEeeecCccccccccccccCCCCC
Q 048242 305 ------------------------TILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360 (430)
Q Consensus 305 ------------------------~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~ 360 (430)
....-.++|++++||+++++++...++..|+++.++||+||+++.++++.+..
T Consensus 324 ~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~~~--- 400 (613)
T COG1022 324 SRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDR--- 400 (613)
T ss_pred HhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEccccC---
Confidence 00102489999999999999999999999999999999999999999876543
Q ss_pred CCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh-CC
Q 048242 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA-NG 430 (430)
Q Consensus 361 ~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~-dg 430 (430)
.+.+++|+|+|++ +++|.|. |||+||||+||+|||++|+.|+++|. ||
T Consensus 401 --------~~~gtvG~p~p~~-evKI~d~-------------GEilVRG~~Vm~GYyk~pe~Taeaf~~DG 449 (613)
T COG1022 401 --------FVLGTVGKPLPGI-EVKIADD-------------GEILVRGPNVMKGYYKNPEATAEAFTEDG 449 (613)
T ss_pred --------cccCCcCCcCCCc-eEEEccC-------------ceEEEecchhcchhcCChHHHhhhccccC
Confidence 3569999999999 9999882 99999999999999999999999995 76
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-55 Score=415.32 Aligned_cols=394 Identities=22% Similarity=0.225 Sum_probs=325.4
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHH
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYES--------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
....|++++|.+.++.+|+.+++.... +++||.|..+++.+++..|++.|+++++.|+|+..|++||+++..
T Consensus 72 ~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~ 151 (691)
T KOG1256|consen 72 DGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEM 151 (691)
T ss_pred CCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHH
Confidence 467899999999999999999998743 799999999999999999999999999999999999999999999
Q ss_pred HhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecc-ccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccc
Q 048242 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ-QYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA 167 (430)
Q Consensus 89 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (430)
||...|++.+||...++++.++++++.+.+.++|+++ +....+.+..... .++..+.+|.+++...........
T Consensus 152 a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~-----~~~~LK~iI~~~~~~~~~~~~~~~ 226 (691)
T KOG1256|consen 152 ACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKEND-----SLPSLKAIIQLDEPSDELKEKAEN 226 (691)
T ss_pred HHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccc-----cCccceeEEEecCCchhhhhhhhc
Confidence 9999999999999999999999999999999999995 4444444333210 123678899998765433333333
Q ss_pred ccCCccchhhhhhcCCCCCCCC-CCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHH---Hhhc---CCCCCCEEE
Q 048242 168 LSKGVTEYEKLLETGDPEFAWK-PPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNV---VLTW---GMKEGAVYL 240 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~---~~~~---~~~~~~~~~ 240 (430)
....+.+|+++.+.+....... .+..++|.|.|.|||||||.||||++||+|+...+... .... ....+|+++
T Consensus 227 ~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~l 306 (691)
T KOG1256|consen 227 NGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYL 306 (691)
T ss_pred CCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEE
Confidence 3345899999999887665544 47889999999999999999999999999998755432 1111 223479999
Q ss_pred eccCchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC----------------
Q 048242 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED---------------- 304 (430)
Q Consensus 241 ~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~---------------- 304 (430)
+.+||.|++....-......|+.+-+++ -|+..+.+.|++.+||.+.++|.+|+++.+...+.
T Consensus 307 SyLPLAHi~er~~~~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~ 385 (691)
T KOG1256|consen 307 SYLPLAHIFERVVELYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAM 385 (691)
T ss_pred EeCcHHHHHHHHHHHhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999999998777778899998887 48899999999999999999999999997521000
Q ss_pred ------------C--CC-------------C-CCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCcccccccccccc
Q 048242 305 ------------T--IL-------------P-LPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAW 355 (430)
Q Consensus 305 ------------~--~~-------------~-l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~ 355 (430)
. .+ . -..+|.+++|++|+++++.+.++ .+|++|+++||+||+++.++....
T Consensus 386 ~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~ 465 (691)
T KOG1256|consen 386 AYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLP 465 (691)
T ss_pred HHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccC
Confidence 0 01 0 25899999999999999999999 558999999999999866655443
Q ss_pred CCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhh-hCC
Q 048242 356 NPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
.+ ...+++|.|+|++ +++++|..+-+.-+.+ ..|||||||++||+|||+||++|.++| +||
T Consensus 466 ~d-----------~~lgsvG~p~p~~-~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG 527 (691)
T KOG1256|consen 466 GD-----------NVLGSVGPPVPGN-EVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG 527 (691)
T ss_pred CC-----------CCCCCcCCcccCc-eEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence 32 1459999999999 9999998767777777 569999999999999999999999999 566
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=437.27 Aligned_cols=392 Identities=20% Similarity=0.285 Sum_probs=300.3
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEEC-------C--eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHH
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYE-------S--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~-------~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
...|+.++|++.++++|+++|+.+. + +++||+||.++++++|+.|.++|+++||+|+|+++|+++|++++|
T Consensus 41 ~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l 120 (660)
T PLN02861 41 DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3468999999999999999999741 1 579999999999999999999999999999999999999999999
Q ss_pred HhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccc
Q 048242 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYAL 168 (430)
Q Consensus 89 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (430)
||+++|++++||+|.++.+++.++++.++++++|++.+....+........ ...+.++.+++............
T Consensus 121 A~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~------~~l~~ii~~~~~~~~~~~~~~~~ 194 (660)
T PLN02861 121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCS------SNLKTIVSFGDVSSEQKEEAEEL 194 (660)
T ss_pred HHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCC------CCCEEEEEECCCChhhhhhhhcC
Confidence 999999999999999999999999999999999998765444333222111 02455666654211000000000
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC-----CCCCCEEEecc
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG-----MKEGAVYLWTL 243 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~-----~~~~~~~~~~~ 243 (430)
.....+|.+++....... ...+..++|+++|+|||||||.||||++||.+++..+......++ +..+|++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~-~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~l 273 (660)
T PLN02861 195 GVSCFSWEEFSLMGSLDC-ELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYL 273 (660)
T ss_pred CcEEEEHHHHHHhCcccC-CCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEEC
Confidence 112245666654332211 112346799999999999999999999999999888776655443 46789999999
Q ss_pred CchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCC----------------------
Q 048242 244 PIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP---------------------- 301 (430)
Q Consensus 244 pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~---------------------- 301 (430)
|++|.+++...+.+++.|+++++. .+++..+++.|+++++|+++++|.+++.+....
T Consensus 274 Pl~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~ 352 (660)
T PLN02861 274 PLAHVYDQVIETYCISKGASIGFW-QGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYK 352 (660)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEe-CCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 999999988766788889998877 468999999999999999999999999886410
Q ss_pred ---------------CCCCCC------CC-CceeEEeecCCCCCHHHHHHHHhcCc-EEEeeecCccccccccccccCCC
Q 048242 302 ---------------PEDTIL------PL-PHVVNVNTGGSPPPPPILLAMSQKGF-RVTHVYGLSEINGPATVCAWNPN 358 (430)
Q Consensus 302 ---------------~~~~~~------~l-~~lr~v~~~G~~l~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~~~ 358 (430)
...... .+ ++||.+++||+++++++.+.++.++. .++++||+||+++.++......
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~- 431 (660)
T PLN02861 353 LGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANV- 431 (660)
T ss_pred HHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeeccccc-
Confidence 000000 02 58999999999999998765556664 7999999999976655432110
Q ss_pred CCCCChhhhhhhccccCCccccccceEEeeC-CCC-CCCCCCCCceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 359 WDSLPFEAQARLNARQGVKCMCLEGLDVLDT-KTN-QPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 359 ~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~-~~~-~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
....+++|+|++++ +++|+|. +.| ..++.+ +.|||+++|++++.|||++|++|++.|.||
T Consensus 432 ---------~~~~gsvG~p~p~~-ev~i~d~~~~g~~~~~~~--~~GEi~vrGp~v~~GY~~~pe~T~~~f~dG 493 (660)
T PLN02861 432 ---------FSMVGTVGVPMTTI-EARLESVPEMGYDALSDV--PRGEICLRGNTLFSGYHKRQDLTEEVLIDG 493 (660)
T ss_pred ---------CCCCCCccCccCce-EEEEEEccccCcccCCCC--CceeEEEcCCcccccccCCHHHHHhhhhcc
Confidence 11347999999999 9999983 324 333444 679999999999999999999999999765
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-53 Score=430.96 Aligned_cols=392 Identities=19% Similarity=0.200 Sum_probs=302.8
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEEC------------C-----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEE
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYE------------S-----------KHYTWQQTYQRCRRLASALSQLSIGPGTAVS 74 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~------------~-----------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 74 (430)
...|+.++|++.++.+|+++|+.+. + +++||+|+.++++++|+.|.+.|+++||+|+
T Consensus 56 ~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Va 135 (696)
T PLN02387 56 GATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVA 135 (696)
T ss_pred CCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 3468999999999999999999531 1 3489999999999999999999999999999
Q ss_pred EEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEe
Q 048242 75 VLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVI 154 (430)
Q Consensus 75 i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 154 (430)
|+++|++||+++++||+++|++++|+++.++++++.+++++++++++|++.+....+.......+ ....++.+
T Consensus 136 i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~-------~l~~ii~~ 208 (696)
T PLN02387 136 IFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLE-------TVKRVIYM 208 (696)
T ss_pred EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccC-------CceEEEEE
Confidence 99999999999999999999999999999999999999999999999998876665555443333 56677777
Q ss_pred cCCCCCCCcc-cccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc-C
Q 048242 155 GDETCDRAPL-EYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW-G 232 (430)
Q Consensus 155 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~-~ 232 (430)
++........ .........+|.++...+...........++|+++|+|||||||.||||++||+|+..++......+ .
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~ 288 (696)
T PLN02387 209 DDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPK 288 (696)
T ss_pred CCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCC
Confidence 6532110000 0001112345666665443222222334689999999999999999999999999998887766554 5
Q ss_pred CCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCC------C--HHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC
Q 048242 233 MKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQA------S--AKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED 304 (430)
Q Consensus 233 ~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~------~--~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~ 304 (430)
+..+|++++.+|++|.+++...+.++..|+++.+.... + +..++..++++++|+++++|.+++.+.+.....
T Consensus 289 ~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~ 368 (696)
T PLN02387 289 LGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKK 368 (696)
T ss_pred CCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHH
Confidence 78899999999999999998766667777776554321 1 234567899999999999999999986431100
Q ss_pred ---------------------------------C-------------CCCCCceeEEeecCCCCCHHHHHHHH-hcCcEE
Q 048242 305 ---------------------------------T-------------ILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRV 337 (430)
Q Consensus 305 ---------------------------------~-------------~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v 337 (430)
. ....+++|.+++||+++++++.+.++ .+|+++
T Consensus 369 ~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v 448 (696)
T PLN02387 369 VDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPI 448 (696)
T ss_pred HhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCe
Confidence 0 00015899999999999999998888 579999
Q ss_pred EeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCC-CCCCceeEEEEecCcccccc
Q 048242 338 THVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIP-ADGKTIGEVVMRGNMVMKGY 416 (430)
Q Consensus 338 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~-~~~~~~Gel~v~g~~v~~gY 416 (430)
+++||+||+++.++.+...+ ...+++|+|++++ +++|+|.+++.... ....+.|||+|+|+++|+||
T Consensus 449 ~~~YG~TEt~~~~~~~~~~~-----------~~~gsvG~p~p~~-evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY 516 (696)
T PLN02387 449 GQGYGLTETCAGATFSEWDD-----------TSVGRVGPPLPCC-YVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGY 516 (696)
T ss_pred eEeechhhcccceeecCccc-----------CCCCccCCCCCce-EEEEeeccccCcccCCCCCCCceEEeccCcccchh
Confidence 99999999987666543211 2347899999999 99999944343322 11114699999999999999
Q ss_pred cCCcccchHhhh
Q 048242 417 LKNPKANEEAFA 428 (430)
Q Consensus 417 ~~~~~~t~~~f~ 428 (430)
|++|++|++.|.
T Consensus 517 ~~~pe~T~~~f~ 528 (696)
T PLN02387 517 FKNQEKTDEVYK 528 (696)
T ss_pred cCCHHHHhhhhc
Confidence 999999999983
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=415.50 Aligned_cols=429 Identities=73% Similarity=1.239 Sum_probs=333.0
Q ss_pred CCCCCCCCcCCCCCCCCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCc
Q 048242 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV 80 (430)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~ 80 (430)
|-..++++++-...+.+...++.+++++.+..+|+++|+++.+..+||+||.++++++|+.|.+.|+++||+|+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~ 80 (567)
T PLN02479 1 MAKERDIDDLPKNAANYTALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNI 80 (567)
T ss_pred CccccccccccCccccccccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCc
Confidence 55677888888888888888999999999999999999999889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCC
Q 048242 81 PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCD 160 (430)
Q Consensus 81 ~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 160 (430)
++++++++||+++|++++|++|..+.+++.++++.++++++++++++.+.+.+.................++.+++....
T Consensus 81 ~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (567)
T PLN02479 81 PAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCD 160 (567)
T ss_pred HHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCC
Confidence 99999999999999999999999999999999999999999999887665555433222100000122334444432211
Q ss_pred CCcccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEE
Q 048242 161 RAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240 (430)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~ 240 (430)
..........+...+.+++....+..........++.++++|||||||.||+|+++|+++..........++++.+++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T PLN02479 161 PKSLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYL 240 (567)
T ss_pred ccccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEE
Confidence 11111112234455666665443322211223345678899999999999999999999877666666677888999999
Q ss_pred eccCchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCC-CCCCceeEEeecC
Q 048242 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTI-LPLPHVVNVNTGG 319 (430)
Q Consensus 241 ~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~-~~l~~lr~v~~~G 319 (430)
+.+|++|.+++...+...+.++..+++..+++..+++.++++++|+++++|.+++.+......... . +++++.++++|
T Consensus 241 ~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-~~~l~~~~~~G 319 (567)
T PLN02479 241 WTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILP-LPRVVHVMTAG 319 (567)
T ss_pred EecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccccc-ccceeEEEEcC
Confidence 999999999987665554556666666778999999999999999999999999999876543332 3 78999999999
Q ss_pred CCCCHHHHHHHHhcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCC
Q 048242 320 SPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADG 399 (430)
Q Consensus 320 ~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~ 399 (430)
+++++.+.+++++.+.++++.||+||+++.++.+...++|...+.........++|.+.+++..++|+|++++++++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g 399 (567)
T PLN02479 320 AAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADG 399 (567)
T ss_pred CCCCHHHHHHHHhcCCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCC
Confidence 99999999999877999999999999976655544333333222211112224678888888338999977688887654
Q ss_pred CceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 400 KTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 400 ~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
++.|||+++|++++.|||++++.|.+.|.+|
T Consensus 400 ~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g 430 (567)
T PLN02479 400 KTMGEIVMRGNMVMKGYLKNPKANEEAFANG 430 (567)
T ss_pred CCceEEEEeccchhhhhhcCcccccchhcCC
Confidence 4689999999999999999999999998654
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=418.10 Aligned_cols=371 Identities=19% Similarity=0.245 Sum_probs=310.8
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
.++.++|++.++.+|+++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~ 128 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIIL 128 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhh
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL 179 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
+++.++.+++.++++.++++++|++.+....+........ ....++...+... ....++..+++++
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 194 (549)
T PRK07788 129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLG-------RLRAWGGNPDDDE-------PSGSTDETLDDLI 194 (549)
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccc-------cceEEEEecCccc-------cCCcCcccHHHHh
Confidence 9999999999999999999999999876655444321111 1122221111110 0113445667666
Q ss_pred hcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHh
Q 048242 180 ETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~ 259 (430)
....... .+...++.++++|||||||.||+|.++|.++.+.+......+++..++++++..|++|.+|+...+.++.
T Consensus 195 ~~~~~~~---~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~ 271 (549)
T PRK07788 195 AGSSTAP---LPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMA 271 (549)
T ss_pred cCCCCCC---CCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHH
Confidence 5433221 2234568899999999999999999999999988888888888999999999999999999988888889
Q ss_pred hcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcE
Q 048242 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFR 336 (430)
Q Consensus 260 ~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~ 336 (430)
.|+++++...+++..+++.++++++|+++++|+++..+++.... ...+ +++||.+++||+++++++.++++ .++.+
T Consensus 272 ~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~~ 350 (549)
T PRK07788 272 LGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYD-TSSLKIIFVSGSALSPELATRALEAFGPV 350 (549)
T ss_pred hCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCC-CCceeEEEEeCCCCCHHHHHHHHHHhCcc
Confidence 99999998889999999999999999999999999999987654 3444 88999999999999999999998 67999
Q ss_pred EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccc
Q 048242 337 VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGY 416 (430)
Q Consensus 337 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY 416 (430)
+++.||+||++..+..+. .......+++|+|++++ +++|+|++ +++++.| +.|||+++|++++.||
T Consensus 351 l~~~YG~TE~~~~~~~~~----------~~~~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~~~gY 416 (549)
T PRK07788 351 LYNLYGSTEVAFATIATP----------EDLAEAPGTVGRPPKGV-TVKILDEN-GNEVPRG--VVGRIFVGNGFPFEGY 416 (549)
T ss_pred ceeccCcchhchhhccCh----------hhhhhcCCCcccCCCCc-EEEEECCC-cCCCCCC--CeEEEEEeCCCccccc
Confidence 999999999875544321 11123457899999999 99999988 9999998 8999999999999999
Q ss_pred cCCccc
Q 048242 417 LKNPKA 422 (430)
Q Consensus 417 ~~~~~~ 422 (430)
+++++.
T Consensus 417 ~~~~~~ 422 (549)
T PRK07788 417 TDGRDK 422 (549)
T ss_pred cCCCcc
Confidence 998765
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-53 Score=400.23 Aligned_cols=366 Identities=20% Similarity=0.287 Sum_probs=300.3
Q ss_pred HHHHHHh-hCCCcceEEECC-----eeeeHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 25 FLERAAT-VHPTRKSVVYES-----KHYTWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 25 ~l~~~~~-~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
.++++.+ ..++++|+++.+ +.+||+||.+.++++|+.|++ .|+ +||+|+|++|+.+|.++++|||+++|++.
T Consensus 14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 4666655 346899999864 689999999999999999997 578 99999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|+.+.++++.+...++++++|++|+++......+.......... ....++.+.... ..|.+
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~----~~~~~iv~~r~~--------------~~~~~ 154 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADA----VLSSVVVVPRLG--------------LWYDE 154 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHH----hhcceEEecccc--------------ccHHH
Confidence 999999999999999999999999998876553332111000000 000133333221 56777
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHH-HHHhhcCCCCCCEEEeccCchhhhhhHH-HH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL-NVVLTWGMKEGAVYLWTLPIFHGNGWCF-TW 255 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~ 255 (430)
..+........ .+.+.+|+++|+|||||||+||||+++|..+..... .....+.+.++|++.+..+..|++|.+. .+
T Consensus 155 ~~~~~~~~~~~-~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~ 233 (528)
T COG0365 155 AVEKASEKFEF-EPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVF 233 (528)
T ss_pred HhhccCCCCCc-cccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHH
Confidence 77665554433 237899999999999999999999999997655544 4444677789999999999999999996 88
Q ss_pred HHHhhcceEEEeCC--C-CHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-
Q 048242 256 SLAALCGTSVMLRQ--A-SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS- 331 (430)
Q Consensus 256 ~~l~~g~~~v~~~~--~-~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~- 331 (430)
.++..|+++++++. + ++..+++.|+++++|.++++|+.++.|.+.....+.+ +++||.+.++||||+++.++++.
T Consensus 234 ~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~d-lssLr~~~SaGEPLnpe~~~w~~~ 312 (528)
T COG0365 234 SPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYD-LSSLRVLGSAGEPLNPEAFEWFYS 312 (528)
T ss_pred HHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCccccc-chhheeeeccCCCCCHHHHHHHHH
Confidence 89999999999953 3 4899999999999999999999999999887655566 99999999999999999999998
Q ss_pred hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC-
Q 048242 332 QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN- 410 (430)
Q Consensus 332 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~- 410 (430)
.+|+++.+.||+||++++...... ..+.++.|+|+||+ ++.|+|++ |++++.+ + |+|.++.+
T Consensus 313 ~~g~~i~d~~gqTEtg~~~~~~~~------------~~~~g~~g~p~pG~-~~~vvdd~-g~~~~~~--~-G~Lvi~~~~ 375 (528)
T COG0365 313 ALGVWILDIYGQTETGMGFIAGRP------------PVKNGSSGLPLPGY-AVRRVDDE-GNPVPPG--V-GELVVRLPW 375 (528)
T ss_pred HhCCCEeccccccccCccccCCCC------------CcCCCCCCCCCCCc-eeEEECCC-CCcCCCC--c-eEEEEeCCC
Confidence 669999999999999855554432 12335559999999 99999999 9999998 7 99999987
Q ss_pred -cccccccCCcccchHhhh
Q 048242 411 -MVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 411 -~v~~gY~~~~~~t~~~f~ 428 (430)
+++.|||+|++++.+.|-
T Consensus 376 p~~~~~~w~d~er~~~~y~ 394 (528)
T COG0365 376 PGMALTYWNDPERYKEAYF 394 (528)
T ss_pred chhhhhhhCCHHHHHHHHh
Confidence 999999999999988764
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=414.49 Aligned_cols=374 Identities=19% Similarity=0.200 Sum_probs=302.2
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECC-eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYES-KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTG 94 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 94 (430)
.....++.+.|.+.++++|+++|+.+.+ +++||+||.++++++|+.|.+ .+||+|+++++|++++++++|||+++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G 91 (539)
T PRK06334 15 LRSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSG 91 (539)
T ss_pred cCcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcC
Confidence 4455789999999999999999998765 799999999999999999987 389999999999999999999999999
Q ss_pred CeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccc
Q 048242 95 AVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTE 174 (430)
Q Consensus 95 ~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (430)
++++|++|.++.+++.++++.+++++++++.+....+.+....... ....++.+++... ...
T Consensus 92 ~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~------------~~~ 153 (539)
T PRK06334 92 KIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAE------YPFSLIYMEEVRK------------ELS 153 (539)
T ss_pred CeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhcccc------ccccEEEEehhhh------------hcc
Confidence 9999999999999999999999999999988765544432211000 0123333332110 000
Q ss_pred hhhhhh-----cCCCC----CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCc
Q 048242 175 YEKLLE-----TGDPE----FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI 245 (430)
Q Consensus 175 ~~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl 245 (430)
+.+... ..... ........++++++|+|||||||.||+|+++|+++..+.......++++.+|++++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~ 233 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPP 233 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecch
Confidence 001000 00000 000123467899999999999999999999999999888877778888999999999999
Q ss_pred hhhhhhHH-HHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCC
Q 048242 246 FHGNGWCF-TWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPP 323 (430)
Q Consensus 246 ~h~~gl~~-~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~ 323 (430)
+|.+|+.. .+.++..|+++++.. .+++..+++.|+++++|+++++|++++.+++.......+ +++||.+++||++++
T Consensus 234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~ 312 (539)
T PRK06334 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESC-LPSLRFVVIGGDAFK 312 (539)
T ss_pred HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccc-cccccEEEECCccCC
Confidence 99999874 677788899988875 579999999999999999999999999998876554455 899999999999999
Q ss_pred HHHHHHHH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCc
Q 048242 324 PPILLAMS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKT 401 (430)
Q Consensus 324 ~~~~~~~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~ 401 (430)
+++.++++ .+ ++.+++.||+||+++.++.+.... ....+++|+|++++ +++|+|++++++++.| +
T Consensus 313 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~~~~~~~~~g--~ 379 (539)
T PRK06334 313 DSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNS----------PKHESCVGMPIRGM-DVLIVSEETKVPVSSG--E 379 (539)
T ss_pred HHHHHHHHHHCCCCeEEecccccccCceEEeccCCC----------CCCCCcCceecCCC-EEEEEcCCCCccCCCC--c
Confidence 99999998 55 789999999999987665433211 11236799999999 9999998778999998 8
Q ss_pred eeEEEEecCcccccccCCcccch
Q 048242 402 IGEVVMRGNMVMKGYLKNPKANE 424 (430)
Q Consensus 402 ~Gel~v~g~~v~~gY~~~~~~t~ 424 (430)
.|||+|+|++++.|||++++.+.
T Consensus 380 ~Gel~v~g~~~~~GY~~~~~~~~ 402 (539)
T PRK06334 380 TGLVLTRGTSLFSGYLGEDFGQG 402 (539)
T ss_pred eEEEEEecCcccccccCCccccc
Confidence 99999999999999999998754
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=409.66 Aligned_cols=402 Identities=45% Similarity=0.789 Sum_probs=308.2
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
.+.++.++|++.++.+|+++|+++.+.++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 12 ~~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~ 91 (579)
T PLN03102 12 VPLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVL 91 (579)
T ss_pred ccccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|++|.++.+++.++++.++++++|++.+....+.++....+..... ....++.+++...... ......++.+
T Consensus 92 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 164 (579)
T PLN03102 92 NPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSN--LNLPVIFIHEIDFPKR-----PSSEELDYEC 164 (579)
T ss_pred eeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccc--cCceEEEecccccccC-----CcccccCHHH
Confidence 99999999999999999999999999887766655544332210000 1123444443211000 0012234555
Q ss_pred hhhcCCCCCCC----CCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH
Q 048242 178 LLETGDPEFAW----KPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF 253 (430)
Q Consensus 178 ~~~~~~~~~~~----~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~ 253 (430)
++......... .....++++++|+|||||||.||+|+++|.++..........+.+...+++++.+|++|..++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 244 (579)
T PLN03102 165 LIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTF 244 (579)
T ss_pred HHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhH
Confidence 54433221111 11235689999999999999999999999997655544445556777889999999999999988
Q ss_pred HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhc
Q 048242 254 TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQK 333 (430)
Q Consensus 254 ~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~ 333 (430)
.+.++..|+++++...+++..+++.|+++++|+++++|+++..+.+........ .++++.+++||+++++.+.++++++
T Consensus 245 ~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~~~~~~ 323 (579)
T PLN03102 245 TWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSP-RSGPVHVLTGGSPPPAALVKKVQRL 323 (579)
T ss_pred HHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCC-cccceEEEECCCCCCHHHHHHHHHc
Confidence 788888999999998889999999999999999999999999999875443333 5678889999999999999999888
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhh---hhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQ---ARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
|+++++.||+||+++.++.+.....|...+.... ....+..+.+++ .+++.|.+++++++.++++.|||+++|+
T Consensus 324 g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~v~i~~~~~~~~v~~~~~~~GEl~v~g~ 400 (579)
T PLN03102 324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA---DVDVKNKETQESVPRDGKTMGEIVIKGS 400 (579)
T ss_pred CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc---ceEEeccccccccCCCCCCceEEEEECc
Confidence 9999999999999866554332222211111100 011233333443 5677777667888764336899999999
Q ss_pred cccccccCCcccchHhhhCC
Q 048242 411 MVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 411 ~v~~gY~~~~~~t~~~f~dg 430 (430)
+++.|||++++.+.+.|.+|
T Consensus 401 ~~~~GY~~~~~~t~~~f~~g 420 (579)
T PLN03102 401 SIMKGYLKNPKATSEAFKHG 420 (579)
T ss_pred chhhhhcCChhhhHhhhccC
Confidence 99999999999999998765
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-53 Score=407.78 Aligned_cols=370 Identities=24% Similarity=0.373 Sum_probs=291.9
Q ss_pred HHHHHhhCCCcceEEE-CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccC
Q 048242 26 LERAATVHPTRKSVVY-ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL 104 (430)
Q Consensus 26 l~~~~~~~p~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~ 104 (430)
|+++++++|+++|+++ .++++||+||+++++++|..|.+.|+++|++|+++++|+++++++++||+++|++++|++|.+
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 6889999999999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhhcCceEEEec--cccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcC
Q 048242 105 NPLNVAIILGHAEAALVFVD--QQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETG 182 (430)
Q Consensus 105 ~~~~l~~~l~~~~~~~vi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (430)
+.+++.++++.++++++|+. .+... +..+....... .....++.++....... ......+....
T Consensus 81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~- 146 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFKQE----DPSSSIIILDRDDLPKK--------EALKSASLSDE- 146 (417)
T ss_dssp SHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHTTS----TTTEEEEEESHSSCTTC--------HHHHHHHHCHC-
T ss_pred ccccccccccccceeEEEEeccccccc-cccchhhhccc----ccccccccccccccccc--------ccccccccccc-
Confidence 99999999999999999971 01111 22222222100 02334555553321100 00000000000
Q ss_pred CCCCCCCCC-CCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH--hhcCCCCCCEEEeccCchhhhhh-HHHHHHH
Q 048242 183 DPEFAWKPP-RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV--LTWGMKEGAVYLWTLPIFHGNGW-CFTWSLA 258 (430)
Q Consensus 183 ~~~~~~~~~-~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~pl~h~~gl-~~~~~~l 258 (430)
.. .+ ..++++++++|||||||.||+|.++|+++.+.+..+. ..++++ |++++.+|++|.+|+ ..++.++
T Consensus 147 -~~----~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l 219 (417)
T PF00501_consen 147 -PQ----SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAAL 219 (417)
T ss_dssp -SH----STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHH
T ss_pred -cc----cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccc
Confidence 00 00 0568999999999999999999999999988877754 223333 699999999999999 6789999
Q ss_pred hhcceEEEeCCCC---HHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC----CCCCCCceeEEeecCCCCCHHHHHHHH
Q 048242 259 ALCGTSVMLRQAS---AKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED----TILPLPHVVNVNTGGSPPPPPILLAMS 331 (430)
Q Consensus 259 ~~g~~~v~~~~~~---~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~----~~~~l~~lr~v~~~G~~l~~~~~~~~~ 331 (430)
..|+++++++... +..+++.++++++|+++++|.+++.+++..... ..+ +++||.++++|+++++++.++++
T Consensus 220 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~-l~~lr~v~~~G~~l~~~~~~~~~ 298 (417)
T PF00501_consen 220 FSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKD-LSSLRTVISGGEPLPPDLLRRLR 298 (417)
T ss_dssp HCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTT-GTT-SEEEEESST-CHHHHHHHH
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccc-cccccccccccccCChhhccccc
Confidence 9999999998654 467899999999999999999999999843221 234 88999999999999999999999
Q ss_pred -hcCc-EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 332 -QKGF-RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 332 -~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
.++. ++++.||+||++++++.... .....+.+++|+|++++ +++|+|++++++++.| +.|||+|+|
T Consensus 299 ~~~~~~~i~~~YG~tE~~~~~~~~~~---------~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~g--~~Gei~i~~ 366 (417)
T PF00501_consen 299 KAFGNAPIINLYGSTETGSIATIRPP---------EDDIEKPGSVGKPLPGV-EVKIVDPNTGEPLPPG--EPGEIVIRG 366 (417)
T ss_dssp HHHTTSEEEEEEEEGGGSSEEEEEET---------TTHHSSTTSEBEESTTE-EEEEECTTTSSBESTT--SEEEEEEES
T ss_pred cccccccceecccccccceeeecccc---------ccccccccccccccccc-cccccccccccccccc--ccccccccC
Confidence 4566 99999999999888865421 11223457899999999 9999999999999998 899999999
Q ss_pred CcccccccCCcccchHhhhC
Q 048242 410 NMVMKGYLKNPKANEEAFAN 429 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f~d 429 (430)
++++.||++++++++++|.+
T Consensus 367 ~~~~~gy~~~~~~~~~~~~~ 386 (417)
T PF00501_consen 367 PNVFSGYYNDPELTAEAFID 386 (417)
T ss_dssp TTSBSEETTBHHHHHHHEET
T ss_pred Cccceeeecccccccccccc
Confidence 99999999999999999854
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-52 Score=414.21 Aligned_cols=393 Identities=20% Similarity=0.242 Sum_probs=305.1
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
+..+.++.++|++.++.+|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Ga 82 (563)
T PLN02860 3 NHSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGG 82 (563)
T ss_pred chhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccE
Confidence 44567899999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++|.++.+++.++++.+++++++++.+........... . ......++.+++...... .........
T Consensus 83 v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~-----~~~~~~~i~~~~~~~~~~----~~~~~~~~~ 152 (563)
T PLN02860 83 IVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQND-R-----LPSLMWQVFLESPSSSVF----IFLNSFLTT 152 (563)
T ss_pred EEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhc-c-----CCceeEEEEecCcccccc----cchhhcccc
Confidence 999999999999999999999999999987653322222110 0 012223333332110000 000001111
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
+++...............++++++|+|||||||.||+|+++|+++..+.......+++..+|+++...|++|.+++...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 232 (563)
T PLN02860 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSAL 232 (563)
T ss_pred chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHH
Confidence 11111111111111234578999999999999999999999999988777766778889999999999999999998888
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC--CCCCCCceeEEeecCCCCCHHHHHHHH-h
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED--TILPLPHVVNVNTGGSPPPPPILLAMS-Q 332 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~--~~~~l~~lr~v~~~G~~l~~~~~~~~~-~ 332 (430)
.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+..... ... +++||.+++||+++++++.++++ .
T Consensus 233 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~ 311 (563)
T PLN02860 233 AMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKV-FPSVRKILNGGGSLSSRLLPDAKKL 311 (563)
T ss_pred HHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhcccc-ccceeEEEeCCCcCCHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999998764322 233 78999999999999999999998 4
Q ss_pred c-CcEEEeeecCccccccccccccCCC-CCCC-----------ChhhhhhhccccCCccccccceEEeeCCCCCCCCCCC
Q 048242 333 K-GFRVTHVYGLSEINGPATVCAWNPN-WDSL-----------PFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADG 399 (430)
Q Consensus 333 ~-~~~v~~~YG~tE~~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~ 399 (430)
+ ++++++.||+||+++.++.....+. .... ..........++|+|++++ +++|+|++ .+
T Consensus 312 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~~~~------~g- 383 (563)
T PLN02860 312 FPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV-ELKIGLDE------SS- 383 (563)
T ss_pred cCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCc-EEEEecCC------CC-
Confidence 5 7899999999999765554332210 0000 0000011234789999999 99999875 34
Q ss_pred CceeEEEEecCcccccccCCcccchHhhh
Q 048242 400 KTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 400 ~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
+.|||+++|++++.|||++++.|.+.|.
T Consensus 384 -~~Gel~v~g~~~~~GY~~~~~~t~~~~~ 411 (563)
T PLN02860 384 -RVGRILTRGPHVMLGYWGQNSETASVLS 411 (563)
T ss_pred -ceeEEEEecCcccccccCCccccchhcc
Confidence 7899999999999999999999988873
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=420.39 Aligned_cols=392 Identities=21% Similarity=0.276 Sum_probs=301.0
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEEC----C-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHH
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYE----S-----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
...|+.++|.+.++.+|+++|+.+. + .++||+|+.++++++|+.|.+.|+++||+|+|+++|++||++++|
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4668999999999999999999742 1 357999999999999999999999999999999999999999999
Q ss_pred HhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHH-HHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccc
Q 048242 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA-LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA 167 (430)
Q Consensus 89 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (430)
||+++|++++|+++.++++++.++++.++++++|++..... .+.......+ ....++.+++...........
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~ 192 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAK-------RLKAIVSFTSVTEEESDKASQ 192 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCC-------CceEEEEECCCChHHhhhhhc
Confidence 99999999999999999999999999999999999875332 2211111111 345566665422100000000
Q ss_pred ccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh---c--CCCCCCEEEec
Q 048242 168 LSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT---W--GMKEGAVYLWT 242 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~---~--~~~~~~~~~~~ 242 (430)
......+|++++..+........+..++++++|+|||||||.||||++||+|+...+...... + +++.+|++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~ 272 (660)
T PLN02430 193 IGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSF 272 (660)
T ss_pred CCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEe
Confidence 011235677766544322222233467899999999999999999999999998877655332 2 46789999999
Q ss_pred cCchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCC--------------------
Q 048242 243 LPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP-------------------- 302 (430)
Q Consensus 243 ~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~-------------------- 302 (430)
+|++|.+++...+.++..|+++++... ++..+++.|.++++|++.++|.+|+.+.+...
T Consensus 273 lPl~H~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 351 (660)
T PLN02430 273 LPLAHILDRMIEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKY 351 (660)
T ss_pred CcHHHHHHHHHHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999998877777788988877754 78889999999999999999999988864210
Q ss_pred -----------C--CC-CC----------CCCceeEEeecCCCCCHHHHHHHHhcC-cEEEeeecCccccccccccccCC
Q 048242 303 -----------E--DT-IL----------PLPHVVNVNTGGSPPPPPILLAMSQKG-FRVTHVYGLSEINGPATVCAWNP 357 (430)
Q Consensus 303 -----------~--~~-~~----------~l~~lr~v~~~G~~l~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~ 357 (430)
. .. .+ ..++||.+++||+++++++.+.++.++ +.++++||+||+++.++.+...+
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~ 431 (660)
T PLN02430 352 KLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDE 431 (660)
T ss_pred HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeecccc
Confidence 0 00 00 016899999999999999988777775 68999999999987666543221
Q ss_pred CCCCCChhhhhhhccccCCccccccceEEeeC-CCC-CCCCCCCCceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 358 NWDSLPFEAQARLNARQGVKCMCLEGLDVLDT-KTN-QPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 358 ~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~-~~~-~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
....+++|+|.+++ ++++.|. +.+ .+++.+ ..|||+|+|++++.|||++|++|.+.|.||
T Consensus 432 ----------~~~~gsvG~p~~~~-evki~d~~~~g~~~~~~~--~~GEi~vrg~~v~~GY~~~~e~t~~~~~dG 493 (660)
T PLN02430 432 ----------MCMLGTVGAPAVYN-ELRLEEVPEMGYDPLGEP--PRGEICVRGKCLFSGYYKNPELTEEVMKDG 493 (660)
T ss_pred ----------CCCCCCccCCCCce-EEEEEEcCCcCcccCCCC--CcceEEecCCCccccccCChHHhhhhhhcc
Confidence 12358999999999 9999873 322 344444 579999999999999999999999998765
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=405.92 Aligned_cols=378 Identities=23% Similarity=0.303 Sum_probs=312.1
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEECC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHH
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
-.|+..++.++|++.++.+|+++|+++.+ +.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|
T Consensus 19 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~l 98 (547)
T PRK13295 19 GHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYL 98 (547)
T ss_pred CCCcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHH
Confidence 45667789999999999999999999865 899999999999999999999999999999999999999999999
Q ss_pred HhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCc
Q 048242 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP 163 (430)
Q Consensus 89 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (430)
||+++|++++|++|.++.+++.++++.++++++++++.+. ..+.+...... ....++.++...
T Consensus 99 a~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----- 166 (547)
T PRK13295 99 ACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELP-------ALRHVVVVGGDG----- 166 (547)
T ss_pred HHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCC-------CcceEEEecCCC-----
Confidence 9999999999999999999999999999999999987541 22222212111 334455444321
Q ss_pred ccccccCCccchhhhhhcC-------CCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCC
Q 048242 164 LEYALSKGVTEYEKLLETG-------DPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEG 236 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~ 236 (430)
...+.+++... .+.........++++++++|||||||.||+|+++|.++...+......+++..+
T Consensus 167 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 238 (547)
T PRK13295 167 --------ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGAD 238 (547)
T ss_pred --------ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCC
Confidence 12233332211 001111123456899999999999999999999999999888887788889999
Q ss_pred CEEEeccCchhhhhhH-HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEE
Q 048242 237 AVYLWTLPIFHGNGWC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNV 315 (430)
Q Consensus 237 ~~~~~~~pl~h~~gl~-~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v 315 (430)
+++++..|++|.+++. .++.++..|+++++.+.+++..+++.++++++|++..+|.++..+.........+ +++||.+
T Consensus 239 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~ 317 (547)
T PRK13295 239 DVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRP-VSSLRTF 317 (547)
T ss_pred CeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCC-cccceEE
Confidence 9999999999999876 4777888999999998889999999999999999999999999999876555555 8999999
Q ss_pred eecCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCC
Q 048242 316 NTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQP 394 (430)
Q Consensus 316 ~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~ 394 (430)
++||+++++++.++++ .+++++++.||+||++..+..+.... ......++|+|++++ +++|+|++ +++
T Consensus 318 ~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~v~i~d~~-~~~ 386 (547)
T PRK13295 318 LCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDP---------DERASTTDGCPLPGV-EVRVVDAD-GAP 386 (547)
T ss_pred EEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCc---------chhccCccccccCCc-EEEEECCC-CCC
Confidence 9999999999999998 57999999999999976554432111 112346789999999 99999987 899
Q ss_pred CCCCCCceeEEEEecCcccccccCCcccchHh
Q 048242 395 IPADGKTIGEVVMRGNMVMKGYLKNPKANEEA 426 (430)
Q Consensus 395 ~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~ 426 (430)
++.| +.|||+|+|++++.||+++++.|.+.
T Consensus 387 ~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~ 416 (547)
T PRK13295 387 LPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD 416 (547)
T ss_pred CCCC--CCCeEEEEcCcccccccCCccccccC
Confidence 9988 89999999999999999999988654
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=420.26 Aligned_cols=385 Identities=18% Similarity=0.219 Sum_probs=295.1
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEEC---------------------------CeeeeHHHHHHHHHHHHHHHHHcCCCCC
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYE---------------------------SKHYTWQQTYQRCRRLASALSQLSIGPG 70 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~---------------------------~~~~Ty~el~~~~~~la~~L~~~gv~~g 70 (430)
...|+.++|.+.++.+|+++|+.+. .+++||+||.++++++|+.|.++|+++|
T Consensus 67 ~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~g 146 (700)
T PTZ00216 67 YGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKG 146 (700)
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3568999999999999999999973 4789999999999999999999999999
Q ss_pred CeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCe
Q 048242 71 TAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPV 150 (430)
Q Consensus 71 ~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (430)
|+|+|+++|++||+++++||+++|++++|+++.++++++.++++.++++++|++.+....+........ . ....
T Consensus 147 d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~-----~-~~~~ 220 (700)
T PTZ00216 147 SNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGG-----M-PNTT 220 (700)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhcc-----C-CceE
Confidence 999999999999999999999999999999999999999999999999999998765544333222111 0 1234
Q ss_pred EEEecCCCCCCCcccccccCCccchhhhhhcCC--C-CCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHH
Q 048242 151 LIVIGDETCDRAPLEYALSKGVTEYEKLLETGD--P-EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNV 227 (430)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~ 227 (430)
++.+++..... ........+|.+++..+. . ......+..++++++|+|||||||.||||++||+|+.+.+.+.
T Consensus 221 ii~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~ 296 (700)
T PTZ00216 221 IIYLDSLPASV----DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILAL 296 (700)
T ss_pred EEEECCCcccc----ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHH
Confidence 55554421110 001123456777765542 1 1111233468999999999999999999999999999887776
Q ss_pred Hhhc-----CCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHH-------HHHhhCceEEeeccHHHH
Q 048242 228 VLTW-----GMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYK-------AIAEHGVTNFCAAPIVLN 295 (430)
Q Consensus 228 ~~~~-----~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~-------~l~~~~vt~~~~~p~~l~ 295 (430)
...+ ....+|++++.+|++|.+++......+..|+++++. ++..+.+ .++++++|++.++|.+|+
T Consensus 297 ~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~ 373 (700)
T PTZ00216 297 EDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFD 373 (700)
T ss_pred HhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHH
Confidence 5543 236789999999999999987666666666655442 4555544 688999999999999999
Q ss_pred HHHcCCCC-------------------------CCC---------------CCCCceeEEeecCCCCCHHHHHHHHh-cC
Q 048242 296 SIVNAPPE-------------------------DTI---------------LPLPHVVNVNTGGSPPPPPILLAMSQ-KG 334 (430)
Q Consensus 296 ~l~~~~~~-------------------------~~~---------------~~l~~lr~v~~~G~~l~~~~~~~~~~-~~ 334 (430)
.+.+.... ... ...++||.+++||+++++++.++++. ++
T Consensus 374 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~ 453 (700)
T PTZ00216 374 TIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG 453 (700)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh
Confidence 87642100 000 00168999999999999999988874 47
Q ss_pred cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCC-CCCCCCCceeEEEEecCccc
Q 048242 335 FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQ-PIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 335 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~-~~~~~~~~~Gel~v~g~~v~ 413 (430)
+++++||+||+++.++..... ....+++|+|++++ +++|+|.+... ..+.+ +.|||+|+|++++
T Consensus 454 -~l~~~YG~TEt~~~~~~~~~~-----------~~~~~svG~p~~g~-evkI~d~~~~~~~~~~~--~~GEL~vrG~~v~ 518 (700)
T PTZ00216 454 -MVIQGWGLTETVCCGGIQRTG-----------DLEPNAVGQLLKGV-EMKLLDTEEYKHTDTPE--PRGEILLRGPFLF 518 (700)
T ss_pred -hHhhccCcccccccccccCCC-----------CCCCCCcCCcCCCe-EEEEeechhhccCCCCC--CCceEEEcCCccc
Confidence 999999999997665543321 12348999999999 99999986322 22333 5799999999999
Q ss_pred ccccCCcccchHhh-hCC
Q 048242 414 KGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 414 ~gY~~~~~~t~~~f-~dg 430 (430)
.|||++|++|+++| .||
T Consensus 519 ~GY~~~pe~T~~~f~~dG 536 (700)
T PTZ00216 519 KGYYKQEELTREVLDEDG 536 (700)
T ss_pred chhcCChhHhhhhccccC
Confidence 99999999999999 454
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=401.21 Aligned_cols=385 Identities=25% Similarity=0.370 Sum_probs=325.3
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
+...++.+.|++.++.+|+++|+++.++++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 2 ~~~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~ 81 (513)
T PRK07656 2 NEWMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAV 81 (513)
T ss_pred CccccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|..+.+++.++++.+++++++++............... ....++......... .......|.
T Consensus 82 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (513)
T PRK07656 82 VVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP-------ALEHVVICETEEDDP------HTEKMKTFT 148 (513)
T ss_pred EEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccC-------CccEEEEEcCccccc------CccccccHH
Confidence 9999999999999999999999999999876665544433222 334444443322110 011234566
Q ss_pred hhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HH
Q 048242 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TW 255 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~ 255 (430)
++....... .......++++++++|||||||.||+|.++|.++...+......+++..++++++.+|++|.+++.. ++
T Consensus 149 ~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (513)
T PRK07656 149 DFLAAGDPA-ERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVN 227 (513)
T ss_pred HHHhcCCCC-CCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHH
Confidence 665443321 1223467789999999999999999999999999988888888889999999999999999999875 67
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcC
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKG 334 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~ 334 (430)
.++..|+++++.+.+++..+++.|+++++|+++++|.+++.+.......... ++++|.+++||+++++++.++++ .++
T Consensus 228 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~ 306 (513)
T PRK07656 228 APLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAED-LSSLRLAVTGAASMPVALLERFESELG 306 (513)
T ss_pred HHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCC-ccceeeEEecCCCCCHHHHHHHHHHcC
Confidence 7788899998888889999999999999999999999999999987666555 89999999999999999999998 678
Q ss_pred c-EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 335 F-RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 335 ~-~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
. .+++.||+||++++++.+...... ....+++|+|++++ +++|+|++ +++++.| +.|||+++|++++
T Consensus 307 ~~~~~~~YG~tE~~~~~~~~~~~~~~--------~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~ 374 (513)
T PRK07656 307 VDIVLTGYGLSEASGVTTFNRLDDDR--------KTVAGTIGTAIAGV-ENKIVNEL-GEEVPVG--EVGELLVRGPNVM 374 (513)
T ss_pred CCceEeEEccccCCCceeecCccccc--------cccCCCccccCCCc-EEEEECCC-CCCCCCC--CceEEEEEcchhh
Confidence 8 899999999998887766543211 01247899999999 99999987 9999988 8999999999999
Q ss_pred ccccCCcccchHhhh
Q 048242 414 KGYLKNPKANEEAFA 428 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~ 428 (430)
.||+++++.+...|.
T Consensus 375 ~gy~~~~~~~~~~~~ 389 (513)
T PRK07656 375 KGYYDDPEATAAAID 389 (513)
T ss_pred hhhcCCHHHHhhhhc
Confidence 999999999888774
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=404.63 Aligned_cols=389 Identities=22% Similarity=0.292 Sum_probs=320.9
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEcCCchhHHHHHHHhhhc
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQL-SIGPGTAVSVLSPNVPAMYEVHFGVPMT 93 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 93 (430)
...+..++.++|.+.++.+|+++|+++.++++||+||.+++.++|+.|.+. |+++|++|+++++|++++++++|||+++
T Consensus 5 ~~~~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 84 (546)
T PRK08314 5 LTLPETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRA 84 (546)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 446677899999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCC--CCC---------
Q 048242 94 GAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETC--DRA--------- 162 (430)
Q Consensus 94 G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~--------- 162 (430)
|++++|++|..+.+++.++++.+++++++++.+....+....... ....++....... ...
T Consensus 85 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (546)
T PRK08314 85 NAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--------RLRHVIVAQYSDYLPAEPEIAVPAWLR 156 (546)
T ss_pred CcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--------CcceEEEecchhhcccccccCcccccc
Confidence 999999999999999999999999999999987666554432211 1122222210000 000
Q ss_pred ---cccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEE
Q 048242 163 ---PLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVY 239 (430)
Q Consensus 163 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~ 239 (430)
........++..|++.+..... .......++++++|+|||||||.||+|.++|.++..++......+.+..+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~ 234 (546)
T PRK08314 157 AEPPLQALAPGGVVAWKEALAAGLA--PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVV 234 (546)
T ss_pred cccccccccccccccHHHHhcccCC--CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceE
Confidence 0000111234456665543221 12234567899999999999999999999999999988888888889999999
Q ss_pred EeccCchhhhhhH-HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeec
Q 048242 240 LWTLPIFHGNGWC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318 (430)
Q Consensus 240 ~~~~pl~h~~gl~-~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~ 318 (430)
++.+|++|.+|+. .++.++..|+++++.+.+++..+++.++++++|++.++|.++..++........+ ++++|.++.|
T Consensus 235 l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~-~~~l~~~~~g 313 (546)
T PRK08314 235 LAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERD-LSSLRYIGGG 313 (546)
T ss_pred EEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccC-chhhheeeec
Confidence 9999999999986 4667888999999999899999999999999999999999999998776555555 8899999999
Q ss_pred CCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCC
Q 048242 319 GSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPA 397 (430)
Q Consensus 319 G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~ 397 (430)
|+++++++.+++. .++.++++.||+||++..+...... ....+++|+|++++ +++|+|+++++.++.
T Consensus 314 G~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~~~i~d~~~~~~~~~ 381 (546)
T PRK08314 314 GAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPD-----------RPKLQCLGIPTFGV-DARVIDPETLEELPP 381 (546)
T ss_pred cccCCHHHHHHHHHHcCCcEEecccccccccceecCCCc-----------CCCCCccCcccCCe-EEEEEeCCCCcCCCC
Confidence 9999999999998 6799999999999997665543211 11347899999999 999999877999998
Q ss_pred CCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 398 DGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 398 ~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
+ +.|||+++|++++.||+++++.|.+.|.
T Consensus 382 g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~ 410 (546)
T PRK08314 382 G--EVGEIVVHGPQVFKGYWNRPEATAEAFI 410 (546)
T ss_pred C--CceEEEEECCchhccccCChhHhhhhhh
Confidence 8 8899999999999999999999988773
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=407.83 Aligned_cols=388 Identities=21% Similarity=0.284 Sum_probs=306.8
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEEC--------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHH
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYE--------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEV 86 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~--------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~ 86 (430)
.+..+.++.++|++.++.+|+++|+++. .+++||+||.+++.++|+.|.+.|+++||+|+++++|+++++++
T Consensus 20 ~~~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~ 99 (632)
T PRK07529 20 ARDLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFA 99 (632)
T ss_pred hhcCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 3455678999999999999999999862 47999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecccc-----HHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCC
Q 048242 87 HFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY-----FALAEEALKIMEGKSEGLFKPPVLIVIGDETCDR 161 (430)
Q Consensus 87 ~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 161 (430)
+|||+++| +++|++|.++++++.++++.++++++|++... ...+.......+ ....++.++......
T Consensus 100 ~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~ 171 (632)
T PRK07529 100 LWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALP-------ELRTVVEVDLARYLP 171 (632)
T ss_pred HHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCC-------cceeEEEecCccccc
Confidence 99999999 57999999999999999999999999998643 233333332222 445555554321000
Q ss_pred Cccc-------ccccCCccchhhhhhcCCCCCC-CCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCC
Q 048242 162 APLE-------YALSKGVTEYEKLLETGDPEFA-WKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGM 233 (430)
Q Consensus 162 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~ 233 (430)
.... .....+...|.+.+........ ......++++++++|||||||.||+|+++|.++..++......+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~ 251 (632)
T PRK07529 172 GPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL 251 (632)
T ss_pred ccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCC
Confidence 0000 0012234556665554432211 1123467999999999999999999999999998888777777888
Q ss_pred CCCCEEEeccCchhhhhhH-HHHHHHhhcceEEEeCC--C----CHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCC
Q 048242 234 KEGAVYLWTLPIFHGNGWC-FTWSLAALCGTSVMLRQ--A----SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTI 306 (430)
Q Consensus 234 ~~~~~~~~~~pl~h~~gl~-~~~~~l~~g~~~v~~~~--~----~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~ 306 (430)
..++++++.+|++|.+++. .++.++..|+++++.+. + ....+++.++++++|++.++|+++..+.+..... .
T Consensus 252 ~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-~ 330 (632)
T PRK07529 252 GPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDG-H 330 (632)
T ss_pred CCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccC-C
Confidence 9999999999999999987 46777888999988753 2 1367889999999999999999999999876432 3
Q ss_pred CCCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceE
Q 048242 307 LPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLD 385 (430)
Q Consensus 307 ~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~ 385 (430)
+ +++||.+++||+++++++.++++ .+++++++.||+||++..+..+.... ....+++|+|++++ +++
T Consensus 331 ~-~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~----------~~~~~svG~~~p~~-~v~ 398 (632)
T PRK07529 331 D-ISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDG----------ERRIGSVGLRLPYQ-RVR 398 (632)
T ss_pred C-ccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccc----------cccCCCcccccCCc-eEE
Confidence 4 89999999999999999999998 56999999999999987665443211 12458899999999 899
Q ss_pred Ee--eCCCC---CCCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 386 VL--DTKTN---QPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 386 v~--d~~~~---~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
|+ |++ + ++++.| +.|||+|+|++++.||++++. +.+.|
T Consensus 399 i~~~d~~-g~~~~~~~~g--~~Gel~v~gp~v~~GY~~~~~-~~~~~ 441 (632)
T PRK07529 399 VVILDDA-GRYLRDCAVD--EVGVLCIAGPNVFSGYLEAAH-NKGLW 441 (632)
T ss_pred EEEcCCC-CcccccCCCC--CceEEEEECCCccccccCCcc-ccccc
Confidence 85 554 6 788888 899999999999999998654 44444
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-51 Score=411.13 Aligned_cols=387 Identities=17% Similarity=0.186 Sum_probs=296.4
Q ss_pred CHHHHHHHHHhh--CCCcceEEEC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 21 TPLWFLERAATV--HPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 21 t~~~~l~~~~~~--~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
+..++++++++. +|+++|+++. .+++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 60 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~ 139 (647)
T PTZ00237 60 TCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCAR 139 (647)
T ss_pred HHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 346777777654 7899999873 36899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEecccc---------HHHHHHHHHHhhccCCCCCCCCeEEEecCCCC--CC
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY---------FALAEEALKIMEGKSEGLFKPPVLIVIGDETC--DR 161 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~ 161 (430)
+|++++|+++.++.+++.+++++++++++|+++.. ...+.++.. ... .....++.+..... ..
T Consensus 140 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~vi~~~~~~~~~~~ 213 (647)
T PTZ00237 140 IGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIE-LST-----FKPSNVITLFRNDITSES 213 (647)
T ss_pred hCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHh-ccc-----CCCCEEEEEEcCCccccc
Confidence 99999999999999999999999999999997531 222222222 110 01234444321110 00
Q ss_pred Cc--c-cccccCCccchhhhhhcCC----CCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHH-HHHHHHHHHhhcCC
Q 048242 162 AP--L-EYALSKGVTEYEKLLETGD----PEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRA-AYLMSLNVVLTWGM 233 (430)
Q Consensus 162 ~~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~-l~~~~~~~~~~~~~ 233 (430)
.. . ......+...|++++.... ..........++++++|+|||||||+||||+++|.+ +.............
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~ 293 (647)
T PTZ00237 214 DLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEK 293 (647)
T ss_pred ccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCC
Confidence 00 0 0000112345666554211 111112345678999999999999999999999998 54443333445567
Q ss_pred CCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCC--CC----HHHHHHHHHhhCceEEeeccHHHHHHHcCCCC----
Q 048242 234 KEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQ--AS----AKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE---- 303 (430)
Q Consensus 234 ~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~--~~----~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~---- 303 (430)
..++++++..|++|+.+...++.+++.|+++++++. +. +..+++.++++++|+++++|++++.+.+....
T Consensus 294 ~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~ 373 (647)
T PTZ00237 294 DIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATII 373 (647)
T ss_pred CCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccccc
Confidence 778999999999998776678888999999998864 12 67899999999999999999999999875321
Q ss_pred -CCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccc
Q 048242 304 -DTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCL 381 (430)
Q Consensus 304 -~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 381 (430)
...+ +++||.++++|+++++++.++++ .+|+++++.||+||+++.++..... .....+++|+|++++
T Consensus 374 ~~~~~-l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~----------~~~~~~s~G~p~~g~ 442 (647)
T PTZ00237 374 RSKYD-LSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGH----------INIPYNATGVPSIFI 442 (647)
T ss_pred ccccC-cchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCC----------CCCCCCCCccCcCCc
Confidence 2335 89999999999999999999998 5699999999999998655432211 011237899999999
Q ss_pred cceEEeeCCCCCCCCCCCCceeEEEEecC---cccccccCCcccchHhhh
Q 048242 382 EGLDVLDTKTNQPIPADGKTIGEVVMRGN---MVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 382 ~~~~v~d~~~~~~~~~~~~~~Gel~v~g~---~v~~gY~~~~~~t~~~f~ 428 (430)
+++|+|++ |++++.| +.|||++++| +++.|||+|++.+.+.|.
T Consensus 443 -~~~i~d~~-g~~~~~g--e~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~ 488 (647)
T PTZ00237 443 -KPSILSED-GKELNVN--EIGEVAFKLPMPPSFATTFYKNDEKFKQLFS 488 (647)
T ss_pred -eEEEECCC-CCCCCCC--CceEEEEeccCCchhhCceeCCHHHHHHHHh
Confidence 99999986 9999988 8999999986 889999999999988874
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=398.23 Aligned_cols=359 Identities=24% Similarity=0.334 Sum_probs=304.8
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
.++.++|++.++++|+++|+++.++.+||.||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL 81 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhh
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL 179 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
+++..+.+++..+++.++++.++++............ ..+.++.
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~------------------------------------~~~~~~~ 125 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS------------------------------------VKFAELM 125 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc------------------------------------ccHHHHh
Confidence 9999999999999999999999998764433221100 0122222
Q ss_pred hcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHh
Q 048242 180 ETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~ 259 (430)
..............++++++++|||||||.||+|.++|.++...+......++++.+|++++.+|++|.+++..++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~ 205 (483)
T PRK03640 126 NGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVI 205 (483)
T ss_pred hcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHh
Confidence 11111111222346789999999999999999999999999888777777788999999999999999999998888899
Q ss_pred hcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEe
Q 048242 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTH 339 (430)
Q Consensus 260 ~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~ 339 (430)
.|+++++.+.+++..+++.++++++|++.++|++++.+....... .. ..+||.++++|+++++.+.+.++++++++++
T Consensus 206 ~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~-~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~ 283 (483)
T PRK03640 206 YGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TY-PSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQ 283 (483)
T ss_pred cCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-cc-CCcceEEEEcCCCCCHHHHHHHHHhCCCeee
Confidence 999999999999999999999999999999999999998765433 22 5799999999999999999999888999999
Q ss_pred eecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCC
Q 048242 340 VYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKN 419 (430)
Q Consensus 340 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~ 419 (430)
.||+||++..+...... ......+++|+|++++ +++|.|+ +++++.+ +.|||+++|++++.||+++
T Consensus 284 ~YG~tE~~~~~~~~~~~---------~~~~~~~~vG~p~~~~-~~~i~~~--~~~~~~g--~~Gel~v~g~~~~~gy~~~ 349 (483)
T PRK03640 284 SYGMTETASQIVTLSPE---------DALTKLGSAGKPLFPC-ELKIEKD--GVVVPPF--EEGEIVVKGPNVTKGYLNR 349 (483)
T ss_pred eeccCcccccccccCcc---------cccccCCCcccccCCc-EEEEecC--CCcCCCC--CceEEEEECcchhhhhcCC
Confidence 99999987544332211 1123458899999999 8999885 5788888 8999999999999999999
Q ss_pred cccchHhhhCC
Q 048242 420 PKANEEAFANG 430 (430)
Q Consensus 420 ~~~t~~~f~dg 430 (430)
++.+...|.+|
T Consensus 350 ~~~~~~~~~~~ 360 (483)
T PRK03640 350 EDATRETFQDG 360 (483)
T ss_pred HHHHHHHHhcC
Confidence 99998887653
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=406.01 Aligned_cols=385 Identities=16% Similarity=0.184 Sum_probs=301.2
Q ss_pred HHHHHHHHHhhCCCcceEEEC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 22 PLWFLERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 22 ~~~~l~~~~~~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
..++|+++++.+|+++|+++. ++++||+||.+++.++|+.|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 54 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Ga 133 (628)
T TIGR02316 54 CHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGA 133 (628)
T ss_pred HHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 357888888889999999972 37899999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccH---------HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccc
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYF---------ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEY 166 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (430)
+++|+++.++.+++.++++.++++++|+++... ..+.++..... .....++.++.......
T Consensus 134 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~~~~~~~~~~---- 203 (628)
T TIGR02316 134 IHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQ------HPPPHVLLVDRGLAPMR---- 203 (628)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcC------CCCCEEEEEeCCCCCcC----
Confidence 999999999999999999999999999976431 22222222111 02345666653211000
Q ss_pred cccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHH-HHHHHHhhcCCCCCCEEEeccCc
Q 048242 167 ALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYL-MSLNVVLTWGMKEGAVYLWTLPI 245 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~pl 245 (430)
........|.++...............++++++|+|||||||.||||+++|.++.. ........++++.+|++++..|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 283 (628)
T TIGR02316 204 LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDV 283 (628)
T ss_pred cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 00112234555544322111111224678999999999999999999999999753 34455566788999999999999
Q ss_pred hhhhhhH-HHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeec
Q 048242 246 FHGNGWC-FTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTG 318 (430)
Q Consensus 246 ~h~~gl~-~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~ 318 (430)
.|+.++. .++.+++.|+++++.+. +++..+++.|+++++|+++++|++++.+.+.... ...+ +++||.+++|
T Consensus 284 ~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~g 362 (628)
T TIGR02316 284 GWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHD-LSSLHWLFLA 362 (628)
T ss_pred CeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCC-ccceeEEEEe
Confidence 9999865 57788899999999863 5789999999999999999999999998876432 2344 8999999999
Q ss_pred CCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCC
Q 048242 319 GSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPA 397 (430)
Q Consensus 319 G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~ 397 (430)
|+++++++.++++ .++..+++.||+||++..++....... ....+.+++|+|++++ +++|+|+++|++++.
T Consensus 363 Ge~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~-------~~~~~~gs~G~p~~g~-~v~i~d~~~g~~~~~ 434 (628)
T TIGR02316 363 GEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLD-------LKPVKLGSPGLPMYGY-HLRVLDEATGRPCGP 434 (628)
T ss_pred cCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCC-------cCCCCCCCcccCcCCc-eEEEEECCCCCCCCC
Confidence 9999999999998 569999999999999754433221100 0112457899999999 999999966999998
Q ss_pred CCCceeEEEEecC---cccccccCCcccchHhh
Q 048242 398 DGKTIGEVVMRGN---MVMKGYLKNPKANEEAF 427 (430)
Q Consensus 398 ~~~~~Gel~v~g~---~v~~gY~~~~~~t~~~f 427 (430)
+ +.|||+++|| +++.|||++++.+.+.|
T Consensus 435 g--~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~ 465 (628)
T TIGR02316 435 N--EKGVLTVVPPLPPGCLSTVWGDDARFLKTY 465 (628)
T ss_pred C--CcEEEEEecCCCccccccccCChHHHHHhh
Confidence 8 8999999998 67899999998776653
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=398.12 Aligned_cols=393 Identities=31% Similarity=0.479 Sum_probs=333.0
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.+.+.++.++|.+.++.+|+++|+.+.++.+||+||+++++++|+.|.+.|+++|++|+++++|+.++++++|||+++|+
T Consensus 2 ~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~ 81 (521)
T PRK06187 2 QDYPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGA 81 (521)
T ss_pred CcccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|+++..+.+++..+++.+++++++++.+....+.+.....+ ....++.+++.... ........+
T Consensus 82 ~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------~~~~~~~~~ 148 (521)
T PRK06187 82 VLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP-------TVRTVIVEGDGPAA------PLAPEVGEY 148 (521)
T ss_pred EEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccC-------CccEEEEecCcccc------ccccccccH
Confidence 99999999999999999999999999999887776666554433 34556655544311 112334556
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
.+++........ .....++++++++|||||||.||+|.++|.++..........+++..++++++..|++|.+++...+
T Consensus 149 ~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 227 (521)
T PRK06187 149 EELLAAASDTFD-FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY 227 (521)
T ss_pred HHHhhcCCccCC-CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHH
Confidence 666554333322 2345678899999999999999999999999998888888888999999999999999999999877
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHh-cC
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ-KG 334 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~-~~ 334 (430)
.++..|+++++.+.+++..+++.++++++|+++++|++++.+.........+ +++||.+++||+++++++.+.+++ ++
T Consensus 228 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~~~l~~v~~~Ge~l~~~~~~~~~~~~~ 306 (521)
T PRK06187 228 LALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVD-FSSLRLVIYGGAALPPALLREFKEKFG 306 (521)
T ss_pred HHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccC-cchhhEEEEcCcCCCHHHHHHHHHHhC
Confidence 7999999999998889999999999999999999999999999887765555 899999999999999999999984 49
Q ss_pred cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccc
Q 048242 335 FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMK 414 (430)
Q Consensus 335 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~ 414 (430)
+++++.||+||+++.+..+..+..... ......++|+|++++ +++|+|++ +++++.+.++.|||+++|++++.
T Consensus 307 ~~v~~~YG~tE~~~~~~~~~~~~~~~~-----~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~~~g~~Gel~v~~~~~~~ 379 (521)
T PRK06187 307 IDLVQGYGMTETSPVVSVLPPEDQLPG-----QWTKRRSAGRPLPGV-EARIVDDD-GDELPPDGGEVGEIIVRGPWLMQ 379 (521)
T ss_pred cchheeeccCccCcccccCCccccccc-----ccccCCccccccCCe-EEEEECCC-CCCCCCCCCCeeEEEEECcchhh
Confidence 999999999999877666543321000 112457899999999 89999988 88998822289999999999999
Q ss_pred cccCCcccchHhhhCC
Q 048242 415 GYLKNPKANEEAFANG 430 (430)
Q Consensus 415 gY~~~~~~t~~~f~dg 430 (430)
||+++++.+.+.|.+|
T Consensus 380 ~y~~~~~~~~~~~~~~ 395 (521)
T PRK06187 380 GYWNRPEATAETIDGG 395 (521)
T ss_pred hhcCCHHHHHHHhhCC
Confidence 9999999998888654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=407.07 Aligned_cols=374 Identities=18% Similarity=0.154 Sum_probs=292.9
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECC-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhh
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYES-----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVP 91 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 91 (430)
....++.++|++.++.+|+++|+++.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~ 115 (614)
T PRK08180 36 DYPRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAM 115 (614)
T ss_pred CcCccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 346689999999999999999998742 689999999999999999999999999999999999999999999999
Q ss_pred hcCCeeeeccccCC-----hhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccc
Q 048242 92 MTGAVLNCINFRLN-----PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEY 166 (430)
Q Consensus 92 ~~G~~~~~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (430)
++|++++|++|.++ .+++.++++.++++++|++.... +......... ....++..++...
T Consensus 116 ~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~--~~~~~~~~~~------~~~~~i~~~~~~~------- 180 (614)
T PRK08180 116 YAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA--FARALAAVVP------ADVEVVAVRGAVP------- 180 (614)
T ss_pred HcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH--HHHHHhhhcc------CCceEEEecCCCC-------
Confidence 99999999999988 78999999999999999976421 1111111110 1122333332110
Q ss_pred cccCCccchhhhhhcCCCCC--CCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCC--CCCEEEec
Q 048242 167 ALSKGVTEYEKLLETGDPEF--AWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMK--EGAVYLWT 242 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~~~~~~~ 242 (430)
......+.+++....... .......++++++|+|||||||.||||++||+++..++......++.. .++++++.
T Consensus 181 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~ 258 (614)
T PRK08180 181 --GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDW 258 (614)
T ss_pred --CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEe
Confidence 011244555554321111 111234578999999999999999999999999998887777666653 56899999
Q ss_pred cCchhhhhhH-HHHHHHhhcceEEEeC-CCCH---HHHHHHHHhhCceEEeeccHHHHHHHcCCCC----CCCCCCCcee
Q 048242 243 LPIFHGNGWC-FTWSLAALCGTSVMLR-QASA---KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE----DTILPLPHVV 313 (430)
Q Consensus 243 ~pl~h~~gl~-~~~~~l~~g~~~v~~~-~~~~---~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~----~~~~~l~~lr 313 (430)
+|++|.+|+. .++.+++.|+++++.+ .+++ ..+++.++++++|+++++|.+++.+++.... ...+ +++||
T Consensus 259 lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~-~~~lr 337 (614)
T PRK08180 259 LPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRF-FSRLK 337 (614)
T ss_pred cchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhh-cccee
Confidence 9999999976 4667788899998875 3443 4678899999999999999999999864321 1233 78999
Q ss_pred EEeecCCCCCHHHHHHHHh-----cC--cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEE
Q 048242 314 NVNTGGSPPPPPILLAMSQ-----KG--FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDV 386 (430)
Q Consensus 314 ~v~~~G~~l~~~~~~~~~~-----~~--~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v 386 (430)
.+++||+++++++.+++++ ++ +++++.||+||+++.++.+... ....+++|+|++++ +++|
T Consensus 338 ~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~v~i 405 (614)
T PRK08180 338 LLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP-----------LSRAGNIGLPAPGC-EVKL 405 (614)
T ss_pred EEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc-----------cCCCCcccCccCCc-EEEE
Confidence 9999999999999999885 23 7899999999998666543221 12357999999999 9999
Q ss_pred eeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh-CC
Q 048242 387 LDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA-NG 430 (430)
Q Consensus 387 ~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~-dg 430 (430)
+|++ ..|||+++|++++.|||++|+.|.+.|. ||
T Consensus 406 ~d~~----------~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dg 440 (614)
T PRK08180 406 VPVG----------GKLEVRVKGPNVTPGYWRAPELTAEAFDEEG 440 (614)
T ss_pred ecCC----------CCcEEEEecCccchhhcCChhHhHhhcccCC
Confidence 9864 4699999999999999999999999984 54
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=407.78 Aligned_cols=387 Identities=14% Similarity=0.134 Sum_probs=297.1
Q ss_pred HHHHHHHHh-hCCCcceEEEC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 23 LWFLERAAT-VHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 23 ~~~l~~~~~-~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.++|+++++ .+|+++|+++. .+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga 170 (666)
T PLN02654 91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA 170 (666)
T ss_pred HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 567777765 48999999973 27899999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHH---------HHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccc
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFAL---------AEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEY 166 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (430)
+++|+++.++.+++.++++.++++++|+++..... +......... .......++..+...........
T Consensus 171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (666)
T PLN02654 171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAK---NGVSVGICLTYENQLAMKREDTK 247 (666)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccc---cCCCccEEEEecccccccccccc
Confidence 99999999999999999999999999998764321 1111111000 00011222222221100000000
Q ss_pred cccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHH-HHHHHHhhcCCCCCCEEEeccCc
Q 048242 167 ALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYL-MSLNVVLTWGMKEGAVYLWTLPI 245 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~pl 245 (430)
........|++++.... .........++++++|+|||||||+||||+++|.+++. ........++++.+|++++..|+
T Consensus 248 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 326 (666)
T PLN02654 248 WQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADC 326 (666)
T ss_pred cccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCc
Confidence 00011223445443221 11112235679999999999999999999999999754 34455667789999999999999
Q ss_pred hhhhhhH-HHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeec
Q 048242 246 FHGNGWC-FTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTG 318 (430)
Q Consensus 246 ~h~~gl~-~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~ 318 (430)
+|++|.. .++.+++.|+++++++. +++..+++.|+++++|+++++|++++.+.+.... ...+ +++||.++++
T Consensus 327 ~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~Lr~i~~~ 405 (666)
T PLN02654 327 GWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHS-RKSLRVLGSV 405 (666)
T ss_pred hhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCC-hhheeEEEEe
Confidence 9999876 46778899999999863 5799999999999999999999999999886532 2334 8899999999
Q ss_pred CCCCCHHHHHHHH-hcC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCC
Q 048242 319 GSPPPPPILLAMS-QKG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQP 394 (430)
Q Consensus 319 G~~l~~~~~~~~~-~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~ 394 (430)
|+++++++.+++. .+| +++.+.||+||+++..+...... ...+.+++|+|++|+ +++|+|++ |++
T Consensus 406 Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~---------~~~~~gs~G~p~~g~-~v~i~d~~-g~~ 474 (666)
T PLN02654 406 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---------WPQKPGSATFPFFGV-QPVIVDEK-GKE 474 (666)
T ss_pred cCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCC---------CCCCCCccCCCCCCc-eEEEECCC-CCC
Confidence 9999999999988 566 78999999999987665432210 112458899999999 99999987 899
Q ss_pred CCCCCCceeEEEEec--CcccccccCCcccchHhh
Q 048242 395 IPADGKTIGEVVMRG--NMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 395 ~~~~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~f 427 (430)
++.+ +.|||++++ |+++.|||+|++.+.+.|
T Consensus 475 ~~~~--~~Gel~v~~~~p~~~~gy~~~~~~~~~~~ 507 (666)
T PLN02654 475 IEGE--CSGYLCVKKSWPGAFRTLYGDHERYETTY 507 (666)
T ss_pred CCCC--CceEEEEcCCCchhhhhhcCChHHHHHhh
Confidence 9876 789999999 799999999999987765
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=396.28 Aligned_cols=379 Identities=22% Similarity=0.302 Sum_probs=311.6
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..++.+++.+.++.+|+++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~ 101 (537)
T PLN02246 22 HLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV 101 (537)
T ss_pred CCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEE
Confidence 458999999999999999999975 478999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++.+++..+++.+++++++++......+...... ....++.+++.. .....+.
T Consensus 102 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---------~~~~~i~~~~~~-----------~~~~~~~ 161 (537)
T PLN02246 102 TTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED---------DGVTVVTIDDPP-----------EGCLHFS 161 (537)
T ss_pred EecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc---------CCceEEEeCCCC-----------CCceeHH
Confidence 99999999999999999999999999988766655443221 123445454321 1123344
Q ss_pred hhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh----hcCCCCCCEEEeccCchhhhhhH
Q 048242 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL----TWGMKEGAVYLWTLPIFHGNGWC 252 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~pl~h~~gl~ 252 (430)
++........ ......++++++++|||||||.||+|+++|+++...+..... .+++..+|++++.+|++|.+++.
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~ 240 (537)
T PLN02246 162 ELTQADENEL-PEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLN 240 (537)
T ss_pred HHhcCCCCCC-CCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHH
Confidence 4433222111 122346789999999999999999999999999877665433 46788999999999999999986
Q ss_pred H-HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH
Q 048242 253 F-TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS 331 (430)
Q Consensus 253 ~-~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~ 331 (430)
. ++.++..|+++++.+.+++..+++.|+++++|++.++|+++..+.+........ ++++|.++.||+++++++.+.++
T Consensus 241 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~ 319 (537)
T PLN02246 241 SVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYD-LSSIRMVLSGAAPLGKELEDAFR 319 (537)
T ss_pred HHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccC-ccceeEEEEecCcCCHHHHHHHH
Confidence 5 566788899999999899999999999999999999999999998876555555 88999999999999999999998
Q ss_pred -hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 332 -QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 332 -~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
.+ +..+++.||+||++++++.+..... +....+.+++|+|++++ +++|+|++++++++.| +.|||+++|
T Consensus 320 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g 390 (537)
T PLN02246 320 AKLPNAVLGQGYGMTEAGPVLAMCLAFAK------EPFPVKSGSCGTVVRNA-ELKIVDPETGASLPRN--QPGEICIRG 390 (537)
T ss_pred HHcCCCeEeccccccccCcccccccccCC------CCccccCCccccccCCc-EEEEecCCCCCcCCCC--CceEEEEEC
Confidence 45 7889999999999766554321100 00112346899999999 9999998779999998 899999999
Q ss_pred CcccccccCCcccchHhhh
Q 048242 410 NMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f~ 428 (430)
++++.|||++++.+.+.|.
T Consensus 391 ~~~~~GY~~~~~~~~~~~~ 409 (537)
T PLN02246 391 PQIMKGYLNDPEATANTID 409 (537)
T ss_pred CchhccccCCchhhhhccc
Confidence 9999999999999988873
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=400.03 Aligned_cols=391 Identities=21% Similarity=0.247 Sum_probs=314.6
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
...++.++++++++++|+++|+++.++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 30 ~~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~ 109 (573)
T PRK05605 30 GDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVV 109 (573)
T ss_pred CcCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcc-------------
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPL------------- 164 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------- 164 (430)
+|++|.++.+++.++++.++++++|+++.....+....... ....++.++.........
T Consensus 110 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (573)
T PRK05605 110 VEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT--------PLETIVSVNMIAAMPLLQRLALRLPIPALRK 181 (573)
T ss_pred eecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc--------ccceeEeeecccccccccccccccccccccc
Confidence 99999999999999999999999999887655544432211 122333332110000000
Q ss_pred ----cccccCCccchhhhhhcCCCC---CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC--CCC
Q 048242 165 ----EYALSKGVTEYEKLLETGDPE---FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG--MKE 235 (430)
Q Consensus 165 ----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~--~~~ 235 (430)
......+...|.++....... ........++++++++|||||||.||+|.++|+++...+......+. ...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~ 261 (573)
T PRK05605 182 ARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG 261 (573)
T ss_pred cccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCC
Confidence 000112334566655432211 01112356789999999999999999999999999877665443332 235
Q ss_pred CCEEEeccCchhhhhhHH-HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeE
Q 048242 236 GAVYLWTLPIFHGNGWCF-TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVN 314 (430)
Q Consensus 236 ~~~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~ 314 (430)
++++++.+|++|.+|+.. .+.++..|+++++.+.+++..+++.++++++|++.++|.+++.+.+.......+ +++||.
T Consensus 262 ~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~ 340 (573)
T PRK05605 262 PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVD-LSGVRN 340 (573)
T ss_pred CcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCC-chhccE
Confidence 789999999999999874 556778899999998899999999999999999999999999999877665556 899999
Q ss_pred EeecCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCC-C
Q 048242 315 VNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKT-N 392 (430)
Q Consensus 315 v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~-~ 392 (430)
+++||+++++++.++++ .++.++++.||+||+++++..+.... ....+++|+|++++ +++|+|+++ +
T Consensus 341 i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~d~~~~~ 409 (573)
T PRK05605 341 AFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSD----------DRRPGYVGVPFPDT-EVRIVDPEDPD 409 (573)
T ss_pred EEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCccc----------CCcCCccccCCCCC-EEEEEcCCCCC
Confidence 99999999999999998 46899999999999987766543221 12347899999999 999999885 5
Q ss_pred CCCCCCCCceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 393 QPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 393 ~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
++++.+ +.|||+++|+.++.||+++++.+.+.|.+|
T Consensus 410 ~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g 445 (573)
T PRK05605 410 ETMPDG--EEGELLVRGPQVFKGYWNRPEETAKSFLDG 445 (573)
T ss_pred ccCCCC--CeeEEEEecCchhhhhcCChhHhhhcccCC
Confidence 888888 899999999999999999999998887554
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-50 Score=396.49 Aligned_cols=366 Identities=21% Similarity=0.265 Sum_probs=303.5
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|.+.++++|+++|+++.++++||.||.++++++|+.|.++|+++|++|+++++|++++++++|||+++|++++
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 36799999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.++++++|++.+....+.......+ ....++.+.+.. ....++++
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~~~~~~~~ 182 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCP-------QATRIVAWTDED------------HDLTVEVL 182 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhcc-------ccceEEEecCCc------------ccccHHHH
Confidence 99999999999999999999999999876655544332211 222233332211 01233333
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
....... .....+++.++++|||||||.||+|+++|.+++.........+.+..+++++...|++|.+|+...+.++
T Consensus 183 ~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l 259 (537)
T PRK13382 183 IAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAA 259 (537)
T ss_pred hhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHH
Confidence 3221111 1123467899999999999999999999999888877777778888999999999999999998888888
Q ss_pred hhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCCCHHHHHHHH-hcCc
Q 048242 259 ALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPPPPPILLAMS-QKGF 335 (430)
Q Consensus 259 ~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~ 335 (430)
..|+++++...+++..+++.|+++++|+++++|+++..+.+.... ...+ ++++|.+++||+++++++.+.|. .++.
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~~~~ 338 (537)
T PRK13382 260 SLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYS-GRSLRFAAASGSRMRPDVVIAFMDQFGD 338 (537)
T ss_pred hcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCC-ccceeEEEEcCCCCCHHHHHHHHHHcCC
Confidence 999999988889999999999999999999999999999876532 2233 67999999999999999999998 6688
Q ss_pred EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccccc
Q 048242 336 RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKG 415 (430)
Q Consensus 336 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~g 415 (430)
++++.||+||++..+..+.. ......+++|+|++++ +++|+|++ +++++.| +.|||+++|++++.|
T Consensus 339 ~i~~~YG~TE~~~~~~~~~~----------~~~~~~~~vG~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~~g 404 (537)
T PRK13382 339 VIYNNYNATEAGMIATATPA----------DLRAAPDTAGRPAEGT-EIRILDQD-FREVPTG--EVGTIFVRNDTQFDG 404 (537)
T ss_pred cEEecccccccCcceecChh----------HhccCCCCccccCcCc-EEEEECCC-CCCCCCC--CeeEEEEEcCCcccC
Confidence 99999999999865553321 1112457899999999 99999998 9999988 899999999999999
Q ss_pred ccCCcccc
Q 048242 416 YLKNPKAN 423 (430)
Q Consensus 416 Y~~~~~~t 423 (430)
|+ ++.+
T Consensus 405 Y~--~~~~ 410 (537)
T PRK13382 405 YT--SGST 410 (537)
T ss_pred cc--ccch
Confidence 98 4444
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=394.41 Aligned_cols=367 Identities=22% Similarity=0.359 Sum_probs=307.6
Q ss_pred CHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 21 TPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 21 t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
.+.+.|++.++.+|+++|+++.++.+||+||.++++++|+.|.+ .|+++|++|+++++|++++++++|||+++|++++|
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 57889999999999999999999999999999999999999985 69999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhh
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL 179 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
+++.++.+++..+++.++++.++++++....+....... ....++.+.+ +.+..
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------------------~~~~~ 136 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS--------YVQRVISITS------------------LKEIE 136 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc--------CcceEEEecc------------------hHhhh
Confidence 999999999999999999999999887655444332211 1222333322 11111
Q ss_pred hcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HHHHH
Q 048242 180 ETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TWSLA 258 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~~~l 258 (430)
..... ......++++++++|||||||.||+|.++|.++..........+++..+|++++.+|++|.+|+.. .+.++
T Consensus 137 ~~~~~---~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l 213 (496)
T PRK06839 137 DRKID---NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTL 213 (496)
T ss_pred ccCCC---CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHH
Confidence 11111 112345688999999999999999999999999777666667778889999999999999999875 46677
Q ss_pred hhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEE
Q 048242 259 ALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVT 338 (430)
Q Consensus 259 ~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~ 338 (430)
..|+++++.+.+++..+++.++++++|++.++|.+++.+.........+ ++++|.+++||+++++.+.+.+++.|+++.
T Consensus 214 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~ 292 (496)
T PRK06839 214 FAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN-LQSVRWFYNGGAPCPEELMREFIDRGFLFG 292 (496)
T ss_pred hcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCC-CcccceEEECCCCCCHHHHHHHHHhCCeeE
Confidence 8899998888899999999999999999999999999999887655556 899999999999999999999997799999
Q ss_pred eeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccC
Q 048242 339 HVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLK 418 (430)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~ 418 (430)
+.||+||++..++...... .....+++|+|++++ +++|+|++ ++.++.| +.|||+|+|++++.||++
T Consensus 293 ~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~ 359 (496)
T PRK06839 293 QGFGMTETSPTVFMLSEED---------ARRKVGSIGKPVLFC-DYELIDEN-KNKVEVG--EVGELLIRGPNVMKEYWN 359 (496)
T ss_pred eeccCCCCCcceEeccccc---------ccccCCCCcccCCCc-eEEEECCC-cCCCCCC--CceEEEEECCCcchhhcC
Confidence 9999999986554332211 112457899999999 99999998 7788888 899999999999999999
Q ss_pred CcccchHhhhCC
Q 048242 419 NPKANEEAFANG 430 (430)
Q Consensus 419 ~~~~t~~~f~dg 430 (430)
+++.+...|.||
T Consensus 360 ~~~~~~~~~~~g 371 (496)
T PRK06839 360 RPDATEETIQDG 371 (496)
T ss_pred ChHHHHHHHcCC
Confidence 999998887654
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=395.27 Aligned_cols=384 Identities=18% Similarity=0.237 Sum_probs=314.5
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCcceEEECC-eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 14 PANFTALTPLWFLERAATVHPTRKSVVYES-KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 14 ~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
...+...++.++|++.++.+|+++|+++.+ +.+||+||+++++++|+.|.+.|+++||+|+++++|++++++++|||++
T Consensus 17 ~~~~~~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~ 96 (547)
T PRK06087 17 QGYWGDASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLK 96 (547)
T ss_pred cCCCCCCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 345667789999999999999999999876 7999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEecccc-----HHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY-----FALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA 167 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (430)
+|++++|++|..+.+++.++++.+++++++++... ...+........ ....++.++.....
T Consensus 97 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------- 162 (547)
T PRK06087 97 VGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP-------QLQQIVGVDKLAPA------- 162 (547)
T ss_pred cCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCC-------CCcEEEEeCCcCCC-------
Confidence 99999999999999999999999999999997532 223333322222 33455555543211
Q ss_pred ccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchh
Q 048242 168 LSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h 247 (430)
.....+.+++....... .......+++++|+|||||||.||+|.++|.++..........+++..++++++.+|++|
T Consensus 163 --~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h 239 (547)
T PRK06087 163 --TSSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH 239 (547)
T ss_pred --cCccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHH
Confidence 11224444443322211 112356789999999999999999999999999888777777788899999999999999
Q ss_pred hhhhH-HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHH
Q 048242 248 GNGWC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPI 326 (430)
Q Consensus 248 ~~gl~-~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 326 (430)
.+|+. .++.+++.|+++++.+.+++..+++.|+++++|+++.+|.++..++........+ +++||.+++||+++++++
T Consensus 240 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~-~~~lr~i~~gG~~~~~~~ 318 (547)
T PRK06087 240 ATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPAD-LSALRFFLCGGTTIPKKV 318 (547)
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCC-CCCeEEEEEcCCCCCHHH
Confidence 99977 4666778899999999899999999999999999998888777777665444445 889999999999999999
Q ss_pred HHHHHhcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEE
Q 048242 327 LLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVV 406 (430)
Q Consensus 327 ~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~ 406 (430)
.+.+.+.++++++.||+||+++........ ......+++|+|++++ +++|+|++ +++++.| +.|||+
T Consensus 319 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~ 385 (547)
T PRK06087 319 ARECQQRGIKLLSVYGSTESSPHAVVNLDD---------PLSRFMHTDGYAAAGV-EIKVVDEA-RKTLPPG--CEGEEA 385 (547)
T ss_pred HHHHHHcCCcEEEEecccccCCccccCCCc---------chhhcCCcCCccCCCc-eEEEEcCC-CCCCcCC--CcceEE
Confidence 999888899999999999998765543211 0112236789999999 89999977 8999988 899999
Q ss_pred EecCcccccccCCcccchHhhh
Q 048242 407 MRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 407 v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
++|++++.||+++++.+...|.
T Consensus 386 v~g~~~~~gy~~~~~~~~~~~~ 407 (547)
T PRK06087 386 SRGPNVFMGYLDEPELTARALD 407 (547)
T ss_pred EecccccccccCCHHHHHHHhC
Confidence 9999999999999999888773
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=394.85 Aligned_cols=386 Identities=23% Similarity=0.250 Sum_probs=315.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHH
Q 048242 10 LPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFG 89 (430)
Q Consensus 10 ~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 89 (430)
....+-+....++.++|++.++.+|+++|+++.++++||+||.+++.++|..|.+.|+++|++|+++++|++++++++||
T Consensus 11 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA 90 (542)
T PRK06155 11 RAVDPLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLG 90 (542)
T ss_pred hhcccCCccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence 34445556677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccccc
Q 048242 90 VPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALS 169 (430)
Q Consensus 90 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (430)
|+++|++++|++|.++.+++.++++.+++++++++.+....+........ ....++.++...... ..
T Consensus 91 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~ 157 (542)
T PRK06155 91 CAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDL-------PLPAVWLLDAPASVS------VP 157 (542)
T ss_pred HHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccccc-------CcceEEEecCccccc------cc
Confidence 99999999999999999999999999999999998876665544322111 234455554322100 00
Q ss_pred CCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhh
Q 048242 170 KGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGN 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~ 249 (430)
.. ....+... ...........++++++|+|||||||.||+|+++|.++..........+++..++++++.+|++|.+
T Consensus 158 ~~-~~~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~ 234 (542)
T PRK06155 158 AG-WSTAPLPP--LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTN 234 (542)
T ss_pred cc-cchhhhcc--cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHH
Confidence 00 00001100 0011111234678999999999999999999999999988877777788899999999999999999
Q ss_pred hhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 250 GWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 250 gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
++...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+........ .+++|.++.+| +++.+.++
T Consensus 235 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~g~--~~~~~~~~ 311 (542)
T PRK06155 235 ALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDR-AHRVRVALGPG--VPAALHAA 311 (542)
T ss_pred HHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccc-cCceEEEEEcC--CCHHHHHH
Confidence 9988888999999999998899999999999999999999999999999877655555 78899887655 57888888
Q ss_pred HH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEe
Q 048242 330 MS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMR 408 (430)
Q Consensus 330 ~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~ 408 (430)
++ .+++++++.||+||++..+..+.. ....+++|++.+++ +++|+|++ +++++.| +.|||+++
T Consensus 312 ~~~~~~~~v~~~YG~tE~~~~~~~~~~------------~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gei~v~ 375 (542)
T PRK06155 312 FRERFGVDLLDGYGSTETNFVIAVTHG------------SQRPGSMGRLAPGF-EARVVDEH-DQELPDG--EPGELLLR 375 (542)
T ss_pred HHHHcCCCEEeeecccccCccccCCCC------------CCCCCCcCccCCCc-eEEEECCC-CCCCCCC--CceEEEEe
Confidence 87 679999999999999876654321 12347899999999 99999987 9999998 89999999
Q ss_pred cC---cccccccCCcccchHhhhCC
Q 048242 409 GN---MVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 409 g~---~v~~gY~~~~~~t~~~f~dg 430 (430)
|+ +++.||+++++.+.+.|.+|
T Consensus 376 ~~~~~~~~~GY~~~~~~~~~~~~~~ 400 (542)
T PRK06155 376 ADEPFAFATGYFGMPEKTVEAWRNL 400 (542)
T ss_pred cCCccccchhhcCCHHHHHHhhcCC
Confidence 98 69999999999998887653
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=357.79 Aligned_cols=382 Identities=24% Similarity=0.322 Sum_probs=328.0
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
-|...++.+++.+++.++|+++|+++.++.+||+||.+++.++|..|.++|+++||+|.+-+||..++++++||++++|+
T Consensus 24 yW~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv 103 (542)
T COG1021 24 YWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGV 103 (542)
T ss_pred cccCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCc
Confidence 36688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccc-----cHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccC
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQ-----YFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSK 170 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (430)
.+|.--|.....++.+..+...++..|.+.. ....+.+.....+ ..+.+++.++...+
T Consensus 104 ~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~-------tlr~v~v~ge~~~~---------- 166 (542)
T COG1021 104 APVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHP-------TLRHVIVAGEAEHP---------- 166 (542)
T ss_pred chhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCC-------cceEEEEccCCCCc----------
Confidence 9998888888999999999999999998763 2334444544443 55667766543211
Q ss_pred CccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhh
Q 048242 171 GVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~g 250 (430)
......+...........+.+++++++.+-+.||||+||-+..||+.-.-++....+-+++...++.++.+|..|.+.
T Consensus 167 --~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfp 244 (542)
T COG1021 167 --SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFP 244 (542)
T ss_pred --chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCC
Confidence 112222222233333335677889999999999999999999999987777777777788999999999999999998
Q ss_pred hHH--HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHH
Q 048242 251 WCF--TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILL 328 (430)
Q Consensus 251 l~~--~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~ 328 (430)
+.+ .+..++.|+++|+.++.++.....+|++++||+..++|.+...++...+....+ ++|||.+-+||+.+++++.+
T Consensus 245 lssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~-LsSLrllQVGGarl~~~~Ar 323 (542)
T COG1021 245 LSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERAD-LSSLRLLQVGGARLSATLAR 323 (542)
T ss_pred CCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCC-chheeEEeecCcccCHHHHh
Confidence 884 777888999999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred HHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEE
Q 048242 329 AMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVM 407 (430)
Q Consensus 329 ~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v 407 (430)
++. .+|+.+.+.|||.|. .+.+...+ +..+....+.|+|+....+++|+|.+ |+++++| |+|+|..
T Consensus 324 rv~~~lgC~LQQVFGMAEG--LvnyTRLD--------Dp~E~i~~TQGrPlsP~DEvrvvD~d-g~pv~pG--E~G~Llt 390 (542)
T COG1021 324 RVPAVLGCQLQQVFGMAEG--LVNYTRLD--------DPPEIIIHTQGRPLSPDDEVRVVDAD-GNPVAPG--EVGELLT 390 (542)
T ss_pred hchhhhCchHHHHhhhhhh--hhcccccC--------CchHheeecCCCcCCCcceeEEecCC-CCCCCCC--Ccceeee
Confidence 998 789999999999994 44444332 33445667899999988899999999 9999999 9999999
Q ss_pred ecCcccccccCCcccchHhh-hCC
Q 048242 408 RGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 408 ~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
|||..++|||+-|+-++..| .||
T Consensus 391 RGPYTirGYyrap~HNa~aF~a~G 414 (542)
T COG1021 391 RGPYTIRGYYRAPEHNARAFDADG 414 (542)
T ss_pred cCCeeeeeeccCchhhhhccCcCC
Confidence 99999999999999999999 565
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=400.95 Aligned_cols=381 Identities=21% Similarity=0.247 Sum_probs=295.1
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCe----------eeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHH
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESK----------HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVH 87 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~----------~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 87 (430)
...++.++|++.++++|+++|+++.+. ++||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 4 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~ 83 (552)
T PRK09274 4 SMANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALT 83 (552)
T ss_pred hhhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHH
Confidence 456788999999999999999998654 8999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccc
Q 048242 88 FGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA 167 (430)
Q Consensus 88 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (430)
|||+++|++++|++|.++.+++.++++.++++++|++.+.. .......... .....++.++...
T Consensus 84 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-~~~~~~~~~~------~~~~~~i~~~~~~--------- 147 (552)
T PRK09274 84 FALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH-LARRLFGWGK------PSVRRLVTVGGRL--------- 147 (552)
T ss_pred HHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH-HHHHHhccCc------cchhheecccccc---------
Confidence 99999999999999999999999999999999999875211 1111100000 0122233332210
Q ss_pred ccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchh
Q 048242 168 LSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h 247 (430)
..+...+.++...............++++++|+|||||||.||+|+++|.++...+......+++..+++.++.+|++|
T Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~ 226 (552)
T PRK09274 148 -LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFA 226 (552)
T ss_pred -ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHH
Confidence 0111234443322111111122346789999999999999999999999999998888888889999999999999988
Q ss_pred hhhhHHHHHHHhhcceEEEeC-------CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCC
Q 048242 248 GNGWCFTWSLAALCGTSVMLR-------QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGS 320 (430)
Q Consensus 248 ~~gl~~~~~~l~~g~~~v~~~-------~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~ 320 (430)
.+++ ..|+++++.+ .+++..+++.|+++++|+++++|++++.+.+.......+ +++||.+++||+
T Consensus 227 ~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~ 298 (552)
T PRK09274 227 LFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIK-LPSLRRVISAGA 298 (552)
T ss_pred hhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCC-CchhhEEEecCC
Confidence 6553 3577777653 468899999999999999999999999999876544455 899999999999
Q ss_pred CCCHHHHHHHH-hc--CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCC-------
Q 048242 321 PPPPPILLAMS-QK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTK------- 390 (430)
Q Consensus 321 ~l~~~~~~~~~-~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~------- 390 (430)
++++++.++++ .+ ++++++.||+||++++++....... .............++|+|++++ +++|+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~-~~~~~~~~~~~~~~vG~~~~~~-~~~ivd~~~~~~~~~ 376 (552)
T PRK09274 299 PVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREIL-FATRAATDNGAGICVGRPVDGV-EVRIIAISDAPIPEW 376 (552)
T ss_pred cCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhh-ccccccccCCCCcccCccCCCc-eEEEEeccccccccc
Confidence 99999999998 45 5799999999999876554321100 0000000011224799999999 99999953
Q ss_pred -CCCCCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 391 -TNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 391 -~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
++++++.| +.|||+++|++++.|||++++.|...|
T Consensus 377 ~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~ 412 (552)
T PRK09274 377 DDALRLATG--EIGEIVVAGPMVTRSYYNRPEATRLAK 412 (552)
T ss_pred cccccCCCC--CeeEEEEecCcccccccCChHHhhhhh
Confidence 36788888 899999999999999999999998876
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=396.01 Aligned_cols=385 Identities=18% Similarity=0.236 Sum_probs=303.8
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
.++.++|++.++.+|+++|+++.++++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v 103 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 489999999999999999999988999999999999999999997 5999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCC--Cc-------------
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDR--AP------------- 163 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~------------- 163 (430)
|++|..+.+++.++++.++++++|++.+....+.+..... ..+.++..+...... ..
T Consensus 104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (562)
T PRK05677 104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT--------GVKHVIVTEVADMLPPLKRLLINAVVKHVKKM 175 (562)
T ss_pred ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc--------CcceeEEecccccccchhhhhcccchhhcccc
Confidence 9999999999999999999999999877655444432211 122233222110000 00
Q ss_pred ccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC--CC-CCCEEE
Q 048242 164 LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG--MK-EGAVYL 240 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~--~~-~~~~~~ 240 (430)
...........+.+.+..............++++++++|||||||+||+|+++|+++...+......+. +. ..++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK05677 176 VPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI 255 (562)
T ss_pred ccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence 000000112334444433322221223456789999999999999999999999999877665555443 33 346889
Q ss_pred eccCchhhhhhHH-HHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeec
Q 048242 241 WTLPIFHGNGWCF-TWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318 (430)
Q Consensus 241 ~~~pl~h~~gl~~-~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~ 318 (430)
+.+|++|.+++.. .+..+..|++.++.+ .+++..+++.|+++++|+++++|+++..+.........+ ++++|.+++|
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~v~~g 334 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLD-FSALKLTLSG 334 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCC-hhhceEEEEc
Confidence 9999999999874 555566777766664 578999999999999999999999999998765444444 7899999999
Q ss_pred CCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCC
Q 048242 319 GSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPA 397 (430)
Q Consensus 319 G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~ 397 (430)
|+++++++.++|+ .+++++++.||+||+++.+..+... ....+++|+|++++ +++|+|++ +++++.
T Consensus 335 G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~v~i~d~~-~~~~~~ 401 (562)
T PRK05677 335 GMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQ-----------AIQVGTIGIPVPST-LCKVIDDD-GNELPL 401 (562)
T ss_pred CccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCcc-----------CCCCCccCccCCCC-EEEEECCC-CCCCCC
Confidence 9999999999998 4599999999999987766543321 11347899999999 99999987 899999
Q ss_pred CCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 398 DGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 398 ~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
| +.|||+++|++++.||+++++.|.+.|.
T Consensus 402 g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~ 430 (562)
T PRK05677 402 G--EVGELCVKGPQVMKGYWQRPEATDEILD 430 (562)
T ss_pred C--CCeEEEEecCccchhhcCCchhhhhccC
Confidence 8 8999999999999999999999998884
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=397.69 Aligned_cols=377 Identities=21% Similarity=0.265 Sum_probs=297.0
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECC--eeeeHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYES--KHYTWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
..++.+.+... +.+|+++|+++.. .++||+||.++++++|+.|.+ .|+++||+|+++++|++++++++|||+++|+
T Consensus 39 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 117 (560)
T PLN02574 39 NLDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGG 117 (560)
T ss_pred CCCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCe
Confidence 34444444333 6789999999854 479999999999999999998 8999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++|..+.+++.++++.+++++++++.+....+... . ..++.+++...... .......|
T Consensus 118 v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~-----~~~~~~~~ 179 (560)
T PLN02574 118 IVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------------G-VPVIGVPENYDFDS-----KRIEFPKF 179 (560)
T ss_pred EEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------------C-CcEEecCccccccc-----CccCcccH
Confidence 999999999999999999999999999987654443221 1 12222221100000 00122345
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh----hcC-CCCCCEEEeccCchhhhh
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL----TWG-MKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~----~~~-~~~~~~~~~~~pl~h~~g 250 (430)
.+++....... ......++++++++|||||||.||+|+++|+++...+..... .+. ...+++++..+|++|.+|
T Consensus 180 ~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 258 (560)
T PLN02574 180 YELIKEDFDFV-PKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYG 258 (560)
T ss_pred HHHhhcCCccc-ccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHH
Confidence 55444332221 123346789999999999999999999999999887765543 122 235678899999999999
Q ss_pred hHH-HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC-CCCCCCCceeEEeecCCCCCHHHHH
Q 048242 251 WCF-TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE-DTILPLPHVVNVNTGGSPPPPPILL 328 (430)
Q Consensus 251 l~~-~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~-~~~~~l~~lr~v~~~G~~l~~~~~~ 328 (430)
+.. .+.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+.... ...+ +++||.+++||+++++++.+
T Consensus 259 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~ 337 (560)
T PLN02574 259 LSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEV-LKSLKQVSCGAAPLSGKFIQ 337 (560)
T ss_pred HHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCc-cccceEEEEecccCCHHHHH
Confidence 875 45566779999999889999999999999999999999999999987543 2344 88999999999999999999
Q ss_pred HHH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEE
Q 048242 329 AMS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVV 406 (430)
Q Consensus 329 ~~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~ 406 (430)
+++ .+ ++++++.||+||++..++.....+ .....+++|++.+++ +++|+|++++++++.| +.|||+
T Consensus 338 ~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~---------~~~~~~~vG~~~~~~-~v~i~d~~~g~~~~~g--~~Gei~ 405 (560)
T PLN02574 338 DFVQTLPHVDFIQGYGMTESTAVGTRGFNTE---------KLSKYSSVGLLAPNM-QAKVVDWSTGCLLPPG--NCGELW 405 (560)
T ss_pred HHHHHCCCCcEEecccccccCceeecCCCcc---------ccCCCCceeeeCCCc-EEEEEeCCCCcCCCCC--CCeEEE
Confidence 988 55 789999999999976544322111 112357899999999 9999997779999998 899999
Q ss_pred EecCcccccccCCcccchHhhh
Q 048242 407 MRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 407 v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
|+|++++.|||+|++.|++.|.
T Consensus 406 v~g~~~~~GY~~~~~~t~~~~~ 427 (560)
T PLN02574 406 IQGPGVMKGYLNNPKATQSTID 427 (560)
T ss_pred EECcchhhhhcCChhHhhhhcc
Confidence 9999999999999999998873
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=398.90 Aligned_cols=376 Identities=19% Similarity=0.261 Sum_probs=307.9
Q ss_pred HHHHHHHHHh-hCCCcceEEECC----eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 22 PLWFLERAAT-VHPTRKSVVYES----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 22 ~~~~l~~~~~-~~p~~~a~~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..+.+++++. .+|+++|+.+.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 45 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v 124 (570)
T PRK04319 45 AYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI 124 (570)
T ss_pred HHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 4467887776 579999998743 68999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|+++.++++++.++++.+++++++++......... ... +....++.+++... ...+...+.
T Consensus 125 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~--------~~~~~~~~~ 187 (570)
T PRK04319 125 VGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDL-------PSLKHVLLVGEDVE--------EGPGTLDFN 187 (570)
T ss_pred EcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcC-------CCceEEEEECCCcC--------CCcCccCHH
Confidence 9999999999999999999999999998765443221 111 13344555543211 112334566
Q ss_pred hhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH-HHH
Q 048242 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-FTW 255 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~-~~~ 255 (430)
+.+....... ......++++++++|||||||.||+|+++|.++...+......+++..+|++++..|++|.+|.. .++
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~ 266 (570)
T PRK04319 188 ALMEQASDEF-DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIF 266 (570)
T ss_pred HHHhhcCCcC-CccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHH
Confidence 6554433221 11334678999999999999999999999999988888777788889999999999999998866 577
Q ss_pred HHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCCCHHHHHHHH-
Q 048242 256 SLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPPPPPILLAMS- 331 (430)
Q Consensus 256 ~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~~~~- 331 (430)
.++..|+++++.. .+++..+++.|+++++|+++++|++++.+.+.... ...+ +++||.++++|+++++++.++++
T Consensus 267 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~ 345 (570)
T PRK04319 267 APWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYD-LSSLRHILSVGEPLNPEVVRWGMK 345 (570)
T ss_pred HHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCC-cccceEEEEcccCCCHHHHHHHHH
Confidence 8888999988875 58999999999999999999999999999876432 2334 88999999999999999999998
Q ss_pred hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec--
Q 048242 332 QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG-- 409 (430)
Q Consensus 332 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g-- 409 (430)
.++.++++.||+||+++.+....... ....+++|+|++++ +++|+|++ +++++.| +.|||+++|
T Consensus 346 ~~g~~i~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~p~~g~-~~~i~d~~-~~~~~~g--~~Gel~i~~~~ 411 (570)
T PRK04319 346 VFGLPIHDNWWMTETGGIMIANYPAM----------DIKPGSMGKPLPGI-EAAIVDDQ-GNELPPN--RMGNLAIKKGW 411 (570)
T ss_pred HhCCCeEeceeecccCCEEEecCCCC----------CCCCCcCcCCCCCC-EEEEECCC-CCCCCCC--CceEEEEcCCC
Confidence 57999999999999986654332211 11347899999999 99999987 8888888 899999997
Q ss_pred CcccccccCCcccchHhhhCC
Q 048242 410 NMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f~dg 430 (430)
++++.|||++++.+.+.|.||
T Consensus 412 ~~~~~GY~~~~~~~~~~~~~g 432 (570)
T PRK04319 412 PSMMRGIWNNPEKYESYFAGD 432 (570)
T ss_pred ChHHhHhcCCHHHhhhhhcCC
Confidence 899999999999999988654
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=395.10 Aligned_cols=380 Identities=23% Similarity=0.325 Sum_probs=317.0
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
-.+++.+.+++.++.+|+++|+++.++.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~ 94 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIA 94 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|+++..+.+++.++++.+++++++++......+.......+ ....++.+++.. ..+...+.+
T Consensus 95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~ 157 (542)
T PRK07786 95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVP-------LLSTVVVAGGSS----------DDSVLGYED 157 (542)
T ss_pred EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccC-------ccceEEEecCCC----------cccccCHHH
Confidence 999999999999999999999999998876655443322222 334455544321 122345666
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCC-CCCCEEEeccCchhhhhhHHHHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGM-KEGAVYLWTLPIFHGNGWCFTWS 256 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~pl~h~~gl~~~~~ 256 (430)
++........ ......+++++++|||||||.||+|.++|+++...+......+++ ..++++++..|++|.+|+..++.
T Consensus 158 ~~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~ 236 (542)
T PRK07786 158 LLAEAGPAHA-PVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLP 236 (542)
T ss_pred HhhccCCCCC-CCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHH
Confidence 5544332221 234556789999999999999999999999998888877777776 67889999999999999988888
Q ss_pred HHhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc
Q 048242 257 LAALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK 333 (430)
Q Consensus 257 ~l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~ 333 (430)
++..|+++++.+ .+++..+++.++++++|+++++|+++..+......... ..++|.+++||+++++++.++++ .+
T Consensus 237 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~--~~~lr~i~~gg~~~~~~~~~~~~~~~ 314 (542)
T PRK07786 237 GLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR--DLALRVLSWGAAPASDTLLRQMAATF 314 (542)
T ss_pred HHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc--CcceEEEEECCCCCCHHHHHHHHHHc
Confidence 999999999875 57999999999999999999999999999987654433 23799999999999999999998 55
Q ss_pred -CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcc
Q 048242 334 -GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMV 412 (430)
Q Consensus 334 -~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v 412 (430)
+.++++.||+||+++..+.+... ......+++|+|++++ .++|+|++ ++.++.+ +.|||+++|+.+
T Consensus 315 ~~~~l~~~YG~tE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~ 381 (542)
T PRK07786 315 PEAQILAAFGQTEMSPVTCMLLGE---------DAIRKLGSVGKVIPTV-AARVVDEN-MNDVPVG--EVGEIVYRAPTL 381 (542)
T ss_pred CCCeEEeeecccccccceEecCcc---------cccccCCCccccCCCc-eEEEECCC-CCCCcCC--CceEEEEEChhh
Confidence 89999999999997665433211 1123447899999999 89999977 8999988 899999999999
Q ss_pred cccccCCcccchHhhhCC
Q 048242 413 MKGYLKNPKANEEAFANG 430 (430)
Q Consensus 413 ~~gY~~~~~~t~~~f~dg 430 (430)
+.||+++++.+.+.|.+|
T Consensus 382 ~~gy~~~~~~~~~~f~~~ 399 (542)
T PRK07786 382 MSGYWNNPEATAEAFAGG 399 (542)
T ss_pred hhhhcCCHHHHHHHhhCC
Confidence 999999999999888653
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=391.73 Aligned_cols=378 Identities=24% Similarity=0.299 Sum_probs=314.2
Q ss_pred CHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeec
Q 048242 21 TPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCI 100 (430)
Q Consensus 21 t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l 100 (430)
++.++|++.++.+|+++|+.+.++++||+||.+++.++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhh
Q 048242 101 NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180 (430)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (430)
++..+.+++..+++.+++++++++.+....+........ ....++.+++...... .......|+++..
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 148 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCH-------DLRTLILVGEPAHASE-----GGGESPSWPKLLA 148 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhccc-------ccceEEEecCcccccC-----CccccccHHHhhc
Confidence 999999999999999999999998876555444332221 3344555554321110 1122345555544
Q ss_pred cCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhh
Q 048242 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~ 260 (430)
..... .......+++++++|||||||.||+|.+||.++...+......+.+..+|++++.+|++|.+++..++.++..
T Consensus 149 ~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 226 (515)
T TIGR03098 149 LGDAD--PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYV 226 (515)
T ss_pred ccccc--ccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHc
Confidence 32221 1123456789999999999999999999999999888887778888999999999999999999988999999
Q ss_pred cceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-CcEEE
Q 048242 261 CGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK-GFRVT 338 (430)
Q Consensus 261 g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~-~~~v~ 338 (430)
|+++++.+.+++..+++.++++++|++.++|+++..+.+..... .+ ++++|.++++|+++++.+.++++ .+ +..++
T Consensus 227 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-~~-~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 304 (515)
T TIGR03098 227 GATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPE-SA-APSLRYLTNSGGAMPRATLSRLRSFLPNARLF 304 (515)
T ss_pred CCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccCC-CC-ccceEEEEecCCcCCHHHHHHHHHHCCCCeEe
Confidence 99999998899999999999999999999999999998753322 23 78999999999999999999998 45 78999
Q ss_pred eeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccC
Q 048242 339 HVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLK 418 (430)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~ 418 (430)
+.||+||++....... .....+.+++|+|++++ +++|+|++ ++.++.+ +.|||+++|+.++.|||+
T Consensus 305 ~~YG~tE~~~~~~~~~----------~~~~~~~~~vG~~~~~~-~~~i~~~~-~~~~~~~--~~Gel~v~g~~~~~gy~~ 370 (515)
T TIGR03098 305 LMYGLTEAFRSTYLPP----------EEVDRRPDSIGKAIPNA-EVLVLRED-GSECAPG--EEGELVHRGALVAMGYWN 370 (515)
T ss_pred eeeccccccceEeccc----------ccccCCCCCcceecCCC-EEEEECCC-CCCCCCC--CceEEEEcCchhhccccC
Confidence 9999999865433211 11123457899999999 89999977 8999888 899999999999999999
Q ss_pred CcccchHhhh
Q 048242 419 NPKANEEAFA 428 (430)
Q Consensus 419 ~~~~t~~~f~ 428 (430)
+++.+.+.|.
T Consensus 371 ~~~~~~~~~~ 380 (515)
T TIGR03098 371 DPEKTAERFR 380 (515)
T ss_pred Cchhhhhhhh
Confidence 9999887763
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=393.19 Aligned_cols=388 Identities=24% Similarity=0.325 Sum_probs=313.0
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcC
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTG 94 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 94 (430)
++....++.++|.+.++.+|+++|+++.++++||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|
T Consensus 2 ~~~~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 81 (528)
T PRK07470 2 MSRRVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLG 81 (528)
T ss_pred CcccCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCC
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccc
Q 048242 95 AVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTE 174 (430)
Q Consensus 95 ~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (430)
++++|+++..+.+++.++++.++++.++++.+............. ....++.++... ....
T Consensus 82 ~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~~~~ 142 (528)
T PRK07470 82 AVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASP-------DLTHVVAIGGAR------------AGLD 142 (528)
T ss_pred eEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCC-------cCceEEEeCCCc------------cccc
Confidence 999999999999999999999999999999877655544433222 234455544321 1134
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc--CCCCCCEEEeccCchhhhhhH
Q 048242 175 YEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW--GMKEGAVYLWTLPIFHGNGWC 252 (430)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~pl~h~~gl~ 252 (430)
+.+++..............++++++|+|||||||.||+|+++|.++...+......+ +....|+++..+|++|.+++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 222 (528)
T PRK07470 143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH 222 (528)
T ss_pred HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH
Confidence 555544322222222345678999999999999999999999999865544332222 467889999999999999987
Q ss_pred HHHHHHhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHH
Q 048242 253 FTWSLAALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAM 330 (430)
Q Consensus 253 ~~~~~l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~ 330 (430)
..+ .+..|++.++.+ .+++..+++.|+++++|+++++|++++.+.........+ ++++|.+++||+++++.+.+++
T Consensus 223 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~ 300 (528)
T PRK07470 223 QLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYD-HSSLRYVIYAGAPMYRADQKRA 300 (528)
T ss_pred HHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCC-CcceEEEEEcCCCCCHHHHHHH
Confidence 544 566788877764 578999999999999999999999999999877655556 8999999999999999999888
Q ss_pred H-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 331 S-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 331 ~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
. .++.++++.||+||+++.++.+..... .. ........+++|+|.+++ +++|+|++ +++++.| +.|||+++|
T Consensus 301 ~~~~g~~~~~~YG~TE~~~~~~~~~~~~~--~~-~~~~~~~~~~~G~~~~g~-~~~i~d~~-~~~~~~g--~~Gel~i~~ 373 (528)
T PRK07470 301 LAKLGKVLVQYFGLGEVTGNITVLPPALH--DA-EDGPDARIGTCGFERTGM-EVQIQDDE-GRELPPG--ETGEICVIG 373 (528)
T ss_pred HHHhCcHHHHhCCCcccCCceeecchhhc--cc-cccccceeeccCcccCCc-EEEEECCC-CCCCCCC--CceEEEEeC
Confidence 7 678899999999999876654432100 00 000122457899999999 89999987 9999988 899999999
Q ss_pred CcccccccCCcccchHhhhCC
Q 048242 410 NMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f~dg 430 (430)
++++.||+++++.+.+.|.||
T Consensus 374 ~~~~~gy~~~~~~~~~~~~~~ 394 (528)
T PRK07470 374 PAVFAGYYNNPEANAKAFRDG 394 (528)
T ss_pred CccchhhcCCHHHHHhhhcCC
Confidence 999999999999998887554
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=389.76 Aligned_cols=403 Identities=54% Similarity=0.969 Sum_probs=317.2
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
...++++.+.|++.++.+|+++|+++.+..+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~ 93 (545)
T PRK08162 14 NYVPLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGA 93 (545)
T ss_pred ccccCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCc
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++|..+.+++.++++.++++.++++.+....+.+.....+ . ...+.++....... .....+..++
T Consensus 94 ~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~---~~~~~~~~~~ 162 (545)
T PRK08162 94 VLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLP-------G-PKPLVIDVDDPEYP---GGRFIGALDY 162 (545)
T ss_pred EEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCC-------C-CceEEEecCccccc---cCCCcccccH
Confidence 99999999999999999999999999999887766655543332 1 21222322110000 0011233456
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
.+++....+......+...+++++|+|||||||.||+|+++|+++..........+.+..++++++.+|++|.+++...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~ 242 (545)
T PRK08162 163 EAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPW 242 (545)
T ss_pred HHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHH
Confidence 66655433332222233456899999999999999999999999877766666667788899999999999999988766
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCc
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGF 335 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~ 335 (430)
...+.|++.++...+++..+++.++++++|+++++|++++.+++........ +.+++.++++|+.+++.+.+.++++++
T Consensus 243 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~ 321 (545)
T PRK08162 243 TVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAG-IDHPVHAMVAGAAPPAAVIAKMEEIGF 321 (545)
T ss_pred HHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccC-CccceEEEECCCCCCHHHHHHHHHhCC
Confidence 6666788888888899999999999999999999999999999875544333 566777889999999999999988899
Q ss_pred EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccccc
Q 048242 336 RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKG 415 (430)
Q Consensus 336 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~g 415 (430)
++++.||+||+++.++.+...+.+...+.........++|.+.+....++|+|++++++++.++++.|||+++|++++.|
T Consensus 322 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~g 401 (545)
T PRK08162 322 DLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKG 401 (545)
T ss_pred ceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhh
Confidence 99999999999766665543333322222222223356777766553688999876888876543579999999999999
Q ss_pred ccCCcccchHhhhCC
Q 048242 416 YLKNPKANEEAFANG 430 (430)
Q Consensus 416 Y~~~~~~t~~~f~dg 430 (430)
|+++++.+...|.+|
T Consensus 402 Y~~~~~~~~~~~~~g 416 (545)
T PRK08162 402 YLKNPKATEEAFAGG 416 (545)
T ss_pred hcCChhhhHHHhhCC
Confidence 999999999998654
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=390.10 Aligned_cols=384 Identities=26% Similarity=0.336 Sum_probs=319.6
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
...++.++|.+.++.+|+++|+++.++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~ 88 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|+++..+.+++.++++.+++++++++.+....+.+...... ...+........ .........+.+
T Consensus 89 v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~------~~~~~~~~~~~~ 154 (523)
T PRK08316 89 VPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--------VDTLILSLVLGG------REAPGGWLDFAD 154 (523)
T ss_pred EecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--------ccceeeeecccc------cccccchhhHHH
Confidence 999999999999999999999999999887666554432211 011111110000 011123345555
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TWS 256 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~~ 256 (430)
........ ........+++++++|||||||.||+|.++|.++..........+++..++++++.+|++|..++.. ++.
T Consensus 155 ~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~ 233 (523)
T PRK08316 155 WAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGP 233 (523)
T ss_pred HHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHH
Confidence 44433222 1223456789999999999999999999999999888887888888999999999999999999875 445
Q ss_pred HHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHh-c-C
Q 048242 257 LAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ-K-G 334 (430)
Q Consensus 257 ~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~-~-~ 334 (430)
++..|+++++.+.+++..+++.++++++|+++++|.++..+.+.......+ ++++|.+++||++++.++.+.+++ + +
T Consensus 234 ~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gg~~~~~~~~~~~~~~~~~ 312 (523)
T PRK08316 234 YLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRD-LSSLRKGYYGASIMPVEVLKELRERLPG 312 (523)
T ss_pred HHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCC-cccceEEEEcCCcCCHHHHHHHHHHcCC
Confidence 677899999998889999999999999999999999999999887665556 899999999999999999999984 5 7
Q ss_pred cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccc
Q 048242 335 FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMK 414 (430)
Q Consensus 335 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~ 414 (430)
.++++.||+||++.+++.+...+ .....+++|+|++++ +++|.|++ +++++.| +.|||+++|++++.
T Consensus 313 ~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gei~v~~~~~~~ 379 (523)
T PRK08316 313 LRFYNCYGQTEIAPLATVLGPEE---------HLRRPGSAGRPVLNV-ETRVVDDD-GNDVAPG--EVGEIVHRSPQLML 379 (523)
T ss_pred CceeeeecccccCccccccCccc---------cccccCCcccCCCCc-EEEEEcCC-CCCCCCC--CcceEEEECCchhh
Confidence 89999999999987766543321 122357899999999 89999987 8999988 89999999999999
Q ss_pred cccCCcccchHhhhCC
Q 048242 415 GYLKNPKANEEAFANG 430 (430)
Q Consensus 415 gY~~~~~~t~~~f~dg 430 (430)
||+++++.+.+.|.+|
T Consensus 380 ~y~~~~~~~~~~~~~~ 395 (523)
T PRK08316 380 GYWDDPEKTAEAFRGG 395 (523)
T ss_pred hhcCCHHHHHHHhhCC
Confidence 9999999998888654
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=399.66 Aligned_cols=381 Identities=17% Similarity=0.252 Sum_probs=300.0
Q ss_pred HHHHHHHHHhhCCCcceEEECC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 22 PLWFLERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 22 ~~~~l~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
..+.|+++++.+|+++|+++.+ +++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 59 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 138 (625)
T TIGR02188 59 SYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA 138 (625)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence 4577778888899999999743 5899999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccH---------HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccc
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYF---------ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEY 166 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (430)
+++|++|.++.+++.++++.++++++|+++... ..+.+.....+. ....++.++.......
T Consensus 139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---- 208 (625)
T TIGR02188 139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPV------SVEHVLVVRRTGNPVP---- 208 (625)
T ss_pred EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCC------CccEEEEEcCCCCCcC----
Confidence 999999999999999999999999999987532 222222221110 1234555443211100
Q ss_pred cccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHH-HHHhhcCCCCCCEEEeccCc
Q 048242 167 ALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL-NVVLTWGMKEGAVYLWTLPI 245 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~pl 245 (430)
........+++++...... .......++++++|+|||||||+||||+++|.++..... .....+++..+|++++..|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 287 (625)
T TIGR02188 209 WVEGRDVWWHDLMAKASAY-CEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADV 287 (625)
T ss_pred ccccccccHHHHHhhcCCC-CCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCc
Confidence 0011123455555443222 122345678999999999999999999999999765443 34445678899999999999
Q ss_pred hhhhhhH-HHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeec
Q 048242 246 FHGNGWC-FTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTG 318 (430)
Q Consensus 246 ~h~~gl~-~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~ 318 (430)
+|+.+.. .++.++..|+++++++. +++..+++.++++++|+++++|++++.+.+.... ...+ +++||.++++
T Consensus 288 ~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~~ 366 (625)
T TIGR02188 288 GWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHD-LSSLRLLGSV 366 (625)
T ss_pred hhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCC-ccceeEEEEe
Confidence 9998865 47778899999999853 4799999999999999999999999999876532 2234 8899999999
Q ss_pred CCCCCHHHHHHHH-hcC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCC
Q 048242 319 GSPPPPPILLAMS-QKG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQP 394 (430)
Q Consensus 319 G~~l~~~~~~~~~-~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~ 394 (430)
|+++++++.++++ .++ +++++.||+||+++.++...... ...+.+++|+|++++ +++|+|++ |++
T Consensus 367 G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~---------~~~~~~~~G~p~~g~-~~~i~d~~-g~~ 435 (625)
T TIGR02188 367 GEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGA---------TPTKPGSATLPFFGI-EPAVVDEE-GNP 435 (625)
T ss_pred cCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCC---------CCcCCCcccCCcCCc-eEEEECCC-CCC
Confidence 9999999999998 444 78999999999987655432210 112457899999999 99999976 999
Q ss_pred CC-CCCCceeEEEEec--CcccccccCCcccchHhh
Q 048242 395 IP-ADGKTIGEVVMRG--NMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 395 ~~-~~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~f 427 (430)
++ .+ +.|||+++| |+++.|||++++.+.+.|
T Consensus 436 ~~~~g--~~GeL~v~~p~p~~~~gy~~~~~~~~~~~ 469 (625)
T TIGR02188 436 VEGPG--EGGYLVIKQPWPGMLRTIYGDHERFVDTY 469 (625)
T ss_pred CCCCC--CeEEEEEccCCCcccccccCChHHHHHHH
Confidence 98 77 899999999 689999999999887765
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=399.41 Aligned_cols=379 Identities=19% Similarity=0.238 Sum_probs=299.7
Q ss_pred HHHHHHHHhhCCCcceEEECC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 23 LWFLERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 23 ~~~l~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
.+.|+++++.+|+++|+++.+ +++||+||.+++.++|+.|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 467888888999999999743 47999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccH---------HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccc
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYF---------ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA 167 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (430)
++|++|.++.+++.++++.++++++|+++... ..+.+.....+ ....++.++....... .
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~ 218 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCP-------SVEKVIVVRRTGGDVD----W 218 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCC-------CccEEEEEcCCCCCcC----c
Confidence 99999999999999999999999999976542 22222222221 3345555543211000 0
Q ss_pred ccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHH-HHHhhcCCCCCCEEEeccCch
Q 048242 168 LSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL-NVVLTWGMKEGAVYLWTLPIF 246 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~pl~ 246 (430)
.......+.+++...... .......++++++|+|||||||+||||+++|.+++.... .....+++..+|++++..|++
T Consensus 219 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 297 (637)
T PRK00174 219 VEGRDLWWHELVAGASDE-CEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVG 297 (637)
T ss_pred CCCCcccHHHHHhhcCCC-CCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCch
Confidence 011223455555432221 122345678999999999999999999999999865443 344456788899999999999
Q ss_pred hhhhhH-HHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecC
Q 048242 247 HGNGWC-FTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGG 319 (430)
Q Consensus 247 h~~gl~-~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G 319 (430)
|..+.. .++.++..|+++++.+. +++..+++.|+++++|+++++|++++.+.+.... ...+ +++||.++++|
T Consensus 298 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~~G 376 (637)
T PRK00174 298 WVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYD-LSSLRLLGSVG 376 (637)
T ss_pred HhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCC-ccceeEEEEeC
Confidence 998875 57778899999998753 4789999999999999999999999999876532 2234 78999999999
Q ss_pred CCCCHHHHHHHH-hcC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCC
Q 048242 320 SPPPPPILLAMS-QKG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPI 395 (430)
Q Consensus 320 ~~l~~~~~~~~~-~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~ 395 (430)
+++++++.++++ .++ +++++.||+||+++.++...... ...+.+++|+|++++ +++|+|++ ++++
T Consensus 377 e~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~~vG~p~~g~-~~~i~d~~-g~~~ 445 (637)
T PRK00174 377 EPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA---------TPLKPGSATRPLPGI-QPAVVDEE-GNPL 445 (637)
T ss_pred CCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC---------CCcCCCcccCCCCCc-eEEEECCC-CCCC
Confidence 999999999887 454 78999999999987655332210 012347899999999 99999987 9999
Q ss_pred CCCCCceeEEEEec--CcccccccCCcccchHhh
Q 048242 396 PADGKTIGEVVMRG--NMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 396 ~~~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~f 427 (430)
+.| +.|||+|+| |++++|||++++.+.+.|
T Consensus 446 ~~g--~~Gel~v~g~~p~~~~gy~~~~~~~~~~~ 477 (637)
T PRK00174 446 EGG--EGGNLVIKDPWPGMMRTIYGDHERFVKTY 477 (637)
T ss_pred CCC--CcEEEEEcCCCCcccccccCCHHHHHHhh
Confidence 988 899999999 699999999999887765
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=468.24 Aligned_cols=364 Identities=18% Similarity=0.200 Sum_probs=310.4
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++|++|+|+++|++++++++|||+++|++++
T Consensus 3094 ~~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~v 3173 (3956)
T PRK12467 3094 ERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYV 3173 (3956)
T ss_pred cccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.+++++++++......+... ....++.++....
T Consensus 3174 pld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------------~~~~~~~~~~~~~------------------- 3222 (3956)
T PRK12467 3174 PLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------------AGDTALTLDRLDL------------------- 3222 (3956)
T ss_pred cCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------------cCCceeeecchhh-------------------
Confidence 999999999999999999999999987653322110 1122233322110
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
.............++++++|+|||||||+||||+++|+++.+.+.+....++++.+|+++...|++|..++...+.++
T Consensus 3223 --~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L 3300 (3956)
T PRK12467 3223 --NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTL 3300 (3956)
T ss_pred --cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHH
Confidence 001111111335678999999999999999999999999999999999999999999999999999999998999999
Q ss_pred hhcceEEEeCC--CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHh-c-C
Q 048242 259 ALCGTSVMLRQ--ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ-K-G 334 (430)
Q Consensus 259 ~~g~~~v~~~~--~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~-~-~ 334 (430)
+.|+++++.+. +++..+++.|+++++|+++++|++++.+.+.... .+ +++||.+++||+++++++.++|++ + +
T Consensus 3301 ~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--~~-~~~lr~~~~gGe~~~~~~~~~~~~~~~~ 3377 (3956)
T PRK12467 3301 ICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG--AD-CASLDIYVFGGEAVPPAAFEQVKRKLKP 3377 (3956)
T ss_pred hCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc--cC-CCCceEEEEecCCCCHHHHHHHHHhCCC
Confidence 99999999875 7899999999999999999999999999875422 23 789999999999999999999984 4 6
Q ss_pred cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccc
Q 048242 335 FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMK 414 (430)
Q Consensus 335 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~ 414 (430)
+.++|.||+||+++.++......+ ........++|+|++|+ +++|+|.+ +++++.| ++|||+|+|+++++
T Consensus 3378 ~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~~~~~iG~p~~~~-~~~v~d~~-~~~vp~G--~~GEL~i~G~~v~~ 3447 (3956)
T PRK12467 3378 RGLTNGYGPTEAVVTVTLWKCGGD------AVCEAPYAPIGRPVAGR-SIYVLDGQ-LNPVPVG--VAGELYIGGVGLAR 3447 (3956)
T ss_pred CEEEeCcccchhEeeeEEEecccc------cccCCCCCCCccccCCC-EEEEECCC-CCCCCCC--CCceEEEcchhhhh
Confidence 889999999999877765433211 00112346899999999 99999987 9999999 99999999999999
Q ss_pred cccCCcccchHhhh
Q 048242 415 GYLKNPKANEEAFA 428 (430)
Q Consensus 415 gY~~~~~~t~~~f~ 428 (430)
||+|+|++|+++|.
T Consensus 3448 GY~~~~~~T~~~F~ 3461 (3956)
T PRK12467 3448 GYHQRPSLTAERFV 3461 (3956)
T ss_pred hccCCcccchhhcc
Confidence 99999999999994
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=387.68 Aligned_cols=376 Identities=21% Similarity=0.276 Sum_probs=305.9
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
+...++.++|++.++.+|+++|+++.++++||+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++|++
T Consensus 20 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 99 (527)
T TIGR02275 20 WQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIA 99 (527)
T ss_pred ccCCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHH-----HHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCC
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFA-----LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (430)
++++++..+.+++.++++.++++.++++..... .........+ ....++...+....
T Consensus 100 ~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------- 161 (527)
T TIGR02275 100 PVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLP-------TLRNIIVAGQTRVE----------- 161 (527)
T ss_pred EeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCC-------cceEEEEecCCCCc-----------
Confidence 999999999999999999999999999865321 1111111111 22333333221100
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 172 VTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
....+.+...... .......++++++++|||||||.||+|+++|.++..++......+.+..+|++++.+|++|.+++
T Consensus 162 -~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~ 239 (527)
T TIGR02275 162 -AELFLWLESPAEP-VKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPL 239 (527)
T ss_pred -chhhHHhhCcCcc-ccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhh
Confidence 0111111111111 11124567899999999999999999999999999888888888889999999999999999998
Q ss_pred HH--HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 252 CF--TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 252 ~~--~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
.. .+.++..|+++++.+.+++..+++.++++++|+++++|.+++.+.+.......+ ++++|.+++||+++++++.++
T Consensus 240 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~ 318 (527)
T TIGR02275 240 SSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYD-LSSLKLLQVGGAKFSEAAARR 318 (527)
T ss_pred hHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHH
Confidence 74 677788899998888889999999999999999999999999998877655555 899999999999999999999
Q ss_pred HH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccc-cccceEEeeCCCCCCCCCCCCceeEEEE
Q 048242 330 MS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCM-CLEGLDVLDTKTNQPIPADGKTIGEVVM 407 (430)
Q Consensus 330 ~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~-~~~~~~v~d~~~~~~~~~~~~~~Gel~v 407 (430)
++ .++.++++.||+||++....... .. .....+++|+|++ +. +++|+|++ +++++.| +.|||++
T Consensus 319 ~~~~~g~~~~~~YG~tE~~~~~~~~~-~~---------~~~~~~~~G~~~~~~~-~v~i~d~~-g~~~~~g--~~Gei~v 384 (527)
T TIGR02275 319 VPAVFGCQLQQVFGMAEGLVNYTRLD-DP---------AEIIFTTQGRPMSPDD-EVRVVDDH-GNPVAPG--ETGMLLT 384 (527)
T ss_pred HHHHhCCeEEeeeccCccCccccCCC-Cc---------cccccccCCCCCCCCc-eEEEECCC-CCCCCCC--CceEEEe
Confidence 98 57999999999999653332111 00 0123468999995 67 89999987 8999988 8999999
Q ss_pred ecCcccccccCCcccchHhh
Q 048242 408 RGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 408 ~g~~v~~gY~~~~~~t~~~f 427 (430)
+|++++.|||++++.+.+.|
T Consensus 385 ~g~~~~~gY~~~~~~~~~~~ 404 (527)
T TIGR02275 385 RGPYTFRGYYKAPEHNAAAF 404 (527)
T ss_pred cCCccchhhcCChhHhHhhc
Confidence 99999999999999998887
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=400.10 Aligned_cols=377 Identities=18% Similarity=0.151 Sum_probs=288.6
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCcceEEECC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHH
Q 048242 14 PANFTALTPLWFLERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVH 87 (430)
Q Consensus 14 ~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 87 (430)
++.....++.++|++.++.+|+++|+++.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 43 ~~~~~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 122 (624)
T PRK12582 43 PLGPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT 122 (624)
T ss_pred CCCCcccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence 334457789999999999999999998753 68999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCeeeeccccCCh-----hhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCC
Q 048242 88 FGVPMTGAVLNCINFRLNP-----LNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRA 162 (430)
Q Consensus 88 lA~~~~G~~~~~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (430)
|||+++|++++|++|.++. +++.++++.++++++|+++... .......... ....++.++....
T Consensus 123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~------~~~~~i~~~~~~~--- 191 (624)
T PRK12582 123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP--FARALAALDL------LDVTVVHVTGPGE--- 191 (624)
T ss_pred HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH--HHHHHHhhhh------cCceEEEEcCCCc---
Confidence 9999999999999999885 8999999999999999986421 1111111110 1122344432210
Q ss_pred cccccccCCccchhhhhhcCCCCC--CCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCC---CC
Q 048242 163 PLEYALSKGVTEYEKLLETGDPEF--AWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKE---GA 237 (430)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~---~~ 237 (430)
......+.++........ .......++++++|+|||||||.||||+++|+++...+......+.... .+
T Consensus 192 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~ 265 (624)
T PRK12582 192 ------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPP 265 (624)
T ss_pred ------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCc
Confidence 011234555443322110 0112345789999999999999999999999999887766655444443 57
Q ss_pred EEEeccCchhhhhhHH-HHHHHhhcceEEEeCC-CCH---HHHHHHHHhhCceEEeeccHHHHHHHcCCCCC----CCCC
Q 048242 238 VYLWTLPIFHGNGWCF-TWSLAALCGTSVMLRQ-ASA---KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED----TILP 308 (430)
Q Consensus 238 ~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~~~-~~~---~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~----~~~~ 308 (430)
++++++|++|.+|+.. ++.++..|+++++.+. +++ ..+++.++++++|+++++|.+++.+.+..... ..+
T Consensus 266 ~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~- 344 (624)
T PRK12582 266 VSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSF- 344 (624)
T ss_pred eEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHH-
Confidence 9999999999999875 5566778888888652 333 45677889999999999999999887643221 123
Q ss_pred CCceeEEeecCCCCCHHHHHHHHhc-------CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccc
Q 048242 309 LPHVVNVNTGGSPPPPPILLAMSQK-------GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCL 381 (430)
Q Consensus 309 l~~lr~v~~~G~~l~~~~~~~~~~~-------~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 381 (430)
+++||.+++||+++++++.+++++. ++++++.||+||+++++...... ..+.+++|+|++|+
T Consensus 345 ~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~ 413 (624)
T PRK12582 345 FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD-----------TERVGLIGLPLPGV 413 (624)
T ss_pred hhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC-----------CCCCCCCCcCCCCc
Confidence 6899999999999999999999853 36899999999997655432211 12357899999999
Q ss_pred cceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhh-hCC
Q 048242 382 EGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 382 ~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
+++|++. | +.|||+|+|++++.|||++|++|++.| .||
T Consensus 414 -~v~i~~~--------G--~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dg 452 (624)
T PRK12582 414 -ELKLAPV--------G--DKYEVRVKGPNVTPGYHKDPELTAAAFDEEG 452 (624)
T ss_pred -EEEEccC--------C--CceEEEEECCcccccccCCccchhhhcCccC
Confidence 8998643 4 789999999999999999999999988 344
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=399.80 Aligned_cols=379 Identities=20% Similarity=0.253 Sum_probs=295.9
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHH
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
...++.++|++.++.+|+++|+++.+ +.+||+||.++++++|+.|.+. +++||+|+++++|++++++++|
T Consensus 19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l 97 (631)
T PRK07769 19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF 97 (631)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence 44689999999999999999998732 5899999999999999999987 8999999999999999999999
Q ss_pred HhhhcCCeeeec-cccCC--hhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccc
Q 048242 89 GVPMTGAVLNCI-NFRLN--PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165 (430)
Q Consensus 89 A~~~~G~~~~~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (430)
||+++|++++|+ ++..+ .+++.++++.++++++|++.+....+.......+.. ....++.++....
T Consensus 98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~------ 166 (631)
T PRK07769 98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAK-----ERPRVIAVDAVPD------ 166 (631)
T ss_pred HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhcccc-----ccceEEEcccccc------
Confidence 999999999999 45554 578999999999999999887655444332221100 1122333321100
Q ss_pred ccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCc
Q 048242 166 YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI 245 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl 245 (430)
... .. .......++++++|+|||||||.||||+++|+++...+......+++..++++++.+|+
T Consensus 167 ------------~~~---~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl 230 (631)
T PRK07769 167 ------------EVG---AT-WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPF 230 (631)
T ss_pred ------------ccc---cc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCC
Confidence 000 00 00113457899999999999999999999999999888888788888999999999999
Q ss_pred hhhhhhHHHHHHHhhcceEEEeCC--C--CHHHHHHHHHhhCc---eEEeeccHHHHHHHcC---CCC--CCCCCCCcee
Q 048242 246 FHGNGWCFTWSLAALCGTSVMLRQ--A--SAKAIYKAIAEHGV---TNFCAAPIVLNSIVNA---PPE--DTILPLPHVV 313 (430)
Q Consensus 246 ~h~~gl~~~~~~l~~g~~~v~~~~--~--~~~~~~~~l~~~~v---t~~~~~p~~l~~l~~~---~~~--~~~~~l~~lr 313 (430)
+|.+|+...+.+++.|++++++.. + ++..+++.+.++++ +++..+|.++..+... ... ...+ +++||
T Consensus 231 ~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~-l~~lr 309 (631)
T PRK07769 231 FHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLD-LSNVK 309 (631)
T ss_pred cCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcc-hhhee
Confidence 999999887888888999988853 4 88999999999986 7889999988776642 111 1234 89999
Q ss_pred EEeecCCCCCHHHHHHHH-hc---Cc---EEEeeecCccccccccccccCCCCCC--CCh--------------hhhhhh
Q 048242 314 NVNTGGSPPPPPILLAMS-QK---GF---RVTHVYGLSEINGPATVCAWNPNWDS--LPF--------------EAQARL 370 (430)
Q Consensus 314 ~v~~~G~~l~~~~~~~~~-~~---~~---~v~~~YG~tE~~~~~~~~~~~~~~~~--~~~--------------~~~~~~ 370 (430)
.+++||+++++++.++|. .+ |+ .+++.||+||++++++.......... ... ......
T Consensus 310 ~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 389 (631)
T PRK07769 310 GLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVA 389 (631)
T ss_pred eEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCcee
Confidence 999999999999999998 44 33 59999999998766554332111000 000 000112
Q ss_pred ccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 371 NARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 371 ~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
..++|+|.++. +++|+|++++++++.| +.|||+++|++++.|||+++++|+++|.
T Consensus 390 ~~s~G~~~~~~-~~~ivd~~~g~~~~~g--e~GEl~v~gp~v~~GY~~~~~~t~~~f~ 444 (631)
T PRK07769 390 QVSAGKVGVSE-WAVIVDPETASELPDG--QIGEIWLHGNNIGTGYWGKPEETAATFQ 444 (631)
T ss_pred EEeCCCcCCCc-EEEEEcCCCCcCCCCC--CEEEEEecCCCccccccCChhHHHHHHh
Confidence 35899999999 8999998779999988 8999999999999999999999999984
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=391.52 Aligned_cols=394 Identities=24% Similarity=0.328 Sum_probs=314.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhCCCcceEEE--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHH
Q 048242 12 KNPANFTALTPLWFLERAATVHPTRKSVVY--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFG 89 (430)
Q Consensus 12 ~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 89 (430)
+..+.....++.++|++.++.+|+++|+++ .++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la 87 (559)
T PRK08315 8 PTDVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFA 87 (559)
T ss_pred CCcCChhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence 344556677899999999999999999998 457899999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhc------cCCCCCCCCeEEEecCCC
Q 048242 90 VPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEG------KSEGLFKPPVLIVIGDET 158 (430)
Q Consensus 90 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~ 158 (430)
|+++|++++|++|..+.+++.++++.+++++++++.... ..+.+....... .....+....++.++...
T Consensus 88 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (559)
T PRK08315 88 TAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK 167 (559)
T ss_pred HHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence 999999999999999999999999999999999987532 122221111100 000011222333333221
Q ss_pred CCCCcccccccCCccchhhhhhcCCC---C--CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCC
Q 048242 159 CDRAPLEYALSKGVTEYEKLLETGDP---E--FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGM 233 (430)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~ 233 (430)
..+...+.++...... . ........++++++++|||||||.||+|.++|.++..++......+++
T Consensus 168 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~ 237 (559)
T PRK08315 168 ----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL 237 (559)
T ss_pred ----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCC
Confidence 1222344444332211 0 011123457889999999999999999999999999888888888899
Q ss_pred CCCCEEEeccCchhhhhhHH-HHHHHhhcceEEEe-CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCc
Q 048242 234 KEGAVYLWTLPIFHGNGWCF-TWSLAALCGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPH 311 (430)
Q Consensus 234 ~~~~~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~ 311 (430)
..+|+++..+|++|.+++.. ++.++..|+++++. ..+++..+++.++++++|+++++|+++..++......... +++
T Consensus 238 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~-~~~ 316 (559)
T PRK08315 238 TEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFD-LSS 316 (559)
T ss_pred CCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCC-chh
Confidence 99999999999999999874 66677788888854 5689999999999999999999999999998876655555 899
Q ss_pred eeEEeecCCCCCHHHHHHHH-hcCc-EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeC
Q 048242 312 VVNVNTGGSPPPPPILLAMS-QKGF-RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDT 389 (430)
Q Consensus 312 lr~v~~~G~~l~~~~~~~~~-~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~ 389 (430)
||.++++|+++++++.++++ .++. ++++.||+||++..++.+...+. ......++|+|++++ +++|+|+
T Consensus 317 lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~v~i~d~ 387 (559)
T PRK08315 317 LRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDP--------LEKRVTTVGRALPHL-EVKIVDP 387 (559)
T ss_pred hheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccc--------hhhccCCCCccCCCc-EEEEEcC
Confidence 99999999999999999998 5655 49999999999876554432211 112357899999999 9999999
Q ss_pred CCCCCCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 390 KTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 390 ~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
+++++++.| +.|||+|+|++++.|||++++.+.+.|
T Consensus 388 ~~~~~~~~g--~~GEl~v~g~~~~~gy~~~~~~~~~~~ 423 (559)
T PRK08315 388 ETGETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEAI 423 (559)
T ss_pred ccCCcCCCC--CceEEEEECchhhhhhcCChhHHhhcC
Confidence 889999988 899999999999999999999988777
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=392.74 Aligned_cols=382 Identities=19% Similarity=0.228 Sum_probs=295.1
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEECC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYES--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
+..-+.++.+.|.+.++.+|+++|+++.+ +.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||++
T Consensus 9 ~~~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~ 88 (540)
T PRK05857 9 MPQLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAK 88 (540)
T ss_pred cccCCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 33446689999999999999999998643 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
+|++++|+++.++.+++.++++.++++.+++++.............. . ...+.++......
T Consensus 89 ~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~----------- 149 (540)
T PRK05857 89 LGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALH-------S-IPVIAVDIAAVTR----------- 149 (540)
T ss_pred cCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcccccccccc-------c-cceeEeecccccc-----------
Confidence 99999999999999999999999999999998765322211111111 1 1122232211000
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh----hcCCCCCCEEEeccCchhh
Q 048242 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL----TWGMKEGAVYLWTLPIFHG 248 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~pl~h~ 248 (430)
.+.+...... ........++++++++|||||||.||||.++|+++.++...... .+....++++++.+|++|.
T Consensus 150 -~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~ 226 (540)
T PRK05857 150 -ESEHSLDAAS--LAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHI 226 (540)
T ss_pred -cccccccccc--cccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCcccc
Confidence 0000000000 01112346789999999999999999999999999776543321 2345678899999999999
Q ss_pred hhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHH
Q 048242 249 NGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILL 328 (430)
Q Consensus 249 ~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~ 328 (430)
+++...+.+++.|+++++ ..+++..+++.|+++++|+++++|.+++.+.........+ ++++|.+++||++++....+
T Consensus 227 ~~l~~~~~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~ 304 (540)
T PRK05857 227 GGLWWILTCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANAT-VPSLRLVGYGGSRAIAADVR 304 (540)
T ss_pred chHHHHHHHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCc-CccceEEEEcCccCCchhHH
Confidence 999888888889998765 4568899999999999999999999999998876555555 89999999999999888876
Q ss_pred HHHhcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCC-CCC-----CCCCce
Q 048242 329 AMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQ-PIP-----ADGKTI 402 (430)
Q Consensus 329 ~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~-~~~-----~~~~~~ 402 (430)
+++.+++++++.||+||++........... .....+.+++|+|++|+ +++|+|++ ++ +++ .+ +.
T Consensus 305 ~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~g~-~v~i~d~~-~~~~~~~~~~~~~--~~ 374 (540)
T PRK05857 305 FIEATGVRTAQVYGLSETGCTALCLPTDDG------SIVKIEAGAVGRPYPGV-DVYLAATD-GIGPTAPGAGPSA--SF 374 (540)
T ss_pred HHHHhCCeeecccCCCcCCceeeecccccc------cccccccCCcCcccCCc-EEEEECcc-ccCccccccCCCC--Cc
Confidence 555779999999999999754332221110 00011347899999999 99999987 44 332 34 78
Q ss_pred eEEEEecCcccccccCCcccchHhhhCC
Q 048242 403 GEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 403 Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
|||+++|++++.|||+++++|.+.|.||
T Consensus 375 Gel~v~g~~~~~GY~~~~~~t~~~~~~g 402 (540)
T PRK05857 375 GTLWIKSPANMLGYWNNPERTAEVLIDG 402 (540)
T ss_pred ceEEEeCcchhhhhhCCccchhhhcCCC
Confidence 9999999999999999999999988664
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=387.12 Aligned_cols=388 Identities=28% Similarity=0.439 Sum_probs=308.5
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEEC--C--eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhc
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYE--S--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMT 93 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~--~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 93 (430)
.+.++.++|++.++.+|+++++.+. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~ 87 (539)
T PRK07008 8 MPLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS 87 (539)
T ss_pred CCCCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 3457999999999999999888752 2 68999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCcc
Q 048242 94 GAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVT 173 (430)
Q Consensus 94 G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (430)
|++++|++|..+++++..+++.+++++++++.++...+.+...... ....++.+.+..... .......
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-----~~~~~~~ 155 (539)
T PRK07008 88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCP-------NVKGWVAMTDAAHLP-----AGSTPLL 155 (539)
T ss_pred CcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCC-------CceEEEEEccCCccc-----cCCcccc
Confidence 9999999999999999999999999999999877665555443332 333444444321100 0112345
Q ss_pred chhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHH--HHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 174 EYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMS--LNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~--~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
.++++.......... ....++++++++|||||||.||+|++||.++.... ......+++..+|++++..|++|.+++
T Consensus 156 ~~~~l~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 234 (539)
T PRK07008 156 CYETLVGAQDGDYDW-PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAW 234 (539)
T ss_pred cHHHHhcccCCCcCc-ccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhH
Confidence 566665433322211 23567889999999999999999999999986432 233346778889999999999999888
Q ss_pred HHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHH
Q 048242 252 CFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAM 330 (430)
Q Consensus 252 ~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~ 330 (430)
...+.++..|+++++.+ .+++..+++.++++++|++.++|+++..+++.......+ +++||.++++|+++++.+.+++
T Consensus 235 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~ 313 (539)
T PRK07008 235 GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLR-FSTLRRTVIGGSACPPAMIRTF 313 (539)
T ss_pred HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCC-cccceEEEEcCCCCCHHHHHHH
Confidence 77778888999998874 579999999999999999999999999999877665556 8999999999999999999999
Q ss_pred H-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 331 S-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 331 ~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
+ .+++++++.||+||++..++.+...........+.......++|+|++++ +++|+|++ +++++.++++.|||+++|
T Consensus 314 ~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~-~~~i~d~~-~~~~~~~~~~~Gei~v~g 391 (539)
T PRK07008 314 EDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGV-DMKIVGDD-GRELPWDGKAFGDLQVRG 391 (539)
T ss_pred HHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccce-EEEEECCC-CCccCCCCCcceEEEEeC
Confidence 7 67999999999999987665543321111111111122346899999999 99999987 888876543679999999
Q ss_pred CcccccccCCcc
Q 048242 410 NMVMKGYLKNPK 421 (430)
Q Consensus 410 ~~v~~gY~~~~~ 421 (430)
++++.|||++++
T Consensus 392 ~~~~~gy~~~~~ 403 (539)
T PRK07008 392 PWVIDRYFRGDA 403 (539)
T ss_pred CccchhhcCChh
Confidence 999999999874
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=388.17 Aligned_cols=376 Identities=23% Similarity=0.310 Sum_probs=302.6
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..++.+++.+.++.+|+++|+++. ++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 27 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 106 (546)
T PLN02330 27 KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV 106 (546)
T ss_pred CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcE
Confidence 468999999999999999999974 579999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|..+.+++.++++.++++++++++.....+... . ..++.+++... .....|.
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------------~-~~~i~~~~~~~----------~~~~~~~ 163 (546)
T PLN02330 107 FSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------------G-LPVIVLGEEKI----------EGAVNWK 163 (546)
T ss_pred eccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------------C-CcEEEecCCCC----------CCcccHH
Confidence 99999999999999999999999999998766554321 1 22344443211 1224455
Q ss_pred hhhhcCCCCCC--CCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC--CCCCCEEEeccCchhhhhhH
Q 048242 177 KLLETGDPEFA--WKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG--MKEGAVYLWTLPIFHGNGWC 252 (430)
Q Consensus 177 ~~~~~~~~~~~--~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~pl~h~~gl~ 252 (430)
+++........ ......++++++++|||||||.||+|.++|.++..++.......+ ....++++..+|++|.+++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~ 243 (546)
T PLN02330 164 ELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGIT 243 (546)
T ss_pred HHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHH
Confidence 55543322111 112345689999999999999999999999999776553322221 22356789999999999987
Q ss_pred -HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCC--ceeEEeecCCCCCHHHHHH
Q 048242 253 -FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLP--HVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 253 -~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~--~lr~v~~~G~~l~~~~~~~ 329 (430)
..+.++..|+++++.+.+++..+++.++++++|++.++|+++..++........+ ++ ++|.++++|+++++++.++
T Consensus 244 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-~~~~~l~~i~~~g~~l~~~~~~~ 322 (546)
T PLN02330 244 GICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFD-LSKLKLQAIMTAAAPLAPELLTA 322 (546)
T ss_pred HHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccc-cchheeeeEEEcCCcCCHHHHHH
Confidence 4566778899999999999999999999999999999999999999865544444 44 5799999999999999999
Q ss_pred HH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEE
Q 048242 330 MS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVM 407 (430)
Q Consensus 330 ~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v 407 (430)
++ .+ ++++++.||+||++.+...+.... ........+++|+|++++ +++|+|++++++++.| +.|||++
T Consensus 323 ~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~------~~~~~~~~~~vG~~~~~~-~v~i~d~~~~~~~p~g--~~Gel~v 393 (546)
T PLN02330 323 FEAKFPGVQVQEAYGLTEHSCITLTHGDPE------KGHGIAKKNSVGFILPNL-EVKFIDPDTGRSLPKN--TPGELCV 393 (546)
T ss_pred HHHHcCCCeEEecccccccccceecCCCcc------ccccccccCccccccCCc-EEEEEeCCCCccCCCC--CceEEEE
Confidence 98 56 899999999999875543321110 011112346899999999 9999997779999998 8999999
Q ss_pred ecCcccccccCCcccchHhh
Q 048242 408 RGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 408 ~g~~v~~gY~~~~~~t~~~f 427 (430)
+|++++.||+++++.+.+.|
T Consensus 394 ~g~~~~~gy~~~~~~~~~~~ 413 (546)
T PLN02330 394 RSQCVMQGYYNNKEETDRTI 413 (546)
T ss_pred ecchhhhhhccCccchhhhc
Confidence 99999999999999988776
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=387.58 Aligned_cols=372 Identities=21% Similarity=0.275 Sum_probs=303.5
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
..++.+++++.++.+|+++|++.. +..+||+||++++.++|+.|.+.|+++|++|+++++|++++++++|||++
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 100 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACAR 100 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 458999999999999999999862 36899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHH-----HHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA-----LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA 167 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (430)
+|++++|++|.++.+++.++++.++++++++++.... .......... ....++.+++..
T Consensus 101 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------- 164 (538)
T TIGR03208 101 IGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLP-------ALRQVVVIDGDG--------- 164 (538)
T ss_pred cCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCC-------cceEEEEecCCC---------
Confidence 9999999999999999999999999999999876421 1111111111 233455544321
Q ss_pred ccCCccchhhhhhcCCCC--C-----CCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEE
Q 048242 168 LSKGVTEYEKLLETGDPE--F-----AWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL 240 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~ 240 (430)
...+.+.+...... . .......++++++++|||||||.||+|+++|+++...+......++++.+|+++
T Consensus 165 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l 240 (538)
T TIGR03208 165 ----DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVIL 240 (538)
T ss_pred ----CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEE
Confidence 11232222211100 0 011234678999999999999999999999999999888888888899999999
Q ss_pred eccCchhhhhhH-HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecC
Q 048242 241 WTLPIFHGNGWC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGG 319 (430)
Q Consensus 241 ~~~pl~h~~gl~-~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G 319 (430)
+.+|++|..++. .++.++..|+++++.+.+++..+++.++++++|++.++|.++..+.........+ ++++|.++++|
T Consensus 241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~~~~~gG 319 (538)
T TIGR03208 241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAP-VPSLFTFLCAG 319 (538)
T ss_pred EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCC-CCcceEEEEcC
Confidence 999999998876 4777888999999888899999999999999999999999999988765443344 88999999999
Q ss_pred CCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCC
Q 048242 320 SPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPAD 398 (430)
Q Consensus 320 ~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~ 398 (430)
+++++++.+++. .+++++++.||+||+++++..+.... ......++|+|++++ +++|+|++ +++++.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~g~-~v~i~~~~-~~~~~~g 388 (538)
T TIGR03208 320 APIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDA---------LEKASTTDGRPLPGV-EVKVIDAN-GAKLSQG 388 (538)
T ss_pred CCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccc---------hhhccCcccccCCCC-EEEEECCC-CCCCcCC
Confidence 999999999988 67999999999999977655432110 011236789999999 99999987 8999888
Q ss_pred CCceeEEEEecCcccccccCCcccch
Q 048242 399 GKTIGEVVMRGNMVMKGYLKNPKANE 424 (430)
Q Consensus 399 ~~~~Gel~v~g~~v~~gY~~~~~~t~ 424 (430)
+.|||+++|++++.||+++++.+.
T Consensus 389 --~~Gel~v~g~~~~~gy~~~~~~~~ 412 (538)
T TIGR03208 389 --ETGRLLVRGCSNFGGYLKRPHLNS 412 (538)
T ss_pred --CCcEEEEecCcccccccCCccccc
Confidence 899999999999999999998764
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=387.05 Aligned_cols=383 Identities=22% Similarity=0.274 Sum_probs=313.7
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
.++.++.++|.+.++++|+++|+++.+..+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~ 88 (524)
T PRK06188 9 HSGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR 88 (524)
T ss_pred cCCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccc-cHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQ-YFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
++|++|..+.+++.++++.++++.+++++. ............. ....++.++.... ...+
T Consensus 89 ~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------~~~~ 149 (524)
T PRK06188 89 RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVP-------SLKHVLTLGPVPD------------GVDL 149 (524)
T ss_pred EEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcC-------CceEEEEeCCccc------------hhhH
Confidence 999999999999999999999999999876 3333332222111 2334444433210 0011
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
.+..... ..........++++++++|||||||.||+|.++|.++...+......+++..++++++..|++|.+++. .+
T Consensus 150 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~ 227 (524)
T PRK06188 150 LAAAAKF-GPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FL 227 (524)
T ss_pred HHhhhcc-CcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HH
Confidence 1111111 111111223456799999999999999999999999999888888888999999999999999998875 46
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcC
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKG 334 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~ 334 (430)
.+++.|+++++.+.+++..+++.++++++|+++++|+++..++........+ ++++|.+++||++++++..+.+. .++
T Consensus 228 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-l~~lr~~~~gg~~~~~~~~~~~~~~~~ 306 (524)
T PRK06188 228 PTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRD-LSSLETVYYGASPMSPVRLAEAIERFG 306 (524)
T ss_pred HHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCC-CcceeEEEEcCCCCCHHHHHHHHHHhC
Confidence 6788899999999999999999999999999999999999999887666666 89999999999999999888876 678
Q ss_pred cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccc
Q 048242 335 FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMK 414 (430)
Q Consensus 335 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~ 414 (430)
..+++.||+||++..++........ ........++|+|++++ +++|+|++ +++++.| +.|||+++|+.++.
T Consensus 307 ~~~~~~YG~tE~~~~~~~~~~~~~~-----~~~~~~~~~~G~p~~g~-~v~i~~~~-~~~~~~g--~~Gel~v~~~~~~~ 377 (524)
T PRK06188 307 PIFAQYYGQTEAPMVITYLRKRDHD-----PDDPKRLTSCGRPTPGL-RVALLDED-GREVAQG--EVGEICVRGPLVMD 377 (524)
T ss_pred chhhheeCccccCCceeecCchhcc-----ccccccCCccccccCCc-EEEEEcCC-CCCCCCC--CeeEEEEECcchhh
Confidence 8899999999997666554332110 01123457899999999 89999988 9999988 89999999999999
Q ss_pred cccCCcccchHhhhCC
Q 048242 415 GYLKNPKANEEAFANG 430 (430)
Q Consensus 415 gY~~~~~~t~~~f~dg 430 (430)
||+++++.+...|.+|
T Consensus 378 gy~~~~~~~~~~~~~g 393 (524)
T PRK06188 378 GYWNRPEETAEAFRDG 393 (524)
T ss_pred hhcCChHHhhhhhcCC
Confidence 9999999998887654
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=383.73 Aligned_cols=359 Identities=14% Similarity=0.185 Sum_probs=297.5
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
+++.+.|.+.++++|+++|+++.+.++||.||.++++++|+.|.+.|. +|++|+|+++|++++++++|||+++|++++|
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP 79 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 367889999999999999999999999999999999999999999884 8999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhh
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL 179 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
++|.++.+++.++++.+++++++++......+.. ....++.+++ +.+..
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-------------~~~~~~~~~~------------------~~~~~ 128 (487)
T PRK07638 80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPD-------------EEGRVIEIDE------------------WKRMI 128 (487)
T ss_pred cCccCCHHHHHHHHHhCCCCEEEEecccccchhh-------------ccceEEEehh------------------hhhhh
Confidence 9999999999999999999999998754432221 1112222221 11111
Q ss_pred hcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHh
Q 048242 180 ETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~ 259 (430)
....+.. .......+++++|+|||||||.||+|+++|.++...+......++++.+|+++...|++|..++...+.++.
T Consensus 129 ~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~ 207 (487)
T PRK07638 129 EKYLPTY-APIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLY 207 (487)
T ss_pred hhccccc-cccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHc
Confidence 1111111 111223567899999999999999999999999888888888888999999999999999988888888899
Q ss_pred hcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-CcEE
Q 048242 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK-GFRV 337 (430)
Q Consensus 260 ~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~-~~~v 337 (430)
.|+++++.+.+++..+++.++++++|+++++|+++..+.+.... ..+.+.++++|+++++++.++++ .+ ++++
T Consensus 208 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 282 (487)
T PRK07638 208 VGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRV-----IENKMKIISSGAKWEAEAKEKIKNIFPYAKL 282 (487)
T ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcCc-----CCceeEEEEcCCCCCHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999999999999999999987321 34556677889999999999998 55 7899
Q ss_pred EeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccccccc
Q 048242 338 THVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYL 417 (430)
Q Consensus 338 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~ 417 (430)
++.||+||++..+..+... .....+++|+|++++ +++|+|++ |++++.| +.|||+++|+.++.|||
T Consensus 283 ~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~Gel~v~~~~~~~gy~ 348 (487)
T PRK07638 283 YEFYGASELSFVTALVDEE----------SERRPNSVGRPFHNV-QVRICNEA-GEEVQKG--EIGTVYVKSPQFFMGYI 348 (487)
T ss_pred EEEecCCccCceEEecccc----------cCCCCCCCCcccCCc-EEEEECCC-CCCCCCC--CCeEEEEecccceeeec
Confidence 9999999998665543211 122447899999999 99999987 9999988 89999999999999999
Q ss_pred CCcccchHhhhCC
Q 048242 418 KNPKANEEAFANG 430 (430)
Q Consensus 418 ~~~~~t~~~f~dg 430 (430)
++++.+.+.+.||
T Consensus 349 ~~~~~~~~~~~~g 361 (487)
T PRK07638 349 IGGVLARELNADG 361 (487)
T ss_pred CCHHHHhhhccCC
Confidence 9998877655443
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-49 Score=395.45 Aligned_cols=378 Identities=21% Similarity=0.259 Sum_probs=293.3
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHH
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
+..++.++++++++.+|+++|+++.+ +.+||+||.++++++|+.|.+. +++||+|+++++|++++++++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~l 110 (612)
T PRK12476 32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFF 110 (612)
T ss_pred ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHH
Confidence 44689999999999999999998632 4899999999999999999986 9999999999999999999999
Q ss_pred HhhhcCCeeeec-cccCC--hhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccc
Q 048242 89 GVPMTGAVLNCI-NFRLN--PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165 (430)
Q Consensus 89 A~~~~G~~~~~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (430)
||+++|++++|+ ++.++ .+++.++++.+++++++++.+....+.......... ....++.+++...
T Consensus 111 A~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~------ 179 (612)
T PRK12476 111 AAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRL-----RRPRVIAIDAIPD------ 179 (612)
T ss_pred HHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccc-----cCceEEEeccccc------
Confidence 999999999999 57766 789999999999999999887665544432221100 1123444432110
Q ss_pred ccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC-CCCCCEEEeccC
Q 048242 166 YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG-MKEGAVYLWTLP 244 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~p 244 (430)
..... .......++++++|+|||||||.||||+++|+++.+++......++ +..++++++++|
T Consensus 180 ---------------~~~~~-~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~P 243 (612)
T PRK12476 180 ---------------SAGES-FVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLP 243 (612)
T ss_pred ---------------ccccc-ccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCC
Confidence 00000 0112345689999999999999999999999999887777666677 788899999999
Q ss_pred chhhhhhHHHHHHHhhcceEEEeCC--C--CHHHHHHHHH--hhCceEEeeccHHHHHHHcCCC----CCCCCCCCceeE
Q 048242 245 IFHGNGWCFTWSLAALCGTSVMLRQ--A--SAKAIYKAIA--EHGVTNFCAAPIVLNSIVNAPP----EDTILPLPHVVN 314 (430)
Q Consensus 245 l~h~~gl~~~~~~l~~g~~~v~~~~--~--~~~~~~~~l~--~~~vt~~~~~p~~l~~l~~~~~----~~~~~~l~~lr~ 314 (430)
++|.+|+...+.+++.|++++++.. + ++..+++.+. ++++++++.+|.++..+..... ....+ +++||
T Consensus 244 l~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~-l~~lr- 321 (612)
T PRK12476 244 LYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDID-LSNVV- 321 (612)
T ss_pred cccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcc-hhHhe-
Confidence 9999999877777777887777753 3 8899999995 5899999999999888776421 12334 88999
Q ss_pred EeecCCCCCHHHHHHHHh-c---Cc---EEEeeecCccccccccccccCCCCC--CCCh--------------hhhhhhc
Q 048242 315 VNTGGSPPPPPILLAMSQ-K---GF---RVTHVYGLSEINGPATVCAWNPNWD--SLPF--------------EAQARLN 371 (430)
Q Consensus 315 v~~~G~~l~~~~~~~~~~-~---~~---~v~~~YG~tE~~~~~~~~~~~~~~~--~~~~--------------~~~~~~~ 371 (430)
+++||+++++++.+++++ + |+ .+++.||+||+++.++......... .... .......
T Consensus 322 ~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 401 (612)
T PRK12476 322 LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAH 401 (612)
T ss_pred EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCccee
Confidence 999999999999999984 4 44 4899999999876554322110000 0000 0001123
Q ss_pred cccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 372 ARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 372 ~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
+++|+|++++ +++|+|++++++++.| +.|||+++|++++.|||++++.|+++|.
T Consensus 402 ~~~G~~~~g~-~v~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 455 (612)
T PRK12476 402 VSCGQVARSQ-WAVIVDPDTGAELPDG--EVGEIWLHGDNIGRGYWGRPEETERTFG 455 (612)
T ss_pred EeCCCcCCCC-EEEEEeCCCCcCCCCC--CEEEEEEcCCcccccccCChHHHHHHHh
Confidence 5899999999 9999998879999998 8999999999999999999999999884
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=428.29 Aligned_cols=369 Identities=18% Similarity=0.203 Sum_probs=308.3
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
..+..++.++|.+.++.+|+++|+++.++.+||+||.++++++|+.|.+.|+++|++|++++++++++++++|||+++|+
T Consensus 454 ~~~~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~ 533 (1296)
T PRK10252 454 EIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGA 533 (1296)
T ss_pred CCCcCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++|.++.+++.++++.+++++++++.+....+... ....+..++..
T Consensus 534 ~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~------------~~~~~~~~~~~------------------ 583 (1296)
T PRK10252 534 AWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV------------PDLTSLCYNAP------------------ 583 (1296)
T ss_pred EEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC------------CCceeeecccc------------------
Confidence 999999999999999999999999999987654322110 00011111110
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
... ..........++++++|+|||||||+||||+++|+++.+.+.+....++++.+|++++..|++|..++..++
T Consensus 584 ---~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 658 (1296)
T PRK10252 584 ---LAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFF 658 (1296)
T ss_pred ---ccc--ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHH
Confidence 000 000011123578999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHhhcceEEEeC---CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCC--CCCCCceeEEeecCCCCCHHHHHHH
Q 048242 256 SLAALCGTSVMLR---QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT--ILPLPHVVNVNTGGSPPPPPILLAM 330 (430)
Q Consensus 256 ~~l~~g~~~v~~~---~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~--~~~l~~lr~v~~~G~~l~~~~~~~~ 330 (430)
.++..|+++++.+ ..++..+++.++++++|++.++|+++..++....... .. +++||.+++||+++++++.++|
T Consensus 659 ~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~-~~~lr~i~~gGe~l~~~~~~~~ 737 (1296)
T PRK10252 659 WPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQS-CASLRQVFCSGEALPADLCREW 737 (1296)
T ss_pred HHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccccc-CCCccEEEEecCCCCHHHHHHH
Confidence 9999999999985 3689999999999999999999999999887643322 23 6899999999999999999999
Q ss_pred Hh-cCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 331 SQ-KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 331 ~~-~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
++ +++++++.||+||++..++.+....... ........++|+|++++ +++|+|++ +++++.| +.|||+|+|
T Consensus 738 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~----~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~~~g--~~Gel~i~g 809 (1296)
T PRK10252 738 QQLTGAPLHNLYGPTEAAVDVSWYPAFGEEL----AAVRGSSVPIGYPVWNT-GLRILDAR-MRPVPPG--VAGDLYLTG 809 (1296)
T ss_pred HhcCCCEEEeCCCcchhhheeeeeecccccc----cccCCCCCCcccccCCC-EEEEECCC-CCCCCCC--CceEEEecc
Confidence 85 5899999999999987666543321100 00012346799999999 89999987 9999998 899999999
Q ss_pred CcccccccCCcccchHhhh
Q 048242 410 NMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f~ 428 (430)
+++++||++++++|.++|.
T Consensus 810 ~~~~~GY~~~~~~t~~~f~ 828 (1296)
T PRK10252 810 IQLAQGYLGRPDLTASRFI 828 (1296)
T ss_pred cccchhhCCCcccchhhcc
Confidence 9999999999999999984
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=381.47 Aligned_cols=369 Identities=27% Similarity=0.373 Sum_probs=305.1
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
.++.+.|++.++.+|+++|+++.++.+||.||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP 81 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhh
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL 179 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
+++..+.+++.++++.+++++++++.+...... .....+.++.... ..+..+
T Consensus 82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~-------------~~~~~~- 133 (497)
T PRK06145 82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVA--------------LETPKIVIDAAAQ-------------ADSRRL- 133 (497)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEccchhhhhh--------------cccceEEecCccc-------------chhHHH-
Confidence 999999999999999999999999876533211 0111222221100 001111
Q ss_pred hcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HHHHH
Q 048242 180 ETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TWSLA 258 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~~~l 258 (430)
..............++++++++|||||||.||+|+++|+++...+......+++..+++++...|++|.+++.. .+..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 213 (497)
T PRK06145 134 AQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVL 213 (497)
T ss_pred hccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHH
Confidence 10101111112346789999999999999999999999999877666667778899999999999999999874 46677
Q ss_pred hhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-CcE
Q 048242 259 ALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK-GFR 336 (430)
Q Consensus 259 ~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~-~~~ 336 (430)
..|+++++.+.+++..+++.++++++|+++++|+++..++........+ ++++|.++.||++++.++.++++ .+ +.+
T Consensus 214 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~ 292 (497)
T PRK06145 214 WVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFD-LDSLAWCIGGGEKTPESRIRDFTRVFTRAR 292 (497)
T ss_pred hccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccc-cccceEEEecCCCCCHHHHHHHHHHcCCCc
Confidence 8899999988899999999999999999999999999999876655555 88999999999999999999998 55 688
Q ss_pred EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccc
Q 048242 337 VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGY 416 (430)
Q Consensus 337 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY 416 (430)
+++.||+||+++.++....+.. ....+++|+|++++ +++|+|++ ++.++.+ +.|||+++|++++.||
T Consensus 293 v~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~-~~~i~~~~-~~~~~~~--~~Gel~v~g~~~~~Gy 359 (497)
T PRK06145 293 YIDAYGLTETCSGDTLMEAGRE---------IEKIGSTGRALAHV-EIRIADGA-GRWLPPN--MKGEICMRGPKVTKGY 359 (497)
T ss_pred eEEeecCcccCCcceeccCccc---------cccCCCcccCCCCc-eEEEECCC-CCCCCCC--CceEEEEECcchhhhh
Confidence 9999999999876554332211 12346899999999 99999987 8999888 8999999999999999
Q ss_pred cCCcccchHhhhCC
Q 048242 417 LKNPKANEEAFANG 430 (430)
Q Consensus 417 ~~~~~~t~~~f~dg 430 (430)
+++++.+.+.|.+|
T Consensus 360 ~~~~~~~~~~~~~~ 373 (497)
T PRK06145 360 WKDPEKTAEAFYGD 373 (497)
T ss_pred cCChHHHHHHHhCC
Confidence 99999999887553
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=393.58 Aligned_cols=384 Identities=17% Similarity=0.206 Sum_probs=298.0
Q ss_pred HHHHHHHHHhhCCCcceEEEC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 22 PLWFLERAATVHPTRKSVVYE------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 22 ~~~~l~~~~~~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
..++|+++++.+|+++|+++. .+++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 367788888889999999972 36899999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEecccc---------HHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccc
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQY---------FALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEY 166 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (430)
+++|++|.++.+++.++++.++++++|+++.. ...+.++..... .....++.++.......
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~vi~~~~~~~~~~---- 204 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQ------HKPRHVLLVDRGLAPMA---- 204 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcC------CCCCEEEEEeCCCCCcC----
Confidence 99999999999999999999999999997642 223333322221 02345555543211000
Q ss_pred cccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHH-HHHHhhcCCCCCCEEEeccCc
Q 048242 167 ALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMS-LNVVLTWGMKEGAVYLWTLPI 245 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~-~~~~~~~~~~~~~~~~~~~pl 245 (430)
........+.++...............++++++|+|||||||.||||+++|.++.... ......+++..+|++++..|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 284 (629)
T PRK10524 205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDI 284 (629)
T ss_pred cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCC
Confidence 0111123455544332221111123457899999999999999999999999875443 344455678899999999999
Q ss_pred hhhhhhH-HHHHHHhhcceEEEeC----CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeec
Q 048242 246 FHGNGWC-FTWSLAALCGTSVMLR----QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTG 318 (430)
Q Consensus 246 ~h~~gl~-~~~~~l~~g~~~v~~~----~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~ 318 (430)
.|..+.. .++.+++.|+++++.+ .+++..+++.|+++++|+++++|++++.+.+.... ...+ +++||.++++
T Consensus 285 ~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~~ 363 (629)
T PRK10524 285 GWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHD-LSSLRALFLA 363 (629)
T ss_pred CeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccC-hhheeEEEEe
Confidence 9988865 5777888999998885 35789999999999999999999999998875432 2334 8899999999
Q ss_pred CCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCC
Q 048242 319 GSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPA 397 (430)
Q Consensus 319 G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~ 397 (430)
|+++++++.++++ .+++++++.||+||+++.+....... .....+.+++|+|++++ +++|+|+++|++++.
T Consensus 364 Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~~G~p~~g~-~~~i~d~~~g~~~~~ 435 (629)
T PRK10524 364 GEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGV-------EDRPTRLGSPGVPMYGY-NVKLLNEVTGEPCGP 435 (629)
T ss_pred CCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCc-------ccCcCCCCCcccCcCCc-eEEEEeCCCCCCCCC
Confidence 9999999999998 57999999999999974433222110 00112357899999999 999999945999998
Q ss_pred CCCceeEEEEecC---cccccccCCcccchHh
Q 048242 398 DGKTIGEVVMRGN---MVMKGYLKNPKANEEA 426 (430)
Q Consensus 398 ~~~~~Gel~v~g~---~v~~gY~~~~~~t~~~ 426 (430)
| +.|||+++|| +++.|||++++.+.+.
T Consensus 436 g--~~Gel~i~gp~~~~~~~~~~~~~~~~~~~ 465 (629)
T PRK10524 436 N--EKGVLVIEGPLPPGCMQTVWGDDDRFVKT 465 (629)
T ss_pred C--CcEEEEEcCCCChhhcCCccCChHHHHHh
Confidence 8 8999999998 6889999999877654
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=386.77 Aligned_cols=392 Identities=21% Similarity=0.222 Sum_probs=306.7
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.....++.++|.+.++.+|+++|++..++++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 85 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCc
Confidence 44455899999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHH-HHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccc
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA-LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTE 174 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (430)
+++|++|..+.+++.++++.+++++++++++... .+......... ........++.+++...... ......
T Consensus 86 ~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~ 157 (540)
T PRK06164 86 TVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPP--DALPPLRAIAVVDDAADATP------APAPGA 157 (540)
T ss_pred EEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccc--cccCCcceEEEeccCcccCC------CCCccc
Confidence 9999999999999999999999999999876421 11111111000 00012234444442110000 000001
Q ss_pred hhhhhhcCCC---CCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 175 YEKLLETGDP---EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 175 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
+.+....... .........++++++++|||||||.||+|+++|.++...+......+++..++++++.+|++|.+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~ 237 (540)
T PRK06164 158 RVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGF 237 (540)
T ss_pred ccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHH
Confidence 1111111100 0001123356889999999999999999999999999988888888899999999999999999999
Q ss_pred HHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecC-CCCCHHHHHHH
Q 048242 252 CFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGG-SPPPPPILLAM 330 (430)
Q Consensus 252 ~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G-~~l~~~~~~~~ 330 (430)
..++.++..|+++++.+.+++..+++.|+++++|+++++|++++.+.+.. ....+ ++++|.+..+| .+...++.+++
T Consensus 238 ~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 315 (540)
T PRK06164 238 STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERAD-FPSARLFGFASFAPALGELAALA 315 (540)
T ss_pred HHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCC-CcceeeeeeccCCcchHHHHHHH
Confidence 98888999999999998899999999999999999999999999998873 23334 88999887765 55566777777
Q ss_pred HhcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCcc-ccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 331 SQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC-MCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 331 ~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~-~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
.+.++++++.||+||+++.++.+..... ......+.|.+. +++ +++|+|++++++++.| +.|||+++|
T Consensus 316 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~-~~~i~d~~~~~~~~~g--~~Gel~v~g 384 (540)
T PRK06164 316 RARGVPLTGLYGSSEVQALVALQPATDP--------VSVRIEGGGRPASPEA-RVRARDPQDGALLPDG--ESGEIEIRA 384 (540)
T ss_pred hhcCCceecceeeccccceeeccCCCCC--------CcceeccCccccCCCe-EEEEecCCCCcCCCCC--CeeEEEEec
Confidence 7669999999999999876665432211 112235678876 788 8999998889999988 899999999
Q ss_pred CcccccccCCcccchHhhh
Q 048242 410 NMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f~ 428 (430)
++++.|||+++++|.+.|.
T Consensus 385 ~~~~~gY~~~~~~t~~~~~ 403 (540)
T PRK06164 385 PSLMRGYLDNPDATARALT 403 (540)
T ss_pred ccccccccCCchhhhhccc
Confidence 9999999999999998884
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-49 Score=423.15 Aligned_cols=394 Identities=19% Similarity=0.229 Sum_probs=314.7
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEEC-CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYE-SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
....++.+.+++.++++|+++|+++. ++++||+||.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|+
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 690 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGK 690 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCC
Confidence 34567999999999999999999974 5899999999999999999987 489999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++|..+.+++.++++++++++++++++..+.+.+.... ........++..++..... .....+
T Consensus 691 v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~~~~~ 757 (1146)
T PRK08633 691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFD-----LELPENVKVIYLEDLKAKI--------SKVDKL 757 (1146)
T ss_pred EEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCc-----hhcccCceEEEeehhcccc--------chhHHH
Confidence 999999999999999999999999999987655543321000 0001223444444321100 001112
Q ss_pred hhhhhcCC-CC----CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhh
Q 048242 176 EKLLETGD-PE----FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 176 ~~~~~~~~-~~----~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~g 250 (430)
.+...... +. ........++|+++++|||||||.||+|.++|+++...+......++...+|++++.+|++|.+|
T Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g 837 (1146)
T PRK08633 758 TALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFG 837 (1146)
T ss_pred HHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHh
Confidence 22111110 10 00012456789999999999999999999999999998888888888999999999999999999
Q ss_pred hHH-HHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHH
Q 048242 251 WCF-TWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILL 328 (430)
Q Consensus 251 l~~-~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~ 328 (430)
+.. .+.++..|+++++.+ .+++..+++.++++++|++.++|++++.+.+.......+ ++++|.+++||+++++++.+
T Consensus 838 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~~~~~~~~ 916 (1146)
T PRK08633 838 LTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLM-FASLRLVVAGAEKLKPEVAD 916 (1146)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCccc-CCCeeeEEEcCCcCCHHHHH
Confidence 885 778888999988876 478999999999999999999999999998876555555 89999999999999999999
Q ss_pred HHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEE
Q 048242 329 AMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVM 407 (430)
Q Consensus 329 ~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v 407 (430)
+++ .+|+++++.||+||+++.++.+.......... .....+.+++|+|+|++ +++|+|++++++++.| +.|||++
T Consensus 917 ~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~-~~~~~~~~~vG~p~~~~-~v~i~d~~~~~~~~~g--~~Gel~v 992 (1146)
T PRK08633 917 AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK-RQTGSKEGSVGMPLPGV-AVRIVDPETFEELPPG--EDGLILI 992 (1146)
T ss_pred HHHHHhCCCeecccccccCcceEEEecCcccccccc-cccCCCCCCccccCCCC-EEEEEcCCCCccCCCC--CceEEEE
Confidence 998 67999999999999987766543221100000 11123457899999999 9999998879999998 8999999
Q ss_pred ecCcccccccCCcccchHhhhC
Q 048242 408 RGNMVMKGYLKNPKANEEAFAN 429 (430)
Q Consensus 408 ~g~~v~~gY~~~~~~t~~~f~d 429 (430)
+|++++.||+++++.|.+.|.|
T Consensus 993 ~g~~~~~gY~~~~~~t~~~~~~ 1014 (1146)
T PRK08633 993 GGPQVMKGYLGDPEKTAEVIKD 1014 (1146)
T ss_pred cCCCccccccCCccchHHHhhc
Confidence 9999999999999999988865
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=428.34 Aligned_cols=390 Identities=18% Similarity=0.168 Sum_probs=301.1
Q ss_pred CCHHHHHHHHHhhCCCcceEEE---------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHh
Q 048242 20 LTPLWFLERAATVHPTRKSVVY---------ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGV 90 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~---------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 90 (430)
.++.++|+++++.+|+++|+++ .++++||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~ 315 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV 315 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 5799999999999999999986 3478999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccH---HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccc
Q 048242 91 PMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYF---ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA 167 (430)
Q Consensus 91 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (430)
+++|++++|++|.++.+++.++++.+++++++++.... ..+......... .......+...++....
T Consensus 316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------- 385 (1389)
T TIGR03443 316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELE---LRTEIPALALQDDGSLV------- 385 (1389)
T ss_pred HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccc---cccccceEEeccccccc-------
Confidence 99999999999999999999999999999999876421 111111110000 00011111111110000
Q ss_pred ccCCccc--hhhhhhcCC--CCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEecc
Q 048242 168 LSKGVTE--YEKLLETGD--PEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTL 243 (430)
Q Consensus 168 ~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 243 (430)
.+... ..+.+.... ..........++++++|+|||||||.||||+++|+++.+.+.+....+++..+|+++...
T Consensus 386 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~ 463 (1389)
T TIGR03443 386 --GGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLS 463 (1389)
T ss_pred --ccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence 00000 000010000 000111234578999999999999999999999999999998888889999999999999
Q ss_pred CchhhhhhHHHHHHHhhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCC
Q 048242 244 PIFHGNGWCFTWSLAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGS 320 (430)
Q Consensus 244 pl~h~~gl~~~~~~l~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~ 320 (430)
|++|..++..++.+++.|+++++.+. .++..+++.|+++++|+++++|++++.+..... .. +++||.+++||+
T Consensus 464 ~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~-~~~lr~~~~gGe 539 (1389)
T TIGR03443 464 GIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---TP-IPSLHHAFFVGD 539 (1389)
T ss_pred CceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---cc-CCCccEEEEecc
Confidence 99999999889999999999988854 368899999999999999999999999875432 23 889999999999
Q ss_pred CCCHHHHHHHHhc--CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCC-CCCCCCC
Q 048242 321 PPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTK-TNQPIPA 397 (430)
Q Consensus 321 ~l~~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~-~~~~~~~ 397 (430)
++++...+++++. ++++++.||+||++..++.....................++|+|++++ +++|+|++ .+++++.
T Consensus 540 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~ivd~~~~~~~~~~ 618 (1389)
T TIGR03443 540 ILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNV-QLLVVNRNDRTQTCGV 618 (1389)
T ss_pred cCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCC-EEEEECCccCCCcCCC
Confidence 9999999998854 799999999999987666543221100000000112346799999999 99999975 3578888
Q ss_pred CCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 398 DGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 398 ~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
| ++|||+|+|+++++||||+|++|+++|.
T Consensus 619 G--~~GEL~i~G~~v~~GY~~~p~~t~~~f~ 647 (1389)
T TIGR03443 619 G--EVGEIYVRAGGLAEGYLGLPELNAEKFV 647 (1389)
T ss_pred C--CceEEEecccccchhcCCChhHhhhhcc
Confidence 8 8999999999999999999999999983
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=380.67 Aligned_cols=379 Identities=22% Similarity=0.327 Sum_probs=305.0
Q ss_pred CCHHHHHHHHHhhCCCcceEEECC-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcC
Q 048242 20 LTPLWFLERAATVHPTRKSVVYES-----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTG 94 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 94 (430)
.++.++|++.++++|+++|+++.+ +.+||+||.++++++|+.|.++|+++||+|+++++|+.++++++|||+++|
T Consensus 7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G 86 (517)
T PRK08008 7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG 86 (517)
T ss_pred ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 579999999999999999999864 789999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccc
Q 048242 95 AVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTE 174 (430)
Q Consensus 95 ~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (430)
+++++++|..+.+++.++++.++++.++++.+....+.++..... .....++..+.... ...+...
T Consensus 87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~--------~~~~~~~ 152 (517)
T PRK08008 87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDA------TPLRHICLTRVALP--------ADDGVSS 152 (517)
T ss_pred eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcc------ccCcEEEEecCCCc--------ccccccC
Confidence 999999999999999999999999999999877665555433221 02334444433211 1122344
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH-H
Q 048242 175 YEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-F 253 (430)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~-~ 253 (430)
+.+................++++++++|||||||.||+|+++|.++............+..++++++.+|++|..+.. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (517)
T PRK08008 153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA 232 (517)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHH
Confidence 544433322211122344678999999999999999999999999976544333344577899999999999987666 4
Q ss_pred HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-h
Q 048242 254 TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-Q 332 (430)
Q Consensus 254 ~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~ 332 (430)
++.++..|+++++.+++++..+++.++++++|++.++|.+++.+.......... ..+++.++++ .+++++....+. .
T Consensus 233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~ 310 (517)
T PRK08008 233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDR-QHCLREVMFY-LNLSDQEKDAFEER 310 (517)
T ss_pred HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccc-cccceeeEEe-cCCCHHHHHHHHHH
Confidence 666777899999998899999999999999999999999999998765544333 5678887775 478888888887 6
Q ss_pred cCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec---
Q 048242 333 KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG--- 409 (430)
Q Consensus 333 ~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g--- 409 (430)
+++++++.||+||+++.++.....+ .....++|+|++++ +++|+|++ +++++.| +.|||+++|
T Consensus 311 ~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~g~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~ 376 (517)
T PRK08008 311 FGVRLLTSYGMTETIVGIIGDRPGD----------KRRWPSIGRPGFCY-EAEIRDDH-NRPLPAG--EIGEICIKGVPG 376 (517)
T ss_pred hCCeEEeeccccccccccccCCccc----------cccCCccccCCCCc-EEEEECCC-CCCCCCC--CcceEEEeCCCC
Confidence 6999999999999976555433211 12347899999999 99999987 9999988 899999998
Q ss_pred CcccccccCCcccchHhhh
Q 048242 410 NMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f~ 428 (430)
++++.|||++++.+.+.|.
T Consensus 377 ~~~~~gy~~~~~~~~~~~~ 395 (517)
T PRK08008 377 KTIFKEYYLDPKATAKVLE 395 (517)
T ss_pred cchhhhHhCChHHHhhccc
Confidence 6899999999999988873
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=382.37 Aligned_cols=388 Identities=27% Similarity=0.408 Sum_probs=309.3
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEE--CC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVY--ES--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~--~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
..++++.++|++.++.+|+++++.. .+ +++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~ 86 (542)
T PRK06018 7 DWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMG 86 (542)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHh
Confidence 3467999999999999999999985 23 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
+|++++|++|.++.+++.++++.++++.++++.+....+.+...... ....++...+...... ......
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~~~ 155 (542)
T PRK06018 87 IGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLP-------SVERYVVLTDAAHMPQ----TTLKNA 155 (542)
T ss_pred cCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCC-------CccEEEEecccccccc----cCcccc
Confidence 99999999999999999999999999999999887776665544333 3344554433211000 011123
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHH-H-HHHHHHhhcCCCCCCEEEeccCchhhhh
Q 048242 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAY-L-MSLNVVLTWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~-~-~~~~~~~~~~~~~~~~~~~~~pl~h~~g 250 (430)
..+.+++........ .....++++++|+|||||||.||+|.+||++.+ . ........+++..+|+++...|++|.++
T Consensus 156 ~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~ 234 (542)
T PRK06018 156 VAYEEWIAEADGDFA-WKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANS 234 (542)
T ss_pred ccHHHHhccCCcccC-cccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhh
Confidence 355555544332221 123466789999999999999999999999742 2 2233445667889999999999999999
Q ss_pred hHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 251 WCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 251 l~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
+...+.++..|+++++.. .+++..+++.++++++|+++++|++++.+.+.......+ +++||.++.+|+++++++.++
T Consensus 235 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~ 313 (542)
T PRK06018 235 WGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLK-LPHLKMVVCGGSAMPRSMIKA 313 (542)
T ss_pred hHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCC-cccceEEEEcCCCCCHHHHHH
Confidence 887778888899888764 578899999999999999999999999998876555555 889999999999999999999
Q ss_pred HHhcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 330 MSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 330 ~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
|+++++++++.||+||++.+++.+...+.......+.......++|+|.+++ +++|+|++ ++.++.+++..|||+++|
T Consensus 314 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~-~i~v~d~~-~~~~~~~~~~~Gel~i~g 391 (542)
T PRK06018 314 FEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV-EMKITDDA-GKELPWDGKTFGRLKVRG 391 (542)
T ss_pred HHHhCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCc-EEEEECCC-CCCCCCCCCceeEEEEec
Confidence 9888999999999999987766554332222111122222346799999999 89999987 888886544689999999
Q ss_pred CcccccccCC
Q 048242 410 NMVMKGYLKN 419 (430)
Q Consensus 410 ~~v~~gY~~~ 419 (430)
++++.|||++
T Consensus 392 ~~~~~gy~~~ 401 (542)
T PRK06018 392 PAVAAAYYRV 401 (542)
T ss_pred CCcchhhhcC
Confidence 9999999984
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=385.72 Aligned_cols=387 Identities=19% Similarity=0.227 Sum_probs=300.9
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQL-SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
..++.++|.++++.+|+++|+++.++.+||.||.++++++|+.|.+. |+++||+|+++++|++++++++|||+++|+++
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 102 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIV 102 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 35899999999999999999999889999999999999999999985 99999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEec--CCCCC-------------CC
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIG--DETCD-------------RA 162 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~-------------~~ 162 (430)
+|++|..+.+++.++++.++++++++++............. ....++... +.... ..
T Consensus 103 v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (562)
T PRK12492 103 VNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT--------GIEYLIEAKMGDLLPAAKGWLVNTVVDKVKK 174 (562)
T ss_pred eccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc--------CceEEEeechhhccccccchhcccccccccc
Confidence 99999999999999999999999999876544433322110 111111110 00000 00
Q ss_pred cccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC---------C
Q 048242 163 PLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG---------M 233 (430)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~---------~ 233 (430)
............|.+.+...............+++++|+|||||||.||+|+++|+++...+......+. +
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (562)
T PRK12492 175 MVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLM 254 (562)
T ss_pred cccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccc
Confidence 0000001122345555443322211123456789999999999999999999999999777665544332 2
Q ss_pred CC-CCEEEeccCchhhhhhHH-HHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCC
Q 048242 234 KE-GAVYLWTLPIFHGNGWCF-TWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLP 310 (430)
Q Consensus 234 ~~-~~~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~ 310 (430)
.. ++++++.+|++|.+++.. .+..+..|+..++.. .+++..+++.++++++|+++.+|+++..+.........+ ++
T Consensus 255 ~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~ 333 (562)
T PRK12492 255 KEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLD-FS 333 (562)
T ss_pred cCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccccc-cc
Confidence 22 457789999999999875 444456677666653 568999999999999999999999999999876655555 88
Q ss_pred ceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeC
Q 048242 311 HVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDT 389 (430)
Q Consensus 311 ~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~ 389 (430)
++|.+++||+++++++.++++ .+++++++.||+||+++.++.+.... ..+.+++|+|++++ +++|+|+
T Consensus 334 ~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~p~~~~-~v~ivd~ 402 (562)
T PRK12492 334 ALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGE----------LARLGTVGIPVPGT-ALKVIDD 402 (562)
T ss_pred ceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcc----------cccCCccceecCCC-EEEEECC
Confidence 999999999999999999998 56999999999999987665443211 12347899999999 9999998
Q ss_pred CCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 390 KTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 390 ~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
+ +++++.| +.|||+++|++++.|||++++.+.+.|.
T Consensus 403 ~-~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~ 438 (562)
T PRK12492 403 D-GNELPLG--ERGELCIKGPQVMKGYWQQPEATAEALD 438 (562)
T ss_pred C-CCCCCCC--CceEEEEeCCccccccccCchhhhhccc
Confidence 7 8999988 8999999999999999999999988873
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=379.09 Aligned_cols=369 Identities=22% Similarity=0.300 Sum_probs=306.2
Q ss_pred CCHHHHHHHHHhhCCCcceEEE-CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVY-ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
.++.+++.+.+ .+|++.|+.+ .++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v 81 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFL 81 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEE
Confidence 47889998888 9999999988 567999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|+++..+..++..+++.++++++++++.....+....... ....++.++.... ..+.+.
T Consensus 82 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-------------~~~~~~ 140 (504)
T PRK07514 82 PLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA--------GAPHVETLDADGT-------------GSLLEA 140 (504)
T ss_pred ECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc--------CCceEEEecCCCc-------------ccHHHh
Confidence 9999999999999999999999999987665554432221 2222444433211 111111
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TWSL 257 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~~~ 257 (430)
....... .......++++++++|||||||.||+|.++|.++...+......+++..+|++++.+|++|..++.. .+.+
T Consensus 141 ~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~ 219 (504)
T PRK07514 141 AAAAPDD-FETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVA 219 (504)
T ss_pred hhhcCcc-cCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHH
Confidence 1111111 1123456789999999999999999999999999988888888888999999999999999999874 6677
Q ss_pred HhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcE
Q 048242 258 AALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFR 336 (430)
Q Consensus 258 l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~ 336 (430)
+..|+++++.+.+++..+++.+ .++|++.++|.++..++......... ++++|.++.||+++++++.+.++ .++.+
T Consensus 220 l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~~~~~~~~~~~~~~~~~ 296 (504)
T PRK07514 220 LLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREA-AAHMRLFISGSAPLLAETHREFQERTGHA 296 (504)
T ss_pred HhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCccc-ccceeeEEecCCCCCHHHHHHHHHHhCCc
Confidence 8889999999889999999999 47999999999999999876555555 88999999999999999999998 56899
Q ss_pred EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccc
Q 048242 337 VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGY 416 (430)
Q Consensus 337 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY 416 (430)
+++.||+||++..+.... . ......++|+|++++ +++|+|++++++++.| +.|||+++|++++.||
T Consensus 297 ~~~~YG~tE~~~~~~~~~-~----------~~~~~~~~G~~~~~~-~v~i~d~~~~~~~~~g--~~Gel~i~~~~~~~gy 362 (504)
T PRK07514 297 ILERYGMTETNMNTSNPY-D----------GERRAGTVGFPLPGV-SLRVTDPETGAELPPG--EIGMIEVKGPNVFKGY 362 (504)
T ss_pred ceeecccccccccccCCc-c----------ccccCcccccCCCCc-EEEEEECCCCCCCCCC--CceEEEEecCCccccc
Confidence 999999999875443211 1 112347899999999 9999997779999988 8999999999999999
Q ss_pred cCCcccchHhhh
Q 048242 417 LKNPKANEEAFA 428 (430)
Q Consensus 417 ~~~~~~t~~~f~ 428 (430)
+++++.+.+.|.
T Consensus 363 ~~~~~~~~~~~~ 374 (504)
T PRK07514 363 WRMPEKTAEEFR 374 (504)
T ss_pred cCCchhhhhhcc
Confidence 999999998884
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=359.31 Aligned_cols=397 Identities=19% Similarity=0.209 Sum_probs=328.5
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEECC-----------------------eeeeHHHHHHHHHHHHHHHHHcCCCCCC
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYES-----------------------KHYTWQQTYQRCRRLASALSQLSIGPGT 71 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~-----------------------~~~Ty~el~~~~~~la~~L~~~gv~~g~ 71 (430)
....-.|+.+++++.++++.++.++-+++ .++||.|+.+++..+|.+|.+.|+++++
T Consensus 36 ~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e 115 (678)
T KOG1180|consen 36 PNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKE 115 (678)
T ss_pred CCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34456789999999999999999986532 6899999999999999999999999877
Q ss_pred e-EEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCe
Q 048242 72 A-VSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPV 150 (430)
Q Consensus 72 ~-V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (430)
. |+|+++.+.+|..+++||++.+..+|-+...+..+.+.|-|++++++.+||+.+.+..+....+..+ ..+.
T Consensus 116 ~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~-------~vk~ 188 (678)
T KOG1180|consen 116 TKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAK-------TVKH 188 (678)
T ss_pred CeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccC-------ceeE
Confidence 6 9999999999999999999999999999999999999999999999999999999888777777666 7888
Q ss_pred EEEecCCCCCCC--ccccc--ccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHH
Q 048242 151 LIVIGDETCDRA--PLEYA--LSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLN 226 (430)
Q Consensus 151 ~i~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~ 226 (430)
+|.++..+.... ..+.. ....+++|+++++.+.+...++.+..++|+|+|+|||||||.||||+++|.|+++.+..
T Consensus 189 II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G 268 (678)
T KOG1180|consen 189 IIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTG 268 (678)
T ss_pred EEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhh
Confidence 999986443322 22211 23457889999998887765555668899999999999999999999999999999988
Q ss_pred HHhhc-CCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCC-----C---HHHHHHHHHhhCceEEeeccHHHHHH
Q 048242 227 VVLTW-GMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQA-----S---AKAIYKAIAEHGVTNFCAAPIVLNSI 297 (430)
Q Consensus 227 ~~~~~-~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~-----~---~~~~~~~l~~~~vt~~~~~p~~l~~l 297 (430)
..... .+...|+++..+||.|++.+..-+.+++.|+.+=..+.. + ...--..+...|||.+.++|..++++
T Consensus 269 ~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drV 348 (678)
T KOG1180|consen 269 VGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRV 348 (678)
T ss_pred hcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHH
Confidence 87776 578999999999999999999999999998876544321 1 11222355678999999999999998
Q ss_pred HcCCCC--------------------------CCCC---------------CCCceeEEeecCCCCCHHHHHHHH-hcCc
Q 048242 298 VNAPPE--------------------------DTIL---------------PLPHVVNVNTGGSPPPPPILLAMS-QKGF 335 (430)
Q Consensus 298 ~~~~~~--------------------------~~~~---------------~l~~lr~v~~~G~~l~~~~~~~~~-~~~~ 335 (430)
.+.... .... .-..||++++||+||+++..+.+. =+.+
T Consensus 349 rKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~ 428 (678)
T KOG1180|consen 349 RKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCC 428 (678)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccc
Confidence 753100 0000 035999999999999999999998 5588
Q ss_pred EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccccc
Q 048242 336 RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKG 415 (430)
Q Consensus 336 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~g 415 (430)
++.++||.||+++..++..+.+ -..+.+|.|++.+ +++++|-+.+...+.+.-..|||+++|+++..|
T Consensus 429 Pv~qGYGLTEtca~~tv~e~~d-----------~~~g~vG~pl~c~-eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~g 496 (678)
T KOG1180|consen 429 PVLQGYGLTETCAAATVLEPED-----------FSTGRVGAPLPCC-EIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMG 496 (678)
T ss_pred cccccccccchhcccEecChhh-----------cccccccCCccce-EEEEEEhhhcCccCCCCCCCceEEecCCccChh
Confidence 9999999999988887765432 2457999999999 999999876777665522379999999999999
Q ss_pred ccCCcccchHhh-h-CC
Q 048242 416 YLKNPKANEEAF-A-NG 430 (430)
Q Consensus 416 Y~~~~~~t~~~f-~-dg 430 (430)
||+|++.|++.| . ||
T Consensus 497 Y~kn~ekT~e~ft~~~G 513 (678)
T KOG1180|consen 497 YYKNEEKTKEDFTVEDG 513 (678)
T ss_pred hhCChhhhhhhceecCC
Confidence 999999999999 3 55
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=383.40 Aligned_cols=392 Identities=26% Similarity=0.334 Sum_probs=308.3
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECC---eeeeHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYES---KHYTWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~---~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
+.+.++.++|++.++.+|+++|+++.+ +++||+||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus 7 ~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~ 86 (576)
T PRK05620 7 DVPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC 86 (576)
T ss_pred cCCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 445789999999999999999998753 799999999999999999996 7999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
+|++++|++|..+.+++.++++.++++++|+++.....+.+...... ....++.++.................
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (576)
T PRK05620 87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECP-------CVRAVVFIGPSDADSAAAHMPEGIKV 159 (576)
T ss_pred cCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCc-------cccEEEEecCcccccchhcccccccc
Confidence 99999999999999999999999999999999877666655544433 33445555432211110011111234
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHH--HhhcCCCCCCEEEeccCchhhhh
Q 048242 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNV--VLTWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~~~~~pl~h~~g 250 (430)
.+|.+++........ .....++++++++|||||||.||+|+++|+++....... ...+.+..++++++.+|++|.++
T Consensus 160 ~~~~~l~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 238 (576)
T PRK05620 160 YSYEALLDGRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLS 238 (576)
T ss_pred ccHHHHhhcCCCcCC-CCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhh
Confidence 457776654322211 133567899999999999999999999999986554432 33567888999999999999999
Q ss_pred hHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 251 WCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 251 l~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
+...+.++..|+++++.. .+++..+++.++++++|+++++|.++..++........+ ..+||.++++|+++++++.++
T Consensus 239 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~ 317 (576)
T PRK05620 239 WGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPE-RMSLQEIYVGGSAVPPILIKA 317 (576)
T ss_pred hHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcc-cCceeEEEEcCCCCCHHHHHH
Confidence 988888888999988875 579999999999999999999999999888654333333 568999999999999999999
Q ss_pred HH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEe
Q 048242 330 MS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMR 408 (430)
Q Consensus 330 ~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~ 408 (430)
++ .+++++++.||+||++..++.....+... .........++|++.+++ +++|+|+ ++.++...++.|||+++
T Consensus 318 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~~~-~~~i~~~--g~~~~~~~~~~Gel~v~ 391 (576)
T PRK05620 318 WEERYGVDVVHVWGMTETSPVGTVARPPSGVS---GEARWAYRVSQGRFPASL-EYRIVND--GQVMESTDRNEGEIQVR 391 (576)
T ss_pred HHHHhCCceeeeccccccccceeeeccCCccc---cccccccccccCCcCCce-eEEEecC--CccccCCCCCceEEEEE
Confidence 98 66999999999999987665543221100 000001124789999999 8999986 66665322268999999
Q ss_pred cCcccccccCCcccc
Q 048242 409 GNMVMKGYLKNPKAN 423 (430)
Q Consensus 409 g~~v~~gY~~~~~~t 423 (430)
|++++.|||++++.+
T Consensus 392 g~~~~~gY~~~~~~t 406 (576)
T PRK05620 392 GNWVTASYYHSPTEE 406 (576)
T ss_pred cCcccccccCCcccc
Confidence 999999999999988
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=381.49 Aligned_cols=390 Identities=23% Similarity=0.324 Sum_probs=309.7
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
.+....++.++|++.++++|+++|+++. ++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||++
T Consensus 13 ~~~~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~ 92 (558)
T PRK12583 13 KPLLTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATAR 92 (558)
T ss_pred CCcccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 3445568999999999999999999884 47899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhcc------CCCCCCCCeEEEecCCCCCC
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEGK------SEGLFKPPVLIVIGDETCDR 161 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~ 161 (430)
+|+++++++|..+.+++.++++.+++++++++.... ..+.......... ....+....++..+...
T Consensus 93 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 169 (558)
T PRK12583 93 IGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP--- 169 (558)
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCC---
Confidence 999999999999999999999999999999976432 2222211111000 00111222333333221
Q ss_pred CcccccccCCccchhhhhhcCCCC-----CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCC
Q 048242 162 APLEYALSKGVTEYEKLLETGDPE-----FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEG 236 (430)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~ 236 (430)
..+...|++........ ........++++++++|||||||.||+|.++|.++.+++......+++..+
T Consensus 170 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 242 (558)
T PRK12583 170 -------PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEH 242 (558)
T ss_pred -------CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCC
Confidence 11223444443322211 011123457889999999999999999999999999888888888889999
Q ss_pred CEEEeccCchhhhhhHH-HHHHHhhcceEEEe-CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeE
Q 048242 237 AVYLWTLPIFHGNGWCF-TWSLAALCGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVN 314 (430)
Q Consensus 237 ~~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~ 314 (430)
|++++..|++|.+|+.. .+.++..|+++++. ..+++..+++.++++++|+++++|+++..++........+ +++||.
T Consensus 243 d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~~~lr~ 321 (558)
T PRK12583 243 DRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFD-LSSLRT 321 (558)
T ss_pred CeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCC-chhheE
Confidence 99999999999999875 55566677777755 3578999999999999999999999999888776555555 899999
Q ss_pred EeecCCCCCHHHHHHHH-hcC-cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCC
Q 048242 315 VNTGGSPPPPPILLAMS-QKG-FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTN 392 (430)
Q Consensus 315 v~~~G~~l~~~~~~~~~-~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~ 392 (430)
+++||+++++++.+++. .++ ..+++.||+||+++++..+...+. ......++|+|.+++ .++|+|++ +
T Consensus 322 i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~~~i~d~~-~ 391 (558)
T PRK12583 322 GIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADD--------LERRVETVGRTQPHL-EVKVVDPD-G 391 (558)
T ss_pred EEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccc--------cccccCCCCccCCCC-eEEEECCC-C
Confidence 99999999999999997 665 579999999999877665432211 112347899999999 89999998 9
Q ss_pred CCCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 393 QPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 393 ~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
++++.| +.|||+++|+.++.||+++++.+...|
T Consensus 392 ~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~ 424 (558)
T PRK12583 392 ATVPRG--EIGELCTRGYSVMKGYWNNPEATAESI 424 (558)
T ss_pred CCCCCC--CeeEEEEEeCccchhhcCChHHHHhhc
Confidence 999998 899999999999999999999988776
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=381.35 Aligned_cols=388 Identities=19% Similarity=0.224 Sum_probs=305.5
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
....++.++|.+.++++|+++|+++.+..+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 20 ~~~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 99 (557)
T PRK07059 20 SQYPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYV 99 (557)
T ss_pred CCCCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeE
Confidence 33468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCC--Cc-----------
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDR--AP----------- 163 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~----------- 163 (430)
++|++|..+.+++.++++.++++++++++.....+....... ....++......... ..
T Consensus 100 ~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (557)
T PRK07059 100 VVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT--------AVKHVVVASMGDLLGFKGHIVNFVVRRVKK 171 (557)
T ss_pred EeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc--------CCceeEEecccccccccccccccccccccc
Confidence 999999999999999999999999999876655444432211 122222221110000 00
Q ss_pred -ccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc----CC---CC
Q 048242 164 -LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW----GM---KE 235 (430)
Q Consensus 164 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~----~~---~~ 235 (430)
.......+...+.+.+..............++++++|+|||||||.||+|+++|.++..++....... .. ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 251 (557)
T PRK07059 172 MVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPD 251 (557)
T ss_pred cccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCC
Confidence 00001122334555544433222222345678999999999999999999999999977654433221 11 12
Q ss_pred CCEEEeccCchhhhhhH-HHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCcee
Q 048242 236 GAVYLWTLPIFHGNGWC-FTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVV 313 (430)
Q Consensus 236 ~~~~~~~~pl~h~~gl~-~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr 313 (430)
...+++.+|++|.+++. ..+.++..|++.++.+ ..++..+++.++++++|++..+|.++..+.........+ ++++|
T Consensus 252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~-~~~l~ 330 (557)
T PRK07059 252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLD-FSKLI 330 (557)
T ss_pred CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCC-chhhe
Confidence 45678899999998876 4566777888877775 358899999999999999999999999999877655555 88999
Q ss_pred EEeecCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCC
Q 048242 314 NVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTN 392 (430)
Q Consensus 314 ~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~ 392 (430)
.++.||+++++.+.++|+ .+++++++.||+||++..++.+.... ....+++|+|++++ +++|+|++ +
T Consensus 331 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~vG~p~~g~-~v~i~d~~-~ 398 (557)
T PRK07059 331 VANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDA----------TEFSGTIGLPLPST-EVSIRDDD-G 398 (557)
T ss_pred EEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCC----------CCcCCcccCccCCc-EEEEECCC-C
Confidence 999999999999999998 56999999999999987765443211 12347899999999 99999987 8
Q ss_pred CCCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 393 QPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 393 ~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
++++.| +.|||+++|++++.|||++++.+.+.|
T Consensus 399 ~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~ 431 (557)
T PRK07059 399 NDLPLG--EPGEICIRGPQVMAGYWNRPDETAKVM 431 (557)
T ss_pred CCCCCC--CceEEEEeCCccchhhhcCHHHHhhhc
Confidence 999988 899999999999999999999998877
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=380.45 Aligned_cols=374 Identities=21% Similarity=0.293 Sum_probs=301.5
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
|...++.++|+++++ |+++|+++.++.+||+||.+++.++|+.|.+.|+++|++|+++++|++++++++|||+++|++
T Consensus 22 ~~~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v 99 (536)
T PRK10946 22 WQDLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVA 99 (536)
T ss_pred ecCccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeE
Confidence 346689999988887 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCC
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (430)
++++.+.....++.++++.++++.++++.... ..........+ ....++..++. +
T Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~-------------~ 159 (536)
T PRK10946 100 PVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHS-------SLRVVLLLNDD-------------G 159 (536)
T ss_pred EecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCC-------CceEEEEecCC-------------C
Confidence 88777777788899999999999999986431 11111111111 22333332221 1
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 172 VTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
...+.+.+....... ......++++++++|||||||.||+|+++|+++..++......+++..+|++++.+|++|.+++
T Consensus 160 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~ 238 (536)
T PRK10946 160 EHSLDDAINHPAEDF-TATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPM 238 (536)
T ss_pred CccHHHHhhCccccc-ccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccc
Confidence 122333333222111 1234567899999999999999999999999999998888888899999999999999999887
Q ss_pred HH--HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCC--CCCCCCCCCceeEEeecCCCCCHHHH
Q 048242 252 CF--TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP--PEDTILPLPHVVNVNTGGSPPPPPIL 327 (430)
Q Consensus 252 ~~--~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~--~~~~~~~l~~lr~v~~~G~~l~~~~~ 327 (430)
.. .+.++..|+++++.+.+++..++..++++++|++.++|.++..++... ...... +++||.+++||+++++++.
T Consensus 239 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~-~~~l~~v~~gg~~l~~~~~ 317 (536)
T PRK10946 239 SSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQ-LASLKLLQVGGARLSETLA 317 (536)
T ss_pred hhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcccc-ccceeEEEECCCCCCHHHH
Confidence 63 677788899999888899999999999999999999999999998763 222233 7899999999999999999
Q ss_pred HHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCcc-ccccceEEeeCCCCCCCCCCCCceeEE
Q 048242 328 LAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC-MCLEGLDVLDTKTNQPIPADGKTIGEV 405 (430)
Q Consensus 328 ~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~-~~~~~~~v~d~~~~~~~~~~~~~~Gel 405 (430)
+++. .+++++++.||+||+........ . ......+++|+|+ +++ .++|+|++ +++++.| +.|||
T Consensus 318 ~~~~~~~g~~~~~~YG~tE~~~~~~~~~-~---------~~~~~~~~~G~p~~~~~-~v~i~d~~-~~~~~~g--~~Gel 383 (536)
T PRK10946 318 RRIPAELGCQLQQVFGMAEGLVNYTRLD-D---------SDERIFTTQGRPMSPDD-EVWVADAD-GNPLPQG--EVGRL 383 (536)
T ss_pred HHHHHhcCCeEEEeecccccceeeecCC-C---------ccccccccCCcccCCCc-eEEEECCC-CCCCCCC--CccEE
Confidence 9997 67999999999999653332211 1 0112347899999 778 89999987 9999998 99999
Q ss_pred EEecCcccccccCCcccchHhhh
Q 048242 406 VMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 406 ~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
+++|++++.|||++++.|.+.|.
T Consensus 384 ~v~g~~~~~GY~~~~~~t~~~~~ 406 (536)
T PRK10946 384 MTRGPYTFRGYYKSPQHNASAFD 406 (536)
T ss_pred EEecCccchhhcCCcccchhhcc
Confidence 99999999999999999998883
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=395.43 Aligned_cols=348 Identities=16% Similarity=0.152 Sum_probs=286.6
Q ss_pred CHHHHHHHHHhh--CCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 21 TPLWFLERAATV--HPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 21 t~~~~l~~~~~~--~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
++.++|.++++. +|+++|++.. ..+||+||.++++++|+.|.++|+++|++|+|+++|++++++++|||+++|++++
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~v 83 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAF 83 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEE
Confidence 788999888886 7999999874 5899999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.++++++|++.+....+.. ..++. ..+.
T Consensus 84 pi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~---------------~~~~~---------------------~~~~ 127 (705)
T PRK06060 84 LANPELHRDDHALAARNTEPALVVTSDALRDRFQP---------------SRVAE---------------------AAEL 127 (705)
T ss_pred ecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc---------------cccch---------------------hhhh
Confidence 99999999999999999999999998754332211 00000 0000
Q ss_pred hhcCC-CCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH-hhcCCCCCCEEEeccCchhhhhhH-HHH
Q 048242 179 LETGD-PEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV-LTWGMKEGAVYLWTLPIFHGNGWC-FTW 255 (430)
Q Consensus 179 ~~~~~-~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~pl~h~~gl~-~~~ 255 (430)
+.... ..+....+..++++++++|||||||.||+|+++|+++.+.+.+.. ..+++..++++++..|++|.+++. .++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 207 (705)
T PRK06060 128 MSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVW 207 (705)
T ss_pred hhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHH
Confidence 00000 001111234568999999999999999999999999988776654 457788999999999999998875 567
Q ss_pred HHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc
Q 048242 256 SLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK 333 (430)
Q Consensus 256 ~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~ 333 (430)
.++..|+++++.+ .+++..+...+.++++|+++++|+++..+.+.... .. +++||.+++||+++++++.+++. .+
T Consensus 208 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~-~~slr~i~~gGe~l~~~~~~~~~~~~ 284 (705)
T PRK06060 208 FPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP--DS-FRSLRCVVSAGEALELGLAERLMEFF 284 (705)
T ss_pred HHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc--cc-ccceeEEEEecCcCCHHHHHHHHHHc
Confidence 7888999999886 47888899999999999999999999999875432 23 78999999999999999999998 45
Q ss_pred -CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcc
Q 048242 334 -GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMV 412 (430)
Q Consensus 334 -~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v 412 (430)
++++++.||+||++..+..+... ....+++|+|++++ +++|+|++ +++++.| +.|||+|+|+++
T Consensus 285 ~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~~iG~p~~~~-~v~i~d~~-g~~~~~g--~~GEl~i~g~~v 349 (705)
T PRK06060 285 GGIPILDGIGSTEVGQTFVSNRVD-----------EWRLGTLGRVLPPY-EIRVVAPD-GTTAGPG--VEGDLWVRGPAI 349 (705)
T ss_pred CCCceEeeeeccccCceEEeccCC-----------CCCcCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEccchh
Confidence 58999999999997554432211 11347899999999 99999998 9999988 899999999999
Q ss_pred cccccCCcccc
Q 048242 413 MKGYLKNPKAN 423 (430)
Q Consensus 413 ~~gY~~~~~~t 423 (430)
+.|||++++.+
T Consensus 350 ~~GY~~~~~~~ 360 (705)
T PRK06060 350 AKGYWNRPDSP 360 (705)
T ss_pred hhhhhCCCccc
Confidence 99999999865
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=382.67 Aligned_cols=384 Identities=18% Similarity=0.228 Sum_probs=296.0
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYES--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..++.++|++.++++|+++|+++.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 94 (534)
T PRK05852 15 GPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV 94 (534)
T ss_pred cccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE
Confidence 4579999999999999999999754 57999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCcc--c
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVT--E 174 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~ 174 (430)
++|++|.++..++.++++.++++++|++........... .. .....+.+...... ..+.. .
T Consensus 95 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~--------~~~~~~~~ 157 (534)
T PRK05852 95 VVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPT--TR-------WWPLTVNVGGDSGP--------SGGTLSVH 157 (534)
T ss_pred EeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccc--cc-------ccceeeeecccccc--------cccccccc
Confidence 999999999999999999999999999864332111000 00 00111111111000 00000 0
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-
Q 048242 175 YEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF- 253 (430)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~- 253 (430)
+..... ............++.++++|||||||.||+|+++|+++...+......+++..+|++++..|++|.+++..
T Consensus 158 ~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 235 (534)
T PRK05852 158 LDAATE--PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAA 235 (534)
T ss_pred cccccC--CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHH
Confidence 001000 00000111223568899999999999999999999999988888888888999999999999999999885
Q ss_pred HHHHHhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC--CCCCCCceeEEeecCCCCCHHHHHH
Q 048242 254 TWSLAALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED--TILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 254 ~~~~l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~--~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
++.++..|+++++.. .+++..+++.++++++|+++++|.+++.+.+..... ..+ .+++|.++++|+++++.+.+.
T Consensus 236 ~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~~G~~~~~~~~~~ 314 (534)
T PRK05852 236 LLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRK-PAALRFIRSCSAPLTAETAQA 314 (534)
T ss_pred HHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccccccc-CCCeeEEEECCCCCCHHHHHH
Confidence 555666777766643 478999999999999999999999999998865432 233 789999999999999999999
Q ss_pred HH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEe
Q 048242 330 MS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMR 408 (430)
Q Consensus 330 ~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~ 408 (430)
++ .++.++++.||+||++..++......... ........+..|+ .+++ +++|+|++ +++++.+ +.|||+++
T Consensus 315 ~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~---~~~~~~~~g~~g~-~~g~-~~~i~d~~-g~~~~~g--~~Gel~v~ 386 (534)
T PRK05852 315 LQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQ---TENPVVSTGLVGR-STGA-QIRIVGSD-GLPLPAG--AVGEVWLR 386 (534)
T ss_pred HHHHhCCChhhccCccccchhhhcCCcccccc---ccCcccccccCCC-CCCC-eEEEECCC-CCCCCCC--CceEEEEe
Confidence 98 67999999999999987665432210000 0000112234444 6899 89999998 8999998 89999999
Q ss_pred cCcccccccCCcccchHhhhCC
Q 048242 409 GNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 409 g~~v~~gY~~~~~~t~~~f~dg 430 (430)
|++++.|||++++.|.+.|.||
T Consensus 387 g~~v~~gY~~~~~~t~~~~~~g 408 (534)
T PRK05852 387 GTTVVRGYLGDPTITAANFTDG 408 (534)
T ss_pred cCcccchhcCCcccchhhhcCC
Confidence 9999999999999999988664
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=453.91 Aligned_cols=369 Identities=17% Similarity=0.199 Sum_probs=310.9
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|+++++++|+++|+++.+.++||+||.++++++|+.|.+.|+++|++|+|++++++++++++||++++|++++
T Consensus 3719 ~~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~v 3798 (4334)
T PRK05691 3719 EQSYVRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYL 3798 (4334)
T ss_pred ccCHHHHHHHHHHhCCCceEEEcCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
||+|.++.+++.++++.+++++++++................. ....++..++..
T Consensus 3799 pld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-------------------- 3853 (4334)
T PRK05691 3799 PLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCA-----NRPRLLVWEEVQ-------------------- 3853 (4334)
T ss_pred CCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccc-----cccceeeecccc--------------------
Confidence 9999999999999999999999999987655443332221100 111222222110
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
..............+++.++|+|||||||+||||+++|+++.+.+.+....++++.+|+++...++.|..+++.++.++
T Consensus 3854 -~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l 3932 (4334)
T PRK05691 3854 -AGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAP 3932 (4334)
T ss_pred -cccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHH
Confidence 0001111111235678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhc--
Q 048242 259 ALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQK-- 333 (430)
Q Consensus 259 ~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~-- 333 (430)
+.|+++++++. .++..+++.++++++|++..+|++++.++..... . +++||.+++|||++++++.++|.+.
T Consensus 3933 ~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~---~-~~~lr~~~~gGe~l~~~~~~~~~~~~~ 4008 (4334)
T PRK05691 3933 LFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ---A-LDGLRWMLPTGEAMPPELARQWLQRYP 4008 (4334)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc---c-CCCceEEEecCCcCCHHHHHHHHHhCC
Confidence 99999999863 5789999999999999999999999998864322 2 7899999999999999999999743
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
+++++|.||+||++..+++...... .......++|+|++++ ++.|+|.+ ++++|.| .+|||+|+|++++
T Consensus 4009 ~~~l~n~YG~TE~t~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~v~d~~-~~~~p~g--~~GEL~i~G~~v~ 4077 (4334)
T PRK05691 4009 QIGLVNAYGPAECSDDVAFFRVDLA-------STRGSYLPIGSPTDNN-RLYLLDEA-LELVPLG--AVGELCVAGTGVG 4077 (4334)
T ss_pred CCeEEeCccCccceeEEEEEEcccc-------cccCCcCCCCCccCCC-EEEEECCC-CCCCCCC--CceEEEEeccccc
Confidence 8899999999999887765543211 0111235799999999 99999987 9999999 8999999999999
Q ss_pred ccccCCcccchHhhh
Q 048242 414 KGYLKNPKANEEAFA 428 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~ 428 (430)
+||+|+|++|+++|.
T Consensus 4078 ~GY~~~~~~t~~~f~ 4092 (4334)
T PRK05691 4078 RGYVGDPLRTALAFV 4092 (4334)
T ss_pred ccccCCcccchhhcc
Confidence 999999999999993
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=450.62 Aligned_cols=374 Identities=20% Similarity=0.233 Sum_probs=313.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHH
Q 048242 10 LPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFG 89 (430)
Q Consensus 10 ~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 89 (430)
++.........++.++|++.++++|+++|+++.++++||+||.++++++|+.|.++|+++|++|+|++++++++++++||
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 581 (3956)
T PRK12467 502 WNAPATEYAPDCVHQLIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLA 581 (3956)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 34444445667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccccc
Q 048242 90 VPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALS 169 (430)
Q Consensus 90 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (430)
|+++|++++|++|.++.+++.++++.+++++++++.+....+.. . ....++.++....
T Consensus 582 il~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~-------~~~~~~~~~~~~~---------- 639 (3956)
T PRK12467 582 VLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV-----P-------AGLRSLCLDEPAD---------- 639 (3956)
T ss_pred HHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc-----c-------cCccEEEeccccc----------
Confidence 99999999999999999999999999999999998743221110 0 1122232222110
Q ss_pred CCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhh
Q 048242 170 KGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGN 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~ 249 (430)
.... ...........++++++|+|||||||+||||+++|+++.+.+.+....+++..+|+++...|++|..
T Consensus 640 --------~~~~-~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~ 710 (3956)
T PRK12467 640 --------LLCG-YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDL 710 (3956)
T ss_pred --------cccc-cCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhH
Confidence 0000 0111111245678999999999999999999999999999999998899999999999999999999
Q ss_pred hhHHHHHHHhhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHH
Q 048242 250 GWCFTWSLAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPI 326 (430)
Q Consensus 250 gl~~~~~~l~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 326 (430)
++..++.++..|+++++.+. +++..+++.|+++++|+++++|++++.+....... . ..++|.+++||+++++++
T Consensus 711 ~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~-~~~lr~i~~gGe~l~~~~ 787 (3956)
T PRK12467 711 GVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA--L-PRPQRALVCGGEALQVDL 787 (3956)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc--c-CCcccEEEEEeecCCHHH
Confidence 99999999999999999863 68999999999999999999999999998764332 2 567899999999999999
Q ss_pred HHHHHhc--CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeE
Q 048242 327 LLAMSQK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGE 404 (430)
Q Consensus 327 ~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Ge 404 (430)
.++|++. +++++|.||+||++..++.+...... ......++|+|++++ +++|+|++ +++++.| ++||
T Consensus 788 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~G--~~GE 856 (3956)
T PRK12467 788 LARVRALGPGARLINHYGPTETTVGVSTYELSDEE-------RDFGNVPIGQPLANL-GLYILDHY-LNPVPVG--VVGE 856 (3956)
T ss_pred HHHHHHhCCCCEEEeCcCCChhhhheeeEeccccc-------ccCCCCcccCCcCCC-EEEEECCC-CCCCCCC--CceE
Confidence 9999854 68999999999998777665432110 001136799999999 99999987 9999998 8999
Q ss_pred EEEecCcccccccCCcccchHhhh
Q 048242 405 VVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 405 l~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
|+|+|+++++||+++|++|+++|.
T Consensus 857 L~i~G~~v~~GYl~~p~~T~~~F~ 880 (3956)
T PRK12467 857 LYIGGAGLARGYHRRPALTAERFV 880 (3956)
T ss_pred EEecccccchhhcCCccccHhhCc
Confidence 999999999999999999999983
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=375.29 Aligned_cols=374 Identities=18% Similarity=0.228 Sum_probs=305.3
Q ss_pred HHHHHHHH-HhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeec
Q 048242 22 PLWFLERA-ATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCI 100 (430)
Q Consensus 22 ~~~~l~~~-~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l 100 (430)
-.+++++. ++.+|+++|+++.+..+||.||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++|+
T Consensus 6 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 6 AEDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred HHHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeec
Confidence 34667665 67799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhh
Q 048242 101 NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180 (430)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (430)
+|..+.+++.++++.+++++++++.+....+.+.....+ ....++..+... .....+.+...
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----------~~~~~~~~~~~ 147 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP-------HLEHRVVVGRPE-----------AGEVQLAELLA 147 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCC-------CccEEEEeCCCC-----------cccccHHHHhh
Confidence 999999999999999999999999877665555433332 334455444321 11123444333
Q ss_pred cCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHH-HHhhcCCCCCCEEEeccCchhhhhhHH-HHHHH
Q 048242 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLN-VVLTWGMKEGAVYLWTLPIFHGNGWCF-TWSLA 258 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~~~l 258 (430)
...... ......++++++++|||||||.||+|.++|+++...+.. ....++++.+|+++..+|++|.+++.. ++.++
T Consensus 148 ~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l 226 (508)
T TIGR02262 148 TESEQF-KPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPM 226 (508)
T ss_pred cCCCcc-CCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHH
Confidence 222211 112345789999999999999999999999999877654 445668889999999999999999864 55667
Q ss_pred hhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcE
Q 048242 259 ALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFR 336 (430)
Q Consensus 259 ~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~ 336 (430)
..|+++++.+ .+++..+++.|+++++|+++++|.++..++......... ..++|.++++|+++++++.+.|+ .++++
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~~~ 305 (508)
T TIGR02262 227 SVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAED-QVRLRLCTSAGEALPAEVGQRWQARFGVD 305 (508)
T ss_pred HcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccc-cccceeEEEcCCCCCHHHHHHHHHHhCCc
Confidence 7899888875 468999999999999999999999999888765443344 67999999999999999999998 57999
Q ss_pred EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccc
Q 048242 337 VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGY 416 (430)
Q Consensus 337 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY 416 (430)
+++.||+||+++.+..+... ....+++|+|++++ +++|+|.+ +++++.+ +.|||+++|++++.||
T Consensus 306 v~~~YG~tE~~~~~~~~~~~-----------~~~~~~~G~~~~g~-~v~i~d~~-~~~~~~g--~~Gel~i~~~~~~~gY 370 (508)
T TIGR02262 306 IVDGIGSTEMLHIFLSNLPG-----------DVRYGTSGKPVPGY-RLRLVGDG-GQDVAAG--EPGELLISGPSSATMY 370 (508)
T ss_pred hhhCccccccCceeecCCcc-----------CCCCCCcCCCCCCc-EEEEECCC-CCCCCCC--CeeEEEEecCcccccc
Confidence 99999999998755543211 11246899999999 89999955 9999998 8999999999999999
Q ss_pred cCCcccchHhhhCC
Q 048242 417 LKNPKANEEAFANG 430 (430)
Q Consensus 417 ~~~~~~t~~~f~dg 430 (430)
+++++++.+.|.+|
T Consensus 371 ~~~~~~~~~~~~~~ 384 (508)
T TIGR02262 371 WNNRAKTRDTFQGE 384 (508)
T ss_pred CCCHHHhHhhhhcC
Confidence 99999998877543
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=456.15 Aligned_cols=363 Identities=17% Similarity=0.185 Sum_probs=308.5
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|++.++++|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 510 ~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~v 589 (5163)
T PRK12316 510 QRGVHRLFEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYV 589 (5163)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.+++++++++......+.. . ....++.++.... +
T Consensus 590 pld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~--------~~~~~~~~~~~~~---------------~--- 639 (5163)
T PRK12316 590 PLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL----A--------AGVQVLDLDRPAA---------------W--- 639 (5163)
T ss_pred ccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc----c--------cCceEEEecCcch---------------h---
Confidence 99999999999999999999999998754332110 0 1122333332110 0
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
+.. ...........++++++|+|||||||+||||+++|+++.+.+.+....++++.+++++...|++|..++..++.++
T Consensus 640 ~~~-~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L 718 (5163)
T PRK12316 640 LEG-YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPL 718 (5163)
T ss_pred hcc-CCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHH
Confidence 000 0111111235678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceEEEeC---CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-
Q 048242 259 ALCGTSVMLR---QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK- 333 (430)
Q Consensus 259 ~~g~~~v~~~---~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~- 333 (430)
+.|+++++.+ .+++..+++.++++++|+++++|++++.+.+.... .. +++||.+++||+++++++.++|. .+
T Consensus 719 ~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~-~~~l~~~~~gGe~l~~~~~~~~~~~~~ 795 (5163)
T PRK12316 719 MSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV--AS-CTSLRRIVCSGEALPADAQEQVFAKLP 795 (5163)
T ss_pred hCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc--cc-CCCccEEEEeeccCCHHHHHHHHHhCC
Confidence 9999999984 47899999999999999999999999999875432 23 78999999999999999999996 44
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
+++++|.||+||++..++...... ......++|+|++|+ +++|+|++ +++++.| ++|||+|+|++++
T Consensus 796 ~~~l~n~YG~TE~~~~~~~~~~~~---------~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G~~v~ 862 (5163)
T PRK12316 796 QAGLYNLYGPTEAAIDVTHWTCVE---------EGGDSVPIGRPIANL-ACYILDAN-LEPVPVG--VLGELYLAGRGLA 862 (5163)
T ss_pred CCeEEeCcCcChheeeeeEEeccc---------ccCCCCCCccccCCC-EEEEECCC-CCCCCCC--CceEEEecccccC
Confidence 789999999999986555433211 112346899999999 99999988 9999998 8999999999999
Q ss_pred ccccCCcccchHhhh
Q 048242 414 KGYLKNPKANEEAFA 428 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~ 428 (430)
.||+++|++|+++|.
T Consensus 863 ~GYl~~~~~t~~~f~ 877 (5163)
T PRK12316 863 RGYHGRPGLTAERFV 877 (5163)
T ss_pred hhhCCChhhhhhhCC
Confidence 999999999999983
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-47 Score=384.03 Aligned_cols=366 Identities=18% Similarity=0.231 Sum_probs=285.7
Q ss_pred hCCCcceEEECC-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCCh
Q 048242 32 VHPTRKSVVYES-----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNP 106 (430)
Q Consensus 32 ~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~ 106 (430)
.+|+++|+++.+ +++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++.
T Consensus 96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~ 175 (655)
T PRK03584 96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGV 175 (655)
T ss_pred CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCH
Confidence 579999999853 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCceEEEeccccH---------HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 107 LNVAIILGHAEAALVFVDQQYF---------ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 107 ~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+++.++++.++++++|+++... ..+.++....+ ....++.++...... ..........|++
T Consensus 176 ~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~---~~~~~~~~~~~~~ 245 (655)
T PRK03584 176 QGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP-------SLEHVVVVPYLGPAA---AAAALPGALLWED 245 (655)
T ss_pred HHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCC-------CccEEEEEecCCCcc---cccccCCcccHHH
Confidence 9999999999999999987532 22222222221 334455554321100 0011223455666
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHH-HHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAY-LMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWS 256 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~-~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~ 256 (430)
++...............+++++|+|||||||.||||+++|.+++ +.+......+++..+|++++..++.|+.+. ..+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~ 324 (655)
T PRK03584 246 FLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVS 324 (655)
T ss_pred HhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHH
Confidence 66522222222234567899999999999999999999999875 445556667788999999999998887543 4567
Q ss_pred HHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCC--CCCCCCCCceeEEeecCCCCCHHHHHHH
Q 048242 257 LAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP--EDTILPLPHVVNVNTGGSPPPPPILLAM 330 (430)
Q Consensus 257 ~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~--~~~~~~l~~lr~v~~~G~~l~~~~~~~~ 330 (430)
+++.|+++++.+. +++..+++.++++++|++.++|++++.+.+... ....+ +++||.++++|+++++++.+++
T Consensus 325 ~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~~Ge~l~~~~~~~~ 403 (655)
T PRK03584 325 GLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHD-LSALRTIGSTGSPLPPEGFDWV 403 (655)
T ss_pred HHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCC-hhheEEEEEecCCCCHHHHHHH
Confidence 8889999999852 578999999999999999999999999876432 22344 8999999999999999999999
Q ss_pred H-hc--CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEE
Q 048242 331 S-QK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVM 407 (430)
Q Consensus 331 ~-~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v 407 (430)
. .+ ++.+.+.||+||+++.+...... .....+++|.|.+|+ +++|+|++ |+++ .+ +.|||+|
T Consensus 404 ~~~~~~~~~~~~~yG~TE~~~~~~~~~~~----------~~~~~g~~g~p~~g~-~~~ivd~~-g~~~-~g--~~GeL~v 468 (655)
T PRK03584 404 YEHVKADVWLASISGGTDICSCFVGGNPL----------LPVYRGEIQCRGLGM-AVEAWDED-GRPV-VG--EVGELVC 468 (655)
T ss_pred HHHhCCCceEEeccChHhhhcccccCCCC----------CCcCCCccCCCcCCc-eeEEECCC-CCCC-CC--CceEEEE
Confidence 8 55 57899999999986543322111 012347899999999 99999988 8888 56 8999999
Q ss_pred ecC--cccccccCCcccch
Q 048242 408 RGN--MVMKGYLKNPKANE 424 (430)
Q Consensus 408 ~g~--~v~~gY~~~~~~t~ 424 (430)
+|+ +++.|||++++.++
T Consensus 469 ~gp~p~~~~gy~~~~~~~~ 487 (655)
T PRK03584 469 TKPFPSMPLGFWNDPDGSR 487 (655)
T ss_pred ccCCCCCcceeeCCCccch
Confidence 996 89999999998654
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=373.95 Aligned_cols=390 Identities=21% Similarity=0.278 Sum_probs=301.9
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
.+.++.++|++.++.+|+++|+++.++.+||.||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~ 98 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV 98 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence 35689999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCc---ccccccCCccc
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP---LEYALSKGVTE 174 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~ 174 (430)
+|++|..+.+++.++++.++++++++++.. .......+..... ....++.++........ ...........
T Consensus 99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (541)
T TIGR03205 99 VHLSPLDGERALSHKLSDSGARLLITSDLA-ALLPMALKFLEKG-----LLDRLIVCEDDNWGKVGTPQAPIPADPRIVT 172 (541)
T ss_pred EecCCCCCHHHHHHHHhhcCceEEEEeCch-hhhHHHHHhhhcc-----cceEEEEecccccccccccccccCCCccccc
Confidence 999999999999999999999999997632 1111111111100 12233333321110000 00001122344
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc------CCCCCCEEEeccCchhh
Q 048242 175 YEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW------GMKEGAVYLWTLPIFHG 248 (430)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~------~~~~~~~~~~~~pl~h~ 248 (430)
+.+++........ .....++++++++|||||||.||+|+++|.++....... ..+ .....+++++..|++|.
T Consensus 173 ~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~ 250 (541)
T TIGR03205 173 YADFVKGAAAPAE-WPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHI 250 (541)
T ss_pred HHHHHhcCCCCCC-CCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHH
Confidence 5555543222211 123567899999999999999999999999987654321 221 22345789999999999
Q ss_pred hhhHH-HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHH
Q 048242 249 NGWCF-TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL 327 (430)
Q Consensus 249 ~gl~~-~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~ 327 (430)
+++.. ++.++..|+++++...+++..+++.|.++++|++.++|+++..+.........+ ++++|.++.||+++++++.
T Consensus 251 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~i~~gg~~~~~~~~ 329 (541)
T TIGR03205 251 YALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRD-LSSLATIGSGGAPLPVEVA 329 (541)
T ss_pred HHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccC-ccccceEEEccccCCHHHH
Confidence 88775 666777899888888889999999999999999999999999998765433444 7899999999999999999
Q ss_pred HHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEee-CCCCCCCCCCCCceeEE
Q 048242 328 LAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLD-TKTNQPIPADGKTIGEV 405 (430)
Q Consensus 328 ~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d-~~~~~~~~~~~~~~Gel 405 (430)
++++ .++.++++.||+||++..++.+.... ....+++|.+++++ .++|.+ .+.+++++.+ +.|||
T Consensus 330 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~v~~~d~~~~~~~~g--~~Gel 396 (541)
T TIGR03205 330 NFFERKTGLKLKSGWGMTETCSPGTGHPPEG----------PDKPGSIGLMLPGI-ELDVVSLDDPTKVLPPG--EVGEL 396 (541)
T ss_pred HHHHHHhCCCeecccccccCCcccccCCCCC----------CCCCCCcceeccCc-eeEEEecCCCCccCCCC--CeeEE
Confidence 9987 56999999999999987666543211 11346899999999 898865 2348889888 89999
Q ss_pred EEecCcccccccCCcccchHhhhC
Q 048242 406 VMRGNMVMKGYLKNPKANEEAFAN 429 (430)
Q Consensus 406 ~v~g~~v~~gY~~~~~~t~~~f~d 429 (430)
+++|++++.|||++++.+.+.|.+
T Consensus 397 ~v~~~~~~~gy~~~~~~~~~~~~~ 420 (541)
T TIGR03205 397 RIRGPNVTRGYWNRPEESAEAFVG 420 (541)
T ss_pred EEecCCccccccCChhhhHhhhcc
Confidence 999999999999999999888854
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=376.90 Aligned_cols=390 Identities=22% Similarity=0.291 Sum_probs=300.4
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
...++.++|.+.++.+|+++|+++.++.+||+||.+++.++|+.|.+.|+++||+|+++++|+.++++++|||+++|+++
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 101 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIV 101 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccc------------
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE------------ 165 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------ 165 (430)
+|++|..+.+++.++++.++++++++++.....+....... ....++.............
T Consensus 102 vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (563)
T PRK06710 102 VQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT--------KIEHVIVTRIADFLPFPKNLLYPFVQKKQSN 173 (563)
T ss_pred eccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh--------ccceeEEeccccccccccccccchhhccccc
Confidence 99999999999999999999999999886554433222111 1112221110000000000
Q ss_pred cc----ccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh-hcCCC-CCCEE
Q 048242 166 YA----LSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL-TWGMK-EGAVY 239 (430)
Q Consensus 166 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~-~~~~~-~~~~~ 239 (430)
.. .......|....... ...........+++++++|||||||.||+|.++|+++..+...... .+... .++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (563)
T PRK06710 174 LVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVV 252 (563)
T ss_pred ccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceE
Confidence 00 000001111111111 1110111123578999999999999999999999998755443322 23333 45688
Q ss_pred EeccCchhhhhhHH-HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeec
Q 048242 240 LWTLPIFHGNGWCF-TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318 (430)
Q Consensus 240 ~~~~pl~h~~gl~~-~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~ 318 (430)
++.+|++|.+++.. ++.++..|+++++.+.+++..+++.|+++++|++.++|+++..++........+ +++||.+++|
T Consensus 253 l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~v~~g 331 (563)
T PRK06710 253 LGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYD-ISSIRACISG 331 (563)
T ss_pred EEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCC-hhhhhheeeC
Confidence 99999999998864 556778899999988899999999999999999999999999999876554445 7899999999
Q ss_pred CCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCC
Q 048242 319 GSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPA 397 (430)
Q Consensus 319 G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~ 397 (430)
|+++++++.++++ .+++++++.||+||++..+..+... .....+++|++.+++ .++|+|++++++++.
T Consensus 332 g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~~~~~~~~~~~ 400 (563)
T PRK06710 332 SAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLW----------EKRVPGSIGVPWPDT-EAMIMSLETGEALPP 400 (563)
T ss_pred CCcCCHHHHHHHHHhhCCCEecccccccCccccccCccc----------ccccCCccCCCCCCC-eEEEEECCCCccCCC
Confidence 9999999999998 5689999999999998655432211 012246899999999 899999777999999
Q ss_pred CCCceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 398 DGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 398 ~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
| +.|||+++|+.++.||+++++.+...|.||
T Consensus 401 g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g 431 (563)
T PRK06710 401 G--EIGEIVVKGPQIMKGYWNKPEETAAVLQDG 431 (563)
T ss_pred C--CceEEEEecCccchhhhCChHHHhhhcccC
Confidence 8 899999999999999999999998877554
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=376.21 Aligned_cols=386 Identities=19% Similarity=0.234 Sum_probs=303.3
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALS-QLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
..++.++|.+.++.+|+++|+++.++++||+||.+++.++|+.|. +.|+++||+|+++++|++++++++|||+++|+++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 103 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTV 103 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 468999999999999999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCC---CC------------C
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETC---DR------------A 162 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~------------~ 162 (430)
+|++|.++.+++.++++.++++++++++.....+....... ....++.++.... .. .
T Consensus 104 v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (560)
T PRK08751 104 VNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--------PVKQVITTGLGDMLGFPKAALVNFVVKYVKK 175 (560)
T ss_pred eccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--------CccEEEEechhhhcccccchhhhhhhhhhhc
Confidence 99999999999999999999999999887655544432211 1222332210000 00 0
Q ss_pred cccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC----CCC-CC
Q 048242 163 PLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG----MKE-GA 237 (430)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~----~~~-~~ 237 (430)
........+...+.+.+..............++++++++|||||||.||+|+++|.++...+.+....+. +.. ++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (560)
T PRK08751 176 LVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCE 255 (560)
T ss_pred cccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCc
Confidence 0000001122334444433222111223356789999999999999999999999999887776555443 233 45
Q ss_pred EEEeccCchhhhhhHH-HHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEE
Q 048242 238 VYLWTLPIFHGNGWCF-TWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNV 315 (430)
Q Consensus 238 ~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v 315 (430)
++++..|++|.+++.. .+.++..|++.++.. .+++..+++.+.++++|++..+|.++..+.+.......+ +++||.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-l~~lr~v 334 (560)
T PRK08751 256 VVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQID-FSSLKMT 334 (560)
T ss_pred eEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcc-hhhheee
Confidence 7788899999999864 455666777776664 578999999999999999999999999999876555555 8899999
Q ss_pred eecCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCC
Q 048242 316 NTGGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQP 394 (430)
Q Consensus 316 ~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~ 394 (430)
++||+++++.+.+.|+ .+++.+++.||+||+++.++.+... .....+++|+|++++ +++|+|++ +++
T Consensus 335 ~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~----------~~~~~~~vG~~~~~~-~v~i~d~~-~~~ 402 (560)
T PRK08751 335 LGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLT----------LKEYNGSIGLPIPST-DACIKDDA-GTV 402 (560)
T ss_pred eeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceeccccc----------ccccCCCcCccCCCc-eEEEECCC-CCC
Confidence 9999999999999998 4589999999999998765543321 012347899999999 89999976 899
Q ss_pred CCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 395 IPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 395 ~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
++.+ +.|||+++|++++.||+++++.+.+.|
T Consensus 403 ~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~ 433 (560)
T PRK08751 403 LAIG--EIGELCIKGPQVMKGYWKRPEETAKVM 433 (560)
T ss_pred CCCC--CceEEEEecCccchhhcCChhhhhhcc
Confidence 9988 899999999999999999999998877
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=376.22 Aligned_cols=395 Identities=22% Similarity=0.202 Sum_probs=306.6
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|++.++.+|+++|+.+.++.+||.||.+++.++|+.|.++|+++|++|+++++|+++++++++||+++|++++
T Consensus 32 ~~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 111 (567)
T PRK06178 32 ERPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHV 111 (567)
T ss_pred cccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCC--cc--------cccc
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRA--PL--------EYAL 168 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~--------~~~~ 168 (430)
|++|..+.+++.++++.++++++++++...+.+.+..... ....++.......... .. ....
T Consensus 112 ~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (567)
T PRK06178 112 PVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--------SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLA 183 (567)
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--------CcceEEEecccccccccccccccccccccccc
Confidence 9999999999999999999999999988766655443211 1223332221110000 00 0000
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh-hcCCCCCCEEEeccCchh
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL-TWGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~~~~~pl~h 247 (430)
..+...+.+...... .........++++++|+|||||||.||+|++||.++......... ......+|++++.+|++|
T Consensus 184 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 262 (567)
T PRK06178 184 AAGAIDLLPALRACT-APVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFW 262 (567)
T ss_pred ccccccHHHHhhccc-cccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHH
Confidence 111112211111111 111123356789999999999999999999999998776554433 356788999999999999
Q ss_pred hhhhH-HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeec--CCCCCH
Q 048242 248 GNGWC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTG--GSPPPP 324 (430)
Q Consensus 248 ~~gl~-~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~--G~~l~~ 324 (430)
.+|+. .++.++..|+++++.+++++..++..++++++|+++.+|..+..+.........+ +++++.+..+ ++++++
T Consensus 263 ~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~-l~~l~~~~~~~~~~~~~~ 341 (567)
T PRK06178 263 IAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYD-LSSLRQVRVVSFVKKLNP 341 (567)
T ss_pred HHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCC-cchheeeeeccccccCCH
Confidence 99986 5777788999999999899999999999999999999999999988765544445 7888886543 589999
Q ss_pred HHHHHHH-hcCcEEEe-eecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCce
Q 048242 325 PILLAMS-QKGFRVTH-VYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTI 402 (430)
Q Consensus 325 ~~~~~~~-~~~~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~ 402 (430)
++.+.++ .++..++. .||+||+++.++....... . ........+++|+|++|+ +++|+|++++++++.| +.
T Consensus 342 ~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~-~---~~~~~~~~~~vG~p~~g~-~v~v~d~~~~~~~~~g--~~ 414 (567)
T PRK06178 342 DYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQD-D---DFDLLSQPVFVGLPVPGT-EFKICDFETGELLPLG--AE 414 (567)
T ss_pred HHHHHHHHHhCCcccccccccccccccceecccccc-C---ccccccCCcccccccCCc-EEEEEcCCCCCcCCCC--Cc
Confidence 9999998 45777664 7999999766554321110 0 000012346799999999 9999997779999988 89
Q ss_pred eEEEEecCcccccccCCcccchHhhhCC
Q 048242 403 GEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 403 Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
|||+++|++++.|||++++.+.+.|.||
T Consensus 415 Gel~v~g~~v~~gY~~~~~~~~~~~~dg 442 (567)
T PRK06178 415 GEIVVRTPSLLKGYWNKPEATAEALRDG 442 (567)
T ss_pred eEEEEECCcccccccCChhhhhhcccCC
Confidence 9999999999999999999998887654
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=375.31 Aligned_cols=363 Identities=22% Similarity=0.256 Sum_probs=286.9
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSI-GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
.++.++|.+.+ .|+++|+++.+..+||+||.++++++|..|.++|+ ++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v 80 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLV 80 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEE
Confidence 46888887754 69999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.+++++++++++....+.+.. . ....++.+++. .+.+.
T Consensus 81 ~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~--------~~~~~i~~~~~----------------~~~~~ 134 (540)
T PRK13388 81 GLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--L--------PGVRVLDVDTP----------------AYAEL 134 (540)
T ss_pred EecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--c--------cCceEEEccch----------------hhhhh
Confidence 9999999999999999999999999887654433221 1 11223333221 12222
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH-HH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW-SL 257 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~-~~ 257 (430)
+...... .......++++++++|||||||.||+|.++|.++...+......+++..+|+++..+|++|.+++...+ .+
T Consensus 135 ~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~ 213 (540)
T PRK13388 135 VAAAGAL-TPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPA 213 (540)
T ss_pred hccccCc-CCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHH
Confidence 2211111 111235678999999999999999999999999998888888888999999999999999999987544 46
Q ss_pred HhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcE
Q 048242 258 AALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFR 336 (430)
Q Consensus 258 l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~ 336 (430)
+..|+++++.+.+++..+++.++++++|++..+|..+..+...+...... .++++.+ + |++++++..+++. .++++
T Consensus 214 l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~~~l~~~-~-G~~~~~~~~~~~~~~~~~~ 290 (540)
T PRK13388 214 VASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDA-DNPLRVA-F-GNEASPRDIAEFSRRFGCQ 290 (540)
T ss_pred HHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCcccc-ccceEEE-E-CCCCCHHHHHHHHHHhCCc
Confidence 77899988888889999999999999999999999999998765433222 4567743 3 5667778888876 67999
Q ss_pred EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceE-----------EeeCCCCCCCCCCCCceeEE
Q 048242 337 VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLD-----------VLDTKTNQPIPADGKTIGEV 405 (430)
Q Consensus 337 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~-----------v~d~~~~~~~~~~~~~~Gel 405 (430)
+++.||+||++.++..... ...+++|+|++++ ++. ++|.+ |+.+..+ ++.|||
T Consensus 291 l~~~YG~tE~~~~~~~~~~-------------~~~~~vG~p~~g~-~i~~~~~~~~~~~~~~d~~-g~~~~~~-~~~GEl 354 (540)
T PRK13388 291 VEDGYGSSEGAVIVVREPG-------------TPPGSIGRGAPGV-AIYNPETLTECAVARFDAH-GALLNAD-EAIGEL 354 (540)
T ss_pred eecccccccccceeecCCC-------------CCCCCCCCCCCCc-EEEcCCCCccccceeccCc-cccccCC-CcceEE
Confidence 9999999999766543210 1237899999987 542 34433 5555332 168999
Q ss_pred EEe-cCcccccccCCcccchHhhhCC
Q 048242 406 VMR-GNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 406 ~v~-g~~v~~gY~~~~~~t~~~f~dg 430 (430)
+++ |++++.||++|++++.+.|.+|
T Consensus 355 ~v~~g~~~~~gY~~~~~~t~~~~~~g 380 (540)
T PRK13388 355 VNTAGAGFFEGYYNNPEATAERMRHG 380 (540)
T ss_pred EEecCCcccccccCChHHHHHHhhcC
Confidence 998 9999999999999999888654
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=371.88 Aligned_cols=363 Identities=20% Similarity=0.192 Sum_probs=293.1
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQL-SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
..++.++|++.+. ++++++++.++++||.||.++++++|+.|.++ |++++++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~ 81 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVP 81 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 4578899988775 78999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|++|..+.+++.++++.+++++++++++....+.... . . ..++.++. ..+.+
T Consensus 82 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~-------~-~~~~~~~~----------------~~~~~ 134 (529)
T PRK07867 82 VGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---P-------G-VRVINVDS----------------PAWAD 134 (529)
T ss_pred EEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---c-------C-ceEEEecc----------------ccHHH
Confidence 99999999999999999999999999987655433321 1 1 12222221 12333
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TWS 256 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~~ 256 (430)
.+..............++++++++|||||||.||+|+++|+++..........++++.+|++++.+|++|.+++.. ++.
T Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~ 214 (529)
T PRK07867 135 ELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAV 214 (529)
T ss_pred HhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHH
Confidence 3332222111223456789999999999999999999999999888888888888999999999999999999875 555
Q ss_pred HHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcE
Q 048242 257 LAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFR 336 (430)
Q Consensus 257 ~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~ 336 (430)
++..|+++++.+.+++..+++.++++++|++..+|+.+..++......... .+++|. ++||+.+++...+..+.+|++
T Consensus 215 ~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~-~~~lr~-~~gg~~~~~~~~~~~~~~g~~ 292 (529)
T PRK07867 215 ALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDA-DNPLRI-VYGNEGAPGDIARFARRFGCV 292 (529)
T ss_pred HHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCccccc-ccceEE-EecCCCChHHHHHHHHHhCCc
Confidence 677888888888899999999999999999999999999998765433333 467885 458888887764444477999
Q ss_pred EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCc------------eeE
Q 048242 337 VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKT------------IGE 404 (430)
Q Consensus 337 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~------------~Ge 404 (430)
+++.||+||+++.+..+.. ...+++|.|.++ ++|+|++++++++.+ + .||
T Consensus 293 l~~~YG~TE~~~~~~~~~~-------------~~~~~~g~~~~~---~~i~~~~~~~~~~~g--~~~~~~~~~~~~~~Ge 354 (529)
T PRK07867 293 VVDGFGSTEGGVAITRTPD-------------TPPGALGPLPPG---VAIVDPDTGTECPPA--EDADGRLLNADEAIGE 354 (529)
T ss_pred EEEeecccccccccccCCC-------------CCCCCcCCCCCC---EEEEECCCCCCCCCC--ccccccccccCCcceE
Confidence 9999999998755442210 123678999997 567887668888887 6 899
Q ss_pred EEE-ecCcccccccCCcccchHhhhCC
Q 048242 405 VVM-RGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 405 l~v-~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
|++ +|++++.||+++++.+.+.|.+|
T Consensus 355 l~i~~g~~~~~gy~~~~~~~~~~~~~g 381 (529)
T PRK07867 355 LVNTAGPGGFEGYYNDPEADAERMRGG 381 (529)
T ss_pred EEEecCCcccccccCChHhhhhhhcCC
Confidence 999 99999999999999998887654
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=452.68 Aligned_cols=366 Identities=18% Similarity=0.203 Sum_probs=307.0
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|++.++.+|+++|+++.++++||+||.++++++|+.|.++|+++|++|++++++++++++++|||+++|++++
T Consensus 2002 ~~~~~~~~~~~a~~~p~~~A~~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~v 2081 (5163)
T PRK12316 2002 GPGVHQRIAEQAARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYV 2081 (5163)
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcCCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEEe
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.+++++++++.+....+... .....+.++... .+
T Consensus 2082 pld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~------------~~~~~~~~~~~~---------------~~--- 2131 (5163)
T PRK12316 2082 PLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP------------AGVARLPLDRDA---------------EW--- 2131 (5163)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc------------cccceEeccchh---------------hh---
Confidence 999999999999999999999999987654322100 111122221100 00
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
. ..+.........++++++|+|||||||+||||+++|+++.+.+.+....++++.+|+++...|++|..++..++.++
T Consensus 2132 -~-~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L 2209 (5163)
T PRK12316 2132 -A-DYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQWFHPL 2209 (5163)
T ss_pred -h-ccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHHHHHH
Confidence 0 00111112345789999999999999999999999999999999999999999999999999999999988899999
Q ss_pred hhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHh-c-C
Q 048242 259 ALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ-K-G 334 (430)
Q Consensus 259 ~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~-~-~ 334 (430)
+.|+++++.+ .+++..+++.++++++|+++++|++++.+.+....... ..+||.+++||+++++++.++|.+ + +
T Consensus 2210 ~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~lr~~~~gGe~l~~~~~~~~~~~~~~ 2287 (5163)
T PRK12316 2210 LNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR--PPAVRVYCFGGEAVPAASLRLAWEALRP 2287 (5163)
T ss_pred hCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcccC--CcceeEEEEecccCCHHHHHHHHHhCCC
Confidence 9999997765 36899999999999999999999999999876543332 458999999999999999999984 4 7
Q ss_pred cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccc
Q 048242 335 FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMK 414 (430)
Q Consensus 335 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~ 414 (430)
.++++.||+||++..++....... ........++|+|++++ +++|+|++ +++++.| ++|||+|+|+++++
T Consensus 2288 ~~l~n~YG~TE~~~~~~~~~~~~~------~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~g--~~GEl~i~G~~v~~ 2357 (5163)
T PRK12316 2288 VYLFNGYGPTEAVVTPLLWKCRPQ------DPCGAAYVPIGRALGNR-RAYILDAD-LNLLAPG--MAGELYLGGEGLAR 2357 (5163)
T ss_pred cEEEECccchhheeeeeeeecccc------cccCCCcCCcccccCCC-EEEEECCC-CCCCCCC--CeeEEEecchhhcc
Confidence 889999999999877665433211 00111235799999999 99999988 8999998 99999999999999
Q ss_pred cccCCcccchHhhh
Q 048242 415 GYLKNPKANEEAFA 428 (430)
Q Consensus 415 gY~~~~~~t~~~f~ 428 (430)
||||+|++|+++|.
T Consensus 2358 GY~~~p~~T~~~f~ 2371 (5163)
T PRK12316 2358 GYLNRPGLTAERFV 2371 (5163)
T ss_pred cccCChhhhhhhcc
Confidence 99999999999993
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=374.26 Aligned_cols=353 Identities=22% Similarity=0.271 Sum_probs=289.2
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
...++.+.|.+.++.+|+++|+++.++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 46789999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|++|.++.+++.++++.++++.++++++....+.... ..++.++.... ..
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------------~~~~~~~~~~~--------------~~-- 163 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------------DAVAVIDPATA--------------GA-- 163 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------------cceEEeccchh--------------hh--
Confidence 99999999999999999999999999887654433210 11222221100 00
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHH--HHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAY--LMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~--~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
.... ..+...++.++++|||||||.||+|+++|.... .........+++..+|++++.+|++|.+|+...+
T Consensus 164 ---~~~~----~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~ 236 (516)
T PRK13383 164 ---EESG----GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLM 236 (516)
T ss_pred ---hcCC----CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHH
Confidence 0000 011224566789999999999999999997432 1122233456788899999999999999998888
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC--CCCCCCceeEEeecCCCCCHHHHHHHH-h
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED--TILPLPHVVNVNTGGSPPPPPILLAMS-Q 332 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~--~~~~l~~lr~v~~~G~~l~~~~~~~~~-~ 332 (430)
.++..|+++++...+++..+++.++++++|.++++|.++..+....... ... ++++|.+++||+++++++.++|. .
T Consensus 237 ~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~~~~~ 315 (516)
T PRK13383 237 LTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNP-LPQLRVVMSSGDRLDPTLGQRFMDT 315 (516)
T ss_pred HHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCC-CCceEEEEECCCCCCHHHHHHHHHH
Confidence 8889999999888899999999999999999999999999998764321 223 78999999999999999999998 6
Q ss_pred cCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcc
Q 048242 333 KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMV 412 (430)
Q Consensus 333 ~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v 412 (430)
++..+++.||+||++..+..+... .....+++|+|++++ +++|+|++ +++++.+ +.|||+++|+.+
T Consensus 316 ~g~~v~~~YG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~g~~~ 381 (516)
T PRK13383 316 YGDILYNGYGSTEVGIGALATPAD----------LRDAPETVGKPVAGC-PVRILDRN-NRPVGPR--VTGRIFVGGELA 381 (516)
T ss_pred cCchhhhcccccccccceeccccc----------cccCCCcccCCCCCc-EEEEECCC-CCCCCCC--CceEEEEecCcc
Confidence 799999999999997655433211 112347899999999 99999987 8999988 899999999999
Q ss_pred cccccCCcc
Q 048242 413 MKGYLKNPK 421 (430)
Q Consensus 413 ~~gY~~~~~ 421 (430)
+.||++++.
T Consensus 382 ~~~Y~~~~~ 390 (516)
T PRK13383 382 GTRYTDGGG 390 (516)
T ss_pred cccccCCch
Confidence 999998764
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=379.87 Aligned_cols=383 Identities=17% Similarity=0.163 Sum_probs=286.9
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECC-----eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHh
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYES-----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGV 90 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 90 (430)
.|-.....++.++..+.+++++|+++.+ +++||+||.+++.++|+.|.++|+++||+|+++++|++++++++|||
T Consensus 80 ~wf~~~~~n~~~~~~~~~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~ 159 (652)
T TIGR01217 80 QWFPGARLNYAENLLRAAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLAT 159 (652)
T ss_pred EECCCCeeeHHHHHhccCCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3444444445555555567899998843 58999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChhhHHHHHhhcCceEEEecccc---------HHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCC
Q 048242 91 PMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY---------FALAEEALKIMEGKSEGLFKPPVLIVIGDETCDR 161 (430)
Q Consensus 91 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 161 (430)
+++|++++|++|.++.+++.+++++++++++|+++.. ...+.++....+ ....++.+.......
T Consensus 160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~ 232 (652)
T TIGR01217 160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELP-------TLRAVVHIPYLGPRE 232 (652)
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCC-------CccEEEEEeCCCCcc
Confidence 9999999999999999999999999999999998754 223333322222 334455554211000
Q ss_pred CcccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHH-HHHHHHHhhcCCCCCCEEE
Q 048242 162 APLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAY-LMSLNVVLTWGMKEGAVYL 240 (430)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~-~~~~~~~~~~~~~~~~~~~ 240 (430)
. ......+...|++++..............++++++|+|||||||.||||+++|.+++ .........++++.+|+++
T Consensus 233 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~ 310 (652)
T TIGR01217 233 T--EAPKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLF 310 (652)
T ss_pred c--ccccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEE
Confidence 0 000011234566665442211111123456899999999999999999999999865 3444555567889999999
Q ss_pred eccCchhhhhhHHHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCC--CCCCCCCCCceeE
Q 048242 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP--PEDTILPLPHVVN 314 (430)
Q Consensus 241 ~~~pl~h~~gl~~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~--~~~~~~~l~~lr~ 314 (430)
+..|+.|+.+ ..++.+++.|+++++++. .++..+++.++++++|++..+|.++..+.... .....+ +++||.
T Consensus 311 ~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~-l~sLr~ 388 (652)
T TIGR01217 311 YYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHD-LSALQC 388 (652)
T ss_pred EeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCC-hhheeE
Confidence 9999998754 335578889999999852 37889999999999999988888777765532 122345 899999
Q ss_pred EeecCCCCCHHHHHHHH-hcC--cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCC
Q 048242 315 VNTGGSPPPPPILLAMS-QKG--FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKT 391 (430)
Q Consensus 315 v~~~G~~l~~~~~~~~~-~~~--~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~ 391 (430)
+++||+++++++.++++ .++ +.+.+.||+||+++........ .....+++|.|.+|+ +++|+|++
T Consensus 389 i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~----------~~~~~g~~g~p~~g~-~v~ivd~~- 456 (652)
T TIGR01217 389 VASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPT----------LPVHIGEIQAPGLGT-AVQSWDPE- 456 (652)
T ss_pred EEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCC----------CCCcCCccCCCcCCC-ceEEECCC-
Confidence 99999999999999997 454 5678999999975433321110 011347899999999 99999988
Q ss_pred CCCCCCCCCceeEEEEecC--cccccccCCcccch
Q 048242 392 NQPIPADGKTIGEVVMRGN--MVMKGYLKNPKANE 424 (430)
Q Consensus 392 ~~~~~~~~~~~Gel~v~g~--~v~~gY~~~~~~t~ 424 (430)
|++++ | +.|||+++|+ +++.|||+|++.++
T Consensus 457 g~~~~-g--~~GEl~v~gp~p~~~~gy~~~~~~t~ 488 (652)
T TIGR01217 457 GKPVT-G--EVGELVCTNPMPSMPIRFWNDPDGSK 488 (652)
T ss_pred CCCCC-C--CccEEEEecCCCccccceeCCCccch
Confidence 88884 6 8999999996 68999999999764
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-47 Score=371.95 Aligned_cols=351 Identities=23% Similarity=0.329 Sum_probs=287.0
Q ss_pred HHHHhhCCCcceEEE--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccC
Q 048242 27 ERAATVHPTRKSVVY--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRL 104 (430)
Q Consensus 27 ~~~~~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~ 104 (430)
+.+++.+|+++|+.+ .+..+||.||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|++|..
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 81 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence 456788999999987 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcCCC
Q 048242 105 NPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDP 184 (430)
Q Consensus 105 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+.+++.++++.++++++++++..... ....+ .++++......
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~-----------------~~~~~---------------------~~~~~~~~~~~ 123 (488)
T PRK09088 82 SASELDALLQDAEPRLLLGDDAVAAG-----------------RTDVE---------------------DLAAFIASADA 123 (488)
T ss_pred CHHHHHHHHHhCCCCEEEEcchhhcc-----------------ccccc---------------------chhhhhhhccc
Confidence 99999999999999999997643210 00000 01111100000
Q ss_pred -CCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HHHHHhhcc
Q 048242 185 -EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TWSLAALCG 262 (430)
Q Consensus 185 -~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~~~l~~g~ 262 (430)
.........++++++++|||||||.||+|.++|+++...+........+..+|++++.+|++|.+++.. ++.++..|+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~ 203 (488)
T PRK09088 124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG 203 (488)
T ss_pred cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 000112345678999999999999999999999999888777777777889999999999999999885 445566788
Q ss_pred eEEEeCCCCHHHHHHHHH--hhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEee
Q 048242 263 TSVMLRQASAKAIYKAIA--EHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHV 340 (430)
Q Consensus 263 ~~v~~~~~~~~~~~~~l~--~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~~ 340 (430)
++++.+.+++..++..+. ++++|+++.+|.+++.+.......... +++||.+++||++++....+++.+.++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~ 282 (488)
T PRK09088 204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAA-LRHLTALFTGGAPHAAEDILGWLDDGIPMVDG 282 (488)
T ss_pred EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccc-cccceEEEecCCCCCHHHHHHHHHhCCceeee
Confidence 888888889999998886 489999999999999998776544445 78999999999999999988888779999999
Q ss_pred ecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCc
Q 048242 341 YGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420 (430)
Q Consensus 341 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~ 420 (430)
||+||+++........ .....+.+++|+|.+++ +++|+|++ +++++.+ +.|||+++|++++.||++++
T Consensus 283 YG~TE~~~~~~~~~~~--------~~~~~~~~~vG~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gY~~~~ 350 (488)
T PRK09088 283 FGMSEAGTVFGMSVDC--------DVIRAKAGAAGIPTPTV-QTRVVDDQ-GNDCPAG--VPGELLLRGPNLSPGYWRRP 350 (488)
T ss_pred ecccccccccccCCCc--------ccccccCCccccCCCCc-EEEEECCC-CCCCcCC--CceEEEEECCccchhhcCCh
Confidence 9999998654332111 00112447899999999 89999977 8999988 89999999999999999999
Q ss_pred ccchHhhh
Q 048242 421 KANEEAFA 428 (430)
Q Consensus 421 ~~t~~~f~ 428 (430)
+.+++.|.
T Consensus 351 ~~~~~~~~ 358 (488)
T PRK09088 351 QATARAFT 358 (488)
T ss_pred hhhhhhhc
Confidence 99887763
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=381.99 Aligned_cols=372 Identities=16% Similarity=0.187 Sum_probs=285.9
Q ss_pred HHHHHHHhhCCCcceEEECC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 24 WFLERAATVHPTRKSVVYES--------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 24 ~~l~~~~~~~p~~~a~~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
+.|++..+.+|+++|+++.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 179 ~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Ga 258 (728)
T PLN03052 179 CCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGC 258 (728)
T ss_pred HHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence 45666656789999999854 4799999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccH------HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccccc
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYF------ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALS 169 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (430)
+++|++|.++++++.+++++++++++|+++... .....+.... . ..++.+........ ....
T Consensus 259 v~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~--------~-~~~iv~~~~~~~~~---~~~~ 326 (728)
T PLN03052 259 VVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK--------A-PKAIVLPADGKSVR---VKLR 326 (728)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc--------C-CcEEEEeCCCCccc---cccc
Confidence 999999999999999999999999999987542 1122222111 1 22333322110000 0001
Q ss_pred CCccchhhhhhcCCC----CCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCc
Q 048242 170 KGVTEYEKLLETGDP----EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI 245 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl 245 (430)
.....|++++..... .........++++++|+|||||||+||||+++|.+++..+......++++.+|++++..++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l 406 (728)
T PLN03052 327 EGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNL 406 (728)
T ss_pred cCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCc
Confidence 123457776543211 1011112356899999999999999999999999987766666566788999999999999
Q ss_pred hhhhhhHHHHHHHhhcceEEEeCC-CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCH
Q 048242 246 FHGNGWCFTWSLAALCGTSVMLRQ-ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324 (430)
Q Consensus 246 ~h~~gl~~~~~~l~~g~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~ 324 (430)
.|+++....+.+++.|+++++++. +++..+++.++++++|++.++|++++.+.+.......+ +++||.++++|+++++
T Consensus 407 ~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~d-lssLr~i~s~Ge~l~~ 485 (728)
T PLN03052 407 GWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLD-WSSIRCFGSTGEASSV 485 (728)
T ss_pred HHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCC-hhheeEEEecCCCCCH
Confidence 999998878889999999999974 46678999999999999999999999998765444556 8999999999999999
Q ss_pred HHHHHHH-hcC-cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCce
Q 048242 325 PILLAMS-QKG-FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTI 402 (430)
Q Consensus 325 ~~~~~~~-~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~ 402 (430)
+...++. .++ .++.+.||+||+++.+...... .....+++|+|.+|+ +++|+|++ |++++.|..+.
T Consensus 486 ~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~----------~~~~~g~~g~p~~g~-~v~v~d~~-g~~v~~g~~~~ 553 (728)
T PLN03052 486 DDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLL----------QPQAFAAFSTPAMGC-KLFILDDS-GNPYPDDAPCT 553 (728)
T ss_pred HHHHHHHHhcCCCCeEeeccChhhCcccccCCCC----------CCCCCCccccCCCCc-eEEEECCC-CCCCCCCCCce
Confidence 9988776 445 5799999999997655432211 012347899999999 99999987 99998872126
Q ss_pred eEEEEecC--cccccccCCc
Q 048242 403 GEVVMRGN--MVMKGYLKNP 420 (430)
Q Consensus 403 Gel~v~g~--~v~~gY~~~~ 420 (430)
|||+++++ +...+|+++.
T Consensus 554 GEL~v~~~~~~~~~~~~~~~ 573 (728)
T PLN03052 554 GELALFPLMFGASSTLLNAD 573 (728)
T ss_pred EEEEEeCCCCCCCccccCch
Confidence 99999865 2334666653
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=371.73 Aligned_cols=362 Identities=21% Similarity=0.279 Sum_probs=301.6
Q ss_pred CHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeec
Q 048242 21 TPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCI 100 (430)
Q Consensus 21 t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l 100 (430)
++.+.|.+.++.+|+++|+.+.++++||+||.+++.++|+.|.+.|+++|++|+++++|+.++++++|||+++|++++|+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~ 80 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV 80 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhh
Q 048242 101 NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180 (430)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (430)
++.++.+++.++++..+++.++++.+...... . ..++.++.. .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------------~-~~~~~~~~~------------------~~~~~ 127 (502)
T TIGR01734 81 DTSIPSERIEMIIEAAGPELVIHTAELSIDAV--------------G-TQIITLSAL------------------EQAET 127 (502)
T ss_pred CCcChHHHHHHHHHhcCCCEEEeccccccccc--------------C-CceEEchHh------------------hhhhh
Confidence 99999999999999999999999876422111 1 112222110 01111
Q ss_pred cCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhh
Q 048242 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~ 260 (430)
...+ ........+++.++++|||||||.||+|.++|+++...+.+....+++..++++++..|++|..++..++.++..
T Consensus 128 ~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~ 206 (502)
T TIGR01734 128 SGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLAS 206 (502)
T ss_pred hcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHC
Confidence 1111 111123457889999999999999999999999999998888888889999999999999999999888999999
Q ss_pred cceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-Cc
Q 048242 261 CGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK-GF 335 (430)
Q Consensus 261 g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~-~~ 335 (430)
|+++++.++ .++..+++.+.+++++.+..+|.+++.++......... +++++.++++|+++++++.+++. .+ ++
T Consensus 207 G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~-~~~l~~~~~~G~~~~~~~~~~~~~~~~~~ 285 (502)
T TIGR01734 207 GGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQEN-YPHLTHFLFCGEELPVKTAKALLERFPKA 285 (502)
T ss_pred CCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccccccc-CCcccEEEEcCCcCCHHHHHHHHHHCCCc
Confidence 999998864 57899999999999999999999998887654434444 88999999999999999999998 55 89
Q ss_pred EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccccc
Q 048242 336 RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKG 415 (430)
Q Consensus 336 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~g 415 (430)
++++.||+||+++.++......+.. ......++|++.+++ +++|+|++ ++.++.+ +.|||+++|++++.|
T Consensus 286 ~~~~~yG~tE~~~~~~~~~~~~~~~------~~~~~~~vg~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~g~~~~~g 355 (502)
T TIGR01734 286 TIYNTYGPTEATVAVTSVKITQEIL------DQYPRLPIGFAKPDM-NLFIMDEE-GEPLPEG--EKGEIVIVGPSVSKG 355 (502)
T ss_pred EEEeCccCCcceEEEEEEEcccccc------ccCCccccccccCCC-EEEEECCC-CCCCCCC--CeeEEEEcccccccc
Confidence 9999999999976554432221100 011235799999999 99999998 8999988 899999999999999
Q ss_pred ccCCcccchHhh
Q 048242 416 YLKNPKANEEAF 427 (430)
Q Consensus 416 Y~~~~~~t~~~f 427 (430)
|+++++.+.+.|
T Consensus 356 y~~~~~~~~~~~ 367 (502)
T TIGR01734 356 YLNNPEKTAEAF 367 (502)
T ss_pred ccCCcccchHhh
Confidence 999999998876
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=448.52 Aligned_cols=369 Identities=18% Similarity=0.209 Sum_probs=310.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHh
Q 048242 11 PKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGV 90 (430)
Q Consensus 11 ~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 90 (430)
+.........++.++|+++++.+|+++|+++.++++||+||.++++++|+.|.++|+++|++|++++++++++++++||+
T Consensus 1122 ~~~~~~~~~~~l~~~~~~~a~~~p~~~Al~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lai 1201 (4334)
T PRK05691 1122 GQAPCAPAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAI 1201 (4334)
T ss_pred cCCCCCCccCCHHHHHHHHHHhCCCCeEEEECCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 33344445678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccC
Q 048242 91 PMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSK 170 (430)
Q Consensus 91 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (430)
+++|++++|++|.++.+++.++++.+++++++++......+... .....+.++....
T Consensus 1202 lkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~~~~~~~----------- 1258 (4334)
T PRK05691 1202 LKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA------------EGVSAIALDSLHL----------- 1258 (4334)
T ss_pred HHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc------------cCceEEeeccccc-----------
Confidence 99999999999999999999999999999999987654322110 0111222221100
Q ss_pred CccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhh
Q 048242 171 GVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~g 250 (430)
.............++++++++|||||||+||||+++|+++.+.+.+....++++.+++++...|++|..+
T Consensus 1259 ----------~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s 1328 (4334)
T PRK05691 1259 ----------DSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVS 1328 (4334)
T ss_pred ----------cccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHH
Confidence 0000111112346789999999999999999999999999999999888999999999999999999999
Q ss_pred hHHHHHHHhhcceEEEeC---CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHH
Q 048242 251 WCFTWSLAALCGTSVMLR---QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPIL 327 (430)
Q Consensus 251 l~~~~~~l~~g~~~v~~~---~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~ 327 (430)
+..++.+++.|+++++.+ .+++..+++.++++++|+++++|++++.+...... .. +++||.+++||+++++++.
T Consensus 1329 ~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--~~-~~~lr~~~~gGe~l~~~~~ 1405 (4334)
T PRK05691 1329 VWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA--AA-CTSLRRLFSGGEALPAELR 1405 (4334)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc--cc-CCcccEEEEeecCCCHHHH
Confidence 888999999999999985 36899999999999999999999999999875432 23 8899999999999999999
Q ss_pred HHHH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEE
Q 048242 328 LAMS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEV 405 (430)
Q Consensus 328 ~~~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel 405 (430)
++|. .+ +++++|.||+||++..++...... ......++|+|++++ +++|+|++ +++++.| ++|||
T Consensus 1406 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---------~~~~~~~iG~p~~~~-~~~i~d~~-~~~vp~G--~~GEL 1472 (4334)
T PRK05691 1406 NRVLQRLPQVQLHNRYGPTETAINVTHWQCQA---------EDGERSPIGRPLGNV-LCRVLDAE-LNLLPPG--VAGEL 1472 (4334)
T ss_pred HHHHHhCCCcEEEeCCCcChheeeeeeeeccc---------ccCCCCcccceeCCC-EEEEECCC-CCCCCCC--CceEE
Confidence 9998 44 789999999999987665432211 012346899999999 89999988 9999998 89999
Q ss_pred EEecCcccccccCCcccchHhhh
Q 048242 406 VMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 406 ~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
+|+|+++++||+++|++|+++|.
T Consensus 1473 ~i~G~~v~~GYl~~p~~t~~~f~ 1495 (4334)
T PRK05691 1473 CIGGAGLARGYLGRPALTAERFV 1495 (4334)
T ss_pred EecCcccchhhcCCccccHhhCC
Confidence 99999999999999999999983
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-47 Score=387.26 Aligned_cols=364 Identities=15% Similarity=0.199 Sum_probs=284.6
Q ss_pred CCCCHHHHHHHHHhhCCC-cceEEECC-eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 18 TALTPLWFLERAATVHPT-RKSVVYES-KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~-~~a~~~~~-~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
+..++.++|++.++++|+ ++|+.+.+ +++||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|+
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~ 280 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRR 280 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence 356899999999999998 57877633 7899999999999999999987 59999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHH--HHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCcc
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAE--EALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVT 173 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (430)
+++|+++.++.+++.++++.++++++|++.+...... ....... .. .++.+++...... ......
T Consensus 281 v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~-------~~-~~i~~~~~~~~~~-----~~~~~~ 347 (718)
T PRK08043 281 IPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLT-------QV-RWVYLEDLKDDVT-----TADKLW 347 (718)
T ss_pred cccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhc-------cc-cEEEhhhhhhhcc-----hhHHHH
Confidence 9999999999999999999999999999876543211 0000000 11 2222222100000 000000
Q ss_pred chhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH
Q 048242 174 EYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF 253 (430)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~ 253 (430)
...+.. .+. .......++|+++++|||||||.||||+++|.++.+.+.+....++++.+|++++.+|++|.+++..
T Consensus 348 ~~~~~~---~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~ 423 (718)
T PRK08043 348 IFAHLL---MPR-LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTV 423 (718)
T ss_pred HHHHHh---CCc-cccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHH
Confidence 000000 011 1112346789999999999999999999999999988888888888999999999999999999874
Q ss_pred -HHHHHhhcceEEEeCC-CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH
Q 048242 254 -TWSLAALCGTSVMLRQ-ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS 331 (430)
Q Consensus 254 -~~~~l~~g~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~ 331 (430)
++.++..|+++++.+. ++...+++.+.++++|+++++|+++..+.+.. ...+ +++||.+++||+++++++.+.++
T Consensus 424 ~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~-~~~lr~i~~gg~~l~~~~~~~~~ 500 (718)
T PRK08043 424 GLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYD-FARLRYVVAGAEKLQESTKQLWQ 500 (718)
T ss_pred HHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--Cccc-ccceEEEEEeCccCCHHHHHHHH
Confidence 6778889999998864 56778889999999999999999998876642 2234 88999999999999999999998
Q ss_pred -hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 332 -QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 332 -~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
.+|+++++.||+||+++.++..... ..+.+++|+|++++ +++|+|.+ +. + +.|||+++|+
T Consensus 501 ~~~g~~l~~~YG~TE~~~~~~~~~~~-----------~~~~~svG~p~pg~-~~~i~d~~-~~----~--~~Gel~v~g~ 561 (718)
T PRK08043 501 DKFGLRILEGYGVTECAPVVSINVPM-----------AAKPGTVGRILPGM-DARLLSVP-GI----E--QGGRLQLKGP 561 (718)
T ss_pred HHcCCCeecccCcccccceEEecCCc-----------ccCCCCCCCcCCCC-eeEEecCC-CC----C--CceEEEEecC
Confidence 6799999999999997666543211 12458999999999 99999876 42 3 5699999999
Q ss_pred cccccccC--Ccc
Q 048242 411 MVMKGYLK--NPK 421 (430)
Q Consensus 411 ~v~~gY~~--~~~ 421 (430)
+++.|||+ +++
T Consensus 562 ~v~~GY~~~e~~~ 574 (718)
T PRK08043 562 NIMNGYLRVEKPG 574 (718)
T ss_pred CccccccCCCCcc
Confidence 99999998 444
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=369.35 Aligned_cols=389 Identities=17% Similarity=0.226 Sum_probs=302.9
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
..++.++|++.++.+|+++|+++.++++||+||.++++++|..|.+ +|+++|++|+++++|++++++++|||+++|+++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 101 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIV 101 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 4579999999999999999999999999999999999999999984 899999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccc------------
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE------------ 165 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------ 165 (430)
+|++|..+.+++.++++.+++++++++.+....+.+..... ....++.............
T Consensus 102 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (560)
T PRK08974 102 VNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT--------PVKHVILTRMGDQLSTAKGTLVNFVVKYIKR 173 (560)
T ss_pred eccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc--------CcceEEEecccccccccccccccchhhhccc
Confidence 99999999999999999999999999876655444433221 1122222111000000000
Q ss_pred ---ccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc---CCCCCCEE
Q 048242 166 ---YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW---GMKEGAVY 239 (430)
Q Consensus 166 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~ 239 (430)
.........+.+.+..............++++++++|||||||.||+|.++|.++..++......+ ....++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (560)
T PRK08974 174 LVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELV 253 (560)
T ss_pred ccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEE
Confidence 000001112222222221111111234678999999999999999999999999987665443333 23456788
Q ss_pred EeccCchhhhhhHH-HHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEee
Q 048242 240 LWTLPIFHGNGWCF-TWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317 (430)
Q Consensus 240 ~~~~pl~h~~gl~~-~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~ 317 (430)
+..+|++|.+++.. .+..+..|+++++.. ..++..+++.++++++|++..+|++++.+.......... ++++|.+++
T Consensus 254 ~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~-~~~lr~~~~ 332 (560)
T PRK08974 254 VTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELD-FSSLKLSVG 332 (560)
T ss_pred EEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCC-ccceeEEEe
Confidence 89999999998764 556667788877663 568889999999999999999999999999876555555 789999999
Q ss_pred cCCCCCHHHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCC
Q 048242 318 GGSPPPPPILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIP 396 (430)
Q Consensus 318 ~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~ 396 (430)
||+++++.+.++|+ .+|+++++.||+||++..++.+..+. ....+++|.|++++ +++|+|++ +++++
T Consensus 333 gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~~~-~~~i~~~~-~~~~~ 400 (560)
T PRK08974 333 GGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDL----------DYYSGSIGLPVPST-EIKLVDDD-GNEVP 400 (560)
T ss_pred cCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCC----------cccCCccccCcCCC-EEEEECCC-CCCCC
Confidence 99999999999998 46999999999999987766553321 12347899999999 89999987 89999
Q ss_pred CCCCceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 397 ADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 397 ~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
.| +.|||+++|++++.||+++++.+.+.|.||
T Consensus 401 ~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g 432 (560)
T PRK08974 401 PG--EPGELWVKGPQVMLGYWQRPEATDEVIKDG 432 (560)
T ss_pred CC--CceEEEEecCCcchhhcCChhhhhhhhhcC
Confidence 88 899999999999999999999998887554
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=373.60 Aligned_cols=362 Identities=17% Similarity=0.148 Sum_probs=275.5
Q ss_pred HHHHHHHHHhhCCCcceEEECC----eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 22 PLWFLERAATVHPTRKSVVYES----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 22 ~~~~l~~~~~~~p~~~a~~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
+.+.|+++++++|+++|+++.+ +++||+||.++++++|+.|.++ ++||+|+|+++|++++++++|||+++|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~ 81 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV 81 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence 6788999999999999999876 8899999999999999999987 799999999999999999999999999986
Q ss_pred eecccc--------CChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccccc
Q 048242 98 NCINFR--------LNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALS 169 (430)
Q Consensus 98 ~~l~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (430)
+++ |. ...+++.++++.+++++++++......+.... . . +.+.+..
T Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~-------~----~~~~~~~----------- 135 (525)
T PRK05851 82 SIL-PGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVD---S-------S----VTVHDLA----------- 135 (525)
T ss_pred cCC-CCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhh---c-------c----ccccccc-----------
Confidence 543 32 22345567789999999999876544332211 0 0 0011100
Q ss_pred CCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCC-CCCEEEeccCchhh
Q 048242 170 KGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMK-EGAVYLWTLPIFHG 248 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~~~~~~pl~h~ 248 (430)
.... ..... ......++++++|+|||||||.||||+++|.++.+.+.+....+++. .+|++++.+|++|.
T Consensus 136 -------~~~~-~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 206 (525)
T PRK05851 136 -------TAAH-TNRSA-SLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHD 206 (525)
T ss_pred -------cccc-ccccc-cCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccC
Confidence 0000 00000 00123578999999999999999999999999999988888888888 89999999999999
Q ss_pred hhhHHHHHHHhhcceEEEeCC--C--CHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC-CCCCCCCceeEEeecCCCCC
Q 048242 249 NGWCFTWSLAALCGTSVMLRQ--A--SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE-DTILPLPHVVNVNTGGSPPP 323 (430)
Q Consensus 249 ~gl~~~~~~l~~g~~~v~~~~--~--~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~-~~~~~l~~lr~v~~~G~~l~ 323 (430)
+++...+.+++.|+++++.+. + ++..+++.+.++++|++..+|.++..+...... ...+ +++||.+++||++++
T Consensus 207 ~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~-l~~lr~~~~gG~~l~ 285 (525)
T PRK05851 207 MGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVD-LGALRVALNGGEPVD 285 (525)
T ss_pred ccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCC-HHHhheeEeccccCC
Confidence 999988889999999998762 4 578899999999999886655555555433221 2234 789999999999999
Q ss_pred HHHHHHHHh----cCc---EEEeeecCccccccccccccCCCC--CCCC--hhhhhhhccccCCccccccceEEeeCCCC
Q 048242 324 PPILLAMSQ----KGF---RVTHVYGLSEINGPATVCAWNPNW--DSLP--FEAQARLNARQGVKCMCLEGLDVLDTKTN 392 (430)
Q Consensus 324 ~~~~~~~~~----~~~---~v~~~YG~tE~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~vG~~~~~~~~~~v~d~~~~ 392 (430)
+++.++|.+ +|+ .+++.||+||++..++........ .... ........+++|+|++++ +++|+|++.+
T Consensus 286 ~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~i~d~~~~ 364 (525)
T PRK05851 286 CDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGM-EVRISPGDGA 364 (525)
T ss_pred HHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCc-EEEEECCCCC
Confidence 999988873 354 499999999997665543221100 0000 000112346899999999 9999998845
Q ss_pred CCCCCCCCceeEEEEecCcccccccCCcccch
Q 048242 393 QPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424 (430)
Q Consensus 393 ~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~ 424 (430)
.+++.| +.|||+++|++++.|||++++.+.
T Consensus 365 ~~~~~g--~~GEl~v~g~~~~~GY~~~~~~~~ 394 (525)
T PRK05851 365 AGVAGR--EIGEIEIRGASMMSGYLGQAPIDP 394 (525)
T ss_pred ccCCCC--CeEEEEEecCchhhccccCCccCC
Confidence 668887 899999999999999999988653
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=368.35 Aligned_cols=376 Identities=22% Similarity=0.276 Sum_probs=291.5
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
+....++.+.|.+.++.+|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|+
T Consensus 33 ~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~ 112 (600)
T PRK08279 33 PDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA 112 (600)
T ss_pred CCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|+++.++.+++.++++.++++++|++.+....+.+...... ....++..++.... ....+..+
T Consensus 113 ~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~ 178 (600)
T PRK08279 113 VVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLA-------RPPRLWVAGGDTLD-------DPEGYEDL 178 (600)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhc-------ccceEEEecCcccc-------ccccHHHH
Confidence 99999999999999999999999999999887666655443332 22223332221100 01112222
Q ss_pred hhhhhcCCCC-CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHH
Q 048242 176 EKLLETGDPE-FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFT 254 (430)
Q Consensus 176 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~ 254 (430)
.+........ .........+++++|+|||||||.||+|+++|.++.+++.+....++++.+|++++.+|++|.+++...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~ 258 (600)
T PRK08279 179 AAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVA 258 (600)
T ss_pred hhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHH
Confidence 2221111111 111133467899999999999999999999999999999888888999999999999999999998865
Q ss_pred H-HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-h
Q 048242 255 W-SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-Q 332 (430)
Q Consensus 255 ~-~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~ 332 (430)
+ .++..|+++++.+.+++..+++.++++++|++.++|++++.++......... ..++|.+ +|+++++++.+++. .
T Consensus 259 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~-~~~l~~~--~g~~l~~~~~~~~~~~ 335 (600)
T PRK08279 259 WSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDR-DHRLRLM--IGNGLRPDIWDEFQQR 335 (600)
T ss_pred HHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcccc-CcceeEE--ecCCCCHHHHHHHHHH
Confidence 4 4566778887778899999999999999999999999999998865544433 5677764 47789999999998 5
Q ss_pred cCc-EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccc----cccce---------EEeeCCCC--CCCC
Q 048242 333 KGF-RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCM----CLEGL---------DVLDTKTN--QPIP 396 (430)
Q Consensus 333 ~~~-~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~----~~~~~---------~v~d~~~~--~~~~ 396 (430)
++. .+++.||+||++..+.. .. ...+++|++.+ +. .+ .|.+.+ + ..++
T Consensus 336 ~~~~~l~~~YG~tE~~~~~~~-~~-------------~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~~~-~~~~~~~ 399 (600)
T PRK08279 336 FGIPRILEFYAASEGNVGFIN-VF-------------NFDGTVGRVPLWLAHPY-AIVKYDVDTGEPVRDAD-GRCIKVK 399 (600)
T ss_pred hCcceeeeeecccccceeecc-cC-------------CCCcccccccccccccc-eeeeeccCcCceeeCCC-CccccCC
Confidence 665 59999999998643321 11 12256676555 33 22 233333 2 2456
Q ss_pred CCCCceeEEE--EecCcccccccCCcccchHhh
Q 048242 397 ADGKTIGEVV--MRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 397 ~~~~~~Gel~--v~g~~v~~gY~~~~~~t~~~f 427 (430)
.+ +.|||+ ++|++++.|| ++++.|.+.|
T Consensus 400 ~g--~~Gel~~~i~~~~~~~GY-~~~~~t~~~~ 429 (600)
T PRK08279 400 PG--EVGLLIGRITDRGPFDGY-TDPEASEKKI 429 (600)
T ss_pred CC--CceeEEEEecCccccccc-CCchhhHHHH
Confidence 66 889998 7899999999 9999888776
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=363.77 Aligned_cols=363 Identities=19% Similarity=0.262 Sum_probs=301.2
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
+++.++|++.++.+|+++++...+..+||+||.++++++|..|.++|+++|++|+++++|+.++++++|||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~ 81 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP 81 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhh
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL 179 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
+++.++.+++.++++..++++++++.+.... . .....+..++ +.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~------------------~~~~~ 128 (503)
T PRK04813 82 VDVSSPAERIEMIIEVAKPSLIIATEELPLE-------I--------LGIPVITLDE------------------LKDIF 128 (503)
T ss_pred CCCCChHHHHHHHHHhcCCCEEEeccccccc-------c--------cCCcEEehHH------------------hhhhh
Confidence 9999999999999999999999998754100 0 0111111111 11111
Q ss_pred hcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHh
Q 048242 180 ETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~ 259 (430)
.. ...........++++++++|||||||.||+|.++|+++...+.+....+++..++++++..|++|..++...+.++.
T Consensus 129 ~~-~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 207 (503)
T PRK04813 129 AT-GNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLA 207 (503)
T ss_pred hc-cccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHh
Confidence 00 01111112346788999999999999999999999999988888888888999999999999999999888888899
Q ss_pred hcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-C
Q 048242 260 LCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK-G 334 (430)
Q Consensus 260 ~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~-~ 334 (430)
.|+++++.+. .++..+++.++++++|+++.+|++++.+.........+ ++++|.++++|+++++.+.++++ .+ +
T Consensus 208 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~-~~~l~~i~~~G~~l~~~~~~~~~~~~~~ 286 (503)
T PRK04813 208 SGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEH-LPNLTHFLFCGEELPHKTAKKLLERFPS 286 (503)
T ss_pred cCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCccc-CCCceEEEEecCcCCHHHHHHHHHHCCC
Confidence 9999998865 58899999999999999999999998877655444445 89999999999999999999998 55 7
Q ss_pred cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccc
Q 048242 335 FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMK 414 (430)
Q Consensus 335 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~ 414 (430)
..+++.||+||++..++.....+. ........++|++.+++ +++|+|++ +.+++.+ +.|||+++|++++.
T Consensus 287 ~~~~~~yG~tE~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~ 356 (503)
T PRK04813 287 ATIYNTYGPTEATVAVTSIEITDE------MLDQYKRLPIGYAKPDS-PLLIIDEE-GTKLPDG--EQGEIVISGPSVSK 356 (503)
T ss_pred ceEEeCcccchheeEEEEEEeccc------ccccCCCCcccccCCCC-EEEEECCC-CCCCCCC--CceEEEEecccccc
Confidence 899999999999765544332211 01112346799999999 89999987 9999988 88999999999999
Q ss_pred cccCCcccchHhh
Q 048242 415 GYLKNPKANEEAF 427 (430)
Q Consensus 415 gY~~~~~~t~~~f 427 (430)
|||++++.+...|
T Consensus 357 gy~~~~~~~~~~~ 369 (503)
T PRK04813 357 GYLNNPEKTAEAF 369 (503)
T ss_pred ccCCChhHhHHhh
Confidence 9999999998887
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=359.84 Aligned_cols=358 Identities=21% Similarity=0.293 Sum_probs=280.0
Q ss_pred HHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCC
Q 048242 28 RAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLN 105 (430)
Q Consensus 28 ~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~ 105 (430)
.+++.+|+++|+++. +.++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|+++.++
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~ 84 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLT 84 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCC
Confidence 456789999999874 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcCCCC
Q 048242 106 PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPE 185 (430)
Q Consensus 106 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
++++.++++.+++++++++............ .....+.+.... .....+++......+.
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 143 (501)
T PRK13390 85 APEADYIVGDSGARVLVASAALDGLAAKVGA----------DLPLRLSFGGEI-----------DGFGSFEAALAGAGPR 143 (501)
T ss_pred HHHHHHHHHhcCCcEEEEcchhhhHHHHhhh----------ccceEEEecCcc-----------cccccHHHHhcccCCC
Confidence 9999999999999999998754332221110 111122222110 0112233322211110
Q ss_pred CCCCCCCCCCCeeEEEeCCCCCCCCceEEe--chHHHHHHH----HHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHh
Q 048242 186 FAWKPPRDEWQSIALGYTSGTTANPKGVLV--SHRAAYLMS----LNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259 (430)
Q Consensus 186 ~~~~~~~~~~~~~~i~~TSGttG~pK~v~~--t~~~l~~~~----~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~ 259 (430)
.....+.++|+|||||||.||+|++ +|.++.... ......+.+..++++++.+|++|.+++...+..+.
T Consensus 144 -----~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~ 218 (501)
T PRK13390 144 -----LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA 218 (501)
T ss_pred -----CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHh
Confidence 1122357999999999999999996 455544321 12234567888999999999999999876556667
Q ss_pred hcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcE
Q 048242 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFR 336 (430)
Q Consensus 260 ~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~ 336 (430)
.|+++++.+.+++..+++.|+++++|+++++|+++..+.+.... ...+ ++++|.++.+|+++++++.+.++ .++.+
T Consensus 219 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~ 297 (501)
T PRK13390 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYD-VSSLRAVIHAAAPCPVDVKHAMIDWLGPI 297 (501)
T ss_pred cCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCC-hhhhheEEEcCCCCCHHHHHHHHHhcCCc
Confidence 89999988889999999999999999999999999999875432 2234 78999999999999999999998 56899
Q ss_pred EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccc
Q 048242 337 VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGY 416 (430)
Q Consensus 337 v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY 416 (430)
+++.||+||+++++..... ......+++|+|+++ +++|+|++ +++++.| ++|||+++|++++.||
T Consensus 298 ~~~~YG~tE~~~~~~~~~~----------~~~~~~~~~G~~~~g--~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy 362 (501)
T PRK13390 298 VYEYYSSTEAHGMTFIDSP----------DWLAHPGSVGRSVLG--DLHICDDD-GNELPAG--RIGTVYFERDRLPFRY 362 (501)
T ss_pred eeeeecccccCceEEecch----------hhccCCCCcCCcccc--eEEEECCC-CCCCCCC--CceEEEEecCCccccc
Confidence 9999999999765433211 111234789999998 48999977 9999988 8999999999999999
Q ss_pred cCCcccchHhh
Q 048242 417 LKNPKANEEAF 427 (430)
Q Consensus 417 ~~~~~~t~~~f 427 (430)
+++++.|.+.|
T Consensus 363 ~~~~~~t~~~~ 373 (501)
T PRK13390 363 LNDPEKTAAAQ 373 (501)
T ss_pred cCChhhhHHhh
Confidence 99999998876
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=366.59 Aligned_cols=374 Identities=20% Similarity=0.266 Sum_probs=278.0
Q ss_pred CHHHHHHHHHhhCCCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhh
Q 048242 21 TPLWFLERAATVHPTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVP 91 (430)
Q Consensus 21 t~~~~l~~~~~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 91 (430)
++.++|++.+..+|+++|+++.+ +++||+||..++.++|+.|.+.| ++||+|+++++|++++++++|||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 57889999999999999998632 78999999999999999999999 689999999999999999999999
Q ss_pred hcCCeeeeccc---cCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccc
Q 048242 92 MTGAVLNCINF---RLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYAL 168 (430)
Q Consensus 92 ~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (430)
++|++++|+++ ..+.+++.++++.+++++++++.+....+.+....... .....++.++...
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---------- 145 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPG-----QSAPPVIEVDLLD---------- 145 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhccc-----ccccceEeecccc----------
Confidence 99999999997 45788999999999999999998766555443221110 0111222222110
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc-C-----CCCCCEEEec
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW-G-----MKEGAVYLWT 242 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~-~-----~~~~~~~~~~ 242 (430)
+ .... . .......++++++|+|||||||.||||+++|.++++++......+ . ...++++++.
T Consensus 146 ------~---~~~~-~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (578)
T PRK05850 146 ------L---DSPR-G--SDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSW 213 (578)
T ss_pred ------c---ccCC-c--cccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEE
Confidence 0 0000 0 011234568999999999999999999999999988766554332 2 3567899999
Q ss_pred cCchhhhhhHH-HHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHH-HHHHHcCCCC---CCCCCCCcee
Q 048242 243 LPIFHGNGWCF-TWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIV-LNSIVNAPPE---DTILPLPHVV 313 (430)
Q Consensus 243 ~pl~h~~gl~~-~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~-l~~l~~~~~~---~~~~~l~~lr 313 (430)
+|++|.+|+.. .+.+++.|+++++.+. .++..+++.+.+++++++. +|.+ +..+...... ...+ ++++|
T Consensus 214 ~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~-~~~lr 291 (578)
T PRK05850 214 LPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFSA-APNFAFELAVRKTSDDDMAGLD-LGGVL 291 (578)
T ss_pred CCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEEe-CCcHHHHHHHHhcchhhhcCcc-hhhhe
Confidence 99999999874 7778889999998864 2789999999999998654 5554 4444332111 1234 78999
Q ss_pred EEeecCCCCCHHHHHHHH-hc---C---cEEEeeecCccccccccccccCCCCCC--CChhhh------------hhhcc
Q 048242 314 NVNTGGSPPPPPILLAMS-QK---G---FRVTHVYGLSEINGPATVCAWNPNWDS--LPFEAQ------------ARLNA 372 (430)
Q Consensus 314 ~v~~~G~~l~~~~~~~~~-~~---~---~~v~~~YG~tE~~~~~~~~~~~~~~~~--~~~~~~------------~~~~~ 372 (430)
.++.||+++++++.++|. .+ + ..+++.||+||++..+........... ...... .....
T Consensus 292 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~ 371 (578)
T PRK05850 292 GIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLV 371 (578)
T ss_pred eEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEE
Confidence 999999999999999987 44 3 368999999998755543322110000 000000 00112
Q ss_pred ccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 373 RQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 373 ~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
++|.|. +. +++|+|++++++++.| +.|||+++|++++.|||++++.|++.|.
T Consensus 372 ~~g~p~-~~-~~~ivd~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~ 423 (578)
T PRK05850 372 SYGSPR-SP-TVRIVDPDTCIECPAG--TVGEIWVHGDNVAAGYWQKPEETERTFG 423 (578)
T ss_pred eccCCC-CC-EEEEEcCCCCcCCCCC--CEEEEEEecCcccccccCChhhhHHHhh
Confidence 456654 45 7999998778899988 8999999999999999999999999884
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=356.99 Aligned_cols=336 Identities=22% Similarity=0.283 Sum_probs=278.6
Q ss_pred HhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhH
Q 048242 30 ATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNV 109 (430)
Q Consensus 30 ~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l 109 (430)
.+..++++|+++.++++||+||.++++++|..|. ++|+|+++++|++++++++|||+++|++++|++|..+.+++
T Consensus 10 ~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l 84 (471)
T PRK07787 10 AAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAER 84 (471)
T ss_pred hcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHH
Confidence 4556789999999999999999999999999995 46899999999999999999999999999999999999999
Q ss_pred HHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcCCCCCCCC
Q 048242 110 AIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWK 189 (430)
Q Consensus 110 ~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (430)
.++++++++++++++.+... . ..... .+.... ..+ ...
T Consensus 85 ~~~l~~~~~~~il~~~~~~~---------~-------~~~~~-~~~~~~--------------~~~-----------~~~ 122 (471)
T PRK07787 85 RHILADSGAQAWLGPAPDDP---------A-------GLPHV-PVRLHA--------------RSW-----------HRY 122 (471)
T ss_pred HHHHHhcCCCEEEecCCccc---------c-------cccce-eeeccc--------------ccc-----------ccC
Confidence 99999999999999763100 0 00100 000000 000 000
Q ss_pred CCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HHHHHhhcceEEEeC
Q 048242 190 PPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TWSLAALCGTSVMLR 268 (430)
Q Consensus 190 ~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~~ 268 (430)
....++++++++|||||||.||+|.++|.++...+......+++..++++++.+|++|.+|+.. ++.++..|+++++.+
T Consensus 123 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 202 (471)
T PRK07787 123 PEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTG 202 (471)
T ss_pred CCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecC
Confidence 1235689999999999999999999999999988888888888999999999999999999885 777788999999888
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCcccc
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEIN 347 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~ 347 (430)
.+++..+++.++ +++|+++++|.++..+.+..... .. ++++|.++.||+++++.+.++++ .++.++++.||+||++
T Consensus 203 ~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~-~~-l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~ 279 (471)
T PRK07787 203 RPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA-RA-LRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETL 279 (471)
T ss_pred CCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc-cc-ccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccC
Confidence 899999999999 99999999999999998754322 23 78999999999999999999998 5699999999999997
Q ss_pred ccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 348 GPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
..++..... ....+++|+|++++ +++|+|++ +++++..+++.|||+++|++++.||+++++.|.+.|
T Consensus 280 ~~~~~~~~~-----------~~~~~~vG~~~~g~-~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~ 346 (471)
T PRK07787 280 ITLSTRADG-----------ERRPGWVGLPLAGV-ETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAF 346 (471)
T ss_pred cceecCCCC-----------cccCCcccccCCCc-EEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhcc
Confidence 544332111 12347899999999 99999988 888874322489999999999999999999999888
Q ss_pred h
Q 048242 428 A 428 (430)
Q Consensus 428 ~ 428 (430)
.
T Consensus 347 ~ 347 (471)
T PRK07787 347 T 347 (471)
T ss_pred c
Confidence 4
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=357.26 Aligned_cols=375 Identities=22% Similarity=0.291 Sum_probs=295.9
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
.++.++|++.++++|+++|+.+.++.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~ 82 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVN 82 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhh
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL 179 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
+++.++.+++.++++.+++++++++......+.+...... ....++.+++..... ...+...+.+.+
T Consensus 83 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 149 (533)
T PRK07798 83 VNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLP-------KLRTLVVVEDGSGND------LLPGAVDYEDAL 149 (533)
T ss_pred cCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCC-------CccEEEEecCCcccc------cCCccccHHHHH
Confidence 9999999999999999999999999876665555432222 344566665432110 111344666666
Q ss_pred hcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc---------CC------CCCCEEEeccC
Q 048242 180 ETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW---------GM------KEGAVYLWTLP 244 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~---------~~------~~~~~~~~~~p 244 (430)
........ ......+.++++|||||||.||+|+++|.++..........+ .+ ..+++++...|
T Consensus 150 ~~~~~~~~--~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 227 (533)
T PRK07798 150 AAGSPERD--FGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPP 227 (533)
T ss_pred hccCCcCC--CCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecc
Confidence 54332221 112234557899999999999999999999876544322211 11 46788999999
Q ss_pred chhhhhhHHHHHHHhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHH-HHcCCC-CCCCCCCCceeEEeecCC
Q 048242 245 IFHGNGWCFTWSLAALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNS-IVNAPP-EDTILPLPHVVNVNTGGS 320 (430)
Q Consensus 245 l~h~~gl~~~~~~l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~-l~~~~~-~~~~~~l~~lr~v~~~G~ 320 (430)
++|..++...+.++..|+++++.+ .+++..+++.++++++|++..+|..+.. +..... ....+ ++++|.+++||+
T Consensus 228 l~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~i~~gG~ 306 (533)
T PRK07798 228 LMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYD-LSSLFAIASGGA 306 (533)
T ss_pred hhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCC-CCceEEEEECCC
Confidence 999999998999999999999998 7899999999999999999999876543 333222 22334 789999999999
Q ss_pred CCCHHHHHHHH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccC--CccccccceEEeeCCCCCCCC
Q 048242 321 PPPPPILLAMS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQG--VKCMCLEGLDVLDTKTNQPIP 396 (430)
Q Consensus 321 ~l~~~~~~~~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG--~~~~~~~~~~v~d~~~~~~~~ 396 (430)
++++++.++++ .+ +..+++.||+||++.......... ....| ++.++. .++|+|++ +++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-------------~~~~g~~~~~~~~-~~~i~~~~-~~~~~ 371 (533)
T PRK07798 307 LFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG-------------AVHTGGPRFTIGP-RTVVLDED-GNPVE 371 (533)
T ss_pred CCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC-------------CccCCCCccCCCc-eEEEECCC-CCCCC
Confidence 99999999998 45 889999999999865444321110 02233 788888 89999988 88888
Q ss_pred CCCCce--eEEEEecCcccccccCCcccchHhhh
Q 048242 397 ADGKTI--GEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 397 ~~~~~~--Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
.| +. |+|+ +++.++.|||++++.+.+.|.
T Consensus 372 ~g--~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~ 402 (533)
T PRK07798 372 PG--SGEIGWIA-RRGHIPLGYYKDPEKTAETFP 402 (533)
T ss_pred CC--CCCeeEEE-eecCccccccCChhhhHHhhc
Confidence 87 55 6665 566899999999999998884
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=356.11 Aligned_cols=366 Identities=22% Similarity=0.309 Sum_probs=292.4
Q ss_pred HHHHHhhCCCcceEEE--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeecccc
Q 048242 26 LERAATVHPTRKSVVY--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFR 103 (430)
Q Consensus 26 l~~~~~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~ 103 (430)
.+..++++|+++|+++ .++.+||.||.+++.++|+.|.++|+++|++|+++++|++++++++|||+++|++++++++.
T Consensus 3 ~~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 3 PGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 4567888999999987 46889999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcCC
Q 048242 104 LNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGD 183 (430)
Q Consensus 104 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (430)
++.+++.++++.++++.++++........+...... .....+.+++... ......+.+......
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 146 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCP-------GVRHRLVLDGDGE---------LEGFVGYAEAVAGLP 146 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCC-------CceEEEEecCCCC---------CcccccHHHHhcCCC
Confidence 999999999999999999999877655544433322 2233444432110 012233444332211
Q ss_pred CCCCCCCCCCCCCeeEEEeCCCCCCCCceEEe--chHHHHH---HHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 184 PEFAWKPPRDEWQSIALGYTSGTTANPKGVLV--SHRAAYL---MSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~--t~~~l~~---~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
.. .....++.+.++|||||||.||+|.+ +|.++.. ........+++..++++++.+|++|.+++...+.++
T Consensus 147 ~~----~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~ 222 (511)
T PRK13391 147 AT----PIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVI 222 (511)
T ss_pred CC----CCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 11 11234567899999999999999995 4655532 223344556778899999999999999998888889
Q ss_pred hhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCCCHHHHHHHH-hcCc
Q 048242 259 ALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPPPPPILLAMS-QKGF 335 (430)
Q Consensus 259 ~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~ 335 (430)
..|+++++.+.+++..+++.++++++|++.++|+++..+.+.... ...+ ++++|.+++||+++++++.++++ .+|.
T Consensus 223 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~-~~~l~~~~~gg~~~~~~~~~~~~~~~g~ 301 (511)
T PRK13391 223 RLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYD-LSSLEVAIHAAAPCPPQVKEQMIDWWGP 301 (511)
T ss_pred HcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCC-ccceeEEEEccCCCCHHHHHHHHHHcCC
Confidence 999999999889999999999999999999999999988865432 2334 78999999999999999999998 5698
Q ss_pred EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccccc
Q 048242 336 RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKG 415 (430)
Q Consensus 336 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~g 415 (430)
.+++.||+||+++.+...... .....+++|+|+++ .++|+|++ +++++.| +.|||+++|+ ++.|
T Consensus 302 ~v~~~YG~tE~~~~~~~~~~~----------~~~~~~~vG~~~~g--~~~i~d~~-~~~~~~g--~~Gel~~~g~-~~~g 365 (511)
T PRK13391 302 IIHEYYAATEGLGFTACDSEE----------WLAHPGTVGRAMFG--DLHILDDD-GAELPPG--EPGTIWFEGG-RPFE 365 (511)
T ss_pred ceeeeeccccccceEEecCcc----------ccccCCCcCCcccc--eEEEECCC-CCCCCCC--CceEEEEecC-cceE
Confidence 999999999998655432111 11234789999999 48999977 9999888 8999999999 8999
Q ss_pred ccCCcccchHhhh
Q 048242 416 YLKNPKANEEAFA 428 (430)
Q Consensus 416 Y~~~~~~t~~~f~ 428 (430)
||++++.+.+.|.
T Consensus 366 y~~~~~~~~~~~~ 378 (511)
T PRK13391 366 YLNDPAKTAEARH 378 (511)
T ss_pred EcCChhHhHHhhc
Confidence 9999999988773
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=352.33 Aligned_cols=364 Identities=22% Similarity=0.299 Sum_probs=285.7
Q ss_pred ceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhc
Q 048242 37 KSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHA 116 (430)
Q Consensus 37 ~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~ 116 (430)
.|++..++.+||.||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|+++++++|..+.+++.++++.+
T Consensus 3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCC-----cccccccCCccchhhhhhcCCCCCCCCCC
Q 048242 117 EAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRA-----PLEYALSKGVTEYEKLLETGDPEFAWKPP 191 (430)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (430)
+++.++++.+....+.+... ....++.......... ............+++....... ...
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 148 (509)
T PRK12406 83 GARVLIAHADLLHGLASALP----------AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP----YDG 148 (509)
T ss_pred CCcEEEEccchhhhhhhhhh----------cccceeecccccccccccccccccccCCCCccCHHHHhcccCc----cCC
Confidence 99999998876554432211 1111221111100000 0000112233455554432211 123
Q ss_pred CCCCCeeEEEeCCCCCCCCceEEechHH---HHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC
Q 048242 192 RDEWQSIALGYTSGTTANPKGVLVSHRA---AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR 268 (430)
Q Consensus 192 ~~~~~~~~i~~TSGttG~pK~v~~t~~~---l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~ 268 (430)
...+++++++|||||||.||+|.++|.. +..........+++..++++++..|++|..+....+.++..|+++++.+
T Consensus 149 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 228 (509)
T PRK12406 149 PPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQP 228 (509)
T ss_pred CCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEcc
Confidence 3568999999999999999999987654 3343444455677889999999999999988887777888899999988
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCCCHHHHHHHHh-cCcEEEeeecCcc
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPPPPPILLAMSQ-KGFRVTHVYGLSE 345 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~~~~~-~~~~v~~~YG~tE 345 (430)
.+++..+++.++++++|+++++|+++..++..... ...+ ++++|.++.||+++++++.+++++ +++.+++.||+||
T Consensus 229 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 307 (509)
T PRK12406 229 RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYD-VSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTE 307 (509)
T ss_pred CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCC-CCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccc
Confidence 88999999999999999999999999999875432 2334 789999999999999999999984 5899999999999
Q ss_pred ccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccc-cccCCcccch
Q 048242 346 INGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMK-GYLKNPKANE 424 (430)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~-gY~~~~~~t~ 424 (430)
++.++..+... .....+++|++++++ +++|+|++ +++++.| +.|||+++|++++. ||+++++.+.
T Consensus 308 ~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~~~y~~~~~~~~ 373 (509)
T PRK12406 308 SGAVTFATSED----------ALSHPGTVGKAAPGA-ELRFVDED-GRPLPQG--EIGEIYSRIAGNPDFTYHNKPEKRA 373 (509)
T ss_pred cCceEecCccc----------ccccCCCcCccCCCc-EEEEECCC-CCCCCCC--CceEEEEECCccccccccCCchhcc
Confidence 98755433211 112347899999999 89999987 8999988 89999999999875 9999999887
Q ss_pred HhhhC
Q 048242 425 EAFAN 429 (430)
Q Consensus 425 ~~f~d 429 (430)
..+.|
T Consensus 374 ~~~~~ 378 (509)
T PRK12406 374 EIDRG 378 (509)
T ss_pred cccCC
Confidence 66544
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=345.34 Aligned_cols=338 Identities=23% Similarity=0.271 Sum_probs=279.6
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 47 TWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 47 Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCC
Q 048242 126 QYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSG 205 (430)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 205 (430)
+....+... ....+.+.... ...................+++++++||||
T Consensus 81 ~~~~~~~~~-------------~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG 130 (408)
T TIGR01733 81 ALASRLAGL-------------VLPIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSG 130 (408)
T ss_pred chhhhcccc-------------CCceEEechhh-----------------hhhcccccccccccCCCCCCCcEEEEEcCC
Confidence 765433221 11122221110 000000000000111135789999999999
Q ss_pred CCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCC---HHHHHHHHHhh
Q 048242 206 TTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQAS---AKAIYKAIAEH 282 (430)
Q Consensus 206 ttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~---~~~~~~~l~~~ 282 (430)
|||.||+|.++|+++...+......+.+..+|++++..|++|.+++...+.++..|+++++.+... +..+.+.++++
T Consensus 131 TtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~ 210 (408)
T TIGR01733 131 STGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEH 210 (408)
T ss_pred CCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHc
Confidence 999999999999999999888888889999999999999999999998999999999999987543 58899999999
Q ss_pred CceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcC-cEEEeeecCccccccccccccCCCCC
Q 048242 283 GVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKG-FRVTHVYGLSEINGPATVCAWNPNWD 360 (430)
Q Consensus 283 ~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~ 360 (430)
++|.+.++|.+++.+.+... .. +++||.++.+|+++++++.++++ .++ +.+++.||+||+++.+..........
T Consensus 211 ~~t~l~~~p~~~~~l~~~~~---~~-~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~ 286 (408)
T TIGR01733 211 PVTVLNLTPSLLALLAAALP---PA-LASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDA 286 (408)
T ss_pred CceEEEeCHHHHHHHHHhhh---hc-ccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCcccc
Confidence 99999999999999998765 33 88999999999999999999998 565 89999999999987775433221110
Q ss_pred CCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 361 ~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
. .. +..++|+|++++ +++|+|++ +++++.| +.|||+++|++++.||++++++|.+.|.
T Consensus 287 ~-----~~-~~~~~G~~~~~~-~~~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 344 (408)
T TIGR01733 287 P-----RE-SPVPIGRPLANT-RLYVLDDD-LRPVPVG--VVGELYIGGPGVARGYLNRPELTAERFV 344 (408)
T ss_pred C-----Cc-cccccCcccCCc-eEEEECCC-CCCCCCC--CceEEEecCccccccccCChhhhhccee
Confidence 0 00 257899999999 99999998 9999988 8999999999999999999999988773
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=359.32 Aligned_cols=389 Identities=18% Similarity=0.218 Sum_probs=291.1
Q ss_pred CCCCCCCCcCCCCCCCCCCCCHHHHHHHHHhhCCCcceEEECC---eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEc
Q 048242 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYES---KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLS 77 (430)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~---~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 77 (430)
|.+..+...+...-+.. .++.++|+..++.+|+..++...+ +.+||.||+.++.++|+.|.++|+++||+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~ 81 (579)
T PRK09192 4 MSPTPTTSSLPRRYADF--PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIA 81 (579)
T ss_pred ccccccCccccccccch--hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEc
Confidence 55666666665554444 589999999999888766554332 6799999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhhhcCCeeeeccccCC-------hhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCe
Q 048242 78 PNVPAMYEVHFGVPMTGAVLNCINFRLN-------PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPV 150 (430)
Q Consensus 78 ~n~~~~~~~~lA~~~~G~~~~~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (430)
+|++++++++|||+++|++++|+++..+ .+++.++++.+++++++++......+.+..... ..
T Consensus 82 ~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~----------~~ 151 (579)
T PRK09192 82 ETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGN----------PL 151 (579)
T ss_pred CCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccc----------cc
Confidence 9999999999999999999999976443 578999999999999999887655444332110 11
Q ss_pred EEEecCCCCCCCcccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh-
Q 048242 151 LIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL- 229 (430)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~- 229 (430)
++. ..+.++....... .......++++++|+|||||||.||+|.++|++++..+.....
T Consensus 152 ~~~-------------------~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~ 211 (579)
T PRK09192 152 LHV-------------------LSHAWFKALPEAD-VALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHD 211 (579)
T ss_pred cce-------------------eehhhhcccCCCc-cccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhh
Confidence 111 1111111111111 1112346789999999999999999999999999988877776
Q ss_pred hcCCCCCCEEEeccCchhhhhhHH-HHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCC--
Q 048242 230 TWGMKEGAVYLWTLPIFHGNGWCF-TWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP-- 302 (430)
Q Consensus 230 ~~~~~~~~~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~-- 302 (430)
.+++..+|+++.++|++|.+|+.. ++.++..|+++++.+. .++..+++.+.++++++++..|..++.+.....
T Consensus 212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~ 291 (579)
T PRK09192 212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK 291 (579)
T ss_pred cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc
Confidence 788899999999999999999884 5556777888877652 368899999999999988776666655543321
Q ss_pred -CCCCCCCCceeEEeecCCCCCHHHHHHHHh-c---C---cEEEeeecCccccccccccccCCCCCC--CCh--------
Q 048242 303 -EDTILPLPHVVNVNTGGSPPPPPILLAMSQ-K---G---FRVTHVYGLSEINGPATVCAWNPNWDS--LPF-------- 364 (430)
Q Consensus 303 -~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~-~---~---~~v~~~YG~tE~~~~~~~~~~~~~~~~--~~~-------- 364 (430)
....+ ++++|.+++||+++++.+.+.+.+ + + ..+++.||+||+++.++.......... ...
T Consensus 292 ~~~~~~-l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (579)
T PRK09192 292 DLAELD-LSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGK 370 (579)
T ss_pred cccccc-hhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCce
Confidence 12234 889999999999999999998874 3 2 348999999999766654322110000 000
Q ss_pred -------hhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 365 -------EAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 365 -------~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
........++|++++++ +++|+|++ ++.++.+ +.|||+++|++++.|||++ +.+.+.|
T Consensus 371 ~~~~~~~~~~~~~~~~vG~~~p~~-~v~i~d~~-~~~~~~g--~~Gel~i~g~~~~~gY~~~-~~~~~~~ 435 (579)
T PRK09192 371 AVAPGAETRRVRTFVNCGKALPGH-EIEIRNEA-GMPLPER--VVGHICVRGPSLMSGYFRD-EESQDVL 435 (579)
T ss_pred eeccCCCCccceeEeecCCcCCCc-EEEEECCC-CCCCCCC--CEEEEEecCCchhhhhcCC-ccccccc
Confidence 00001135799999999 89999987 8999988 8999999999999999999 5665555
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=381.17 Aligned_cols=366 Identities=19% Similarity=0.184 Sum_probs=289.0
Q ss_pred CCCHHHHHHHHHhhCC-CcceEEE-CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 19 ALTPLWFLERAATVHP-TRKSVVY-ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p-~~~a~~~-~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..++.+.+++.++++| ++.++.+ .++++||+||.++++++|+.|.+ |+++||+|+++++|+++++++++||+++|++
T Consensus 630 ~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v 708 (1140)
T PRK06814 630 DRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708 (1140)
T ss_pred cCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence 4678888888888887 5567665 35899999999999999999975 9999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHH--HHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccc
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALA--EEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTE 174 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (430)
++|++|..+.+++.++++++++++++++++..... ........ ....++.+++..... .....
T Consensus 709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~--------~~~~~ 773 (1140)
T PRK06814 709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALE-------FGIRIIYLEDVRAQI--------GLADK 773 (1140)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhc-------cCceEEEehHhhccC--------ChHHH
Confidence 99999999999999999999999999987654432 11111111 234455554321100 00011
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH-H
Q 048242 175 YEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-F 253 (430)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~-~ 253 (430)
+.+......+... .....++|+++++|||||||.||+|.++|+++.+.+......++...+|++++.+|++|.+++. .
T Consensus 774 ~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 852 (1140)
T PRK06814 774 IKGLLAGRFPLVY-FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGG 852 (1140)
T ss_pred HHHHhhccCCccc-cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHH
Confidence 1121111111111 1135678999999999999999999999999998888888888999999999999999999985 5
Q ss_pred HHHHHhhcceEEEeCC-CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-
Q 048242 254 TWSLAALCGTSVMLRQ-ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS- 331 (430)
Q Consensus 254 ~~~~l~~g~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~- 331 (430)
.+.++..|+++++.+. .+...+.+.++++++|+++.+|++++.+.+... ..+ ++++|.+++||+++++++.+.++
T Consensus 853 ~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~~~-~~~lr~v~~gg~~l~~~~~~~~~~ 929 (1140)
T PRK06814 853 LVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH--PYD-FRSLRYVFAGAEKVKEETRQTWME 929 (1140)
T ss_pred HHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc--ccc-ccceeEEEEcCCcCCHHHHHHHHH
Confidence 7778889999988864 567778899999999999999999999887532 234 88999999999999999999998
Q ss_pred hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCc
Q 048242 332 QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNM 411 (430)
Q Consensus 332 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~ 411 (430)
.+++++++.||+||+++.++.+... ..+.+++|+|.+++ ++++.+.+ + .+ +.|||+++|++
T Consensus 930 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~g~-~~~~~~~~-~----~~--~~Gel~v~g~~ 990 (1140)
T PRK06814 930 KFGIRILEGYGVTETAPVIALNTPM-----------HNKAGTVGRLLPGI-EYRLEPVP-G----ID--EGGRLFVRGPN 990 (1140)
T ss_pred HhCCcEEeccccccccceEEecCCC-----------CCCCCcCCccCCCC-eEEEeecC-C----CC--CceEEEEeCCC
Confidence 6699999999999998766543221 12347899999999 89998764 2 23 67999999999
Q ss_pred ccccccCCcccc
Q 048242 412 VMKGYLKNPKAN 423 (430)
Q Consensus 412 v~~gY~~~~~~t 423 (430)
++.|||++++.+
T Consensus 991 ~~~gY~~~~~~~ 1002 (1140)
T PRK06814 991 VMLGYLRAENPG 1002 (1140)
T ss_pred cchhhcCCCCCC
Confidence 999999876543
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=324.87 Aligned_cols=384 Identities=20% Similarity=0.220 Sum_probs=302.2
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEECC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYES--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
..-+..++.+.|.++++++|+++|+++.+ +++||+|+.++++++|+.|...|++.||+|+++|+|++|++.+.|++++
T Consensus 72 ~rr~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaK 151 (649)
T KOG1179|consen 72 SRRERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAK 151 (649)
T ss_pred hhccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHh
Confidence 34567899999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
+|++.+.||+++..+.+.|.+..++++.+|++.+....+.++.+.+.. ..-.+...+..+ ...+.
T Consensus 152 lGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~------~~i~~~~~~~~~---------~~~g~ 216 (649)
T KOG1179|consen 152 LGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIK------NGIHVFSLGPTS---------VPDGI 216 (649)
T ss_pred hCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhh------ccceEEecCCCC---------CCchH
Confidence 999999999999999999999999999999999988777776443321 122333333322 22344
Q ss_pred cchhhhhhcCCCCCCC---CCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhh
Q 048242 173 TEYEKLLETGDPEFAW---KPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGN 249 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~ 249 (430)
.++.+.++....++.+ ....+-.++++.+|||||||.||+.+++|...+.........++++.+|+++.++|+||..
T Consensus 217 ~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsa 296 (649)
T KOG1179|consen 217 ESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSA 296 (649)
T ss_pred HHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHH
Confidence 4555555555444422 2345667899999999999999999999999888877788899999999999999999998
Q ss_pred hhHH-HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHH
Q 048242 250 GWCF-TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILL 328 (430)
Q Consensus 250 gl~~-~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~ 328 (430)
|.+. ...++..|+|+|+-.+|++..+|+...+|++|++-..-.+++.|++.++.+... -..+|.++ |..+.+++++
T Consensus 297 a~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er-~HkVRla~--GNGLR~diW~ 373 (649)
T KOG1179|consen 297 AGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER-QHKVRLAY--GNGLRPDIWQ 373 (649)
T ss_pred HHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc-CceEEEEe--cCCCCchHHH
Confidence 8774 777788999999999999999999999999999999999999999998887665 66777766 7789999999
Q ss_pred HHH-hcCcE-EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCC----------C
Q 048242 329 AMS-QKGFR-VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPI----------P 396 (430)
Q Consensus 329 ~~~-~~~~~-v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~----------~ 396 (430)
+|. +||.. |.+.||+||...-. .+..+. -..+...+...+-+..+ ++-=+|+++++++ +
T Consensus 374 ~Fv~RFg~~~IgE~YgaTEgn~~~-~N~d~~-------vGA~G~~~~~~~~l~p~-~LIk~D~~t~E~iRd~~G~Ci~~~ 444 (649)
T KOG1179|consen 374 QFVKRFGIIKIGEFYGATEGNSNL-VNYDGR-------VGACGFMSRLLKLLYPF-RLIKVDPETGEPIRDSQGLCIPCP 444 (649)
T ss_pred HHHHHcCCCeEEEEeccccCccee-eeecCc-------cccccchhhhhhhccce-EEEEecCCCCceeecCCceEEECC
Confidence 997 88866 99999999975332 222110 00011111122333333 3444677777765 4
Q ss_pred CCCCceeEEEE--ecCcc---cccccCCcccchHhh
Q 048242 397 ADGKTIGEVVM--RGNMV---MKGYLKNPKANEEAF 427 (430)
Q Consensus 397 ~~~~~~Gel~v--~g~~v---~~gY~~~~~~t~~~f 427 (430)
+| |+|.|.- ...+- |.||.+++++|.++.
T Consensus 445 ~G--EpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl 478 (649)
T KOG1179|consen 445 PG--EPGLLVGKIVQKNPLRSFLGYAGPKKATEKKL 478 (649)
T ss_pred CC--CCceEEEEeccCCchhhhccccCchhhhhhhh
Confidence 44 8887743 33445 899999888886653
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=349.50 Aligned_cols=356 Identities=22% Similarity=0.273 Sum_probs=284.0
Q ss_pred ceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhc
Q 048242 37 KSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHA 116 (430)
Q Consensus 37 ~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~ 116 (430)
.++.+.+..+||.||.+++.++|+.|.++|+++||+|+++++|++++++++|||+++|++++|+++..+.+++.++++.+
T Consensus 3 ~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~ 82 (502)
T PRK08276 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDS 82 (502)
T ss_pred eEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcC
Confidence 45566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcCCCCCCCCCCCCCCC
Q 048242 117 EAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQ 196 (430)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (430)
+++++++++.....+.+....... ....++..+.. ......+.+........ .....++
T Consensus 83 ~~~~ii~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----~~~~~~~ 141 (502)
T PRK08276 83 GAKVLIVSAALADTAAELAAELPA------GVPLLLVVAGP-----------VPGFRSYEEALAAQPDT----PIADETA 141 (502)
T ss_pred CCCEEEEccchhhHHHHHhhhccc------cccEEEEeCCC-----------CCccccHHHHHhcCCCC----CCCCCCc
Confidence 999999998776655544332210 12333333211 01223444444322111 1234567
Q ss_pred eeEEEeCCCCCCCCceEEechHHHHHHH------HHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCC
Q 048242 197 SIALGYTSGTTANPKGVLVSHRAAYLMS------LNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQA 270 (430)
Q Consensus 197 ~~~i~~TSGttG~pK~v~~t~~~l~~~~------~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~ 270 (430)
.++++|||||||.||+|+++|.++.... ...........++++++..|++|.+++...+.++..|+++++.+.+
T Consensus 142 ~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 221 (502)
T PRK08276 142 GADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKF 221 (502)
T ss_pred ceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCC
Confidence 8999999999999999999887653221 1222222235778999999999999988878888999999998889
Q ss_pred CHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCcccc
Q 048242 271 SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEIN 347 (430)
Q Consensus 271 ~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~ 347 (430)
++..+++.++++++|+++++|+++..+++.... ...+ ++++|.++++|++++.++.++++ .++..+++.||+||++
T Consensus 222 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~ 300 (502)
T PRK08276 222 DAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYD-VSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGG 300 (502)
T ss_pred CHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCC-cccceEEEecCCCCCHHHHHHHHHHhCcHhhhhccccccc
Confidence 999999999999999999999999999886542 2345 78999999999999999999998 5688899999999998
Q ss_pred ccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 348 GPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
+.+...... .....+++|+|+ ++ +++|+|++ +++++.| +.|||+++|++++.||+++++.+.+.|
T Consensus 301 ~~~~~~~~~----------~~~~~~~~G~~~-~~-~~~i~d~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~ 365 (502)
T PRK08276 301 GVTVITSED----------WLAHPGSVGKAV-LG-EVRILDED-GNELPPG--EIGTVYFEMDGYPFEYHNDPEKTAAAR 365 (502)
T ss_pred ceeEecCcc----------ccccCCCcceec-cc-EEEEECCC-CCCCcCC--CceEEEEECCCccchhcCCHHHHHHHh
Confidence 755443211 112347899999 77 89999977 8999988 899999999999999999999998887
Q ss_pred hC
Q 048242 428 AN 429 (430)
Q Consensus 428 ~d 429 (430)
.+
T Consensus 366 ~~ 367 (502)
T PRK08276 366 NP 367 (502)
T ss_pred cC
Confidence 43
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=340.16 Aligned_cols=324 Identities=20% Similarity=0.225 Sum_probs=268.5
Q ss_pred HHHHH-HHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeec
Q 048242 22 PLWFL-ERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCI 100 (430)
Q Consensus 22 ~~~~l-~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l 100 (430)
+.+.. ...++.+|+++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+
T Consensus 4 ~~~~~~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~ 83 (458)
T PRK09029 4 FSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83 (458)
T ss_pred hhcChHHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeec
Confidence 33333 45678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhh
Q 048242 101 NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180 (430)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (430)
+|..+.+++..+++++++++++++.+... +.. ..... .. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------------~~~~~-~~---------------------~--- 123 (458)
T PRK09029 84 NPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------------LTSLH-LQ---------------------L--- 123 (458)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------------ccccc-cc---------------------c---
Confidence 99999999999999999999999876422 100 00000 00 0
Q ss_pred cCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhh
Q 048242 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAAL 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~ 260 (430)
. .. .......++++++++|||||||.||+|.++|+++...+......++...+++++..+|++|.+|+...+.++..
T Consensus 124 -~-~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~ 200 (458)
T PRK09029 124 -V-EG-AHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYA 200 (458)
T ss_pred -c-cc-cCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhC
Confidence 0 00 01123457889999999999999999999999999998888888889999999999999999999877788889
Q ss_pred cceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEee
Q 048242 261 CGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHV 340 (430)
Q Consensus 261 g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~~ 340 (430)
|+++++.+. ..+++.+ .++|.+..+|+++..+...... ..++|.+++||+++++.+.+++++++.++++.
T Consensus 201 G~~v~~~~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~-----~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~ 270 (458)
T PRK09029 201 GATLVVRDK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE-----PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCG 270 (458)
T ss_pred CceEEeCCh---HHHHHHH--hhceeeecChHHHHHHHhcccc-----CCcceEEEECCCCCCHHHHHHHHHcCCcEecc
Confidence 999887764 4566666 4899999999999999876543 34799999999999999999999889999999
Q ss_pred ecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCc
Q 048242 341 YGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420 (430)
Q Consensus 341 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~ 420 (430)
||+||++........ ....++|+|++++ +++|+| |||+++|++++.||++++
T Consensus 271 YG~tE~~~~~~~~~~-------------~~~~~~G~~~~~~-~~~i~~--------------gel~v~g~~~~~gY~~~~ 322 (458)
T PRK09029 271 YGLTEMASTVCAKRA-------------DGLAGVGSPLPGR-EVKLVD--------------GEIWLRGASLALGYWRQG 322 (458)
T ss_pred ccccccCcceeccCC-------------CCCCCCCCCCCCC-EEEEeC--------------CEEEEecCceeeeeecCc
Confidence 999999765433211 1125699999999 888863 799999999999999999
Q ss_pred ccchHh
Q 048242 421 KANEEA 426 (430)
Q Consensus 421 ~~t~~~ 426 (430)
+.+...
T Consensus 323 ~~~~~~ 328 (458)
T PRK09029 323 QLVPLV 328 (458)
T ss_pred cccccc
Confidence 877543
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=345.16 Aligned_cols=365 Identities=20% Similarity=0.203 Sum_probs=281.2
Q ss_pred CHHHHHHHHHhhCCCcceEEECC--eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 21 TPLWFLERAATVHPTRKSVVYES--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 21 t~~~~l~~~~~~~p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
++.+.+...++.+|+..++...+ +.+||.||+++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 57888888999999999997654 6899999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhH-------HHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCC
Q 048242 99 CINFRLNPLNV-------AIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171 (430)
Q Consensus 99 ~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (430)
++++..+..++ .++++.++++.+++++........... ....+
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------~~~~~-------------------- 132 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE----------KGIRV-------------------- 132 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc----------cCCce--------------------
Confidence 99988776544 446777899999998765432222100 01111
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCC-CEEEeccCchhhhh
Q 048242 172 VTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEG-AVYLWTLPIFHGNG 250 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~~~~~~pl~h~~g 250 (430)
..++++...... ......++++++++|||||||+||+|+++|+++...+......+++..+ |++++.+|++|..+
T Consensus 133 -~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 208 (545)
T PRK07768 133 -LTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMG 208 (545)
T ss_pred -eehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchH
Confidence 222333221111 1123467899999999999999999999999999888887777888776 89999999999999
Q ss_pred hHH-HHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCC----CCCCCCCCCceeEEeecCCC
Q 048242 251 WCF-TWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP----PEDTILPLPHVVNVNTGGSP 321 (430)
Q Consensus 251 l~~-~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~----~~~~~~~l~~lr~v~~~G~~ 321 (430)
+.. .+.++..|+++++... .++..+++.+++++++++..+|..+..+.... .....+ +++||.++.+|++
T Consensus 209 ~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~lr~~~~~g~~ 287 (545)
T PRK07768 209 MVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFD-LSSLRFALNGAEP 287 (545)
T ss_pred HHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCC-chheeeEEeccCC
Confidence 885 5556788998888753 36788899999999999988887776665422 111244 8899999999999
Q ss_pred CCHHHHHHHHh----cCc---EEEeeecCccccccccccccCCCC-CCC-Ch-------------hhhhhhccccCCccc
Q 048242 322 PPPPILLAMSQ----KGF---RVTHVYGLSEINGPATVCAWNPNW-DSL-PF-------------EAQARLNARQGVKCM 379 (430)
Q Consensus 322 l~~~~~~~~~~----~~~---~v~~~YG~tE~~~~~~~~~~~~~~-~~~-~~-------------~~~~~~~~~vG~~~~ 379 (430)
+++.+.+++.+ +|. .+++.||+||++..++........ ... .. .......+++|+|++
T Consensus 288 ~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 367 (545)
T PRK07768 288 IDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLP 367 (545)
T ss_pred CCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCC
Confidence 99999998874 454 499999999998765543322100 000 00 000224468999999
Q ss_pred cccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccch
Q 048242 380 CLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANE 424 (430)
Q Consensus 380 ~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~ 424 (430)
++ +++|+|++ +++++.+ +.|||+++|+.++.||++++....
T Consensus 368 g~-~~~i~~~~-~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~ 408 (545)
T PRK07768 368 GL-EVRVVDED-GQVLPPR--GVGVIELRGESVTPGYLTMDGFIP 408 (545)
T ss_pred CC-EEEEECCC-CCCCCCC--CEEEEEEccCcccccccCCCCCcc
Confidence 99 99999977 8999988 899999999999999998665443
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=330.58 Aligned_cols=318 Identities=22% Similarity=0.288 Sum_probs=261.0
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccc
Q 048242 47 TWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ 126 (430)
Q Consensus 47 Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (430)
||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCC
Q 048242 127 YFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGT 206 (430)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 206 (430)
..... .... .+.+.................+++++++|||||
T Consensus 81 ~~~~~-----------------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGt 122 (436)
T TIGR01923 81 LEEKD-----------------FQAD---------------------SLDRIEAAGRYETSLSASFNMDQIATLMFTSGT 122 (436)
T ss_pred ccccc-----------------eeec---------------------chHhhhhcccccccccccCCcCceEEEEeCCCC
Confidence 32100 0000 000000001111111123456789999999999
Q ss_pred CCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceE
Q 048242 207 TANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTN 286 (430)
Q Consensus 207 tG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~ 286 (430)
||.||+|+++|+++...+......++++.+|++++.+|++|.+++...+.++..|+++++.+.++ .+++.++++++|+
T Consensus 123 TG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~ 200 (436)
T TIGR01923 123 TGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN--QLLEMIANERVTH 200 (436)
T ss_pred CCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH--HHHHHHHHhCCeE
Confidence 99999999999999998888888889999999999999999999988888899999999887653 8999999999999
Q ss_pred EeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEeeecCccccccccccccCCCCCCCChhh
Q 048242 287 FCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEA 366 (430)
Q Consensus 287 ~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 366 (430)
+.++|+++..+...... .+++|.++++|+++++++.+.+++.++++++.||+||+++.++......
T Consensus 201 ~~~~P~~l~~l~~~~~~-----~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~--------- 266 (436)
T TIGR01923 201 ISLVPTQLNRLLDEGGH-----NENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEM--------- 266 (436)
T ss_pred EEeHHHHHHHHHhCcCC-----CCceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCccc---------
Confidence 99999999999886543 3689999999999999999999888999999999999987655433211
Q ss_pred hhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 367 QARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 367 ~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
. ....++|++++++ +++|.+.+ . + +.|||+++|+.++.||+++++.+...|.
T Consensus 267 ~-~~~~~~G~~~~~~-~~~i~~~~-~-----~--~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 318 (436)
T TIGR01923 267 L-HARPDVGRPLAGR-EIKIKVDN-K-----E--GHGEIMVKGANLMKGYLYQGELTPAFEQ 318 (436)
T ss_pred c-ccccCCCccCCCc-EEEEEeCC-C-----C--CceEEEEECCccchhhCCChhhhhhhhc
Confidence 0 1112489999999 89984433 1 1 5799999999999999998888766553
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=336.23 Aligned_cols=301 Identities=14% Similarity=0.115 Sum_probs=244.2
Q ss_pred eeeHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEe
Q 048242 45 HYTWQQTYQRCRRLASALSQLSI-GPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFV 123 (430)
Q Consensus 45 ~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~ 123 (430)
-+.|+||.+++.++|+.|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++..++.++++.++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 47899999999999999999988 57999999999999999999999999999999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeC
Q 048242 124 DQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYT 203 (430)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~T 203 (430)
+.+.... . .... ... .....+++.++++||
T Consensus 99 ~~~~~~~----------------~------~~~~------------------------~~~----~~~~~~~~~~~i~~T 128 (452)
T PRK07445 99 LDQLKLS----------------H------PPPL------------------------PSQ----GILPNLETGWIMIPT 128 (452)
T ss_pred cCccccc----------------c------CCCC------------------------Ccc----ccCCCCCCcEEEEeC
Confidence 7643210 0 0000 000 011345789999999
Q ss_pred CCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhC
Q 048242 204 SGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHG 283 (430)
Q Consensus 204 SGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~ 283 (430)
|||||.||+|++||+++...+.+....+++.. ++.++.+|++|.+|+...+.++..|+++++.+............+++
T Consensus 129 SGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~ 207 (452)
T PRK07445 129 GGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPS 207 (452)
T ss_pred CCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcC
Confidence 99999999999999999888887777666654 46788999999999988888899999999886433333334456789
Q ss_pred ceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEeeecCccccccccccccCCCCCCCC
Q 048242 284 VTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLP 363 (430)
Q Consensus 284 vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 363 (430)
+|+++++|++++.+.+.. ... +++||.+++||+++++++.++++++++++++.||+||+++.++.....
T Consensus 208 ~t~~~~vP~~l~~l~~~~---~~~-l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~------- 276 (452)
T PRK07445 208 DFFLSLVPTQLQRLLQLR---PQW-LAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPD------- 276 (452)
T ss_pred ceEEEehHHHHHHHHhhC---hhh-hhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCch-------
Confidence 999999999999998732 223 789999999999999999999887899999999999987655432211
Q ss_pred hhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcc
Q 048242 364 FEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPK 421 (430)
Q Consensus 364 ~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~ 421 (430)
.......++|+|++++ +++|+ .+ +.|||+++|++++.|||+++.
T Consensus 277 --~~~~~~~~~G~~~p~~-~v~i~---------~g--~~Gel~v~g~~~~~gY~~~~~ 320 (452)
T PRK07445 277 --DFLAGNNSSGQVLPHA-QITIP---------AN--QTGNITIQAQSLALGYYPQIL 320 (452)
T ss_pred --hhccCCCcCCccCCCC-eEEEc---------CC--CcceEEEeCCccchhhcCCcc
Confidence 1112346799999999 89998 23 679999999999999998764
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=350.57 Aligned_cols=358 Identities=13% Similarity=0.136 Sum_probs=266.7
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
....++.++|+++++.+|+++|+++.++.+||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav 523 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAV 523 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|. .++.++++.++++++|++.+....+.. ....++.+++...... ..........+.
T Consensus 524 ~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~-------------~~~~iiv~~~~~~~~~--~~~~~~~~~~~~ 585 (994)
T PRK07868 524 AVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQ-------------LPGRVLVLGGGESRDL--DLPDDADVIDME 585 (994)
T ss_pred EEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHh-------------cCceEEEecCCccccc--cCCcchhhhhhh
Confidence 9999985 679999999999999998766543322 1234555543210000 000000111111
Q ss_pred hhhhcCCCCCC--CCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHH
Q 048242 177 KLLETGDPEFA--WKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFT 254 (430)
Q Consensus 177 ~~~~~~~~~~~--~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~ 254 (430)
+........+. ...+..++++++|+|| ||||+||++.++|.+...........+++..+|++++.+|++|.+++...
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~ 664 (994)
T PRK07868 586 KIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVS 664 (994)
T ss_pred hcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHH
Confidence 11111000010 0112236899999998 68888888888887765555555566788899999999999999999876
Q ss_pred HHHHhhcceEE-EeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-h
Q 048242 255 WSLAALCGTSV-MLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-Q 332 (430)
Q Consensus 255 ~~~l~~g~~~v-~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~ 332 (430)
+.+++.|++.+ +.+.+++..+++.|+++++|+++++|++++.+++.......+ +++||.++ |+.+++++.+++. .
T Consensus 665 l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~-~~slr~~~--g~gl~~~l~~~~~~~ 741 (994)
T PRK07868 665 LGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHG-NHPVRLFI--GSGMPTGLWERVVEA 741 (994)
T ss_pred HHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCC-CCceEEEe--cCCCCHHHHHHHHHH
Confidence 66656555544 556789999999999999999999999999999875444444 78999876 3459999999998 5
Q ss_pred cC-cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEe-----------eCCCC--CCCCCC
Q 048242 333 KG-FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVL-----------DTKTN--QPIPAD 398 (430)
Q Consensus 333 ~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~-----------d~~~~--~~~~~~ 398 (430)
++ +++++.||+||++.... +.. ..+.+++|+|++++.+++|. |.+ | +.++.|
T Consensus 742 ~~~~~l~~~YG~TE~~~~~~-~~~------------~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~-G~~~~~~~g 807 (994)
T PRK07868 742 FAPAHVVEFFATTDGQAVLA-NVS------------GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDR-GFVRRAEVN 807 (994)
T ss_pred hCchheeeeeeccccccccc-ccC------------CCCCcccCCccCCCCceeEEEecCcCCceeecCC-ceEEEcCCC
Confidence 65 88999999999864432 110 12347899999996335543 333 5 556666
Q ss_pred CCceeEEEEecCcc
Q 048242 399 GKTIGEVVMRGNMV 412 (430)
Q Consensus 399 ~~~~Gel~v~g~~v 412 (430)
+.|||+++|+..
T Consensus 808 --e~Gel~~~~~~~ 819 (994)
T PRK07868 808 --EVGVLLARARGP 819 (994)
T ss_pred --CceEEEEecCCC
Confidence 899999999853
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=331.37 Aligned_cols=319 Identities=14% Similarity=0.137 Sum_probs=238.4
Q ss_pred cCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecccc------HHHHHHHHHHhhccCCCCCCCCe
Q 048242 77 SPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQY------FALAEEALKIMEGKSEGLFKPPV 150 (430)
Q Consensus 77 ~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 150 (430)
++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.. ...+.+..... ....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 72 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAA--------PAKA 72 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcc--------cceE
Confidence 589999999999999999999999999999999999999999999998642 11222211110 1122
Q ss_pred EEEecCCCCCCCcccccccCCccchhhhhhcCCC------CCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHH
Q 048242 151 LIVIGDETCDRAPLEYALSKGVTEYEKLLETGDP------EFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMS 224 (430)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~ 224 (430)
++.......... ....+...|.+++..... .........++++++|+|||||||.||||++||++++...
T Consensus 73 i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~ 148 (499)
T PLN03051 73 IVLPAAGEPVAV----PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCA 148 (499)
T ss_pred EEEeccCcccCC----ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHH
Confidence 222111100000 000122345555421110 0111112356899999999999999999999999987776
Q ss_pred HHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCC-CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCC-
Q 048242 225 LNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQ-ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP- 302 (430)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~- 302 (430)
......++++.+|++++.+|++|.+++..++.+++.|+++++.+. +++..+++.|+++++|+++++|+++..+.+...
T Consensus 149 ~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~ 228 (499)
T PLN03051 149 SDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF 228 (499)
T ss_pred HHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc
Confidence 666666788899999999999999998877888899999998874 788999999999999999999999999987643
Q ss_pred -CCCCCCCCceeEEeecCCCCCHHHHHHHHh-c--CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCcc
Q 048242 303 -EDTILPLPHVVNVNTGGSPPPPPILLAMSQ-K--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC 378 (430)
Q Consensus 303 -~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~-~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 378 (430)
....+ +++||.+++||+++++++.+++++ + ++++++.||+||+++.++..... .....+++|+|.
T Consensus 229 ~~~~~~-~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~ 297 (499)
T PLN03051 229 AMEGLD-WSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLL----------QPQAPGAFSTAS 297 (499)
T ss_pred ccccCC-chhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccccc----------CCCCCccccCCC
Confidence 23344 889999999999999999988776 3 47899999999986543322110 011347899999
Q ss_pred ccccceEEeeCCCCCCCCCCCCceeEEEEecCcc--cccccCCc
Q 048242 379 MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMV--MKGYLKNP 420 (430)
Q Consensus 379 ~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v--~~gY~~~~ 420 (430)
+++ +++|+|++ +++++.|..++|||+++|+.+ +.|||+++
T Consensus 298 ~~~-~~~ivd~~-g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~ 339 (499)
T PLN03051 298 LGT-RFVLLNDN-GVPYPDDQPCVGEVALAPPMLGASDRLLNAD 339 (499)
T ss_pred CCc-eEEEECCC-CCCCCCCCCcceEEEEecCcCCCCccccCCc
Confidence 999 99999987 999988732479999999976 58999765
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=334.76 Aligned_cols=363 Identities=16% Similarity=0.066 Sum_probs=270.4
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEEC---C--eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYE---S--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~---~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
...|+.++|.+.++++|+++|+... + +++||+|+.+++.++|+.|.+.|+++||+|+|+++|+++|+++.+||++
T Consensus 425 ~~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~ 504 (1452)
T PTZ00297 425 GVRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACAL 504 (1452)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3458999999999999999999742 2 6899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCC-CCCcccccccCC
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETC-DRAPLEYALSKG 171 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 171 (430)
+|++++|+.+ +.+++.++++.++++++|++.+....+.++.. + ..+.+|++++... ............
T Consensus 505 ~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~-------~Lr~IIv~d~~~~~~~~~~~~~~~i~ 573 (1452)
T PTZ00297 505 YGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS--R-------KLETVVYTHSFYDEDDHAVARDLNIT 573 (1452)
T ss_pred cCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--c-------CCcEEEEECCCcccccccccccCCcc
Confidence 9999999975 36789999999999999998766655443211 1 4677888864210 000000001123
Q ss_pred ccchhhhhhcCCCCCC-CCCCCCCCCeeEEEe---CCCCCCCCceEEechHHHHHHHHHHHhhc---CCCCCCEEEeccC
Q 048242 172 VTEYEKLLETGDPEFA-WKPPRDEWQSIALGY---TSGTTANPKGVLVSHRAAYLMSLNVVLTW---GMKEGAVYLWTLP 244 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~---TSGttG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~p 244 (430)
..+|++++..+..... ......++|++.|+| ||||||.||||++||+|++.++....... ....+|++++.+|
T Consensus 574 ~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LP 653 (1452)
T PTZ00297 574 LIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTP 653 (1452)
T ss_pred eeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEech
Confidence 5678888876532111 112346789999985 99999999999999999999888765432 3567899999999
Q ss_pred chhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC--------------------
Q 048242 245 IFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED-------------------- 304 (430)
Q Consensus 245 l~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~-------------------- 304 (430)
++|+++....+.++..|+++.. +++..+++.|++++||+++++|.+|+.+......+
T Consensus 654 LaHI~er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~ 730 (1452)
T PTZ00297 654 FAMLFNRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRS 730 (1452)
T ss_pred HHHHHHHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 9999997777777888888753 47899999999999999999999999886431000
Q ss_pred ------CCC---------------CCCceeEEeecCC--CCCHHHHHHHHhcCcEEEeeecCccccccccccccCCCCCC
Q 048242 305 ------TIL---------------PLPHVVNVNTGGS--PPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDS 361 (430)
Q Consensus 305 ------~~~---------------~l~~lr~v~~~G~--~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~ 361 (430)
... .-.++|.+++||+ +++. ....++++..+||+||+. +.+....
T Consensus 731 ~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~-----~l~~~i~i~~g~glTE~~---~~~~~~~---- 798 (1452)
T PTZ00297 731 RLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSF-----SLLEHISVCYVPCLREVF---FLPSEGV---- 798 (1452)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccCh-----HHhCCceEEEecceEEee---eecCCCC----
Confidence 000 0257999998873 4443 333468889999999952 2222211
Q ss_pred CChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 362 LPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 362 ~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
....|+|+|++ +++|.|.+..... + ..|||+++ |++||++|++.+
T Consensus 799 ---------~~~~G~Plpgv-EvKI~~~~E~~~~--~--~~GEIlvr-------~~kdpe~T~e~~ 843 (1452)
T PTZ00297 799 ---------FCVDGTPAPSL-QVDLEPFDEPSDG--A--GIGQLVLA-------KKGEPRRTLPIA 843 (1452)
T ss_pred ---------cccCCeecCce-EEEEcccccccCC--C--CCCeEEEE-------ECCChHHHHHhh
Confidence 12249999999 9999875312111 2 35999995 468999998753
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=308.06 Aligned_cols=288 Identities=15% Similarity=0.120 Sum_probs=245.7
Q ss_pred eEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcC
Q 048242 38 SVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAE 117 (430)
Q Consensus 38 a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~ 117 (430)
++++.++++||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|++|..+.+++..+++.++
T Consensus 1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 46778899999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhhcCCCCCCCCCCCCCCCe
Q 048242 118 AALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQS 197 (430)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (430)
++++++++.... . .. .....++++
T Consensus 80 ~~~~i~~~~~~~-----------------~-------~~--------------------------------~~~~~~~~~ 103 (414)
T PRK08308 80 CHGLLYGESDFT-----------------K-------LE--------------------------------AVNYLAEEP 103 (414)
T ss_pred CCEEEecCcccc-----------------c-------cc--------------------------------CCCCCCCCc
Confidence 999998763100 0 00 012345789
Q ss_pred eEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH-HHHHHHhhcceEEEeCCCCHHHHH
Q 048242 198 IALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-FTWSLAALCGTSVMLRQASAKAIY 276 (430)
Q Consensus 198 ~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~-~~~~~l~~g~~~v~~~~~~~~~~~ 276 (430)
++++|||||||.||+|.++|+++.+++......+....+|+++..+|++|.+|+. .++.++..|+++++.+.+++..++
T Consensus 104 ~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~ 183 (414)
T PRK08308 104 SLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFAL 183 (414)
T ss_pred eEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHH
Confidence 9999999999999999999999999888888888889999999999999999986 477788899999999889999999
Q ss_pred HHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEeeecCccccccccccccC
Q 048242 277 KAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWN 356 (430)
Q Consensus 277 ~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~ 356 (430)
+.++++++|+++++|.++..+.+.... ..+++.++.+|+++++++.+++++.+.++++.||+||++.......
T Consensus 184 ~~l~~~~~t~~~~~P~~~~~l~~~~~~-----~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-- 256 (414)
T PRK08308 184 NILRNTPQHILYAVPLMLHILGRLLPG-----TFQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICPD-- 256 (414)
T ss_pred HHHHHhCCeEEEcCHHHHHHHHhcCCc-----cccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecCC--
Confidence 999999999999999999999876532 2368889999999999999999977789999999999975332111
Q ss_pred CCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 357 PNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 357 ~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
....+++|+|++++ ++++.+.+ + ++|||++++.
T Consensus 257 -----------~~~~~~~G~p~~~~-~~~~~~~~-------~--~~gel~v~~~ 289 (414)
T PRK08308 257 -----------MKSHLDLGNPLPHV-SVSAGSDE-------N--APEEIVVKMG 289 (414)
T ss_pred -----------CCCCCccCccCCCe-EEEEecCC-------C--CCceEEEEcC
Confidence 01236799999999 89887532 3 6799999865
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=298.99 Aligned_cols=372 Identities=16% Similarity=0.205 Sum_probs=294.6
Q ss_pred HHHHHhhC-CCcceEEECC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 26 LERAATVH-PTRKSVVYES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 26 l~~~~~~~-p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
+++..+.. ++.+++++.+ ..+||.|+.+++.++|+.|.+.|+++||+|++++|+.+++++++|||.++|++.+
T Consensus 70 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~ 149 (626)
T KOG1175|consen 70 LDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHS 149 (626)
T ss_pred hhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEE
Confidence 44444443 7888888742 4499999999999999999988999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHH------HHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAE------EALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
++-...++.++...+...++|+|++.+......+ .....+.......+.....+.+.+.. ..
T Consensus 150 ~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~d 217 (626)
T KOG1175|consen 150 SVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN------------RD 217 (626)
T ss_pred EeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc------------cc
Confidence 9999999999999999999999999764322111 11111111111111112222222211 13
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHH-HHHHHHHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRA-AYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~-l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
..|++.+....+... ....+.+|+.+|+|||||||.||++.+++.. +...+......+.+..+|++.+..-+.++.|-
T Consensus 218 ~~~~~~~~~a~~~~~-~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~ 296 (626)
T KOG1175|consen 218 LFWSLELKKASPEHP-CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGH 296 (626)
T ss_pred ccHHHHhhhcCCCCC-ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeecc
Confidence 456666555555443 3567889999999999999999999999886 45555566667789999999999999999887
Q ss_pred HH-HHHHHhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCC--CCCCCceeEEeecCCCCCHHH
Q 048242 252 CF-TWSLAALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT--ILPLPHVVNVNTGGSPPPPPI 326 (430)
Q Consensus 252 ~~-~~~~l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~--~~~l~~lr~v~~~G~~l~~~~ 326 (430)
.. .+.+++.|+++++++ ++++..+++.+.++++|++++.|+.++.+.+...... .. +++||++.++||+++++.
T Consensus 297 ~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~-~~sLk~~~S~Gepi~~~~ 375 (626)
T KOG1175|consen 297 SYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYS-LKSLRTCGSVGEPINPEA 375 (626)
T ss_pred chhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccc-cceEEEEeecCccCCcch
Confidence 75 666899999999995 4699999999999999999999999997776544433 33 478999999999999999
Q ss_pred HHHHH-hcCc-EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeE
Q 048242 327 LLAMS-QKGF-RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGE 404 (430)
Q Consensus 327 ~~~~~-~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Ge 404 (430)
..++. .++. +|...||+||+|+.++.+....+ ..++++.|+|.+|+ .+.|+|++ |+.++.+. +.|+
T Consensus 376 ~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~---------p~~pg~~~~p~~g~-~v~i~de~-g~~~~~~~-~~G~ 443 (626)
T KOG1175|consen 376 WEWWKRVTGLDPIYETYGQTETGGICITPKPGKL---------PIKPGSAGKPFPGY-DVQILDEN-GNELPPST-GNGE 443 (626)
T ss_pred HHHHHHhcCccchhhceeeeccCceeeeccCCCC---------CcCccccCCCCCCc-ceEEECCC-CCCcCCCC-ceeE
Confidence 99998 6677 69999999999999988876531 35679999999999 89999996 99998865 6899
Q ss_pred EEEecC---cccccccCCcccc
Q 048242 405 VVMRGN---MVMKGYLKNPKAN 423 (430)
Q Consensus 405 l~v~g~---~v~~gY~~~~~~t 423 (430)
|+++.+ +.+++||+|++.-
T Consensus 444 l~~~~~~P~~~~r~~~~n~erf 465 (626)
T KOG1175|consen 444 LRLKPPWPPGMFRTLWGNHERF 465 (626)
T ss_pred EEEeCCCCccccccccCCHHHh
Confidence 999984 7799999999943
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=296.51 Aligned_cols=361 Identities=21% Similarity=0.274 Sum_probs=296.8
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++...|...+...|++.|+.+.+.++||+|+..+++++|+.|.+.|+++++.|+++.+.+.++++.++|++++|+.++
T Consensus 226 ~~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yv 305 (642)
T COG1020 226 RLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYV 305 (642)
T ss_pred cchHHHHHHHHHHhCCCceeEecCCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEe
Confidence 36799999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++..+++.+++.......... ... +.++....
T Consensus 306 P~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~------------------- 351 (642)
T COG1020 306 PLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG--------------LPG-LALDDALS------------------- 351 (642)
T ss_pred cCCCCChHHHHHHHHhhcCccEEEecccccccccc--------------CCc-cccccccc-------------------
Confidence 99999999999999999999999998332110000 000 11111100
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
......+. .....+++.++++|||||||+||||+.+|+++.+.+.+....+.++.+|+++...++.+.......+.++
T Consensus 352 -~~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l 429 (642)
T COG1020 352 -EIPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGAL 429 (642)
T ss_pred -cCCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHH
Confidence 00000000 1234568999999999999999999999999999888888889999999999999998888888999999
Q ss_pred hhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCC-CCCceeEEeecCCCCCHHHHHHHHhc-
Q 048242 259 ALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHVVNVNTGGSPPPPPILLAMSQK- 333 (430)
Q Consensus 259 ~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~~lr~v~~~G~~l~~~~~~~~~~~- 333 (430)
..|+++++.+. .++..+.+.+.++++|++..+|.++..+.......... ....+|.+++||+.++..+.+++...
T Consensus 430 ~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~ 509 (642)
T COG1020 430 LEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLA 509 (642)
T ss_pred hCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhc
Confidence 99999999863 68899999999999999999999999999872221111 03459999999999999999988743
Q ss_pred --CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCc
Q 048242 334 --GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNM 411 (430)
Q Consensus 334 --~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~ 411 (430)
...+.+.||+||+...+........ .. . ..++|+|+++. .+.|+|.. +++++.+ ..||+++.|.+
T Consensus 510 ~~~~~l~~~ygpTe~~~~~~~~~~~~~-------~~-~-~~piG~p~~n~-~~~ild~~-~~~~p~g--v~gel~i~g~~ 576 (642)
T COG1020 510 ALARRLLNLYGPTEATLDAPSFPISAE-------LE-S-RVPIGRPVANT-QLYILDQG-LRPLPLG--VPGELYIAGLG 576 (642)
T ss_pred cccceEeeccCccHHhhheeeEEcccc-------cC-C-CCCcceeeCCC-eEEEECCC-CCcCCCC--CCeeeEECCcc
Confidence 4689999999997655554433211 00 0 46899999998 89999955 9999999 89999999999
Q ss_pred ccccccCCcccchHhhh
Q 048242 412 VMKGYLKNPKANEEAFA 428 (430)
Q Consensus 412 v~~gY~~~~~~t~~~f~ 428 (430)
+.+||++++++|.++|.
T Consensus 577 ~a~gy~~~p~lt~~~f~ 593 (642)
T COG1020 577 LALGYLNRPDLTAERFI 593 (642)
T ss_pred hhhhhcCChhhhHHHhh
Confidence 99999999999999993
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=209.74 Aligned_cols=218 Identities=15% Similarity=0.126 Sum_probs=164.2
Q ss_pred HHHHHhhCCCcceEEEC-C-----eeeeHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 26 LERAATVHPTRKSVVYE-S-----KHYTWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 26 l~~~~~~~p~~~a~~~~-~-----~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
+...++.+|+++|+++. + .++||+|+.++++++|+.|.+ .|+++||+|+|+++|+++++++++|++++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 46778889999999853 2 369999999999999999998 7999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++ .+++++++++.+....+.. . ..++.+.+......... ....+..+|.+.
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 133 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAAG-------------S-GEVVALSLDPLGRRVAG-ELPPGVIDFAPE 133 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhccc-------------C-CceEEEeccccccCCCC-CCCCcccchhhh
Confidence 995 6789999998876554320 1 22333321100000000 011233456665
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH-HHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-FTWSL 257 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~-~~~~~ 257 (430)
+..............++|++.|+||||+ +|.+++... ...+++.+|+++ .+|++|.+|+. .++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~ 199 (227)
T TIGR03089 134 VRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAP 199 (227)
T ss_pred hhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHH
Confidence 5433222222113456899999999975 666665544 456788999999 99999999997 57788
Q ss_pred HhhcceEEEeCCCCHHHHHHHHHhhCce
Q 048242 258 AALCGTSVMLRQASAKAIYKAIAEHGVT 285 (430)
Q Consensus 258 l~~g~~~v~~~~~~~~~~~~~l~~~~vt 285 (430)
+..|+++++.++|++..+++.|+++|||
T Consensus 200 l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 200 LAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred hccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 8999999999999999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=210.53 Aligned_cols=192 Identities=25% Similarity=0.327 Sum_probs=161.0
Q ss_pred CCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEe---C
Q 048242 192 RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVML---R 268 (430)
Q Consensus 192 ~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~---~ 268 (430)
..++++++++|||||||.||+|+++|.++..........+ ...++++..+|++|.+++...+.++..|++.++. .
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 3467999999999999999999999999988777655543 3567899999999999998888888899998873 4
Q ss_pred CCCHHHHHHHHHhhC--ceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEeeecCccc
Q 048242 269 QASAKAIYKAIAEHG--VTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEI 346 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~--vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~~YG~tE~ 346 (430)
.+++..+++.+++++ .++...+|.++..+....... .+ ++++|.+++||+++++++.++++++++++++.||+||+
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~-~~-~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~ 187 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAAT-AA-LAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSET 187 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcccc-CC-cccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCcc
Confidence 578999999999998 566677898888877654432 33 88999999999999999999999889999999999998
Q ss_pred cccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccc
Q 048242 347 NGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKAN 423 (430)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t 423 (430)
++.+. ..|+|++++ +++|. + |||+++|+.++.||+++++.+
T Consensus 188 ~~~~~---------------------~~G~~~~g~-~v~i~--~------------Gei~v~g~~~~~gY~~~~~~~ 228 (358)
T PRK07824 188 SGGCV---------------------YDGVPLDGV-RVRVE--D------------GRIALGGPTLAKGYRNPVDPD 228 (358)
T ss_pred CCCcC---------------------cCceeCCCC-EEEec--C------------CEEEEecCccccccCCCcccc
Confidence 65432 248899999 88882 1 899999999999999988754
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=201.68 Aligned_cols=379 Identities=14% Similarity=0.123 Sum_probs=266.2
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECC------eeeeHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEcCCchhHHHHHHHhh
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALSQL-SIGPGTAVSVLSPNVPAMYEVHFGVP 91 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~ 91 (430)
..++.++|++.++++|+.+|+..-+ .++||++|..++.+++..|... -+++||.|++++++++|++++++||+
T Consensus 769 l~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cl 848 (1363)
T KOG3628|consen 769 LLTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACL 848 (1363)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHH
Confidence 3789999999999999999999743 7899999999999999999965 78999999999999999999999999
Q ss_pred hcCCeeeeccccCC------hhhHHHHHhhcCceEEEeccccHHHHHH--HHHHhhccCCCCCCCCeEEEecCCCCCCCc
Q 048242 92 MTGAVLNCINFRLN------PLNVAIILGHAEAALVFVDQQYFALAEE--ALKIMEGKSEGLFKPPVLIVIGDETCDRAP 163 (430)
Q Consensus 92 ~~G~~~~~l~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (430)
.+|.+++|+.|... ...+..+++..+++.|+++......++. +.....+ ...+.++.+++...
T Consensus 849 y~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~-----s~~p~i~~~~~~~~---- 919 (1363)
T KOG3628|consen 849 YLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQ-----SAIPLILVLPKLPE---- 919 (1363)
T ss_pred hcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhh-----hcchhhhcccccch----
Confidence 99999999988443 3568889999999999999876554432 2222111 12223333333210
Q ss_pred ccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEecc
Q 048242 164 LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTL 243 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 243 (430)
..........+... ...+-...++.+|++-+.--++|.--++.++|..+++.+...+....+.+..-++.+.
T Consensus 920 ------t~~k~~~~~~k~~~--~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~ 991 (1363)
T KOG3628|consen 920 ------TIRKRKKNIKKLNT--PTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCS 991 (1363)
T ss_pred ------hhhhhhhhhhccCC--CCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEe
Confidence 00011111111111 1111234567899999999999999999999999999999999999888888777777
Q ss_pred CchhhhhhH-HHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCce------
Q 048242 244 PIFHGNGWC-FTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHV------ 312 (430)
Q Consensus 244 pl~h~~gl~-~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~l------ 312 (430)
+.+...|+. ..+...+.|...+++++ .++..+++.|++|+|.-++.+=..+..+.+.......+ ++..
T Consensus 992 ~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~en-l~~~gnn~s~ 1070 (1363)
T KOG3628|consen 992 SPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVEN-LSKRGNNTSS 1070 (1363)
T ss_pred cCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccch-hhhhhccccc
Confidence 776666666 46666788998888864 58999999999999999999999898888765544333 3211
Q ss_pred eEEeecCCCCCHHHHHHHHh----cCcE---EEeeecCccccccccccccCCCCCCCChhhh----------------hh
Q 048242 313 VNVNTGGSPPPPPILLAMSQ----KGFR---VTHVYGLSEINGPATVCAWNPNWDSLPFEAQ----------------AR 369 (430)
Q Consensus 313 r~v~~~G~~l~~~~~~~~~~----~~~~---v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~----------------~~ 369 (430)
.+++..-+.....+.+-+.+ .|.. +...|+.---..++.....+.+.-....+.. ..
T Consensus 1071 s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l 1150 (1363)
T KOG3628|consen 1071 SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSL 1150 (1363)
T ss_pred ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCcc
Confidence 34444455555555554442 2322 4455655443333333222221111001110 11
Q ss_pred hccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccC
Q 048242 370 LNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLK 418 (430)
Q Consensus 370 ~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~ 418 (430)
.....|+..+++ ++.|++||+..+|.+| +.||||++|.+-+.+|+.
T Consensus 1151 ~L~dSG~~~~~~-~i~IvnPEtk~pc~dg--e~GEIW~~S~hnA~~~~~ 1196 (1363)
T KOG3628|consen 1151 LLYDSGKLPVYT-DIAIVNPETKGPCRDG--ELGEIWVNSAHNASCSFT 1196 (1363)
T ss_pred ccccCCcccccc-eeEEeCCccccccccC--CcceEEeccccccccccc
Confidence 112248888998 9999999999999999 999999999999998875
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=190.10 Aligned_cols=200 Identities=18% Similarity=0.185 Sum_probs=150.5
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHH---HHHhhcCCCCCCEEEeccCchhh-hhhHHHHHHHhhcceEEEeC
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL---NVVLTWGMKEGAVYLWTLPIFHG-NGWCFTWSLAALCGTSVMLR 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~---~~~~~~~~~~~~~~~~~~pl~h~-~gl~~~~~~l~~g~~~v~~~ 268 (430)
+.++++.+++||||||.||++.++|.++..... .....+++..+|++++..+..+. .++...+.+...|++++...
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 456788899999999999999999998855432 23344678889998887665433 33334455667788988887
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCC-CCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCccc
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEI 346 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~ 346 (430)
..++..+++.|+++++|+++++|+++..|.+.......+ ...+||.++++|+++++++.+.++ .+|+++++.||+||+
T Consensus 153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~ 232 (422)
T TIGR02155 153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEV 232 (422)
T ss_pred CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhh
Confidence 778899999999999999999999999988654332221 035899999999999999999998 679999999999998
Q ss_pred ccc-ccccccCCCCCCCChhhhhhhccccCCcc--ccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 347 NGP-ATVCAWNPNWDSLPFEAQARLNARQGVKC--MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 347 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~vG~~~--~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
++. +...+.. ...|.++ +.+ .++|+|++++++++.| +.|||++++.
T Consensus 233 ~~~~~~~~~~~---------------~~~g~~~~~~~~-~~eivd~~~g~~v~~G--e~Gelvvt~~ 281 (422)
T TIGR02155 233 IGPGVAMECVE---------------TQDGLHIWEDHF-YPEIIDPHTGEVLPDG--EEGELVFTTL 281 (422)
T ss_pred cCCceeecccc---------------cCCCceEecCee-EEEEECCCCCCCCCCC--CeeEEEEecC
Confidence 532 2221100 0113333 245 6789998779999988 8999999984
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=182.43 Aligned_cols=148 Identities=21% Similarity=0.228 Sum_probs=124.1
Q ss_pred CeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCC--CCEEEeccCchhhhhhH-HHHHHHhhcceEEEeCCCCH
Q 048242 196 QSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKE--GAVYLWTLPIFHGNGWC-FTWSLAALCGTSVMLRQASA 272 (430)
Q Consensus 196 ~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~~~~~~pl~h~~gl~-~~~~~l~~g~~~v~~~~~~~ 272 (430)
..++++|||||||.||+|+++|+++.+.+......+++.. .+++++.+|++|.+|+. ..+.++..|+++++...+++
T Consensus 96 ~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~ 175 (386)
T TIGR02372 96 TARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPA 175 (386)
T ss_pred CceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCCh
Confidence 4678999999999999999999999988887777777643 46799999999999976 46667788999999888888
Q ss_pred HHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCc-EEEeeecCcccccccc
Q 048242 273 KAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGF-RVTHVYGLSEINGPAT 351 (430)
Q Consensus 273 ~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~ 351 (430)
..+++.++.+ |+++++|.+++.+.+.. .+ ++++|. +++|+++++++.+.+++++. .+++.||+||+++++.
T Consensus 176 ~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~-l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~ 247 (386)
T TIGR02372 176 SGIMRHARPG--DLIVGTPFIWEQLADLD----YR-LPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGL 247 (386)
T ss_pred HHHHHhhccC--CEEEECcHHHHHHHhhC----cC-CCccee-EecCCCCCHHHHHHHHHhcccchhheecccccccccc
Confidence 8888887654 89999999999998753 23 677886 67899999999999987764 6999999999987554
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=182.15 Aligned_cols=196 Identities=16% Similarity=0.127 Sum_probs=146.9
Q ss_pred CCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHH-HHHHHhhcceEEEe
Q 048242 192 RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCF-TWSLAALCGTSVML 267 (430)
Q Consensus 192 ~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~ 267 (430)
.+.++++.+.+||||||.||+|.+||+++......... ..+++.+|+++...+..+..+... .+.+...|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 34568889999999999999999999998665544333 347889999999988876655543 44456677776543
Q ss_pred CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCC-CCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCcc
Q 048242 268 RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSE 345 (430)
Q Consensus 268 ~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE 345 (430)
.. ....++.|.++++|.+.++|+.+..+.........+ ...+||.+++||+++++++.+.++ .+|+++++.||+||
T Consensus 163 ~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE 240 (445)
T TIGR03335 163 GK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTE 240 (445)
T ss_pred Cc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhh
Confidence 32 345689999999999999999888776543322211 046899999999999999999998 56999999999999
Q ss_pred ccccccccccCCCCCCCChhhhhhhccccCCcc--ccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 346 INGPATVCAWNPNWDSLPFEAQARLNARQGVKC--MCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~--~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
++ .+..|.. ..|..+ +.+ .++|+|++++.++++| +.|||++++-
T Consensus 241 ~~-~~~~c~~-----------------~~g~h~~~d~~-~vEIvDp~~~~~vp~G--e~GELvvT~L 286 (445)
T TIGR03335 241 GT-MCGECQA-----------------VAGLHVPEDLV-HLDVYDPRHQRFLPDG--ECGRIVLTTL 286 (445)
T ss_pred hh-heEEecC-----------------CCCccccCCce-EEEEEcCCCCCCCcCC--CceEEEEEec
Confidence 85 3222211 113333 345 6899999988889988 8999999975
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=146.24 Aligned_cols=199 Identities=15% Similarity=0.185 Sum_probs=152.6
Q ss_pred CCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCc-hhhhhhHHHHHHHhhcceEEEe
Q 048242 192 RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVML 267 (430)
Q Consensus 192 ~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl-~h~~gl~~~~~~l~~g~~~v~~ 267 (430)
.+.+++..|-.||||||+|+-+..++..+......+.. ..+...+|++..+... .+..|+..-+.+-..|++++-.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 44566676888999999999999999987555444433 3477888987776663 2334445555555567777766
Q ss_pred CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCC--CCCCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCc
Q 048242 268 RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT--ILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLS 344 (430)
Q Consensus 268 ~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~--~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~t 344 (430)
..-+...-++.+.++++|++.++|+.+..+.+...... .+ -.+||.+++|+|+++++.++.+. .+|+.+++.||+|
T Consensus 167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~-~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGlt 245 (438)
T COG1541 167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD-KLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLT 245 (438)
T ss_pred CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh-hcceeEEEEecccCCHHHHHHHHHHhCCceeeccccc
Confidence 66678899999999999999999999999998765553 22 46999999999999999999999 7899999999999
Q ss_pred cccccc-cccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 345 EINGPA-TVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 345 E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
|..++. ..|... ......-+.. .++|+||++++.+++| +.|||.++.
T Consensus 246 E~~g~g~~eC~~~---------------~glhi~eD~~-~~Ei~dP~t~e~l~dg--e~GelV~T~ 293 (438)
T COG1541 246 EGFGPGAGECTER---------------NGLHIWEDHF-IFEIVDPETGEQLPDG--ERGELVITT 293 (438)
T ss_pred cccCCcccccccc---------------cCCCcchhhc-eeeeecCCcCccCCCC--CeeEEEEEe
Confidence 997663 333221 1122344445 6899999999999999 889999886
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-16 Score=153.72 Aligned_cols=391 Identities=14% Similarity=0.023 Sum_probs=262.2
Q ss_pred CCCcCCCCCCCCCCCCHHHHHHHHHhhCCCcceEEECC-----eeeeHHHHHHHHHHHHH-HHHHcCCCCCCeEEEEcCC
Q 048242 6 DIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVYES-----KHYTWQQTYQRCRRLAS-ALSQLSIGPGTAVSVLSPN 79 (430)
Q Consensus 6 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~-----~~~Ty~el~~~~~~la~-~L~~~gv~~g~~V~i~~~n 79 (430)
..+..++....+....+..+++....+++..+|.+.-+ ..+||..+..++.++|+ .|.+.|+.++|+|.++...
T Consensus 80 ~~~~~ntsss~~a~~d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~ 159 (1363)
T KOG3628|consen 80 INDPRNTSSSMMALTDIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRK 159 (1363)
T ss_pred cCCCCCCchhhhhhcchHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEh
Confidence 34556666666777778899988888888889988744 78999999999999999 6667799999999999765
Q ss_pred c--hhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCC
Q 048242 80 V--PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDE 157 (430)
Q Consensus 80 ~--~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 157 (430)
+ .++++..++|...|.+++|+.+..+.+++..+++....+++++.......+....... +....+
T Consensus 160 ~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~--------s~~k~v----- 226 (1363)
T KOG3628|consen 160 CEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV--------SLAKAV----- 226 (1363)
T ss_pred hhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc--------cHHHHH-----
Confidence 4 7999999999999999999999999999999999999999999876554333211000 000000
Q ss_pred CCCCCcccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH---------
Q 048242 158 TCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV--------- 228 (430)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~--------- 228 (430)
.++-..++-.....+....++..-. ..+|-||++++|.--|++.+|+ +..+.+.+.
T Consensus 227 -------------~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~ 291 (1363)
T KOG3628|consen 227 -------------AWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPAR 291 (1363)
T ss_pred -------------HhhhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHH
Confidence 0000000000001111111222222 8899999999999999999987 433322221
Q ss_pred -----------hhcCCCCCCEEEeccCchhhhhhHH-HHHHHhhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHH
Q 048242 229 -----------LTWGMKEGAVYLWTLPIFHGNGWCF-TWSLAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIV 293 (430)
Q Consensus 229 -----------~~~~~~~~~~~~~~~pl~h~~gl~~-~~~~l~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~ 293 (430)
..+++..++.++.........||.. .+.++++|.+.+.+++ +.+-.+.+.+-+++.+++..--..
T Consensus 292 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~ 371 (1363)
T KOG3628|consen 292 FAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAG 371 (1363)
T ss_pred HHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccc
Confidence 1223455666666666666677764 7778889999999986 678889999999999999876555
Q ss_pred HHHHHcCCCC-----------CCCCCCCceeEEeecCCCCCHHHHHHHH-----hcCc------------------EEEe
Q 048242 294 LNSIVNAPPE-----------DTILPLPHVVNVNTGGSPPPPPILLAMS-----QKGF------------------RVTH 339 (430)
Q Consensus 294 l~~l~~~~~~-----------~~~~~l~~lr~v~~~G~~l~~~~~~~~~-----~~~~------------------~v~~ 339 (430)
|.+....... +..+ +++||.+++....+..+...... .+|. -...
T Consensus 372 Lkq~~~ny~~~p~a~~s~~k~~t~d-~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is 450 (1363)
T KOG3628|consen 372 LKQPVYNYQEDPKATLSFKKYKTPD-LSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPIS 450 (1363)
T ss_pred cCcccccccCCcccccchhhccCCC-ccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEE
Confidence 5555433211 1133 88999999988888876544332 2221 1112
Q ss_pred eecCccccccccccccCC---CC------------C--CCChhhhh--hhccccCCccccccceEEeeCCCCCCCCCCCC
Q 048242 340 VYGLSEINGPATVCAWNP---NW------------D--SLPFEAQA--RLNARQGVKCMCLEGLDVLDTKTNQPIPADGK 400 (430)
Q Consensus 340 ~YG~tE~~~~~~~~~~~~---~~------------~--~~~~~~~~--~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~ 400 (430)
.=+++|.+.......... .. . +...+... .....+|+..++-..+.|+++++.++|..+
T Consensus 451 ~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~-- 528 (1363)
T KOG3628|consen 451 FKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTD-- 528 (1363)
T ss_pred eccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccC--
Confidence 222244432222211100 00 0 00001111 112236777777667889999999999999
Q ss_pred ceeEEEEecCcccccccCCcccchHhh
Q 048242 401 TIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 401 ~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
++|||||.++++..+||.-+.+|...|
T Consensus 529 eVGEIwVsS~~~~~~~~al~~~t~~~F 555 (1363)
T KOG3628|consen 529 EVGEIWVSSNSLGKLFYALDKQTENTF 555 (1363)
T ss_pred cceeEEEecCCcccceeeccccccceE
Confidence 999999999999999999988887776
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-16 Score=158.07 Aligned_cols=307 Identities=15% Similarity=0.082 Sum_probs=204.8
Q ss_pred CHHHHHHHHHhhCCCcceEEECC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 21 TPLWFLERAATVHPTRKSVVYES--------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 21 t~~~~l~~~~~~~p~~~a~~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
++.+.+.+.+...|.+++..+-. .++||++....++.+++.|...|.-.|+.|++++..+.++++..+++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~ 116 (1032)
T KOG1178|consen 37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA 116 (1032)
T ss_pred chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence 45556778888888888877521 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCC----hhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccc
Q 048242 93 TGAVLNCINFRLN----PLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYAL 168 (430)
Q Consensus 93 ~G~~~~~l~~~~~----~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (430)
+|..+++++|.++ ++++..+.....- ...+.... ..+........ .....+.
T Consensus 117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s----~~~~i~~~-l~i~~~~~~~~---~~~~sv~---------------- 172 (1032)
T KOG1178|consen 117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTS----VELEIVRR-LNIIDILLNSL---FPKLSVE---------------- 172 (1032)
T ss_pred cceEEEEecCCCcccccchHHHhhhhhhee----ccceehhh-hhhHHHHhhcc---ccccchh----------------
Confidence 9999999999999 2221111111100 00000000 00000000000 0000000
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCc-hh
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI-FH 247 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl-~h 247 (430)
...-.|..+........ ..-.-+++.+.+.||||+||.||+|..+|..+.+...|....+.++..+.+-....+ +|
T Consensus 173 -~~~~~f~~~~~~~~~r~--~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~ 249 (1032)
T KOG1178|consen 173 -TIADSFQMVLHNEDTRE--IRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFD 249 (1032)
T ss_pred -hccchhhhhhccCCCcc--eeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecc
Confidence 00011111111111111 012346778999999999999999999999999999999999999888876333334 44
Q ss_pred hhhhHHHHHHHhhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC-------------CCCCCCc
Q 048242 248 GNGWCFTWSLAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED-------------TILPLPH 311 (430)
Q Consensus 248 ~~gl~~~~~~l~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~-------------~~~~l~~ 311 (430)
..-.......+..|+.++.+.. .++..+.+.+++|+++..+.+|++.++++...... ... .+.
T Consensus 250 d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~-~~~ 328 (1032)
T KOG1178|consen 250 DTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTK-RSC 328 (1032)
T ss_pred cchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhccccccc-chh
Confidence 4444445555555665666532 34789999999999999999999988887643221 111 358
Q ss_pred eeEEeecCCCCCHHHHHHHH-hc--CcEEEeeecCccccccccccccC
Q 048242 312 VVNVNTGGSPPPPPILLAMS-QK--GFRVTHVYGLSEINGPATVCAWN 356 (430)
Q Consensus 312 lr~v~~~G~~l~~~~~~~~~-~~--~~~v~~~YG~tE~~~~~~~~~~~ 356 (430)
|+...++|++....+...+. .+ ++.... |+.++..+..++....
T Consensus 329 Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~-y~s~~~~~~~s~~~~~ 375 (1032)
T KOG1178|consen 329 LKLVVLGGEPLLVSLYTSTFDLLAEIFFGLP-YLSTDPTGLVSYDDFS 375 (1032)
T ss_pred heeeeecCCccchhhhhhhhhcccceeeeec-ccCCCCccceeHHhhC
Confidence 99999999999998888554 33 233333 9999888888776554
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=103.29 Aligned_cols=148 Identities=16% Similarity=0.068 Sum_probs=99.2
Q ss_pred eeEEEeCCCCCCCCceEEechHHHHHHHHH-HHh--hcCCCCCCEEEec--cCchhhhhhHHHHHHHhhcce-EEEeC-C
Q 048242 197 SIALGYTSGTTANPKGVLVSHRAAYLMSLN-VVL--TWGMKEGAVYLWT--LPIFHGNGWCFTWSLAALCGT-SVMLR-Q 269 (430)
Q Consensus 197 ~~~i~~TSGttG~pK~v~~t~~~l~~~~~~-~~~--~~~~~~~~~~~~~--~pl~h~~gl~~~~~~l~~g~~-~v~~~-~ 269 (430)
-..+..||||||.|-.+..+.......... ... ..++..++++... .+. +.+ ..+..... +-.++ .
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly------~~~~~~~~~~~~~~l~ 173 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY------QSVNNRWISLDFFDLL 173 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH------HHHHhccceeeecCCC
Confidence 344667999999999999998865322221 111 1234444443333 211 211 11111111 22222 2
Q ss_pred CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCccccc
Q 048242 270 ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLSEING 348 (430)
Q Consensus 270 ~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~tE~~~ 348 (430)
.+.+..++.|.+++|+++.++|+.+..|.+.......+ .+++.++++||.+++...+.++ .||+++++.||+|| |.
T Consensus 174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~--~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~ 250 (430)
T TIGR02304 174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT--IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GF 250 (430)
T ss_pred cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC--CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hh
Confidence 46789999999999999999999999999865443322 3789999999999999999998 67999999999999 55
Q ss_pred cccccc
Q 048242 349 PATVCA 354 (430)
Q Consensus 349 ~~~~~~ 354 (430)
++..|.
T Consensus 251 la~eC~ 256 (430)
T TIGR02304 251 LASTCR 256 (430)
T ss_pred eEEecC
Confidence 544443
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.2e-06 Score=76.40 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=112.6
Q ss_pred CCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHH---HHhhcCCCC--CCEEEeccCchhh-hhhH----HHHHHHhhc
Q 048242 192 RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLN---VVLTWGMKE--GAVYLWTLPIFHG-NGWC----FTWSLAALC 261 (430)
Q Consensus 192 ~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~---~~~~~~~~~--~~~~~~~~pl~h~-~gl~----~~~~~l~~g 261 (430)
.+++++..++.||||||.|--+.+.+..+...... ....+.... ...++...|-... ..+. ..+.....+
T Consensus 86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 34566778899999999987677766655444322 222222222 2223333343211 1111 111122233
Q ss_pred ceEEEeC--CCCHHHHHHHH----HhhCceEEeeccHHHHHHHcCCCCCCCC-CCC-ceeEEeecC------CCCCH-HH
Q 048242 262 GTSVMLR--QASAKAIYKAI----AEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLP-HVVNVNTGG------SPPPP-PI 326 (430)
Q Consensus 262 ~~~v~~~--~~~~~~~~~~l----~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~-~lr~v~~~G------~~l~~-~~ 326 (430)
.. .... .++...++..+ .+.++..+++.|.++..++...+..... .++ ..+.+-.|| +.++. ++
T Consensus 166 ~~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef 244 (365)
T PF04443_consen 166 SR-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEF 244 (365)
T ss_pred ce-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHH
Confidence 44 3333 35676666655 3566889999998777666533322221 032 344444454 45654 56
Q ss_pred HHHHH-hcCc----EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCc
Q 048242 327 LLAMS-QKGF----RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKT 401 (430)
Q Consensus 327 ~~~~~-~~~~----~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~ 401 (430)
.+.++ .+|+ ++++.||+||.......+.. --.++|.. +.|+|+++.++++.| +
T Consensus 245 ~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~------------------~~~~~p~w--V~iRDp~tl~~~~~G--e 302 (365)
T PF04443_consen 245 YARLQEVFGVIPIENIYDMYGMTELNSQAYECGH------------------GHFHVPPW--VIIRDPETLEPLPPG--E 302 (365)
T ss_pred HHHHHHHHCCCCHHHeeeeeeccccchhheeCCC------------------CcccCCCe--EEEECCCCCcCCCCC--C
Confidence 66666 4787 59999999997654443321 11244443 778899999999998 8
Q ss_pred eeEEEEecC
Q 048242 402 IGEVVMRGN 410 (430)
Q Consensus 402 ~Gel~v~g~ 410 (430)
+|-|.+=.+
T Consensus 303 ~Gli~vidl 311 (365)
T PF04443_consen 303 TGLIQVIDL 311 (365)
T ss_pred eeEEEEEcc
Confidence 999987765
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.056 Score=51.20 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=77.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCch--hHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP--AMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
.-+|+.|+...+..+|+.|...|..+||+|..+..-+. .-+...+|+.++|+.++|+.+. .-+....+++..++.+|
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 45999999999999999999999999999888876332 2278899999999999999873 34567788999999999
Q ss_pred EeccccHHHHHHHHHHh
Q 048242 122 FVDQQYFALAEEALKIM 138 (430)
Q Consensus 122 i~~~~~~~~~~~~~~~~ 138 (430)
.+..++...+.+.....
T Consensus 187 ~~tps~~l~lae~~~~~ 203 (438)
T COG1541 187 AATPSYLLYLAEEAEEE 203 (438)
T ss_pred EEChHHHHHHHHHHHHc
Confidence 99998776655554443
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.3 Score=41.04 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=68.1
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCch--hHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP--AMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|..++......++..+...|+++||++....+.+. ......++....|+.++++++.. .+.+...+++.++.++
T Consensus 93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l 171 (422)
T TIGR02155 93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII 171 (422)
T ss_pred eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence 45788888777777788888889999998877665443 23334677889999999887654 5778889999999999
Q ss_pred EeccccHHHHHH
Q 048242 122 FVDQQYFALAEE 133 (430)
Q Consensus 122 i~~~~~~~~~~~ 133 (430)
+.....+..+.+
T Consensus 172 ~~~Ps~l~~L~~ 183 (422)
T TIGR02155 172 MVTPSYMLNLLE 183 (422)
T ss_pred EEcHHHHHHHHH
Confidence 998877665543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=90.70 E-value=2.7 Score=41.04 Aligned_cols=83 Identities=7% Similarity=0.003 Sum_probs=63.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchh--HHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA--MYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|.+++...+...+..+...|+++||++.++.+.+.. ....++++...|+.++|... ......+++..++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 458999999988888888888899999999988766543 23456788999998876643 2345678899999998
Q ss_pred EeccccHH
Q 048242 122 FVDQQYFA 129 (430)
Q Consensus 122 i~~~~~~~ 129 (430)
+.......
T Consensus 181 ~~~ps~ll 188 (445)
T TIGR03335 181 VASVFKLL 188 (445)
T ss_pred EECHHHHH
Confidence 87665433
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=82.78 E-value=30 Score=35.70 Aligned_cols=100 Identities=16% Similarity=0.086 Sum_probs=71.1
Q ss_pred EEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEe-CCCCHHHHHHHHHhhCceEEe
Q 048242 213 VLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVML-RQASAKAIYKAIAEHGVTNFC 288 (430)
Q Consensus 213 v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~-~~~~~~~~~~~l~~~~vt~~~ 288 (430)
..+|++.+...+..+.. ..++.++|++...++..-- .+...++++..|+..+.+ +...+.++...+++.++.+++
T Consensus 77 ~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~ 155 (651)
T PLN02736 77 KWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPE-WLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIF 155 (651)
T ss_pred EEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEE
Confidence 44788888766655443 4588999999888876432 233456667788888866 457899999999999999999
Q ss_pred eccHHHHHHHcCCCCCCCCCCCceeEEeec
Q 048242 289 AAPIVLNSIVNAPPEDTILPLPHVVNVNTG 318 (430)
Q Consensus 289 ~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~ 318 (430)
..+..+..+...... ++.++.++..
T Consensus 156 ~~~~~~~~~~~~~~~-----~~~l~~ii~~ 180 (651)
T PLN02736 156 CVPQTLNTLLSCLSE-----IPSVRLIVVV 180 (651)
T ss_pred ECHHHHHHHHHHhhc-----CCCceEEEEE
Confidence 998887766553321 4556665543
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=82.59 E-value=8.3 Score=33.65 Aligned_cols=76 Identities=13% Similarity=0.136 Sum_probs=53.9
Q ss_pred CCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCch--hHHHHHHHhhhcCCeeeeccccCChhhHHH
Q 048242 34 PTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP--AMYEVHFGVPMTGAVLNCINFRLNPLNVAI 111 (430)
Q Consensus 34 p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~ 111 (430)
++.+|++....-.|.+.+...+ ...|+.++|++. .+|-.. -....+++++..|++.+.+ +.++++.+-.
T Consensus 149 ~~D~a~l~yTsg~~~~~~~~~~-------~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~ 219 (227)
T TIGR03089 149 ATAPALVAGGGEWTGAELVAAA-------RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQ 219 (227)
T ss_pred CCcceeeeccccccHHHHHHHH-------hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHH
Confidence 3455666555434444443322 556889999988 877654 3445789999999998887 6889999888
Q ss_pred HHhhcCc
Q 048242 112 ILGHAEA 118 (430)
Q Consensus 112 ~l~~~~~ 118 (430)
.+++.++
T Consensus 220 ~i~~~~v 226 (227)
T TIGR03089 220 IAETERV 226 (227)
T ss_pred HHHhhcC
Confidence 8888775
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=81.29 E-value=13 Score=36.64 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=64.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCch--hHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP--AMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|++.+...+..+...+ ++++++++...++-.. .+...+++++..|+.+++. +..++..+...+++.++.++
T Consensus 184 v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~ 259 (513)
T PRK07656 184 AMLTHRQLLSNAADWAEYL---GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-PVFDPDEVFRLIETERITVL 259 (513)
T ss_pred EEEecHHHHHHHHHHHHhh---CCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-CcCCHHHHHHHHHHhCCeEE
Confidence 5689998877666554443 7889999888777543 3345678999999988765 56788889999999999999
Q ss_pred EeccccHHHHH
Q 048242 122 FVDQQYFALAE 132 (430)
Q Consensus 122 i~~~~~~~~~~ 132 (430)
+.....+..+.
T Consensus 260 ~~~p~~~~~l~ 270 (513)
T PRK07656 260 PGPPTMYNSLL 270 (513)
T ss_pred echHHHHHHHH
Confidence 88777655443
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=80.26 E-value=21 Score=34.16 Aligned_cols=88 Identities=13% Similarity=0.034 Sum_probs=64.5
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.++.++++. -....+|++.+...+..+.. ..+++.++++....+.. ...+...++++..|+..+.++
T Consensus 8 ~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~-~~~~~~~~A~~~~G~~~v~l~~ 78 (417)
T PF00501_consen 8 YPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNS-IEFVVAFLACLRAGAIPVPLDP 78 (417)
T ss_dssp STTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSS-HHHHHHHHHHHHTT-EEEEEET
T ss_pred CCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCcc-ceeeeeeccccccccccccccc
Confidence 466777766 23457888888666554443 45788899888887764 333556777778898888885
Q ss_pred CCCHHHHHHHHHhhCceEEee
Q 048242 269 QASAKAIYKAIAEHGVTNFCA 289 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~ 289 (430)
......+...+++.++.+++.
T Consensus 79 ~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 79 SLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp TSSHHHHHHHHHHHTESEEEE
T ss_pred ccccccccccccccceeEEEE
Confidence 578899999999999999996
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 430 | ||||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 2e-37 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 2e-21 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 5e-19 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 7e-19 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-12 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-10 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 5e-10 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 1e-09 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-09 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-09 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-09 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 3e-09 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 3e-09 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 5e-09 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 8e-09 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 1e-08 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 1e-08 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 2e-08 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 2e-08 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 3e-07 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 2e-06 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 3e-06 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 2e-05 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 3e-05 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 3e-05 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 5e-05 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 5e-05 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 5e-05 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 5e-05 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 5e-05 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 5e-05 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 1e-04 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-04 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 2e-04 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 2e-04 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 3e-04 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 8e-04 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 8e-04 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 9e-04 |
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 492 bits (1268), Expect = e-172
Identities = 118/435 (27%), Positives = 180/435 (41%), Gaps = 32/435 (7%)
Query: 3 PQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVVY----ESKHYTWQQTYQRCRRL 58
++ P + L FLERAA + ++ V E T+ + YQR RRL
Sbjct: 2 EGERMNAFP-STMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRL 60
Query: 59 ASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEA 118
L L +G G V+ L N E +F VP GAVL+ N RL+P +A IL HAE
Sbjct: 61 MGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAED 120
Query: 119 ALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178
++ D L E ++ +V+ ++ + G YE+
Sbjct: 121 KVLLFDPNLLPLVEAIRGELKT-------VQHFVVMDEKAPE----------GYLAYEEA 163
Query: 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT--WGMKEG 236
L E + + YT+GTT PKGV+ SHRA L SL L + E
Sbjct: 164 LGEEADPVRV----PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 219
Query: 237 AVYLWTLPIFHGNGWCFTWSLAALCGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLN 295
V L +P+FH N WC ++ + V+ + ++ + GVT P V
Sbjct: 220 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWL 279
Query: 296 SIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAW 355
++ + L + + GGS P ++ + G V YGL+E +
Sbjct: 280 ALADYLESTG-HRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFV 338
Query: 356 NPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKG 415
+ +SL E + L A+ G+ + L L V D +P+P DGK +GEV ++G + G
Sbjct: 339 KSHLESLSEEEKLTLKAKTGLP-IPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGG 396
Query: 416 YLKNPKANEEAFANG 430
Y N +A A
Sbjct: 397 YYGNEEATRSALTPD 411
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 279 bits (716), Expect = 1e-89
Identities = 67/406 (16%), Positives = 138/406 (33%), Gaps = 36/406 (8%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
+L + A + ++ + YT+Q Y LA L + V + N
Sbjct: 6 WLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLK---AYQQSRVGLYIDNSIQSI 62
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
+ + + IN RL P + + + L+F + + + +
Sbjct: 63 ILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL-----DD 117
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTS 204
+ I + ++Y S E ++ P + ++ +TS
Sbjct: 118 IEFAGRDITTNGLLDNTMGIQYDTS-----NETVVPKESPSNILNTSFNLDDIASIMFTS 172
Query: 205 GTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTS 264
GTT K V + R Y ++ + G +L LPI+H +G T
Sbjct: 173 GTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTV 232
Query: 265 VMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324
++ + +A+ I I +T+ P LN ++ + ++ + GG+
Sbjct: 233 RIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP----YNLQKILLGGAKLSA 288
Query: 325 PILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGL 384
++ Q + + +G++E P AR + G+ ++ +
Sbjct: 289 TMIETALQYNLPIYNSFGMTETCSQFLTAT--------PEMLHARPDT-VGMPSANVD-V 338
Query: 385 DVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+ + + + GE++++G VM GYL F NG
Sbjct: 339 KIKN--------PNKEGHGELMIKGANVMNGYLYPTDL-TGTFENG 375
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 4e-87
Identities = 92/409 (22%), Positives = 150/409 (36%), Gaps = 40/409 (9%)
Query: 24 WFLERAATVHPTRKSVV--YESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP 81
W L + ATV P ++ V T+ Q R A L+ L I G V++L PN
Sbjct: 20 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 79
Query: 82 AMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGK 141
+ +G GAV IN RL V+ IL + + +V + +
Sbjct: 80 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIR------ 133
Query: 142 SEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALG 201
P + G + L + + + ++ +
Sbjct: 134 -AQADPPGTVTDWI---------------GADSLAERLRSAAADEPAVECGGD-DNLFIM 176
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC 261
YTSGTT +PKGV+ +H + + + + T ++ L LP+FH A
Sbjct: 177 YTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRG 236
Query: 262 GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSP 321
T + + Q A ++ I E V A P +LN + P + P TGG+P
Sbjct: 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL-DAPDFRYFITGGAP 295
Query: 322 PPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCL 381
P ++ + K V Y L+E G T+ +A + G M
Sbjct: 296 MPEALIKIYAAKNIEVVQGYALTESCGGGTLLL--------SEDALRKA-GSAGRATMFT 346
Query: 382 EGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+ + V GEVV++ ++++K Y P+A +AF NG
Sbjct: 347 D-VAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNG 390
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 6e-87
Identities = 94/411 (22%), Positives = 150/411 (36%), Gaps = 41/411 (9%)
Query: 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
T R A + P R + + + T + R RLAS L + + G V++LS N
Sbjct: 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN 65
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
M E+ V + GA+L +N+RLN +A +LG ++V Y + L
Sbjct: 66 CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL---- 121
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA 199
L IGD S ++ L P
Sbjct: 122 ---PSLGGVKKAYAIGDG-----------SGPFAPFKDLASDTPFS---APEFGAADGFV 164
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
+ +T+ P+G L+S + ++V W + E V L LP+FH G +L
Sbjct: 165 IIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQ 224
Query: 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGG 319
G SV+ + + I H VT +L +I++ L + V
Sbjct: 225 AGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPA---QLASLRAVTGLD 281
Query: 320 SPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCM 379
+P + +G SE +G +T P+ + + G
Sbjct: 282 TPETIE-RFEATCPNATFWATFGQSETSGLSTF---------APYRDRPK---SAGRPLF 328
Query: 380 CLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
+ V+D + P+P +GE+V+RG V KGY N A + AF NG
Sbjct: 329 WRT-VAVVDAEDR-PLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 1e-70
Identities = 85/418 (20%), Positives = 150/418 (35%), Gaps = 57/418 (13%)
Query: 25 FLERAATVHPTRKSVVY--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA 82
L RAAT P ++ T + R +A+ L + P V+V++PN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKS 142
+ + GAV +N RL +A ++ E + +A+ + G
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSG-- 123
Query: 143 EGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGY 202
+I +GD D P Y P R+ Q + Y
Sbjct: 124 ------ARIIFLGDLVRDGEPYSYG-----------------PPIEDPQREPAQPAFIFY 160
Query: 203 TSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGA--VYLWTLPIFHGNGW-CFTWSLAA 259
TSGTT PK ++ RAA L + G++ G V L +P++H G+ + A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED-TILPLPHVVNVNTG 318
L GT V++ + + + + VT+ A P L+++ A + L L + +V
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 319 GSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVK 377
G+ P +L + Q ++YG +E + + P
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAP-------------- 326
Query: 378 CMCLEGLDV----LDTKTNQPIPADGKTIGEVVMRG-NMVMKGYLKNPKANEEAFANG 430
+V + ++ + GE+++ + GYL P+A E +G
Sbjct: 327 ---GFFSEVRIVRIGGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQDG 379
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 1e-57
Identities = 78/404 (19%), Positives = 131/404 (32%), Gaps = 45/404 (11%)
Query: 28 RAATVHPTRKSVVYES-KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEV 86
P + ++ + ++ + R R+A+ L + G V+ + +
Sbjct: 10 FDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVL 69
Query: 87 HFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLF 146
+ G V +N + + AE +V D +
Sbjct: 70 YLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-------- 121
Query: 147 KPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGT 206
+ +G + G FA R A+ YTSGT
Sbjct: 122 -GATVETLGPD-------------GRGSLTDAAAGASEAFA-TIDRGADDLAAILYTSGT 166
Query: 207 TANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC--GTS 264
T KG ++SH SL +V W V + LPI+H +G F S L G+
Sbjct: 167 TGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGL-FVASNVTLFARGSM 225
Query: 265 VMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324
+ L + I +A T P ++ +P H+ +G +P
Sbjct: 226 IFLPKFDPDKILDLMAR--ATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLA 282
Query: 325 PILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEG 383
S K G V YG++E T S P++ A G +
Sbjct: 283 DTHREWSAKTGHAVLERYGMTET-NMNT---------SNPYDGDRVPGA-VGPALPGVS- 330
Query: 384 LDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
V D +T + +P IG + ++G V KGY + P+ + F
Sbjct: 331 ARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEF 372
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 1e-57
Identities = 78/414 (18%), Positives = 137/414 (33%), Gaps = 49/414 (11%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L R A +V+ + ++++ Q LA +L + I PG V NV +Y
Sbjct: 32 ILTRHA--ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELY 89
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ-----YFALAEEALKIME 139
F + G F + E AL+ D+Q +
Sbjct: 90 ITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFV---- 145
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA 199
V+ ++ D G + + +F P +
Sbjct: 146 ---TEHSSIRVVQLLNDS-------------GEHNLQDAINHPAEDFTA-TPSPADEVAY 188
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
+ GTT PK + +H Y V + YL +P H SL
Sbjct: 189 FQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGV 248
Query: 260 LC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP-PEDTILPLPHVVNVN 316
GT V+ SA + I +H V P ++ + A ++ L + +
Sbjct: 249 FLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQ 308
Query: 317 TGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQG 375
GG+ + + + G ++ V+G++E V + ++ ++ QG
Sbjct: 309 VGGARLSATLAARIPAEIGCQLQQVFGMAE----GLVNY------TRLDDSAEKIIHTQG 358
Query: 376 VKCMCLEGLDV--LDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
MC +V D P+P +G ++ RG +GY K+P+ N AF
Sbjct: 359 -YPMC-PDDEVWVADA-EGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAF 407
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 1e-56
Identities = 65/406 (16%), Positives = 136/406 (33%), Gaps = 31/406 (7%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L HP +++ + ++ + + LA+ L++ +G G V PNV Y
Sbjct: 35 ILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY 94
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
V F + G V+ + + + + L+ +Q+ + ++ +
Sbjct: 95 IVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQF--IDSLHDV 152
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTS 204
P +++++ + D L+ +ET F + +
Sbjct: 153 NLSPEIILMLNHQATDFGLLD------------WIETPAETFVDFSSTPADEVAFFQLSG 200
Query: 205 GTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC--G 262
G+T PK + +H G+ L LP H +L L G
Sbjct: 201 GSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGG 260
Query: 263 TSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPP 322
VM + I H V P + + + + + + GG+
Sbjct: 261 CVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-DQIQSLKLLQVGGASF 319
Query: 323 PPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCL 381
P + + + ++ V+G++E + + DS ++ QG
Sbjct: 320 PESLARQVPEVLNCKLQQVFGMAE-----GLVNYTRLDDSDE-----QIFTTQGRPISSD 369
Query: 382 EGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ + ++D + +P IG + RG GY ++P+ N + F
Sbjct: 370 DEIKIVDEQYR-EVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVF 412
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 2e-55
Identities = 77/419 (18%), Positives = 129/419 (30%), Gaps = 61/419 (14%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L A + R ++ + H+++++ R RLA+ +L I V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQ-----YFALAEEALKIME 139
EV F + GA+ + AEAA + Y +LA +
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQ---- 145
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA 199
L +IV G+ + E L P
Sbjct: 146 ---SKLPTLKNIIVAGEA------------EEFLPLEDLHTEPVKL----PEVKSSDVAF 186
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAA 259
L + G+T K + +H V + VYL LP+ H L
Sbjct: 187 LQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGV 246
Query: 260 LC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
L G V+ S + I VT P + ++A L + +
Sbjct: 247 LYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-DDLSSLQVLQV 305
Query: 318 GGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQG- 375
GG+ + G + V+G++E G + P E QG
Sbjct: 306 GGAKFSAEAARRVKAVFGCTLQQVFGMAE--GLVNYTRLDD-----PEEIIV---NTQGK 355
Query: 376 -------VKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ V D ++ + G ++ RG ++GY K + N +F
Sbjct: 356 PMSPYDESR--------VWDD-HDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASF 403
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 3e-53
Identities = 75/423 (17%), Positives = 144/423 (34%), Gaps = 61/423 (14%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
+L R + + + ++ T+ + +R RR ASAL L + P + ++ + A+
Sbjct: 28 YLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP 87
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
G G V N L P + +L H+ A V +AL+ E
Sbjct: 88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH---- 143
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA-LGYT 203
+++ + + +E+L++ P + IA Y+
Sbjct: 144 ---DGCQLIVSQP-------RESEPRLAPLFEELIDAAAPAAKAAATGCD--DIAFWLYS 191
Query: 204 SGTTANPKGVLVSHRAAYLMSLNVVLTW-GMKEGAVYLWTLPIFH----GNGWCFTWSLA 258
SG+T PKG + +H Y + G+ E V +F GNG F S+
Sbjct: 192 SGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251
Query: 259 ALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
A T++++ + +A AI+ + EH T F P + +++ +P + +
Sbjct: 252 A---TAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPA-RADVAIRICTS 307
Query: 318 GGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLP---------FEAQ 367
G P I + G + G +E + N +E +
Sbjct: 308 AGEALPREIGERFTAHFGCEILDGIGSTE-MLHIFLS--NRAGAVEYGTTGRPVPGYEIE 364
Query: 368 ARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ D + +P +G++ ++G Y N + + F
Sbjct: 365 ------------------LRD-EAGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATF 403
Query: 428 ANG 430
Sbjct: 404 LGE 406
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 8e-52
Identities = 74/413 (17%), Positives = 126/413 (30%), Gaps = 70/413 (16%)
Query: 24 WFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83
R ++ + + T+ + A + G V+V +
Sbjct: 27 ALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRI-----GGAGRVAVWATPAMET 81
Query: 84 YEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSE 143
+ G +N + +A IL + +LV
Sbjct: 82 GVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAP------------------- 122
Query: 144 GLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYT 203
E + G E + D + + YT
Sbjct: 123 ------------------PDAELPPALGALERVDVDVRARGAVPEDGADDGDPA-LVVYT 163
Query: 204 SGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALC-- 261
SGTT PKG ++ RA + W V + LP+FH +G L L
Sbjct: 164 SGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGL-VLGILGPLRRG 222
Query: 262 GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILP--LPHVVNVNTGG 319
G+ L + S + + + G T P + + I P D L L + +G
Sbjct: 223 GSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGS 281
Query: 320 SPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARL----NARQ 374
+ P ++ G RV YG++E T S+ + + R
Sbjct: 282 AALPVHDHERIAAATGRRVIERYGMTET-LMNT---------SVRADGEPRAGTVGVPLP 331
Query: 375 GVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
GV+ L +++ DG+++GE+ +RG + YL P A AF
Sbjct: 332 GVE------LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF 378
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 4e-51
Identities = 71/436 (16%), Positives = 150/436 (34%), Gaps = 75/436 (17%)
Query: 22 PLW-FLERAATVHPTRKSVVYE----SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVL 76
L + + ++ + Y++ + ++ L AL + +++
Sbjct: 24 SAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALC 83
Query: 77 SPNVPAMYEVHFGVPMTGAVLNCINFRLNPLN----VAIILGHAEAALVFVDQQYFALAE 132
S N + G + N + + LG ++ +VF ++
Sbjct: 84 SENCEEFFIPVIAGLFIGVGVAPT----NEIYTLRELVHSLGISKPTIVFSSKKGLDKVI 139
Query: 133 EALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDP------EF 186
K + ++++ + +G + ++ P F
Sbjct: 140 TVQK-------TVTTIKTIVILDSK---------VDYRGYQCLDTFIKRNTPPGFQASSF 183
Query: 187 AWKPPRDEWQSIALGYTSGTTANPKGVLVSHR---AAYLMSLNVVLTWGMKEGAVYLWTL 243
+ Q + +SG+T PKGV ++H + + + + + G L +
Sbjct: 184 KTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVV 243
Query: 244 PIFHGNGWCFTWSLAALC--GTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP 301
P HG G +L L VML + + K + ++ T+ P + + +
Sbjct: 244 PFHHGFG--MFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301
Query: 302 PEDTILPLPHVVNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCAWNPNW 359
+ L ++V + +GG+P + A++++ V YGL+E + P
Sbjct: 302 LLNK-YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET---TSAIIITPEG 357
Query: 360 DS--------LPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNM 411
D +P K V+D T + + + GEV ++G M
Sbjct: 358 DDKPGASGKVVP-----------LFKAK------VIDLDTKKSLGPN--RRGEVCVKGPM 398
Query: 412 VMKGYLKNPKANEEAF 427
+MKGY+ NP+A +E
Sbjct: 399 LMKGYVNNPEATKELI 414
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 7e-51
Identities = 89/450 (19%), Positives = 166/450 (36%), Gaps = 66/450 (14%)
Query: 1 MEPQNDI--------DDLPKNPANFTALTPLW-FLERAATVHPTRKSVV--YESKHYTWQ 49
M PQ + +PKN PL ++ + H ++ ++ YT+
Sbjct: 1 MNPQEEFIFRSKLPDIYIPKN-------LPLHSYVLENLSNHSSKPCLINGANGDVYTYA 53
Query: 50 QTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNV 109
RR+AS L+++ I G + + P+ P G GA++ N P +
Sbjct: 54 DVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAEL 113
Query: 110 AIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALS 169
A + A L+ Y+ ++ + + V ++ D D
Sbjct: 114 AKHAKASRAKLLITQACYYEKVKDFAR----------ESDVKVMCVDSAPD--------- 154
Query: 170 KGVTEYEKLLETGDPEFAWKPPRDEWQSIA-LGYTSGTTANPKGVLVSHR----AAYLMS 224
G + +L + + E + L Y+SGTT PKGV+++H+ +
Sbjct: 155 -GCLHFSELTQADENEA--PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQV 211
Query: 225 LNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCG-TSVMLRQASAKAIYKAIAEHG 283
V L LP+FH G +++ + ++ I ++
Sbjct: 212 DGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYK 271
Query: 284 VTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQK--GFRVTHVY 341
V+ P V+ SI +P D L + + +GG+P + + K R+ Y
Sbjct: 272 VSIAPVVPPVMMSIAKSPDLDK-HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330
Query: 342 GLSEINGPATVCAWNPNWDSLPFEAQA----RLNARQGVKCMCLEGLDVLDTKTNQPIPA 397
G++E V A + PF+ + + +K ++D +T +P
Sbjct: 331 GMTEA---GPVLAMCLAFAKEPFDIKPGACGTVVRNAEMK--------IVDPETGASLPR 379
Query: 398 DGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ GE+ +RG+ +MKGYL +P+A
Sbjct: 380 N--QPGEICIRGDQIMKGYLNDPEATSRTI 407
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 1e-50
Identities = 75/449 (16%), Positives = 154/449 (34%), Gaps = 59/449 (13%)
Query: 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVV-----YESKHYTWQQTYQRC 55
ME +I P T L +A + + + + T+ + ++
Sbjct: 1 MEDAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMS 60
Query: 56 RRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGH 115
RLA A+ + + + V S N + G G + N N + +
Sbjct: 61 VRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNI 120
Query: 116 AEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175
++ +VFV ++ K L +I++ + T
Sbjct: 121 SQPTVVFVSKKGLQKILNVQK-------KLPIIQKIIIMDSK-----TDYQGFQSMYTFV 168
Query: 176 EKLLETGDPEFAWKPPRDEWQS--IALGYTSGTTANPKGVLVSHR---AAYLMSLNVVLT 230
L G E+ + P + + +SG+T PKGV + HR + + + +
Sbjct: 169 TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG 228
Query: 231 WGMKEGAVYLWTLPIFHGNGWCFTWSLAALC--GTSVMLRQASAKAIYKAIAEHGVTNFC 288
+ L +P HG G +L L V++ + + +++ ++ + +
Sbjct: 229 NQIIPDTAILSVVPFHHGFG--MFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSAL 286
Query: 289 AAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEI 346
P + + + D L ++ + +GG+P + A++++ + YGL+E
Sbjct: 287 LVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTET 345
Query: 347 NGPATVCAWNPNWDS--------LPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPAD 398
+ P D +P + V+D T + + +
Sbjct: 346 ---TSAILITPEGDDKPGAVGKVVP-----------FFEAK------VVDLDTGKTLGVN 385
Query: 399 GKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
GE+ +RG M+M GY+ NP+A
Sbjct: 386 --QRGELCVRGPMIMSGYVNNPEATNALI 412
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 3e-50
Identities = 78/427 (18%), Positives = 157/427 (36%), Gaps = 57/427 (13%)
Query: 21 TPLW-FLERAATVHPTRKSVVYES--------KHYTWQQTYQRCRRLASALSQLSIGPGT 71
L ++ AA + +++ + + + + ++LAS +S+ + G
Sbjct: 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGE 78
Query: 72 AVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALA 131
V V PN + + A IN + IL +EA + V +
Sbjct: 79 HVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENF 138
Query: 132 EEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPP 191
+ L+ + V+G E V +++++G +F
Sbjct: 139 KPVLE--------KTGVERVFVVGGE--------------VNSLSEVMDSGSEDFE-NVK 175
Query: 192 RDEWQSIA-LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNG 250
+ + +A + YT GTT PKGV+++H +L + + G+ + +P+FH
Sbjct: 176 VNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAE 235
Query: 251 W-CFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP-PEDTILP 308
+ + V++ + + + + I ++ T A P LN +VN +
Sbjct: 236 FGLVNLMVTV-GNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD 294
Query: 309 LPHVVNVNTGGSPPPPPILLAMSQK-GFRVTHV-------YGLSEINGPATVCAWNPNWD 360
++ TG P P ++ + + + + +G++E T
Sbjct: 295 WSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTN------- 347
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
P + QGV +E L V+ + + + GE+V+RG + KGY K
Sbjct: 348 --PPLRLDKSTT-QGVPMSDIE-LKVISLEDGRELGVG--ESGEIVIRGPNIFKGYWKRE 401
Query: 421 KANEEAF 427
K N+E +
Sbjct: 402 KENQECW 408
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-44
Identities = 78/427 (18%), Positives = 150/427 (35%), Gaps = 53/427 (12%)
Query: 21 TPLW-FLERAATVHPTRKSVVYES--KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLS 77
L ++ + + T+ ++ YT+ + R++A+ +L + V +L
Sbjct: 61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLL 120
Query: 78 PNVPAMYEVHFGVPMTGAVLNCINFRLNPLN----VAIILGHAEAALVFVDQQYFALAEE 133
PN P GA NP +A + L+ + +Y +
Sbjct: 121 PNCPEFVLSFLAASFRGATATAA----NPFFTPAEIAKQAKASNTKLIITEARYVDKIKP 176
Query: 134 ALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRD 193
V++ I D P +G + +L ++ +
Sbjct: 177 LQNDD---------GVVIVCIDDNESVPIP------EGCLRFTELTQSTTEASEVIDSVE 221
Query: 194 EWQS--IALGYTSGTTANPKGVLVSHR----AAYLMSLNVVLTWGMKEGAVYLWTLPIFH 247
+AL Y+SGTT PKGV+++H+ + V L LP+FH
Sbjct: 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281
Query: 248 GNGWCFTWSLAALCG-TSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTI 306
G +++ + + + I VT P ++ +I + +
Sbjct: 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEK- 340
Query: 307 LPLPHVVNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPF 364
L + V +G +P + A++ K ++ YG++E GP + + PF
Sbjct: 341 YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEA-GPVLAM--SLGFAKEPF 397
Query: 365 EAQA----RLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNP 420
++ + +K ++D T + + GE+ +RG+ +MKGYL NP
Sbjct: 398 PVKSGACGTVVRNAEMK--------IVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNP 447
Query: 421 KANEEAF 427
A E
Sbjct: 448 AATAETI 454
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-32
Identities = 70/414 (16%), Positives = 139/414 (33%), Gaps = 75/414 (18%)
Query: 42 ESKHYTWQQTYQRCRRLASALSQ-LSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCI 100
+ + +++ + ++ A+ LS + G V+V+ P VP + V G G +
Sbjct: 70 KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPG 129
Query: 101 NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVL---IVIGDE 157
++ ++ L ++A + + +E + + P L +++ ++
Sbjct: 130 TIQMKSTDILYRLQMSKAKAIVAGD---EVIQEVDTVAS-------ECPSLRIKLLVSEK 179
Query: 158 TCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL-GYTSGTTANPKGVLVS 216
+CD G ++KLL Q + +TSGT+ PK S
Sbjct: 180 SCD----------GWLNFKKLLNEASTTHH--CVETGSQEASAIYFTSGTSGLPKMAEHS 227
Query: 217 HRAAYLMSLNVVLTWGMKEGAVYLWTLP-----IFHGNGWCFTWSLAALCGTSVMLRQA- 270
+ + L + G++ + WT+ + W+L A + +
Sbjct: 228 YSSLGLKAKMDAGWTGLQASDIM-WTISDTGWILNILCSLMEPWALGA---CTFVHLLPK 283
Query: 271 -SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSP-PPPPILL 328
I K ++ + + + APIV ++ PH+ N T G P +
Sbjct: 284 FDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSS--YKFPHLQNCVTVGESLLPETLEN 341
Query: 329 AMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEG----- 383
+Q G + YG +E V + G M G
Sbjct: 342 WRAQTGLDIRESYGQTETGLTCMVSKTMK--------------IKPG--YM---GTAASC 382
Query: 384 --LDVLDTKTNQPIPADGKTIGEVVMRGN-----MVMKGYLKNPKANEEAFANG 430
+ ++D K N +P T G++ +R + GY+ NP
Sbjct: 383 YDVQIIDDKGN-VLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGD 433
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 3e-26
Identities = 70/450 (15%), Positives = 142/450 (31%), Gaps = 104/450 (23%)
Query: 26 LERAATVHPTRKSVVYES-----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV 80
++ A P + ++++ K +T++ + A+ + IG G V + +
Sbjct: 62 VDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121
Query: 81 PAMYEVHFGVPMTGAVL---------NCINFRLNPLNVAIILGHAEAALVFVDQQYFALA 131
+ G+ GA+ I +R+ A ++ A
Sbjct: 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIE---------KAGLKMIVCI----AED 168
Query: 132 EEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPP 191
+ ++ E +E P +G + + G ++ K LE P F
Sbjct: 169 DVPEQVDEAHAECGDIPLKKAKVGGDVLE----------GWIDFRKELEESSPIFERPTG 218
Query: 192 RDEWQS---IALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTL--PIF 246
++ + ++SGT PK V + L +++ ++ +T+
Sbjct: 219 EVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH-YTVADS-- 275
Query: 247 HGNGWC-FTWS--LAAL-CG-TSVMLRQA--SAKAIYKAIAEHGVTNFCAAPIVLNSIVN 299
GW W G + AK + + +++GVT FCA P + ++
Sbjct: 276 ---GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK 332
Query: 300 APPEDTILP-LPHVVNVNTGGSPPPPPILLAMSQKGFRVTHV-----YGLSEINGPATVC 353
L + V G P P + + T + +G +E
Sbjct: 333 EDLSHYNFSTLKYAV---VAGEPLNPEVF----NRFLEFTGIKLMEGFGQTETV---VTI 382
Query: 354 AWNPNWDS--------LPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEV 405
A P + P G K ++++D + GE+
Sbjct: 383 ATFPWMEPKPGSIGKPTP-----------GYK------IELMDRDGR---LCEVGEEGEI 422
Query: 406 VMRGN-----MVMKGYLKNPKANEEAFANG 430
V+ + Y K+P+ EE + +G
Sbjct: 423 VINTMEGKPVGLFVHYGKDPERTEETWHDG 452
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 5e-26
Identities = 81/445 (18%), Positives = 143/445 (32%), Gaps = 76/445 (17%)
Query: 26 LERAATVHPTRKSVVY----ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP 81
+ A P +KS + + T++Q Q + +A+ L PG V +L
Sbjct: 17 VRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGL 76
Query: 82 AMYEVHFGVPMTGAV---LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIM 138
+ + G G + + I+ +++ +V + ++
Sbjct: 77 PLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIA---DHIKKFTADE 133
Query: 139 EGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSI 198
+ K P + + + L + +W+P + I
Sbjct: 134 LNTNPKFLKIPAIAL------ESIEL------------------NRSSSWQPTSIKSNDI 169
Query: 199 A-LGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYL-WTLPIFHGNGWCFTWS 256
A L YTSG+T +PKGV+VSH + ++ M + + W LP H G
Sbjct: 170 AFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSW-LPPHHDMGLIGCIL 228
Query: 257 LAALCGTSVMLRQASAKAIYK-------AIAEHGVTNFCAAP-----IVLNSIVNAPPED 304
G ++ S + + I ++ T +P + I E
Sbjct: 229 TPIYGGIQAIM--MSPFSFLQNPLSWLKHITKYKAT-ISGSPNFAYDYCVKRIREEKKEG 285
Query: 305 TILPLPHVVNVNTGGSPPPPPILL----AMSQKGFR---VTHVYGLSEINGPATVCAWNP 357
L L V G P + A + GFR YGL+E T
Sbjct: 286 --LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343
Query: 358 NWDSLPFEA------QARLNARQGVKCMCL-------EGLDVLDTKTNQPIPADGKTIGE 404
++ +L + L + + ++D T P D +GE
Sbjct: 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD--QVGE 401
Query: 405 VVMRGNMVMKGYLKNPKANEEAFAN 429
+ ++ N V KGY P+ AFA
Sbjct: 402 IWVQSNSVAKGYWNQPEETRHAFAG 426
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 76/470 (16%), Positives = 138/470 (29%), Gaps = 93/470 (19%)
Query: 11 PKNPANFTALTPLWFLERAATVHPTRKSVVY---------ESKHYTWQQTYQRCRRLASA 61
+ + A L A + P + + + TW Q Y+R +A
Sbjct: 20 HMSVRSLPAA-----LRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQE 74
Query: 62 LSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV---LNCINFRLNPLNVAIILGHAEA 118
LS+ G V + +P G G + L+ + +L +
Sbjct: 75 LSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSP 133
Query: 119 ALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178
+ + + + G P ++ V D L
Sbjct: 134 VAILTTSSAVDDVVQHV----ARRPGESPPSIIEV------DLLDL-------------- 169
Query: 179 LETGDPEFAWKPPRDEWQSIA-LGYTSGTTANPKGVLVSHR------AAYLMSLNVVLTW 231
D + DE+ S A L YTSG+T P GV++SH+ +
Sbjct: 170 ----DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDG 225
Query: 232 GMKEGAVYL-WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIY-------KAIAEHG 283
+ + W LP +H G L G +L S + +A
Sbjct: 226 IPPPNSALVSW-LPFYHDMGLVIGICAPILGGYPAVL--TSPVSFLQRPARWMHLMASDF 282
Query: 284 VTNFCAAP-----IVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILL----AMSQKG 334
F AAP + + L +++ + +G + ++
Sbjct: 283 HA-FSAAPNFAFELAARRTTDDDMAG--RDLGNILTILSGSERVQAATIKRFADRFARFN 339
Query: 335 FR---VTHVYGLSEINGPATVCAWNPNWDSLPFEAQA----------RLNARQGVKCMCL 381
+ + Y L+E +++ F+ ++ A + M
Sbjct: 340 LQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP 399
Query: 382 EGLDVL--DTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFAN 429
V D+ T P T+GE+ + G+ V GY + P +E F
Sbjct: 400 RSPIVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGG 447
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 26/164 (15%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTW----GMKEGAVYLWTLPI-FHGNGWCFTWS 256
YTSGTT PKG + +H + ++ + +L F + F S
Sbjct: 614 YTSGTTGKPKGNITTHAN-----IQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYAS 668
Query: 257 LAALCGTSVMLR----QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHV 312
+ L +++ + + I + V A + N + +A + + +
Sbjct: 669 M--LNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW----MKGL 722
Query: 313 VNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCA 354
+ GG P + + ++ + YG +E TV A
Sbjct: 723 RCILFGGERASVPHVRKALRIMGPGKLINCYGPTE----GTVFA 762
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 3e-11
Identities = 32/274 (11%), Positives = 67/274 (24%), Gaps = 49/274 (17%)
Query: 175 YEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHR-----AAYLMSLNVVL 229
L + + GTT PK V+ ++ MS
Sbjct: 71 ISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG--YQ 128
Query: 230 TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAE-------- 281
+ L +P A G + + ++++E
Sbjct: 129 HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRK 188
Query: 282 ---------------HGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPI 326
+ P VL ++ PE + + + GG+
Sbjct: 189 YTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR-PEVVLQMKQSLAQITLGGTELNLDE 247
Query: 327 LLAMSQK---GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEG 383
+ ++ + + YG + G + + +
Sbjct: 248 IKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIY-----------DSFSPFIT 296
Query: 384 LDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYL 417
DV+D+ T Q + G G V++ +
Sbjct: 297 YDVVDSITAQTVE-YG-ERGNVIV--THLSPWAF 326
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 202 YTSGTTANPKGVLVSHRAA--YLMSLNVVLTWGMKEGAVYLWTLPI-FHGNGWCFTWSLA 258
+TSGTT PKGV +SH + + + + + L P F + + +L
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTL- 210
Query: 259 ALCG-TSVMLRQA---SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVN 314
G T L + K ++ IA+ V + + P + + + + +P + +
Sbjct: 211 -ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS-DDFCQAKMPALTH 268
Query: 315 VNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCA 354
G + ++ ++ + YG +E ATV
Sbjct: 269 FYFDGEELTVSTARKLFERFPSAKIINAYGPTE----ATVAL 306
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 57/248 (22%), Positives = 87/248 (35%), Gaps = 54/248 (21%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW------CF-- 253
YTSG+T PKGV VS + WG G V +L + + F
Sbjct: 182 YTSGSTGTPKGVRVSRHNL----SSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDV 237
Query: 254 -TWSL-AALC--GTSVMLRQASAK-AIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILP 308
+ A +V + S + + E GVT+ P +L+ P +
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPED----- 292
Query: 309 LPHVVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCA--WNPNWDSL--- 362
PH+V + GG P S + +VYG +E T+ DS
Sbjct: 293 APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTE----VTIGCSAGRILPDSDTRC 348
Query: 363 ---PFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKN 419
P ++ VL +N+ + G GE+V+ G++V GYL
Sbjct: 349 IGHPLG-----DSV----------AHVLAPGSNEHVKK-G-MAGELVIEGSLVANGYLNR 391
Query: 420 PKANEEAF 427
P A + F
Sbjct: 392 PDA--KGF 397
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 29/163 (17%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVVLTW-----GMKEGAVYLWTLPI-FHGNGWCFTW 255
YTSGTT NPKG ++ H+ + +L + + E I F + W
Sbjct: 189 YTSGTTGNPKGTMLEHKG--ISNL---KVFFENSLNVTEKDRIGQFASISFDASVWEMFM 243
Query: 256 SLAALCG-TSVMLRQA---SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPH 311
+L L G + ++ + + I + +T P + + +
Sbjct: 244 AL--LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------RILS 294
Query: 312 VVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCA 354
+ + T GS P L+ ++ + YG +E T+CA
Sbjct: 295 IQTLITAGSATSPS-LVNKWKEKVTYINAYGPTE----TTICA 332
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 28/167 (16%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVV--LTW-----GMKEGAVYLWTLPI-FHGNGWCF 253
YTSG+T NPKGV +S N+ W + G ++L P F +
Sbjct: 150 YTSGSTGNPKGVQISAA-------NLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDL 202
Query: 254 TWSLAALCG-TSVMLRQASAK---AIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPL 309
L G T + + + +++ + + G+ + + P + + P + L
Sbjct: 203 YPCL--QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD-PGFSQDLL 259
Query: 310 PHVVNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCA 354
PH G P + A+ ++ ++ + YG +E ATV
Sbjct: 260 PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE----ATVAV 302
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 28/167 (16%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVV--LTW-----GMKEGAVYLWTLPI-FHGNGWCF 253
YTSG+T NPKGV +++ +V W ++ G V+L P F +
Sbjct: 151 YTSGSTGNPKGVQITYN-------CLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDI 203
Query: 254 TWSLAALCG-TSVMLRQASAK---AIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPL 309
SL + G T + + ++ ++ + + + + P + L
Sbjct: 204 YPSL--VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE-SML 260
Query: 310 PHVVNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCA 354
P++ G P + + ++ + + YG +E ATV
Sbjct: 261 PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE----ATVAV 303
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 29/165 (17%)
Query: 202 YTSGTTANPKGVLVSHRAAYLMSLNVV-LTW-----GMKEGAVYLWTLPI-FHGNGWCFT 254
++SGTT PK + +H + L +L P+ F
Sbjct: 171 FSSGTTGRPKAIACTHA-------GITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIW 223
Query: 255 WSLAALCGTSVMLRQA---SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPH 311
+L L G +L + + I E G + + N++V+ P+ L
Sbjct: 224 GAL--LNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDC----LGG 277
Query: 312 VVNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVCA 354
+ + TGG P + + + + YG +E T
Sbjct: 278 LRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTE----NTTFT 318
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 68/434 (15%), Positives = 119/434 (27%), Gaps = 152/434 (35%)
Query: 24 WFLERAATVH--PTRKSVVYESKH---YTWQQT---YQRCR-----RLASALSQLSIGPG 70
+ + T P+ + +Y + Y Q Y R +L AL +L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 71 TAVSVLSPNVPAMYEVHFGVPMTGA---VLNCINFRLNPLNVAIILGHAEAALVFVDQQY 127
+ G + G+ + A V
Sbjct: 153 VL-------------ID-G--VLGSGKTWV--------------------ALDV------ 170
Query: 128 FALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFA 187
L+ + M+ +F + + + LE +KLL DP +
Sbjct: 171 -CLSYKVQCKMDF---KIF----WLNLKNCNSPETVLE--------MLQKLLYQIDPNWT 214
Query: 188 WKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL--TWGMKEGAVYLWTLPI 245
+ D +I L S + +L S Y L +VL
Sbjct: 215 SRS--DHSSNIKLRIHSIQAE-LRRLLKSKP--YENCL-LVLLNVQ-------NAKAWNA 261
Query: 246 FHGNGWCFTWSLAALCGT---SVMLRQASAKAIYKAIAEH--GVTNFCAAPIVLNSIVNA 300
F N C L T V ++A + ++ H +T ++L ++
Sbjct: 262 F--NLSCKI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDC 313
Query: 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWD 360
P+D LP V +P +S + S +G AT W+ NW
Sbjct: 314 RPQD----LPREV---LTTNP------RRLS--------IIAESIRDGLAT---WD-NWK 348
Query: 361 SLPFEAQARLNARQGVKCMCLEGLDVLDTKT----------NQPIPAD------GKTIGE 404
+ + + L L+ + + + IP I
Sbjct: 349 HVNCDKLTTIIE------SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 405 VVMRGNMVMKGYLK 418
VM +V+ K
Sbjct: 403 DVM---VVVNKLHK 413
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.97 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.96 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.96 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.96 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.52 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.18 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 93.07 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 84.77 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 84.76 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 83.97 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 82.64 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 82.35 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 81.71 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 81.47 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 80.19 |
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-61 Score=477.84 Aligned_cols=399 Identities=18% Similarity=0.230 Sum_probs=333.7
Q ss_pred CCCCCCCCcCCCCCCCCCCCCHHHHHHHHHhhCCCcceEE---E--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Q 048242 1 MEPQNDIDDLPKNPANFTALTPLWFLERAATVHPTRKSVV---Y--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSV 75 (430)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~---~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 75 (430)
||+...+..........+..|+.++|.+.++++|+++|++ + .++++||+||.++++++|+.|.++|+++||+|++
T Consensus 1 ~e~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 1 MEDAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp --CGGGSEECCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCcccceeeCCCCCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 5666666666677778888999999999999999999976 3 3589999999999999999999999999999999
Q ss_pred EcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEec
Q 048242 76 LSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIG 155 (430)
Q Consensus 76 ~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 155 (430)
+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++.+....+.......+ ....++.++
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 153 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-------IIQKIIIMD 153 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT-------TCCEEEETT
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCC-------CcceEEEEc
Confidence 9999999999999999999999999999999999999999999999999988887777665554 456666665
Q ss_pred CCCCCCCcccccccCCccchhhhhhcCCCC------CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh
Q 048242 156 DETCDRAPLEYALSKGVTEYEKLLETGDPE------FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL 229 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~ 229 (430)
.... ..+...+.+++...... ........++++++|+|||||||.||||+++|+++...+.+...
T Consensus 154 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~ 224 (550)
T 3rix_A 154 SKTD---------YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 224 (550)
T ss_dssp CSSC---------BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTC
T ss_pred CCcc---------ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhh
Confidence 4321 12334555554432221 11112234578999999999999999999999999888777665
Q ss_pred h---cCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCC
Q 048242 230 T---WGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTI 306 (430)
Q Consensus 230 ~---~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~ 306 (430)
. +++..++++++.+|++|.+++...+.+++.|+++++.+.+++..+++.|+++++|+++++|+++..+.+.......
T Consensus 225 ~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 304 (550)
T 3rix_A 225 PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKY 304 (550)
T ss_dssp TTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGS
T ss_pred hhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccccc
Confidence 5 4678899999999999999999888899999999999999999999999999999999999999999998766666
Q ss_pred CCCCceeEEeecCCCCCHHHHHHHH-hcCcE-EEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccce
Q 048242 307 LPLPHVVNVNTGGSPPPPPILLAMS-QKGFR-VTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGL 384 (430)
Q Consensus 307 ~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~-v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 384 (430)
+ +++||.+++||+++++++.++++ .++.. +++.||+||+++.++.+...+ ...+++|+|++++ ++
T Consensus 305 ~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG~~~~~~-~~ 371 (550)
T 3rix_A 305 D-LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD-----------DKPGAVGKVVPFF-EA 371 (550)
T ss_dssp C-CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTC-----------CCTTEEEEECTTC-EE
T ss_pred C-cccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCC-----------CCCCCcccccCCc-EE
Confidence 6 89999999999999999999998 56765 899999999987776654321 2447899999999 99
Q ss_pred EEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhh-hCC
Q 048242 385 DVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 385 ~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
+|+|++++++++.| +.|||+|+|++++.|||++|++|++.| .||
T Consensus 372 ~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g 416 (550)
T 3rix_A 372 KVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDG 416 (550)
T ss_dssp EEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTS
T ss_pred EEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCC
Confidence 99998879999998 899999999999999999999999998 454
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-61 Score=475.83 Aligned_cols=390 Identities=30% Similarity=0.448 Sum_probs=322.3
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEE----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVY----ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
..+.++.++|++.++.+|+++|+++ .++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 15 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 94 (541)
T 1v25_A 15 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG 94 (541)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 3457899999999999999999994 458999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
+|++++|++|.++.+++.++++.++++++|++.+....+.......+ ....++.+++... .+.
T Consensus 95 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~ 157 (541)
T 1v25_A 95 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAP----------EGY 157 (541)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-------SCCEEEESSSCCC----------TTC
T ss_pred cCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC-------CccEEEEecCCCC----------ccc
Confidence 99999999999999999999999999999999887665554432221 3445555543210 123
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHH--HhhcCCCCCCEEEeccCchhhhh
Q 048242 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNV--VLTWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~~~~~pl~h~~g 250 (430)
..+.+.+...... ....++++++|+|||||||.||||+++|+++....... ...++++.+|++++.+|++|.++
T Consensus 158 ~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 233 (541)
T 1v25_A 158 LAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 233 (541)
T ss_dssp EEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHH
T ss_pred ccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhH
Confidence 4455554433221 23467899999999999999999999999998776653 34567889999999999999999
Q ss_pred hHHHHHHHhhcceEEEeCC-CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 251 WCFTWSLAALCGTSVMLRQ-ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 251 l~~~~~~l~~g~~~v~~~~-~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
+...+.+++.|+++++.+. +++..+++.++++++|+++++|+++..+.+.......+ +++||.+++||+++++++.++
T Consensus 234 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~ 312 (541)
T 1v25_A 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIAR 312 (541)
T ss_dssp HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCc-chhccEEEECCCCCCHHHHHH
Confidence 9878888999999999864 79999999999999999999999999998764433344 899999999999999999999
Q ss_pred HHhcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 330 MSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 330 ~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
++.+|+++++.||+||+++.++.+.....+.....+......+++|+|++++ +++|+|++ +++++.++++.|||+|+|
T Consensus 313 ~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-g~~~~~~~~~~GEl~v~g 390 (541)
T 1v25_A 313 FERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKG 390 (541)
T ss_dssp HHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEES
T ss_pred HHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECCC-CCCCCCCCCcceEEEEeC
Confidence 9778999999999999987776654332222222222234568999999999 99999988 899986433689999999
Q ss_pred CcccccccCCcccchHhhh-CC
Q 048242 410 NMVMKGYLKNPKANEEAFA-NG 430 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f~-dg 430 (430)
++++.|||++|++|+++|. ||
T Consensus 391 ~~v~~GY~~~p~~t~~~f~~~g 412 (541)
T 1v25_A 391 PWITGGYYGNEEATRSALTPDG 412 (541)
T ss_dssp TTSBSSCBTCHHHHHTTBCTTS
T ss_pred cchhccccCChhhhhhhccCCC
Confidence 9999999999999999995 54
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-60 Score=469.94 Aligned_cols=378 Identities=20% Similarity=0.285 Sum_probs=325.3
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCcceEEECC--------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHH
Q 048242 14 PANFTALTPLWFLERAATVHPTRKSVVYES--------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE 85 (430)
Q Consensus 14 ~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~ 85 (430)
....+..++.++|+++++++|+++|+++.+ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++
T Consensus 13 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 92 (549)
T 3g7s_A 13 SLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92 (549)
T ss_dssp CCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 345678899999999999999999999977 899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccc
Q 048242 86 VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLE 165 (430)
Q Consensus 86 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (430)
++|||+++|++++|++|.++.+++.++++.++++++|++......+....... ....++.++..
T Consensus 93 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--------GVERVFVVGGE-------- 156 (549)
T ss_dssp HHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--------CCCEEEEETCS--------
T ss_pred HHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--------CCcEEEEeCCC--------
Confidence 99999999999999999999999999999999999999998877665543322 23445544421
Q ss_pred ccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCc
Q 048242 166 YALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPI 245 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl 245 (430)
...+.+................++++++|+|||||||.||||+++|+++.+.+.+....+++..+|++++.+|+
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 230 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPM 230 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCT
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcH
Confidence 23555655544433222222334899999999999999999999999999999988888999999999999999
Q ss_pred hhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCC--CCCCCceeEEeecCCCCC
Q 048242 246 FHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDT--ILPLPHVVNVNTGGSPPP 323 (430)
Q Consensus 246 ~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~--~~~l~~lr~v~~~G~~l~ 323 (430)
+|.+++...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+...... .+ +++||.+++||++++
T Consensus 231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gg~~l~ 309 (549)
T 3g7s_A 231 FHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD-WSYLKVFATGAWPVA 309 (549)
T ss_dssp TSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCC-CTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCC-ccceeEEEeCCccCC
Confidence 999999888888899999999999999999999999999999999999999987543322 34 899999999999999
Q ss_pred HHHHHHHHh-----cC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCC
Q 048242 324 PPILLAMSQ-----KG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPI 395 (430)
Q Consensus 324 ~~~~~~~~~-----~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~ 395 (430)
+++.+++++ ++ +++++.||+||++++++.+... .....+++|+|++++ +++|+|+++++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~ 378 (549)
T 3g7s_A 310 PALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL----------RLDKSTTQGVPMSDI-ELKVISLEDGREL 378 (549)
T ss_dssp HHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEE
T ss_pred HHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCcc----------ccCcCCCccccCCCC-EEEEEeCCCCcCC
Confidence 999999984 45 8999999999998877654321 123558899999999 9999996669999
Q ss_pred CCCCCceeEEEEecCcccccccCCcccchHhh
Q 048242 396 PADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 396 ~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f 427 (430)
+.| +.|||+|+|++++.|||++|++|+++|
T Consensus 379 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f 408 (549)
T 3g7s_A 379 GVG--ESGEIVIRGPNIFKGYWKREKENQECW 408 (549)
T ss_dssp CTT--CCEEEEEESTTSCSEETTCTTGGGTSE
T ss_pred CCC--CceEEEEECcchhhhhCCChhhhhhhh
Confidence 999 899999999999999999999999998
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-60 Score=467.09 Aligned_cols=381 Identities=20% Similarity=0.323 Sum_probs=324.3
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..++.++|.+.++++|+++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 478999999999999999999985 589999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++.+++.++++.++++++|++......+........ ..++.++... .+...+.
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~~~~~ 160 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD---------VKVMCVDSAP-----------DGCLHFS 160 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT---------CEEEESSCCC-----------TTCEETH
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC---------ceEEEecCCC-----------CCccCHH
Confidence 9999999999999999999999999999988777666544322 3444444321 2234555
Q ss_pred hhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh----hcCCCCCCEEEeccCchhhhhhH
Q 048242 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL----TWGMKEGAVYLWTLPIFHGNGWC 252 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~pl~h~~gl~ 252 (430)
++........ ......++++++|+|||||||.||||+++|+++.+.+..... .+.+..+|++++.+|++|.+++.
T Consensus 161 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 161 ELTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp HHHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred HHhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 5554332221 223457899999999999999999999999999888776543 34678899999999999999986
Q ss_pred -HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH
Q 048242 253 -FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS 331 (430)
Q Consensus 253 -~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~ 331 (430)
.++.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+.......+ +++||.+++||+++++++.++++
T Consensus 240 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gGe~l~~~~~~~~~ 318 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHD-LSSLRMIKSGGAPLGKELEDTVR 318 (536)
T ss_dssp HTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSC-CTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCC-CccceEEEECCCCCCHHHHHHHH
Confidence 4677888999999999999999999999999999999999999999987766666 99999999999999999999998
Q ss_pred -hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEec
Q 048242 332 -QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRG 409 (430)
Q Consensus 332 -~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g 409 (430)
.+ ++++++.||+||+++.++.+..... .......+++|+|++++ +++|+|++++++++.| +.|||+|+|
T Consensus 319 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g 389 (536)
T 3ni2_A 319 AKFPQARLGQGYGMTEAGPVLAMCLAFAK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRG 389 (536)
T ss_dssp HHCTTSEEEEEEECGGGSSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEES
T ss_pred HHCCCCCccccccccccchhhhcccccCC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeC
Confidence 56 8999999999999877665432110 01112457899999999 9999998879999998 899999999
Q ss_pred CcccccccCCcccchHhh-hCC
Q 048242 410 NMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 410 ~~v~~gY~~~~~~t~~~f-~dg 430 (430)
++++.|||++|++|++.| .||
T Consensus 390 ~~v~~GY~~~p~~t~~~~~~~g 411 (536)
T 3ni2_A 390 DQIMKGYLNDPEATSRTIDKEG 411 (536)
T ss_dssp TTSCSEETTCHHHHHHHBCTTS
T ss_pred cccchhhcCChhHHHhhccCCC
Confidence 999999999999999998 343
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-59 Score=464.08 Aligned_cols=380 Identities=16% Similarity=0.232 Sum_probs=319.0
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
+...++.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCC
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (430)
++|++|.++.+++.++++.++++++|++.... ........... ....++.+++...
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL-------SPEIILMLNHQAT------------ 167 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC-------CCSEEEEETCCTT------------
T ss_pred EecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc-------CcceEEEecCCcc------------
Confidence 99999999999999999999999999987653 22222222221 3344555443211
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 172 VTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
...+.+................++++++|+|||||||.||||+++|+++.+.+.+....+++..+|++++.+|++|.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 247 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFML 247 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeec
Confidence 12233333332222222234568999999999999999999999999999999999889999999999999999999988
Q ss_pred H--HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 252 C--FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 252 ~--~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..+++.......+ +++||.+++||+++++++.++
T Consensus 248 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~ 326 (544)
T 3o83_A 248 SSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ-IQSLKLLQVGGASFPESLARQ 326 (544)
T ss_dssp HSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH-HTTCCEEEEESSCCCHHHHTH
T ss_pred chHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc-CCcceEEEEcCCCCCHHHHHH
Confidence 7 3778888999999999999999999999999999999999999999876555555 899999999999999999999
Q ss_pred HH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCcc-ccccceEEeeCCCCCCCCCCCCceeEEEE
Q 048242 330 MS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC-MCLEGLDVLDTKTNQPIPADGKTIGEVVM 407 (430)
Q Consensus 330 ~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~-~~~~~~~v~d~~~~~~~~~~~~~~Gel~v 407 (430)
++ .+++++++.||+||++..+.... ........++|+|+ +++ +++|+|++ +++++.| ++|||+|
T Consensus 327 ~~~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~~~g--~~GEl~v 392 (544)
T 3o83_A 327 VPEVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDEQ-YREVPEG--EIGMLAT 392 (544)
T ss_dssp HHHHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEEE
T ss_pred HHHHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECCC-CCCCCCC--CeeEEEE
Confidence 98 56999999999999875443321 11223457899996 788 89999977 9999999 8999999
Q ss_pred ecCcccccccCCcccchHhh-hCC
Q 048242 408 RGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 408 ~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
+|++++.|||++|++|+++| .||
T Consensus 393 ~g~~v~~GY~~~~~~t~~~f~~~g 416 (544)
T 3o83_A 393 RGPYTFCGYYQSPEHNSQVFDEDN 416 (544)
T ss_dssp ECTTSCSCCTTCHHHHHHHBCTTC
T ss_pred ecCCcchhhcCChhhhhhhCCCCC
Confidence 99999999999999999999 454
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-59 Score=462.35 Aligned_cols=378 Identities=24% Similarity=0.295 Sum_probs=319.0
Q ss_pred CCCCCCCHHHHHHHHHhhCCCcceEEECCe--eeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 15 ANFTALTPLWFLERAATVHPTRKSVVYESK--HYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
......++.++|++.++.+|+++|+++.+. ++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 90 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAK 90 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHH
Confidence 345677999999999999999999999765 999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGV 172 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (430)
+|++++|++|.++.+++.++++.++++++|++.+....+........ ....++.+.. .
T Consensus 91 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---------------~ 148 (517)
T 3r44_A 91 LGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD-------PPGTVTDWIG---------------A 148 (517)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSS-------CCTTCCEEEE---------------H
T ss_pred hCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccC-------CccEEEEccC---------------c
Confidence 99999999999999999999999999999999887776655543222 1111111111 0
Q ss_pred cchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH
Q 048242 173 TEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC 252 (430)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~ 252 (430)
..+.+.+....... ......++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++.+|++|.+++.
T Consensus 149 ~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 149 DSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp HHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHH
T ss_pred ccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHH
Confidence 22333333322221 22345789999999999999999999999999999999888889999999999999999999998
Q ss_pred HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHh
Q 048242 253 FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ 332 (430)
Q Consensus 253 ~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~ 332 (430)
..+.+++.|+++++.+.+++..+++.+.++++|+++++|++++.+.+.......+ +++||.+++||+++++++.+++++
T Consensus 228 ~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~~~~~~~~~ 306 (517)
T 3r44_A 228 TVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELD-APDFRYFITGGAPMPEALIKIYAA 306 (517)
T ss_dssp HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCC-CTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCC-CCcccEEEECCCCCCHHHHHHHHh
Confidence 7666666999999999999999999999999999999999999998876544455 899999999999999999999997
Q ss_pred cCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcc
Q 048242 333 KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMV 412 (430)
Q Consensus 333 ~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v 412 (430)
.++++++.||+||+++.++..... ......+++|+|.+++ +++|+|++ +++++.| .|||+|+|+++
T Consensus 307 ~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g---~GEl~v~g~~v 372 (517)
T 3r44_A 307 KNIEVVQGYALTESCGGGTLLLSE---------DALRKAGSAGRATMFT-DVAVRGDD-GVIREHG---EGEVVIKSDIL 372 (517)
T ss_dssp TTCEEEEEEECGGGTTCEEEECGG---------GTTTTTTCCBEECTTE-EEEEECTT-SCEESSE---EEEEEEEETTS
T ss_pred cCCcEEEeecccccccceeecCCc---------cccccCCCCCcCCCCe-EEEEECCC-CCCCCCC---CeEEEEeCcch
Confidence 799999999999998776654322 1123458899999999 99999987 8888875 69999999999
Q ss_pred cccccCCcccchHhhhCC
Q 048242 413 MKGYLKNPKANEEAFANG 430 (430)
Q Consensus 413 ~~gY~~~~~~t~~~f~dg 430 (430)
+.|||++|++|+++|.+|
T Consensus 373 ~~GY~~~p~~t~~~f~~g 390 (517)
T 3r44_A 373 LKEYWNRPEATRDAFDNG 390 (517)
T ss_dssp CSEETTCHHHHHHTEETT
T ss_pred hhhhCCChhhhHhhhcCC
Confidence 999999999999999765
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-59 Score=461.10 Aligned_cols=377 Identities=20% Similarity=0.226 Sum_probs=314.3
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
+...++.++|+++++++|+++|+++.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCC
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (430)
++|++|.++.+++.++++.++++++|++.+.. ..+.......+ ....++..++..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAE------------- 161 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCT-------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC-------CccEEEEcCCcc-------------
Confidence 99999999999999999999999999987532 22233322222 334444443211
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 172 VTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
.+.++...... ........++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++.+|++|.+++
T Consensus 162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 11122211111 111134567899999999999999999999999999998888888899999999999999999998
Q ss_pred H--HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 252 C--FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 252 ~--~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
. .++.+++.|+++++.+.+++..+++.|+++++|+++++|+++..+.+.......+ +++||.+++||+++++++.++
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~ 317 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARR 317 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTT
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCC-ccceeEEEEcCCCCCHHHHHH
Confidence 7 4788899999999999999999999999999999999999999998765444445 899999999999999999999
Q ss_pred HH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEe
Q 048242 330 MS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMR 408 (430)
Q Consensus 330 ~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~ 408 (430)
++ .+++++++.||+||++..+... . .......+++|+|+++..+++|+|++ +++++.| +.|||+|+
T Consensus 318 ~~~~~~~~~~~~YG~TE~~~~~~~~--~--------~~~~~~~~~~G~p~~~~~~~~i~d~~-~~~~~~g--~~GEl~v~ 384 (539)
T 1mdb_A 318 VKAVFGCTLQQVFGMAEGLVNYTRL--D--------DPEEIIVNTQGKPMSPYDESRVWDDH-DRDVKPG--ETGHLLTR 384 (539)
T ss_dssp HHHHTCSEEEEEEECTTSCEEECCT--T--------SCHHHHHHCCCEESSTTCEEEEECTT-SCBCCTT--CCEEEEEE
T ss_pred HHHHhCCcEEEEEcCCCCcccccCC--C--------CcHHhcCCCCCcccCCCceEEEECCC-CCCCcCC--CcceEEee
Confidence 98 5799999999999965332211 1 11123457899999764369999987 9999998 89999999
Q ss_pred cCcccccccCCcccchHhh-hCC
Q 048242 409 GNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 409 g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
|++++.|||++|++|+++| .||
T Consensus 385 g~~v~~GY~~~~~~t~~~f~~~g 407 (539)
T 1mdb_A 385 GPYTIRGYYKAEEHNAASFTEDG 407 (539)
T ss_dssp CTTSCSSCTTCHHHHHHHBCTTS
T ss_pred CcccchhhcCChhhhhhhccCCC
Confidence 9999999999999999999 454
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-59 Score=458.07 Aligned_cols=372 Identities=24% Similarity=0.374 Sum_probs=316.1
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.+...|+.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++|.++.+++.++++.++++++|++.+....+........ ....++.+++.. ..+
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------~~~ 140 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG-------GVKKAYAIGDGS--------------GPF 140 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS-------SCCEEEESSCCC--------------SSC
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC-------CceEEEEcCCCC--------------cCh
Confidence 99999999999999999999999999999887665444332222 445555554421 122
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
.++...............++++++|+|||||||.||+|+++|+++.+.+.+....++++.+|++++.+|++|.+++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222111122222456789999999999999999999999999999999998999999999999999999999999888
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK- 333 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~- 333 (430)
.+++.|++.++...+++..+++.++++++|+++++|+++..+++... ..+ +++||.++.+|++ ++.++++ .+
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~-l~~lr~~~~~g~~---~~~~~~~~~~~ 294 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--PAQ-LASLRAVTGLDTP---ETIERFEATCP 294 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--GGG-GTTCCEEEEECCH---HHHHHHHHHCT
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--ccc-hhhhheecccCCh---HHHHHHHHhcC
Confidence 87778888888878999999999999999999999999999998762 233 8899999999987 7777777 55
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||++++++.+...+ ...++|+|++++ +++|+|++ +++++.| ++|||+|+|++++
T Consensus 295 ~~~~~~~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~ 358 (509)
T 3ivr_A 295 NATFWATFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDAE-DRPLPPG--EVGEIVLRGPTVF 358 (509)
T ss_dssp TCEEEEEEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEcccCccccccccccCcccc------------CCCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEecCCcc
Confidence 999999999999988777654321 224599999999 99999998 9999999 8999999999999
Q ss_pred ccccCCcccchHhhhCC
Q 048242 414 KGYLKNPKANEEAFANG 430 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~dg 430 (430)
.|||++|++|+++|.||
T Consensus 359 ~gY~~~~~~t~~~f~~g 375 (509)
T 3ivr_A 359 KGYWNNAAATQHAFRNG 375 (509)
T ss_dssp CEETTCHHHHHHHTGGG
T ss_pred ccccCCHHHhHHHhhcC
Confidence 99999999999999764
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-58 Score=454.60 Aligned_cols=378 Identities=17% Similarity=0.210 Sum_probs=316.1
Q ss_pred CCHHH-HHHHHHhhCCCcceEEE--CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 20 LTPLW-FLERAATVHPTRKSVVY--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 20 ~t~~~-~l~~~~~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
.++.+ ++.+.++++ +++|+++ .++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47888 888888889 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++.+++.++++.++++++|++.+....+.......+ ....++.+++... ..+...+.
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~ 167 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT-------TIKTIVILDSKVD---------YRGYQCLD 167 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST-------TCCEEEETTCSSC---------BTTBCBHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC-------CCCEEEEeCCccc---------ccccccHH
Confidence 9999999999999999999999999999987766655443322 2345555543210 01233466
Q ss_pred hhhhcCCCCCCCCCCC------CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh---cCCCCCCEEEeccCchh
Q 048242 177 KLLETGDPEFAWKPPR------DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT---WGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~------~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~pl~h 247 (430)
+++............. .++++++|+|||||||.||+|+++|+++.+.+.+.... ++++.+|++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 6554432110000111 23899999999999999999999999999888877766 67889999999999999
Q ss_pred hhhhHH-HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHH
Q 048242 248 GNGWCF-TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPI 326 (430)
Q Consensus 248 ~~gl~~-~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 326 (430)
.+++.. ++.++ .|+++++.+.+++..+++.|+++++|+++++|++++.+.+.......+ +++||.+++||+++++++
T Consensus 248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~ 325 (548)
T 2d1s_A 248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYD-LSNLVEIASGGAPLSKEV 325 (548)
T ss_dssp HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSC-CTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccc-ccceeEEEEcCccCCHHH
Confidence 999886 45555 999999999899999999999999999999999999999876555555 899999999999999999
Q ss_pred HHHHH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeE
Q 048242 327 LLAMS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGE 404 (430)
Q Consensus 327 ~~~~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Ge 404 (430)
.++++ .+ ++++++.||+||+++.++.+... ....+++|+|++++ +++|+|++++++++.| +.||
T Consensus 326 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GE 391 (548)
T 2d1s_A 326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGE 391 (548)
T ss_dssp HHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEE
T ss_pred HHHHHHHcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeE
Confidence 99998 56 78899999999998766653211 12347899999999 9999997669999998 8999
Q ss_pred EEEecCcccccccCCcccchHhh-hCC
Q 048242 405 VVMRGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 405 l~v~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
|+|+|++++.|||++|++|++.| .||
T Consensus 392 l~v~g~~v~~GY~~~~~~t~~~f~~~g 418 (548)
T 2d1s_A 392 VCVKGPMLMKGYVNNPEATKELIDEEG 418 (548)
T ss_dssp EEEESTTSCSEETTCHHHHHHHBCTTS
T ss_pred EEECCHHHhhhhcCChHHhhhcccCCc
Confidence 99999999999999999999999 444
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-57 Score=453.22 Aligned_cols=377 Identities=15% Similarity=0.185 Sum_probs=317.7
Q ss_pred CCH-HHHHHHHHhhCCCcceEEEC-----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhc
Q 048242 20 LTP-LWFLERAATVHPTRKSVVYE-----SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMT 93 (430)
Q Consensus 20 ~t~-~~~l~~~~~~~p~~~a~~~~-----~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 93 (430)
.++ .++|++.++.+|+++|+++. ++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 344 49999999999999999972 378999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChhhHHHHHhhcCceEEEeccccH--HHHHHHHHHhhccCCCCCCC-CeEEEecCCCCCCCcccccccC
Q 048242 94 GAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYF--ALAEEALKIMEGKSEGLFKP-PVLIVIGDETCDRAPLEYALSK 170 (430)
Q Consensus 94 G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 170 (430)
|++++|++|.++.+++.++++.++++++|++.+.. ..+.......+ .. ..++.++... ..
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~ 197 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG-------DIPLKKAKVGGDV----------LE 197 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC-------SCCCEEEEESSSC----------CT
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC-------CcceEEEEeCCcc----------cc
Confidence 99999999999999999999999999999988754 55555554443 33 4455554321 23
Q ss_pred CccchhhhhhcCCCCCCCC---CCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchh
Q 048242 171 GVTEYEKLLETGDPEFAWK---PPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h 247 (430)
++..+.+.+.........+ ....++|+++|+|||||||.||+|.++|.++...+.......++..++++++..|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGW 277 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTS
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHH
Confidence 4566766665544432221 2457899999999999999999999999999888777777778899999999999999
Q ss_pred hhhhHH-HHHHHhhcceEEEe--CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCH
Q 048242 248 GNGWCF-TWSLAALCGTSVML--RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324 (430)
Q Consensus 248 ~~gl~~-~~~~l~~g~~~v~~--~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~ 324 (430)
..+++. ++.++..|+++++. ..+++..+++.|+++++|+++++|++++.+.+... ...+ +++||.+++||+++++
T Consensus 278 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~-l~~lr~i~~gGe~l~~ 355 (580)
T 3etc_A 278 GKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYN-FSTLKYAVVAGEPLNP 355 (580)
T ss_dssp THHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC----C-CTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc-ccCC-CccceEEEEccCCCCH
Confidence 888774 67778888888887 57899999999999999999999999999998633 3344 8999999999999999
Q ss_pred HHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCcee
Q 048242 325 PILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIG 403 (430)
Q Consensus 325 ~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~G 403 (430)
++.++|+ .+|+++++.||+||+++.++..... ..+.+++|+|++++ +++|+|++ +++++.| +.|
T Consensus 356 ~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~~-g~~~~~g--~~G 420 (580)
T 3etc_A 356 EVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDRD-GRLCEVG--EEG 420 (580)
T ss_dssp HHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECTT-SCBCCTT--CCE
T ss_pred HHHHHHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECCC-CCCCCCC--Cce
Confidence 9999998 5699999999999997665543321 12458899999999 99999998 9999999 899
Q ss_pred EEEEec-----CcccccccCCcccchHhhhCC
Q 048242 404 EVVMRG-----NMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 404 el~v~g-----~~v~~gY~~~~~~t~~~f~dg 430 (430)
||+|+| ++++.|||++|++|++.|.||
T Consensus 421 El~v~~~~g~~~~~~~gY~~~p~~t~~~f~~g 452 (580)
T 3etc_A 421 EIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452 (580)
T ss_dssp EEEEECTTCCCTTCCCEETTCHHHHHHHEETT
T ss_pred EEEEecCCCCCCeeeccccCCHhHHHhhcCCC
Confidence 999997 789999999999999999765
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-58 Score=450.07 Aligned_cols=365 Identities=19% Similarity=0.235 Sum_probs=307.7
Q ss_pred HHHHHHHhhCCCcceEE---ECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeec
Q 048242 24 WFLERAATVHPTRKSVV---YESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCI 100 (430)
Q Consensus 24 ~~l~~~~~~~p~~~a~~---~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l 100 (430)
++|++.++++|+++++. +.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 47889999999999888 356899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhhh
Q 048242 101 NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180 (430)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (430)
+|.++.+++.++++.++++++|++.+....+........ ..++.++... ...+.+...
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-------------~~~~~~~~~ 141 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG---------ATVETLGPDG-------------RGSLTDAAA 141 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT---------CEEEECCTTS-------------CSHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC---------ceEEEecCCc-------------ccccchhhh
Confidence 999999999999999999999999876655544443332 2333333221 011222221
Q ss_pred cCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH-HHHHHHh
Q 048242 181 TGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-FTWSLAA 259 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~-~~~~~l~ 259 (430)
..... .......++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++.+|++|.+|+. ..+.+++
T Consensus 142 ~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 142 GASEA-FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp TSCSC-CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred cCCCC-cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 11111 122345689999999999999999999999999999999998899999999999999999999976 4677888
Q ss_pred hcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcCcEEE
Q 048242 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKGFRVT 338 (430)
Q Consensus 260 ~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~ 338 (430)
.|+++++.+.+++..+++.++ ++|+++++|+++..++......... +++||.+++||+++++++.++|+ .++++++
T Consensus 221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 297 (503)
T 4fuq_A 221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLADTHREWSAKTGHAVL 297 (503)
T ss_dssp TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTT-TTTCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccc-hhhcEEEEECCCCCCHHHHHHHHHHhCCCcc
Confidence 999999999999999999998 8999999999999999987766666 89999999999999999999998 5699999
Q ss_pred eeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccC
Q 048242 339 HVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLK 418 (430)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~ 418 (430)
+.||+||++..++..... ....+++|+|++++ +++|+|++++++++.| ++|||+|+|++++.|||+
T Consensus 298 ~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~ 363 (503)
T 4fuq_A 298 ERYGMTETNMNTSNPYDG-----------DRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWR 363 (503)
T ss_dssp ECCEETTTEECBCCCSSS-----------CCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTT
T ss_pred ceEcccccCcccccCCCC-----------CCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcC
Confidence 999999998665432111 12347899999999 9999997779999999 899999999999999999
Q ss_pred CcccchHhhh
Q 048242 419 NPKANEEAFA 428 (430)
Q Consensus 419 ~~~~t~~~f~ 428 (430)
+|++|+++|.
T Consensus 364 ~~~~t~~~f~ 373 (503)
T 4fuq_A 364 MPEKTKSEFR 373 (503)
T ss_dssp CHHHHHHTBC
T ss_pred ChhhhHhhhC
Confidence 9999999995
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-59 Score=454.64 Aligned_cols=387 Identities=17% Similarity=0.189 Sum_probs=299.2
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHhhCCCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcC
Q 048242 8 DDLPKNPANFTALTPLWFLERAATVHPTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSP 78 (430)
Q Consensus 8 ~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ 78 (430)
+..++....++..++.++|++.++++|+++|+++.+ +++||+||.++++++|+.|.++|+ +||+|+|+++
T Consensus 12 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~ 90 (480)
T 3t5a_A 12 SGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAP 90 (480)
T ss_dssp ------------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECC
T ss_pred CCCCcccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcC
Confidence 455667778889999999999999999999999865 899999999999999999999996 9999999999
Q ss_pred CchhHHHHHHHhhhcCCeeeeccc---cCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEec
Q 048242 79 NVPAMYEVHFGVPMTGAVLNCINF---RLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIG 155 (430)
Q Consensus 79 n~~~~~~~~lA~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 155 (430)
|++++++++|||+++|++++|+++ .++.+++.++++.++++++|++.+....+.......... ....++.++
T Consensus 91 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 165 (480)
T 3t5a_A 91 QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE-----SPPSIIEVD 165 (480)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-----------CCEEEEGG
T ss_pred CcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc-----cccceeEec
Confidence 999999999999999999999999 788999999999999999999988766554432111100 112233322
Q ss_pred CCCCCCCcccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCC
Q 048242 156 DETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKE 235 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~ 235 (430)
... .............++++++|+|||||||.||||+++|+++.+.+.+....+.+..
T Consensus 166 ~~~----------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 223 (480)
T 3t5a_A 166 LLD----------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADT 223 (480)
T ss_dssp GSC----------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTT
T ss_pred ccc----------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcccc
Confidence 211 0011111123456789999999999999999999999999999888888888777
Q ss_pred ------CCEEEeccCchhhhhhH-HHHHHHhhcceEEEeCCC----CHHHHHHHHHhhCceEEeeccHHHHHHHcC----
Q 048242 236 ------GAVYLWTLPIFHGNGWC-FTWSLAALCGTSVMLRQA----SAKAIYKAIAEHGVTNFCAAPIVLNSIVNA---- 300 (430)
Q Consensus 236 ------~~~~~~~~pl~h~~gl~-~~~~~l~~g~~~v~~~~~----~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~---- 300 (430)
+|++++.+|++|.+|+. .++.+++.|+++++.+.+ ++..+++.++++++| +..+|+++..++..
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~ 302 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD 302 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc
Confidence 99999999999999977 578888999999998753 899999999999999 88899988888753
Q ss_pred CCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hcC------cEEEeeecCccccccccccccCCCCCCC--Chhh-----
Q 048242 301 PPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QKG------FRVTHVYGLSEINGPATVCAWNPNWDSL--PFEA----- 366 (430)
Q Consensus 301 ~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~~------~~v~~~YG~tE~~~~~~~~~~~~~~~~~--~~~~----- 366 (430)
......+ +++||.+++||+++++++.++++ .++ +.+++.||+||+++.++........... ....
T Consensus 303 ~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 381 (480)
T 3t5a_A 303 DDMAGRD-LGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGH 381 (480)
T ss_dssp GGGTTCC-CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTB
T ss_pred ccccccc-hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCc
Confidence 2223344 89999999999999999999998 543 4699999999998877765443211100 0000
Q ss_pred -------hhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhh
Q 048242 367 -------QARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 367 -------~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
......++|+|++ + +++|+|++++++++.| ++|||+|+|++++.|||++|++|+++|.
T Consensus 382 ~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~ 446 (480)
T 3t5a_A 382 AKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFG 446 (480)
T ss_dssp CCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHC
T ss_pred eeecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHh
Confidence 0234568999999 8 9999999888999999 9999999999999999999999999994
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-57 Score=448.48 Aligned_cols=364 Identities=18% Similarity=0.206 Sum_probs=307.6
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
+++.++|++.++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhhh
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLL 179 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
++|.++.+++.++++.+++++++++..... . .....+... ..+.+..
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~---------~-------~~~~~~~~~-----------------~~~~~~~ 127 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTV---------T-------DLPVRIVSE-----------------DNLKDIF 127 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCS---------S-------CCSSEEEET-----------------HHHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCcccc---------c-------ccccceech-----------------hhhhhhc
Confidence 999999999999999999999999754210 0 111111000 0111111
Q ss_pred hc-CCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 180 ET-GDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 180 ~~-~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
.. ............++++++|+|||||||.||+|+++|+++.+.+.+....+++..+|++++.+|++|.+++...+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 207 (512)
T 3fce_A 128 FTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL 207 (512)
T ss_dssp HHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHH
T ss_pred ccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHH
Confidence 11 11111122345678999999999999999999999999999999888899999999999999999999998899999
Q ss_pred hhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-
Q 048242 259 ALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK- 333 (430)
Q Consensus 259 ~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~- 333 (430)
+.|+++++.+. +++..+++.++++++|+++++|+++..++........+ +++||.+++||+++++++.++++ .+
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 208 VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFCGEVLPNEVARKLIERFP 286 (512)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTT-STTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchh-CccccEEEEecCcCCHHHHHHHHHHCC
Confidence 99999999976 68999999999999999999999999999887666666 89999999999999999999998 56
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||+++.++.....+ .........++|+|.+++ +++|+|++ +++++.| +.|||+|+|++++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 356 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVTE------EVLDQYKSLPVGYCKSDC-RLLIMKED-GTIAPDG--EKGEIVIVGPSVS 356 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECCH------HHHHHCSSCCCEEECTTC-EEEEECSS-SCBCCTT--SCEEEEEESTTSC
T ss_pred CCEEEeCcccChhhhheeeEEecc------ccccccCCCccccccCCc-EEEEECCC-CCCCCCC--CeEEEEEeccccC
Confidence 899999999999988776544321 111223457899999999 99999987 9999998 8999999999999
Q ss_pred ccccCCcccchHhh
Q 048242 414 KGYLKNPKANEEAF 427 (430)
Q Consensus 414 ~gY~~~~~~t~~~f 427 (430)
.|||++|++|++.|
T Consensus 357 ~GY~~~~~~t~~~f 370 (512)
T 3fce_A 357 VGYLGSPELTEKAF 370 (512)
T ss_dssp SCBTTCHHHHHHHE
T ss_pred hhhcCCchhhhhcc
Confidence 99999999999998
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-57 Score=448.21 Aligned_cols=379 Identities=18% Similarity=0.242 Sum_probs=307.1
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|++.++ +|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 3458899999999 999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCC-CeEEEecCCCCCCCcccccccCCccchhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKP-PVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
|++|.++.+++.++++.++++++|++.+....+........ .. ..++.++..... ......+.+
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------~~~~~~~~~ 166 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE-------HDGCQLIVSQPRESE--------PRLAPLFEE 166 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----------CCEEEEECC--------------CCCBHHH
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhcc-------ccCceEEEecccccc--------cccccchhh
Confidence 99999999999999999999999999887665544432111 22 344444432100 011224555
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHH-HHHHHHHHhhcCCCCCCEEEeccCchhhhhhHH-HH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAA-YLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCF-TW 255 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~-~~ 255 (430)
++....... ......++++++|+|||||||.||+|+++|+++ .+........+++..+|++++.+|++|.+++.. ++
T Consensus 167 ~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 245 (529)
T 2v7b_A 167 LIDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLT 245 (529)
T ss_dssp HHHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTH
T ss_pred hhccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHH
Confidence 554322221 123456799999999999999999999999999 666555555678889999999999999999875 56
Q ss_pred HHHhhcceEEEe-CCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc
Q 048242 256 SLAALCGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK 333 (430)
Q Consensus 256 ~~l~~g~~~v~~-~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~ 333 (430)
.++..|+++++. +.+++..+++.+.++++|+++++|+++..++......... ..+||.+++||+++++++.++++ .+
T Consensus 246 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~~ 324 (529)
T 2v7b_A 246 FPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAHF 324 (529)
T ss_dssp HHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 788899999988 6789999999999999999999999999999876544331 23899999999999999999998 56
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||+++.++.+.... ...+++|+|++++ +++|+|++ +++++.| ++|||+|+|++++
T Consensus 325 g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~~ 389 (529)
T 2v7b_A 325 GCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDEA-GHAVPDG--EVGDLYIKGPSAA 389 (529)
T ss_dssp SCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECTT-SCBCCTT--SCEEEEEECTTCC
T ss_pred CCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECCC-CCCCCCC--CccEEEEecCCcc
Confidence 999999999999976655432211 2347899999999 99999987 9999998 8999999999999
Q ss_pred ccccCCcccchHhhhCC
Q 048242 414 KGYLKNPKANEEAFANG 430 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~dg 430 (430)
.|||++++.|++.|.||
T Consensus 390 ~gY~~~~~~t~~~f~~~ 406 (529)
T 2v7b_A 390 VMYWNNREKSRATFLGE 406 (529)
T ss_dssp CCBTTCHHHHHHHEETT
T ss_pred cccCCChHHHHHhhhcC
Confidence 99999999999998654
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-57 Score=448.98 Aligned_cols=363 Identities=20% Similarity=0.255 Sum_probs=312.1
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQL-SIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
+++.++|+++++++|+++|+++.++++||+||.++++++|+.|.++ |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 4789999999999999999999999999999999999999999975 888999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.++++++|++...... ... .......+.++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~----------------~~~------------------~~~~~~~~~~~ 126 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID----------------AVG------------------QQIQTVSAEEL 126 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT----------------CCC------------------CSSCEEEHHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch----------------hcc------------------cccceecHhhh
Confidence 99999999999999999999999996542100 000 00111233444
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
...............++++++|+|||||||.||+|+++|+++.+.+.+....+++..+|++++.+|++|.+++...+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 206 (511)
T 3e7w_A 127 LENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCL 206 (511)
T ss_dssp HTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred hccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHH
Confidence 43332222222345678999999999999999999999999999999988899999999999999999999998889999
Q ss_pred hhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-
Q 048242 259 ALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK- 333 (430)
Q Consensus 259 ~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~- 333 (430)
..|+++++.+. +++..+++.++++++|+++++|+++..++......... ++++|.++++|+++++++.++++ .+
T Consensus 207 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~ 285 (511)
T 3e7w_A 207 QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL-LPHADTFMFCGEVLPVSVAKALLERFP 285 (511)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccccc-CCcccEEEEecCCCCHHHHHHHHHHCC
Confidence 99999999875 68999999999999999999999999999887666666 89999999999999999999998 56
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||+++.++.+.... .........++|+|++++ +++|+|++ +++++.| +.|||+|+|++++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 355 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITN------DVISRSESLPVGFAKPDM-NIFIMDEE-GQPLPEG--EKGEIVIAGPSVS 355 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECH------HHHTTCSSCCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CcEEEeCcccchheeeeeEEeccc------cccccCCcCCCcceeCCC-EEEEECCC-CCCCCCC--CceEEEEecCccC
Confidence 899999999999988776554321 111112346799999999 99999988 9999998 8999999999999
Q ss_pred ccccCCcccchHhh
Q 048242 414 KGYLKNPKANEEAF 427 (430)
Q Consensus 414 ~gY~~~~~~t~~~f 427 (430)
.|||++|++|++.|
T Consensus 356 ~GY~~~~~~t~~~f 369 (511)
T 3e7w_A 356 RGYLGEPELTEKAF 369 (511)
T ss_dssp CCBTTCHHHHHHHE
T ss_pred hhhCCCcccchhhh
Confidence 99999999999998
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=449.04 Aligned_cols=358 Identities=16% Similarity=0.203 Sum_probs=299.9
Q ss_pred CCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeee
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLN 98 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~ 98 (430)
..++.++|++.++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhhh
Q 048242 99 CINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKL 178 (430)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
|++|.++.+++.++++.++++++|++.+....+.. .. ....+..++....
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~-------~~~~~~~~~~~~~------------------- 167 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQ-------FNGQVEIFEEDTI------------------- 167 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SC-------CCSEEEECCCSTT-------------------
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----cc-------ccCceeeecchhh-------------------
Confidence 99999999999999999999999999876443221 00 1122322221100
Q ss_pred hhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHH
Q 048242 179 LETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l 258 (430)
... .......+..++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++..|++|..++...+.++
T Consensus 168 -~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 245 (563)
T 1amu_A 168 -KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL 245 (563)
T ss_dssp -TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred -ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHH
Confidence 000 011111234678999999999999999999999999998888888888999999999999999999988888899
Q ss_pred hhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCc
Q 048242 259 ALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGF 335 (430)
Q Consensus 259 ~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~ 335 (430)
+.|+++++.+. +++..+++.++++++|+++++|+++..+... . +++||.+++||+++++++.+++++. +
T Consensus 246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~-~~~lr~~~~gG~~l~~~~~~~~~~~-~ 317 (563)
T 1amu_A 246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------R-ILSIQTLITAGSATSPSLVNKWKEK-V 317 (563)
T ss_dssp TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------T-CCSCSEEEEESSCCCHHHHHHHTTT-S
T ss_pred HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------c-cccccEEEEEEecCCHHHHHHHHhC-C
Confidence 99999999875 6899999999999999999999998877532 2 7899999999999999999999863 8
Q ss_pred EEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccccc
Q 048242 336 RVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKG 415 (430)
Q Consensus 336 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~g 415 (430)
++++.||+||+++.++.+...+.. .....++|+|++++ +++|+|++ +++++.| +.|||+|+|++++.|
T Consensus 318 ~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~~-~~~~~~g--~~GEl~v~g~~v~~G 385 (563)
T 1amu_A 318 TYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLARG 385 (563)
T ss_dssp EEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCE
T ss_pred eEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECCC-cCCCCCC--CcEEEEEechhhChh
Confidence 999999999998776655432210 11346899999999 99999987 9999998 899999999999999
Q ss_pred ccCCcccchHhhh
Q 048242 416 YLKNPKANEEAFA 428 (430)
Q Consensus 416 Y~~~~~~t~~~f~ 428 (430)
||++|++|+++|.
T Consensus 386 Y~~~pe~t~~~f~ 398 (563)
T 1amu_A 386 YWKRPELTSQKFV 398 (563)
T ss_dssp ETTCHHHHHHHEE
T ss_pred hCCCchhhhhhcc
Confidence 9999999999994
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-57 Score=454.88 Aligned_cols=359 Identities=16% Similarity=0.188 Sum_probs=302.2
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.....++.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 23 ~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa 102 (620)
T 4dg8_A 23 LYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH 102 (620)
T ss_dssp GGGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++|.++.+++.++++.+++++++++....... .....+.+...
T Consensus 103 ~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~---------------~~~~~~~~~~~------------------ 149 (620)
T 4dg8_A 103 HYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA---------------NGLPCVPVRHL------------------ 149 (620)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC---------------TTSCEEEGGGC------------------
T ss_pred EEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc---------------cCCceeeeccC------------------
Confidence 999999999999999999999999999765321100 00011111000
Q ss_pred hhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHH
Q 048242 176 EKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
. ............++++++|+|||||||.||||+++|+++.+.+.+ ...+++..+++++...|++|..++..++
T Consensus 150 ----~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 150 ----P-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp ----C-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred ----C-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 0 001111112346899999999999999999999999999776655 4567888999999999999999999999
Q ss_pred HHHhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-h
Q 048242 256 SLAALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-Q 332 (430)
Q Consensus 256 ~~l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~ 332 (430)
.+++.|+++++.+ .+++..+++.|+++++|+++++|++++.+.+... .. +++||.+++||+++++++.+++. .
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~-l~~lr~v~~gGe~l~~~~~~~~~~~ 299 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP---DC-LGGLRQLLTGGDILSVPHVRRALLR 299 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG---GG-GTTCSEEEEESSCCCHHHHHHHHHH
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh---hh-CCCccEEEEEeCcCCHHHHHHHHHh
Confidence 9999999999974 5899999999999999999999999999987533 23 88999999999999998888886 4
Q ss_pred c-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCC-CCCCCCceeEEEEecC
Q 048242 333 K-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQP-IPADGKTIGEVVMRGN 410 (430)
Q Consensus 333 ~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~-~~~~~~~~Gel~v~g~ 410 (430)
+ ++++++.||+||+++.++.+.... ........++|+|++++ +++|+|++ +++ ++.| ++|||+|+|+
T Consensus 300 ~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~~~~g--~~GEl~i~G~ 368 (620)
T 4dg8_A 300 HPRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDEH-GQEIAEPD--RAGEIVAFGA 368 (620)
T ss_dssp CTTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECTT-SCBCCSSS--CCEEEEEEET
T ss_pred CCCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECcc-CCCCCCCC--CceEEEEecc
Confidence 4 899999999999987776554321 22223457899999999 99999998 665 7777 8999999999
Q ss_pred cccccccCCcccchHhhh
Q 048242 411 MVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 411 ~v~~gY~~~~~~t~~~f~ 428 (430)
++++|||++|++|+++|.
T Consensus 369 ~v~~GY~~~p~~t~~~f~ 386 (620)
T 4dg8_A 369 GLAQGYRNDAARTRASFV 386 (620)
T ss_dssp TCCSEETTCHHHHHHHEE
T ss_pred ccccccCCChhhhhhhhc
Confidence 999999999999999994
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=440.96 Aligned_cols=360 Identities=22% Similarity=0.285 Sum_probs=299.2
Q ss_pred CCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
.++.++|+++++++|+++|+++. ++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEe--ccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccch
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFV--DQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEY 175 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+|++|.++.+++.++++.++++++++ +.+....+. .... . ..++.++
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~-------~-~~~~~~~-------------------- 130 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGS-------G-ARIIFLG-------------------- 130 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCC-------C-CEEEEGG--------------------
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccc-------c-ceeEEec--------------------
Confidence 99999999999999999999999999 665433221 1111 1 1122221
Q ss_pred hhhhhcC----CCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCC--CCCCEEEeccCchhhh
Q 048242 176 EKLLETG----DPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGM--KEGAVYLWTLPIFHGN 249 (430)
Q Consensus 176 ~~~~~~~----~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~~~~~pl~h~~ 249 (430)
++.... ...........++++++|+|||||||.||||+++|+++.+.+.+....+++ ..++++++.+|++|.+
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (504)
T 1t5h_X 131 -DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209 (504)
T ss_dssp -GTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHH
T ss_pred -chhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcc
Confidence 111110 000111133567899999999999999999999999999888888777888 8899999999999999
Q ss_pred hhH-HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCCCHHH
Q 048242 250 GWC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPPPPPI 326 (430)
Q Consensus 250 gl~-~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~ 326 (430)
++. .++.++..|+++++.+.+++..+++.|+++++|+++++|++++.+.+.... ...+ +++||.+++||+++++++
T Consensus 210 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~ 288 (504)
T 1t5h_X 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAV 288 (504)
T ss_dssp HHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCC-CTTCCEEEECCTTCCHHH
T ss_pred hHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccccccc-CccccEEEEcCCcCCHHH
Confidence 985 578888999999999999999999999999999999999999999876422 2334 899999999999999999
Q ss_pred HHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCC---CCCCCCCCce
Q 048242 327 LLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTN---QPIPADGKTI 402 (430)
Q Consensus 327 ~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~---~~~~~~~~~~ 402 (430)
.++++ .++.++++.||+||++ .+.... . ...+++|+|.+++ +++|+|++ + ++++.| +.
T Consensus 289 ~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-~------------~~~~~~g~p~~~~-~~~i~~~~-~~~~~~~~~g--~~ 350 (504)
T 1t5h_X 289 LETVHQHLPGEKVNIYGTTEAM-NSLYMR-Q------------PKTGTEMAPGFFS-EVRIVRIG-GGVDEIVANG--EE 350 (504)
T ss_dssp HHHHHHHCCSEEEEEEEETTTE-EEEEEE-S------------CSSSSEEBCCTTC-CEEEECTT-SCTTCBCCTT--CC
T ss_pred HHHHHHhcCcceeeeecccccc-cccccc-C------------CCCCccccCCCCC-ceeEEecc-CCCCCcCCCC--Cc
Confidence 99998 5699999999999993 222211 1 1347899999999 99999987 6 899988 89
Q ss_pred eEEEEe-cCcccccccCCcccchHhhhCC
Q 048242 403 GEVVMR-GNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 403 Gel~v~-g~~v~~gY~~~~~~t~~~f~dg 430 (430)
|||+|+ |++++.|||++|++|+++|.||
T Consensus 351 GEl~v~gg~~~~~GY~~~~~~t~~~f~~g 379 (504)
T 1t5h_X 351 GELIVAASDSAFVGYLNQPQATAEKLQDG 379 (504)
T ss_dssp EEEEEECCTTSCCCBTTCHHHHHHHEETT
T ss_pred ceEEEeCCceeeceecCCchhhhhhhcCC
Confidence 999999 9999999999999999999765
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-57 Score=452.07 Aligned_cols=359 Identities=22% Similarity=0.254 Sum_probs=302.3
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
...++.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|++|.++.+++.++++.++++++|++.+....+ .....+.+.+..
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~------------------- 198 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL---------------TGTTTLYVEDEA------------------- 198 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS---------------CSSEEEECCC---------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc---------------cCCcceeeeccc-------------------
Confidence 9999999999999999999999999987542210 111112111110
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSL 257 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~ 257 (430)
..............++++++|+|||||||.||||+++|+++.+.+.. ...++++.+|++++.+|++|..+...++.+
T Consensus 199 --~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 275 (570)
T 4gr5_A 199 --ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGA 275 (570)
T ss_dssp -------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHH
T ss_pred --cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHH
Confidence 00011111123456899999999999999999999999999766544 445678899999999999988777778889
Q ss_pred HhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-hc-
Q 048242 258 AALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS-QK- 333 (430)
Q Consensus 258 l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~-~~- 333 (430)
++.|+++++.+ .+++..+++.|+++++|+++++|+++..+.+.... . +++||.+++||+++++++.++++ .+
T Consensus 276 l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~-~~~lr~~~~gG~~l~~~~~~~~~~~~~ 351 (570)
T 4gr5_A 276 LLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---A-FEGVRYAITGGEPASVPHVAKARRDHP 351 (570)
T ss_dssp HTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHHCT
T ss_pred HhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---h-CCCceEEEEecccCCHHHHHHHHHhCC
Confidence 99999999986 47899999999999999999999999999976532 3 88999999999999999999888 55
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++++++.||+||++++++.+.... ........++|+|++++ +++|+|++ +++++.| ++|||+|+|++++
T Consensus 352 ~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~v~i~d~~-~~~~~~G--~~GEl~v~g~~v~ 420 (570)
T 4gr5_A 352 ALRLGNGYGPAESMGFTTHHAVVA-------GDLSGTALPIGVPLAGK-RAYVLDDD-LKPAANG--ALGELYVAGAGLA 420 (570)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCG-------GGTTSSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCC
T ss_pred CcEEEEeechhhheeeeeeeeecc-------cccCCCccccceeeCCC-EEEEECCC-CCCCCCC--CcEEEEEeecccc
Confidence 899999999999988776554321 11123346799999999 99999988 9999998 9999999999999
Q ss_pred ccccCCcccchHhhh
Q 048242 414 KGYLKNPKANEEAFA 428 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~ 428 (430)
.|||+++++|+++|.
T Consensus 421 ~GY~~~~~~t~~~f~ 435 (570)
T 4gr5_A 421 HGYVSRPALTAERFV 435 (570)
T ss_dssp CEETTCHHHHHHHEE
T ss_pred hhcCCCchhhhcccc
Confidence 999999999999983
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=445.54 Aligned_cols=375 Identities=17% Similarity=0.238 Sum_probs=311.5
Q ss_pred CCHHHHHHHHHhh-----CCCcceEEEC-----CeeeeHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEcCCchhHHHHHH
Q 048242 20 LTPLWFLERAATV-----HPTRKSVVYE-----SKHYTWQQTYQRCRRLASALSQL-SIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 20 ~t~~~~l~~~~~~-----~p~~~a~~~~-----~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
.++.++|++.++. +|+++|+++. ++++||+||.++++++|+.|.+. |+++||+|+|+++|++++++++|
T Consensus 38 ~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~l 117 (570)
T 3c5e_A 38 NFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVIL 117 (570)
T ss_dssp CHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3567899999998 9999999972 37899999999999999999998 99999999999999999999999
Q ss_pred HhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccc
Q 048242 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYAL 168 (430)
Q Consensus 89 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (430)
||+++|++++|++|.++.+++.++++.++++++|++.+....+.......+ ....++.+++...
T Consensus 118 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--------- 181 (570)
T 3c5e_A 118 GCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP-------SLRIKLLVSEKSC--------- 181 (570)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT-------TCCEEEEESSSCC---------
T ss_pred HHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC-------ceeEEEEecccCc---------
Confidence 999999999999999999999999999999999999887665554332222 3445555554211
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHH-HHHHHHhhcCCCCCCEEEeccCchh
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYL-MSLNVVLTWGMKEGAVYLWTLPIFH 247 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~pl~h 247 (430)
.+...+.+++........ .....++++++|+|||||||.||||+++|+.+.. ..... ..+++..+|++++..|++|
T Consensus 182 -~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 182 -DGWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp -TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred -cccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 123456665544332211 1345678999999999999999999999994332 33444 6678899999999999999
Q ss_pred hhhhH-HHHHHHhhcceEEEeC--CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCH
Q 048242 248 GNGWC-FTWSLAALCGTSVMLR--QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324 (430)
Q Consensus 248 ~~gl~-~~~~~l~~g~~~v~~~--~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~ 324 (430)
.+++. .++.++..|+++++.+ .+++..+++.|+++++|+++++|++++.+.+.. ....+ +++||.+++||+++++
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~-~~~lr~i~~gGe~l~~ 336 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYK-FPHLQNCVTVGESLLP 336 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCC-CTTCCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccc-cccceEEEEcCCcCCH
Confidence 99987 5778888999999986 689999999999999999999999999999873 22334 8999999999999999
Q ss_pred HHHHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCcee
Q 048242 325 PILLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIG 403 (430)
Q Consensus 325 ~~~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~G 403 (430)
++.++++ .+++++++.||+||++..++..... ....+++|+|++++ +++|+|++ +++++.| +.|
T Consensus 337 ~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~~-g~~~~~G--~~G 401 (570)
T 3c5e_A 337 ETLENWRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDDK-GNVLPPG--TEG 401 (570)
T ss_dssp HHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECTT-SCBCCTT--CCE
T ss_pred HHHHHHHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECCC-CCCCCCC--CCC
Confidence 9999998 5799999999999998655443211 12347899999999 99999988 9999998 899
Q ss_pred EEEEe-----cCcccccccCCcccchHhhhCC
Q 048242 404 EVVMR-----GNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 404 el~v~-----g~~v~~gY~~~~~~t~~~f~dg 430 (430)
||+|+ |++++.|||++|++|.+.|.||
T Consensus 402 El~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~ 433 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFSGYVDNPDKTAANIRGD 433 (570)
T ss_dssp EEEEECSSBCCTTCCCEETTCHHHHHHTEETT
T ss_pred eeEEeccCCCCchhhccccCChhHhhhhhcCC
Confidence 99999 9999999999999999998654
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-56 Score=449.77 Aligned_cols=375 Identities=20% Similarity=0.263 Sum_probs=314.6
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.+...++.++|+++++ |+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 3557889999999887 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccH-----HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccC
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYF-----ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSK 170 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (430)
+++|++|.++.+++.++++.+++++++++.+.. ........... ....+...++..
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------ 161 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS-------SIRVVQLLNDSG------------ 161 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST-------TCCEEEEETCCS------------
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC-------ccceeeeccccc------------
Confidence 999999999999999999999999999987653 22333333222 334444444321
Q ss_pred CccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhh
Q 048242 171 GVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~g 250 (430)
...+.+......... ...+..++++++|+|||||||.||||+++|+++.+.+.+....+++..++++++.+|++|.++
T Consensus 162 -~~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 162 -EHNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp -TTBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 123333333322221 123456789999999999999999999999999999999988999999999999999999988
Q ss_pred hH--HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC--CCCCCCceeEEeecCCCCCHHH
Q 048242 251 WC--FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED--TILPLPHVVNVNTGGSPPPPPI 326 (430)
Q Consensus 251 l~--~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~--~~~~l~~lr~v~~~G~~l~~~~ 326 (430)
+. ..+.+++.|+++++.+.+++..+++.++++++|+++++|+++..+.+..... ..+ +++||.+++||+++++++
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~i~~gGe~l~~~~ 318 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQ-LASLKLLQVGGARLSATL 318 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTT-TTTCCEEEEESSCCCHHH
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccccc-CCCccEEEEcCCcCCHHH
Confidence 77 4888899999999999899999999999999999999999999988643222 124 899999999999999999
Q ss_pred HHHHH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCcc-ccccceEEeeCCCCCCCCCCCCceeE
Q 048242 327 LLAMS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKC-MCLEGLDVLDTKTNQPIPADGKTIGE 404 (430)
Q Consensus 327 ~~~~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~-~~~~~~~v~d~~~~~~~~~~~~~~Ge 404 (430)
.+++. .+++++++.||+||++..++.... .......++|+|+ +++ +++|+|++ +++++.| ++||
T Consensus 319 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~----------~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~p~G--~~GE 384 (617)
T 3rg2_A 319 AARIPAEIGCQLQQVFGMAEGLVNYTRLDD----------SAEKIIHTQGYPMCPDD-EVWVADAE-GNPLPQG--EVGR 384 (617)
T ss_dssp HHHHHHHTCSEEEEEEEETTEEEEECCTTS----------CHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEE
T ss_pred HHHHHHHhCCcEEEEeccCcceeecccCCC----------cccccccCCCccCCCCc-eEEEECCC-CCCCCCC--CceE
Confidence 99998 669999999999998755443211 1123456899997 677 89999987 9999999 8999
Q ss_pred EEEecCcccccccCCcccchHhhh
Q 048242 405 VVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 405 l~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
|+|+|+++++|||++|++|+++|.
T Consensus 385 l~i~G~~v~~GY~~~p~~t~~~f~ 408 (617)
T 3rg2_A 385 LMTRGPYTFRGYYKSPQHNASAFD 408 (617)
T ss_dssp EEEECSSSCSCCTTCHHHHHHHBC
T ss_pred EEecCccccchhcCChhhhhhccC
Confidence 999999999999999999999993
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-56 Score=438.83 Aligned_cols=365 Identities=17% Similarity=0.185 Sum_probs=305.9
Q ss_pred CCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 18 TALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
...++.++|++.++++|+++|+.+.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|++|.++.+++.++++.++++++|++.+....+ ....++.+. .+.+
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---------------~~~~~~~~~------------------~~~~ 128 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---------------EGISLVSLS------------------EIES 128 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---------------TTSEEEEHH------------------HHHH
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCcccccc---------------ccCcccchh------------------hhhh
Confidence 9999999999999999999999999987542100 001111110 0111
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh--cCCCCCCEEEeccCchhhhhhHHHH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT--WGMKEGAVYLWTLPIFHGNGWCFTW 255 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~~~~~pl~h~~gl~~~~ 255 (430)
......+ ........++++++|+|||||||.||+|+++|+++.+.+.+.... +++..++++++..|++|..++...+
T Consensus 129 ~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 207 (521)
T 3l8c_A 129 AKLAEMP-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWA 207 (521)
T ss_dssp HHHHTCC-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHH
T ss_pred cccccCC-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHH
Confidence 1111111 111234578999999999999999999999999999887777665 6778999999999999999988888
Q ss_pred HHHhhcceEEEeCCC---CHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHH-
Q 048242 256 SLAALCGTSVMLRQA---SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMS- 331 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~---~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~- 331 (430)
.++..|+++++.+.+ ++..+++.+.++++|+++++|+++..+.........+ +++||.+++||+++++++.+++.
T Consensus 208 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~ 286 (521)
T 3l8c_A 208 PTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAK-MPALTHFYFDGEELTVSTARKLFE 286 (521)
T ss_dssp HHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccccc-CccceEEEEecccCCHHHHHHHHH
Confidence 889999999998754 8999999999999999999999999998877665566 89999999999999999999998
Q ss_pred hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 332 QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 332 ~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
.+ ++++++.||+||+++.++.+.... .........++|+|++++ +++|+|++ +++++.| +.|||+|+|+
T Consensus 287 ~~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~ 356 (521)
T 3l8c_A 287 RFPSAKIINAYGPTEATVALSAIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDED-GKELSSG--EQGEIIVTGP 356 (521)
T ss_dssp HCTTCEEEEEECCGGGSSCSEEEEECH------HHHHHCSSCEEEEECTTS-CEEEECTT-SCBCCTT--CCEEEEEEST
T ss_pred HCCCceEEeCcCccHHhhhhceeeccc------ccccCCCccccccccCCC-EEEEECCC-cCCCCCC--CceEEEeccc
Confidence 55 899999999999988776654321 111222446899999999 99999987 9999998 8999999999
Q ss_pred cccccccCCcccchHhh
Q 048242 411 MVMKGYLKNPKANEEAF 427 (430)
Q Consensus 411 ~v~~gY~~~~~~t~~~f 427 (430)
+++.|||++|++|++.|
T Consensus 357 ~v~~GY~~~~~~t~~~f 373 (521)
T 3l8c_A 357 AVSKGYLNNPEKTAEAF 373 (521)
T ss_dssp TSCSCBTTCHHHHHHHE
T ss_pred ccChhhcCCchHhhccC
Confidence 99999999999999998
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-56 Score=471.05 Aligned_cols=387 Identities=19% Similarity=0.286 Sum_probs=323.8
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 19 ALTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 19 ~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
..++.++|++.++++|+++|+++. ++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 579999999999999999999996 689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++++++.++++.++++++|++.+....+...... ....++.+++.... ....+...+.
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~------~~~~~~~~~~ 204 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---------DGVVIVCIDDNESV------PIPEGCLRFT 204 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---------SCCEEEECCCCTTS------CCCTTEEEGG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---------CCceEEEeCCcccc------cCCcccccHH
Confidence 99999999999999999999999999998776555444321 22345555432111 1122334555
Q ss_pred hhhhcCCCC--CCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh----hcCCCCCCEEEeccCchhhhh
Q 048242 177 KLLETGDPE--FAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL----TWGMKEGAVYLWTLPIFHGNG 250 (430)
Q Consensus 177 ~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~pl~h~~g 250 (430)
++....... ........++++++|+|||||||.||||+++|+++.+.+..... .+.+..+|++++.+|++|.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 284 (979)
T 3tsy_A 205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284 (979)
T ss_dssp GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHH
T ss_pred HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHH
Confidence 554433221 11223467899999999999999999999999999888776554 346788999999999999999
Q ss_pred hH-HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 251 WC-FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 251 l~-~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
+. .++.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+.......+ +++||.+++||+++++++.++
T Consensus 285 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~ 363 (979)
T 3tsy_A 285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYD-LSSIRVVKSGAAPLGKELEDA 363 (979)
T ss_dssp HHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSC-CTTCCEEEESSCCCCSSHHHH
T ss_pred HHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHH
Confidence 86 4677888999999999999999999999999999999999999999887766666 999999999999999999999
Q ss_pred HH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEE
Q 048242 330 MS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVM 407 (430)
Q Consensus 330 ~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v 407 (430)
++ .+ ++++++.||+||+++.++.+..... .......+++|+|++++ +++|+|++++++++.| ++|||+|
T Consensus 364 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i 434 (979)
T 3tsy_A 364 VNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICI 434 (979)
T ss_dssp HHHHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEE
T ss_pred HHHHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEE
Confidence 98 56 8999999999999877665422110 01112447899999999 9999998889999998 8999999
Q ss_pred ecCcccccccCCcccchHhh-hCC
Q 048242 408 RGNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 408 ~g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
+|++++.|||++|++|++.| .||
T Consensus 435 ~g~~v~~GY~~~p~~t~~~f~~~g 458 (979)
T 3tsy_A 435 RGHQIMKGYLNNPAATAETIDKDG 458 (979)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTS
T ss_pred ECCCccccccCChhhhhhhccCCC
Confidence 99999999999999999999 443
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-56 Score=449.04 Aligned_cols=384 Identities=18% Similarity=0.219 Sum_probs=312.8
Q ss_pred CCHHHHHHHHHhhCCCcceEEE------CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhc
Q 048242 20 LTPLWFLERAATVHPTRKSVVY------ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMT 93 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~------~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~ 93 (430)
.++.++|+++++.+|+++|+++ .++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 3577889999999999999998 2378999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChhhHHHHHhhcCceEEEeccccH---------HHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcc
Q 048242 94 GAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYF---------ALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPL 164 (430)
Q Consensus 94 G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (430)
|++++|++|.++++++.++++.++++++|+++... ..+.+...... ......++.++.......
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~~~~~-- 228 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN-----VTSVEHVIVLKRTGSDID-- 228 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT-----CCSCCEEEEECSSCCCCC--
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC-----cCCCCEEEEEeCCCCccc--
Confidence 99999999999999999999999999999987542 22332221110 012355666654321100
Q ss_pred cccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHH-HHHhhcCCCCCCEEEecc
Q 048242 165 EYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL-NVVLTWGMKEGAVYLWTL 243 (430)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 243 (430)
........|.+++....... ......++++++|+|||||||+||||+++|.++...+. .....++++.+|++++..
T Consensus 229 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~ 305 (652)
T 1pg4_A 229 --WQEGRDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA 305 (652)
T ss_dssp --CCBTTEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred --ccCCCceeHHHHHhhcCCCC-CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEcc
Confidence 01112345777665433221 12345678999999999999999999999999876654 445567899999999999
Q ss_pred Cchhhhhh-HHHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCC--CCCCCCCCceeEEe
Q 048242 244 PIFHGNGW-CFTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPP--EDTILPLPHVVNVN 316 (430)
Q Consensus 244 pl~h~~gl-~~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~--~~~~~~l~~lr~v~ 316 (430)
|++|++|+ ..++.+++.|+++++.+. +++..+++.|+++++|+++++|++++.+.+... ....+ +++||.++
T Consensus 306 ~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~ 384 (652)
T 1pg4_A 306 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILG 384 (652)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEE
T ss_pred CCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCC-cCceEEEE
Confidence 99999998 457889999999999864 589999999999999999999999999998654 23345 89999999
Q ss_pred ecCCCCCHHHHHHHH-hcC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCC
Q 048242 317 TGGSPPPPPILLAMS-QKG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTN 392 (430)
Q Consensus 317 ~~G~~l~~~~~~~~~-~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~ 392 (430)
+||+++++++.++++ .+| +++++.||+||+++.++...... ...+.+++|+|++++ +++|+|++ |
T Consensus 385 ~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~~-g 453 (652)
T 1pg4_A 385 SVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDNE-G 453 (652)
T ss_dssp EESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECTT-C
T ss_pred EecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECCC-C
Confidence 999999999999998 567 89999999999987766543211 112458999999999 99999988 9
Q ss_pred CCCCCCCCceeEEEEec--CcccccccCCcccchHhh
Q 048242 393 QPIPADGKTIGEVVMRG--NMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 393 ~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~f 427 (430)
++++.| +.|||+|+| |+++.|||+|++.+.+.|
T Consensus 454 ~~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~ 488 (652)
T 1pg4_A 454 HPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTY 488 (652)
T ss_dssp CBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHH
T ss_pred CCcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhh
Confidence 999988 899999999 799999999999988776
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-55 Score=443.80 Aligned_cols=385 Identities=16% Similarity=0.200 Sum_probs=312.4
Q ss_pred CCHHHHHHHHHhhCCCcceEEE------CCeeeeHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 20 LTPLWFLERAATVHPTRKSVVY------ESKHYTWQQTYQRCRRLASALS-QLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~------~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
.++.++|+++++.+|+++|+++ ..+++||+||.++++++|+.|. ++|+++||+|+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 4678899999999999999998 2478999999999999999999 99999999999999999999999999999
Q ss_pred cCCeeeeccccCChhhHHHHHhhcCceEEEeccccHH---------HHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCc
Q 048242 93 TGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFA---------LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP 163 (430)
Q Consensus 93 ~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (430)
+|++++|++|.++.+++.+++++++++++|+++.... .+.+.....+ ....++.++........
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP-------GVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT-------TCCEEEEECSSCCSSCC
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC-------CCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999876421 2222211111 34566666543210000
Q ss_pred ccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHH-HHHhhcCCCCCCEEEec
Q 048242 164 LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL-NVVLTWGMKEGAVYLWT 242 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~ 242 (430)
........|.+++...... .......++++++|+|||||||+||||+++|.++...+. .....+++..+|++++.
T Consensus 235 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 ---FHAPRDLDWATEKKKYKTY-YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp ---CCSSSEEEHHHHHTTSCSC-CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred ---cCCCccccHHHHHhhcCCC-CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0112234566666543322 122345679999999999999999999999999876654 44556789999999999
Q ss_pred cCchhhhhhH-HHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEE
Q 048242 243 LPIFHGNGWC-FTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNV 315 (430)
Q Consensus 243 ~pl~h~~gl~-~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v 315 (430)
.|++|+.|.. .++.+++.|+++++++. +++..+++.|+++++|+++++|++++.+.+.... ...+ +++||.+
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~-l~sLr~i 389 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCL 389 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEE
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCC-cCceEEE
Confidence 9999999984 57888999999999864 5899999999999999999999999999886542 2345 8999999
Q ss_pred eecCCCCCHHHHHHHH-hcC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCC
Q 048242 316 NTGGSPPPPPILLAMS-QKG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKT 391 (430)
Q Consensus 316 ~~~G~~l~~~~~~~~~-~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~ 391 (430)
+++|+++++++.++++ .+| +++++.||+||+++.++.+..... ...+.+++|+|++++ +++|+|+++
T Consensus 390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~--------~~~~~gs~G~p~~g~-~v~i~d~~~ 460 (663)
T 1ry2_A 390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV--------TPMKPGSASFPFFGI-DAVVLDPNT 460 (663)
T ss_dssp EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC--------CCCCTTCCCEECTTC-CEEEECSSS
T ss_pred EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCC--------cccCCCccccCcCCC-eEEEEcCCC
Confidence 9999999999999998 567 899999999999877665432110 012458999999999 999999945
Q ss_pred CCCCCC-CCCceeEEEEec--CcccccccCCcccchHhh
Q 048242 392 NQPIPA-DGKTIGEVVMRG--NMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 392 ~~~~~~-~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~f 427 (430)
|++++. | +.|||+++| |+++.|||+|++++.+.|
T Consensus 461 g~~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~ 497 (663)
T 1ry2_A 461 GEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTY 497 (663)
T ss_dssp TTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHH
T ss_pred CCcCCCCC--cceEEEEecCCCchhcccccChHHHHHhh
Confidence 999988 6 899999999 589999999999998887
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-55 Score=431.63 Aligned_cols=368 Identities=17% Similarity=0.219 Sum_probs=295.6
Q ss_pred CCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNC 99 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~ 99 (430)
+|+.++|+++++++|+++|+++.++++||+||.++++++|+.|.++ +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 3677899999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCc---ccccccCCccc--
Q 048242 100 INFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP---LEYALSKGVTE-- 174 (430)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~-- 174 (430)
++|.++.+++.++++.++++++|++.+..... ..++...+....... ...........
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRG-----------------FQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTT-----------------SEEEETTC-----------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEcccccccc-----------------ccccccccceeeeeecccccccccccccccc
Confidence 99999999999999999999999987643211 111111000000000 00000000000
Q ss_pred --hhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH
Q 048242 175 --YEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC 252 (430)
Q Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~ 252 (430)
...................++++++|+|||||||.||+|+++|+++.+.+.+....+++..+|++++.+|++|.+|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence 001111111111112345789999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHh
Q 048242 253 FTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQ 332 (430)
Q Consensus 253 ~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~ 332 (430)
.++.+++.|+++++.+.+++..+++.++++++|+++++|++++.+.+..... ..+||.+++||+++++++.+++++
T Consensus 221 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~lr~i~~gG~~l~~~~~~~~~~ 296 (501)
T 3ipl_A 221 VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE----PYNLQKILLGGAKLSATMIETALQ 296 (501)
T ss_dssp HHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS----CTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC----cCcccEEEEeCCCCCHHHHHHHHH
Confidence 9889999999999999999999999999999999999999999999876443 338999999999999999999998
Q ss_pred cCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcc
Q 048242 333 KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMV 412 (430)
Q Consensus 333 ~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v 412 (430)
+++++++.||+||+++.++... ........+++|+|++++ +++|+|++ .+ +.|||+|+|+++
T Consensus 297 ~~~~~~~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~ 358 (501)
T 3ipl_A 297 YNLPIYNSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANV 358 (501)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTS
T ss_pred hCCCEeccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccch
Confidence 8999999999999976655432 222334568899999999 99999986 23 679999999999
Q ss_pred cccccCCcccchHhhhCC
Q 048242 413 MKGYLKNPKANEEAFANG 430 (430)
Q Consensus 413 ~~gY~~~~~~t~~~f~dg 430 (430)
+.|||++++.|.+ |.||
T Consensus 359 ~~gY~~~~~~t~~-~~~g 375 (501)
T 3ipl_A 359 MNGYLYPTDLTGT-FENG 375 (501)
T ss_dssp CSCCSBSTTCCCS-EETT
T ss_pred hhhhCcChhhcch-hcCC
Confidence 9999999999876 6554
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=442.12 Aligned_cols=380 Identities=18% Similarity=0.160 Sum_probs=305.9
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEEC----CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhh
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYE----SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPM 92 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~----~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~ 92 (430)
....++.++|++.++.+|+++|+++. ++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 45679999999999999999999874 48999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccC---ChhhHHHHHhhcCceEEEeccccHHHHHHHH-HHhhccCCCCCCCCeEEEecCCCCCCCcccccc
Q 048242 93 TGAVLNCINFRL---NPLNVAIILGHAEAALVFVDQQYFALAEEAL-KIMEGKSEGLFKPPVLIVIGDETCDRAPLEYAL 168 (430)
Q Consensus 93 ~G~~~~~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (430)
+|++++|++|.. +.+++.++++.+++++++++.+....+.... ...+ ....+..+..
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~------------ 148 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP-------KFLKIPAIAL------------ 148 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC-------EETTEEEEEG------------
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc-------cccccceeec------------
Confidence 999999999987 4578999999999999999887554433221 1100 0011111110
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhh
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHG 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~ 248 (430)
++.... ...........++++++|+|||||||.||||+++|+++.+.+.+....+++..+|++++.+|++|.
T Consensus 149 -------~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 220 (590)
T 3kxw_A 149 -------ESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHD 220 (590)
T ss_dssp -------GGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSH
T ss_pred -------hhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcc
Confidence 000000 001111234568899999999999999999999999999999999899999999999999999999
Q ss_pred hhhHH-HHHHHhhcceEEEeCCC----CHHHHHHHHHhhCceEEeeccHHHHHHHcCC---CCCCCCCCCceeEEeecCC
Q 048242 249 NGWCF-TWSLAALCGTSVMLRQA----SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP---PEDTILPLPHVVNVNTGGS 320 (430)
Q Consensus 249 ~gl~~-~~~~l~~g~~~v~~~~~----~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~---~~~~~~~l~~lr~v~~~G~ 320 (430)
+|+.. ++.+++.|+++++.+.+ ++..+++.|+++++|++.++|.++..+.+.. .....+ +++||.+++||+
T Consensus 221 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~~~~gg~ 299 (590)
T 3kxw_A 221 MGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLD-LSSWVTAFNGAE 299 (590)
T ss_dssp HHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCC-CTTCCEEEECSS
T ss_pred hhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCC-chhhHHHhhCCC
Confidence 99886 78888899999998765 8899999999999999999999999988752 223344 899999999999
Q ss_pred CCCHHHHHHHH-hc------CcEEEeeecCccccccccccccCCCCCC----------------CChhhhhhhccccCCc
Q 048242 321 PPPPPILLAMS-QK------GFRVTHVYGLSEINGPATVCAWNPNWDS----------------LPFEAQARLNARQGVK 377 (430)
Q Consensus 321 ~l~~~~~~~~~-~~------~~~v~~~YG~tE~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~vG~~ 377 (430)
++++++.++++ .+ +.++++.||+||+++.++.+.....+.. ...........++|+|
T Consensus 300 ~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p 379 (590)
T 3kxw_A 300 PVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNP 379 (590)
T ss_dssp CCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEE
T ss_pred CCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCC
Confidence 99999999998 44 3469999999999887776543211100 0001122345789999
Q ss_pred cccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccCCcccchHhhhC
Q 048242 378 CMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFAN 429 (430)
Q Consensus 378 ~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~d 429 (430)
+++ ++|+|++++++++.| ++|||+|+|++++.|||++|++|+++|.+
T Consensus 380 ~~~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~ 426 (590)
T 3kxw_A 380 IQE---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAG 426 (590)
T ss_dssp SSE---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCB
T ss_pred CCC---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhc
Confidence 996 678999889999998 89999999999999999999999999953
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-54 Score=430.19 Aligned_cols=369 Identities=22% Similarity=0.225 Sum_probs=296.3
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCcceEEECC----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH
Q 048242 14 PANFTALTPLWFLERAATVHPTRKSVVYES----------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM 83 (430)
Q Consensus 14 ~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~----------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~ 83 (430)
.......++.++|+++++++|+++|+++.+ +++||+||.++++++|+.|.+.|+ +||+|+++++|++++
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 344567899999999999999999999743 789999999999999999999999 799999999999999
Q ss_pred HHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCc
Q 048242 84 YEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAP 163 (430)
Q Consensus 84 ~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (430)
++++|||+++|++++|++|.++.+++.++++.++++++|++.+...... ......++...
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~-------- 152 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------------LPPETKVLDTK-------- 152 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------------CCTTCEEEETT--------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------------cCccceeeccc--------
Confidence 9999999999999999999999999999999999999999865432110 00111122111
Q ss_pred ccccccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh--------cCCCC
Q 048242 164 LEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT--------WGMKE 235 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~--------~~~~~ 235 (430)
...+.+.+....... ......++++++|+|||||||.||||+++|+++.+.+...... +.+..
T Consensus 153 --------~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (562)
T 3ite_A 153 --------NQSFIENLSTQDTSD-ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGG 223 (562)
T ss_dssp --------CHHHHHHHHHSCCSC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTT
T ss_pred --------chhhhhhcccccccc-cccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCc
Confidence 112223222222221 1134567889999999999999999999999998877655443 34678
Q ss_pred CCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCC-HHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeE
Q 048242 236 GAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQAS-AKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVN 314 (430)
Q Consensus 236 ~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~-~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~ 314 (430)
.+++++..|++|..++...+.++..|+++++.+.+. +..+.+.++++++|+++++|++++.+.... .+ +++||.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~-~~~lr~ 298 (562)
T 3ite_A 224 VGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----ED-APHLVY 298 (562)
T ss_dssp TCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GG-STTCCE
T ss_pred CceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cc-cCceEE
Confidence 899999999999988888888999999998886543 567889999999999999999998875443 23 889999
Q ss_pred EeecCCCCCHHHHHHHHh-cCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCC
Q 048242 315 VNTGGSPPPPPILLAMSQ-KGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQ 393 (430)
Q Consensus 315 v~~~G~~l~~~~~~~~~~-~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~ 393 (430)
+++||+++++++.+++++ +++++++.||+||+++.++.....+. ....++|+|++++ +++|+|+++++
T Consensus 299 ~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~~ 367 (562)
T 3ite_A 299 LGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPGSNE 367 (562)
T ss_dssp EEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTTSSC
T ss_pred EEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCCCCC
Confidence 999999999999999984 59999999999999877766543321 2346899999999 99999988799
Q ss_pred CCCCCCCceeEEEEecCcccccccCCcccchHhhhCC
Q 048242 394 PIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 394 ~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~dg 430 (430)
+++.| +.|||+|+|++++.|||++|++|...|.||
T Consensus 368 ~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g 402 (562)
T 3ite_A 368 HVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDING 402 (562)
T ss_dssp BCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETT
T ss_pred CCCCC--CceEEEEeccccchhhCCCccccccccCCC
Confidence 99998 899999999999999999999988666543
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=462.10 Aligned_cols=371 Identities=18% Similarity=0.205 Sum_probs=308.6
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHH
Q 048242 9 DLPKNPANFTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHF 88 (430)
Q Consensus 9 ~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 88 (430)
.++......+..++.++|+++++++|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|
T Consensus 453 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 532 (1304)
T 2vsq_A 453 GLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGIL 532 (1304)
T ss_dssp TTSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred hcCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHH
Confidence 34444455556899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccc
Q 048242 89 GVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYAL 168 (430)
Q Consensus 89 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (430)
||+++|++++|++|.++.+++.++++.+++++++++.+....+.. .......+.+++..
T Consensus 533 ailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----------~~~~~~~~~~~~~~---------- 591 (1304)
T 2vsq_A 533 GVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----------LPYTGTTLFIDDQT---------- 591 (1304)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----------CCCCSEEEESSCGG----------
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----------cCCCCcEEEecccc----------
Confidence 999999999999999999999999999999999998754321110 00112233322210
Q ss_pred cCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhh
Q 048242 169 SKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHG 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~ 248 (430)
.+ .. ..........++++++|+|||||||+||||+++|+++.+. .+....++++.+|+++...|++|.
T Consensus 592 -----~~----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd 659 (1304)
T 2vsq_A 592 -----RF----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFD 659 (1304)
T ss_dssp -----GG----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTST
T ss_pred -----cc----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHH
Confidence 00 00 1111123456889999999999999999999999999865 455566788899999999999999
Q ss_pred hhhHHHHHHHhhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHH
Q 048242 249 NGWCFTWSLAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPP 325 (430)
Q Consensus 249 ~gl~~~~~~l~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~ 325 (430)
.+...++.+++.|+++++.+. +++..+.+.|.++++|+++++|++++.+..... .. +++||.+++||++++++
T Consensus 660 ~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~-~~~lr~~~~gGe~l~~~ 735 (1304)
T 2vsq_A 660 AFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DW-MKGLRCILFGGERASVP 735 (1304)
T ss_dssp HHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HH-HHTCSEEEEESSCCCHH
T ss_pred HHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hc-CCCccEEEEecCCCCHH
Confidence 888889999999999999864 689999999999999999999999999986532 22 67999999999999999
Q ss_pred HHHHHH-hc-CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCcee
Q 048242 326 ILLAMS-QK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIG 403 (430)
Q Consensus 326 ~~~~~~-~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~G 403 (430)
+.+++. .+ +++++|.||+||+++.++.+...... ......++|+|++++ +++|+|++ +++++.| ++|
T Consensus 736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~-------~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~G 804 (1304)
T 2vsq_A 736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLP-------DSISSLPIGKPISNA-SVYILNEQ-SQLQPFG--AVG 804 (1304)
T ss_dssp HHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCC-------SSCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CCE
T ss_pred HHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcc-------ccCCCCCCceeeCCC-EEEEECCC-cCCCCCC--Cce
Confidence 999997 44 57899999999998877765432210 011336899999999 99999988 9999999 899
Q ss_pred EEEEecCcccccccCCcccchHhh
Q 048242 404 EVVMRGNMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 404 el~v~g~~v~~gY~~~~~~t~~~f 427 (430)
||+|+|+++++||||+|++|+++|
T Consensus 805 El~i~G~~v~~GY~~~p~~T~~~f 828 (1304)
T 2vsq_A 805 ELCISGMGVSKGYVNRADLTKEKF 828 (1304)
T ss_dssp EEEEEETTCCCCBTTCHHHHHHHE
T ss_pred EEEEeccccCccccCCcccchhhh
Confidence 999999999999999999999999
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=424.96 Aligned_cols=355 Identities=21% Similarity=0.257 Sum_probs=286.8
Q ss_pred CCCCHHHHHHHHHhhCCC-cceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 18 TALTPLWFLERAATVHPT-RKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 18 ~~~t~~~~l~~~~~~~p~-~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
+..++.++|.++++++|+ ++|+++.++++||+||.++++++|+.|. .|++|+++++|++++++++|||+++|++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 456788889888999887 9999999999999999999999998874 3789999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++.+++.++++.++++++|++.+.... ... .....+.++..
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~--------~~~~~~~~~~~------------------- 142 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PAL--------GALERVDVDVR------------------- 142 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGG--------TTSEEEECCTT-------------------
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhh--------ccccccccccc-------------------
Confidence 9999999999999999999999999998642100 000 01111111110
Q ss_pred hhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhH-HHH
Q 048242 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWC-FTW 255 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~-~~~ 255 (430)
...........++++++|+|||||||.||||+++|+++.+.+.+....++++.+|++++.+|++|.+|+. .++
T Consensus 143 ------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 216 (505)
T 3nyq_A 143 ------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGIL 216 (505)
T ss_dssp ------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTH
T ss_pred ------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHH
Confidence 0011111345678999999999999999999999999999999988899999999999999999999987 478
Q ss_pred HHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCC---CCCCCCceeEEeecCCCCCHHHHHHHH-
Q 048242 256 SLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED---TILPLPHVVNVNTGGSPPPPPILLAMS- 331 (430)
Q Consensus 256 ~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~---~~~~l~~lr~v~~~G~~l~~~~~~~~~- 331 (430)
.++..|+++++.+.+++..+++.+ ++++|+++++|+++..+.+..... ... ++++|.+++||+++++++.++++
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~-l~~lr~i~~gg~~l~~~~~~~~~~ 294 (505)
T 3nyq_A 217 GPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKA-LAGARLLVSGSAALPVHDHERIAA 294 (505)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHH-HHHCSEEEECSSCCCHHHHHHHHH
T ss_pred HHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcc-cccceEEEECCCCCCHHHHHHHHH
Confidence 889999999999999999999999 889999999999999998743211 122 67899999999999999999998
Q ss_pred hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCC-CCCceeEEEEecC
Q 048242 332 QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPA-DGKTIGEVVMRGN 410 (430)
Q Consensus 332 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~-~~~~~Gel~v~g~ 410 (430)
.+++++++.||+||+++.++..... ....+++|+|++++ +++|+|++ +++++. .++++|||+|+|+
T Consensus 295 ~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~~~~g~~GEl~v~g~ 361 (505)
T 3nyq_A 295 ATGRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEED-GTPIAALDGESVGEIQVRGP 361 (505)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEEST
T ss_pred hcCCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECCC-CCCcccCCCCceEEEEEecC
Confidence 5699999999999998665543221 12347899999999 99999998 888876 1128999999999
Q ss_pred cccccccCCcccchHhhh-CC
Q 048242 411 MVMKGYLKNPKANEEAFA-NG 430 (430)
Q Consensus 411 ~v~~gY~~~~~~t~~~f~-dg 430 (430)
+++.|||++|++|+++|. ||
T Consensus 362 ~v~~GY~~~~~~t~~~f~~~g 382 (505)
T 3nyq_A 362 NLFTEYLNRPDATAAAFTEDG 382 (505)
T ss_dssp TSCCEETTCHHHHHHTBCTTS
T ss_pred chhhhhCCChhHhhhhhcCCC
Confidence 999999999999999994 44
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=253.37 Aligned_cols=216 Identities=13% Similarity=0.089 Sum_probs=177.5
Q ss_pred CCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH---hhcCCCCCCEEEeccCc-hhhhhhHHHHHHHhhcceEEEe
Q 048242 192 RDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV---LTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVML 267 (430)
Q Consensus 192 ~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~pl-~h~~gl~~~~~~l~~g~~~v~~ 267 (430)
..++++++|+|||||||.||+|+++|+++...+.+.. ..+++..+|++++.+|+ +|..|+...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999988877543 45577899999999999 99999998888888888 6666
Q ss_pred CCCCHH-----------------------HHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCH
Q 048242 268 RQASAK-----------------------AIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPP 324 (430)
Q Consensus 268 ~~~~~~-----------------------~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~ 324 (430)
..+++. .+++.|+++++|+++++|+++..+++.......+ +++||.+++||+++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM-KQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH-HHHCSEEEEESSCCCH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc-cCCeeEEEECCccCCH
Confidence 677877 8888999999999999999999998874322233 6899999999999999
Q ss_pred HHHHHHH-hc--CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCc------cccccceEEeeCCCCCCC
Q 048242 325 PILLAMS-QK--GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVK------CMCLEGLDVLDTKTNQPI 395 (430)
Q Consensus 325 ~~~~~~~-~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~------~~~~~~~~v~d~~~~~~~ 395 (430)
++.++++ +. ++++++.||+||+++++..+. ..++|++ .+++ +++|+|+++++++
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~----------------~~~~G~~~~~~~~~~~~-~v~ivD~~~g~~v 308 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLL----------------ITSESQQVIYDSFSPFI-TYDVVDSITAQTV 308 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC----------------BCTTCSSCEEECCTTTE-EEEEECTTTCSBC
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccc----------------cccCCCcccccCCCCCe-EEEEECCCCCcCC
Confidence 9999998 65 899999999999976654321 0248999 9999 9999999669999
Q ss_pred CCCCCceeEEEEecC---cccccccCCcccchHhhh
Q 048242 396 PADGKTIGEVVMRGN---MVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 396 ~~~~~~~Gel~v~g~---~v~~gY~~~~~~t~~~f~ 428 (430)
+.| ++|||+|++. .++.+|+..+..++....
T Consensus 309 p~G--~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~ 342 (369)
T 3hgu_A 309 EYG--ERGNVIVTHLSPWAFYPRVAERDTAIRLPGV 342 (369)
T ss_dssp CTT--CEEEEEEEEEETTEEEEEEEEEEEEEEECCS
T ss_pred CCC--CceEEEEEEcCcccccccccCCceEEEecCC
Confidence 999 9999999983 346788877776654443
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=246.33 Aligned_cols=196 Identities=16% Similarity=0.098 Sum_probs=169.4
Q ss_pred CCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeCCCCHH
Q 048242 194 EWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAK 273 (430)
Q Consensus 194 ~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~ 273 (430)
.+++++|+|||||||.||||++||+++.+.+.+....++++.+|++++++|++|++|+..++.+++.|+++++.+.. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999988642 1
Q ss_pred HHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhcCcEEEeeecCcccccccccc
Q 048242 274 AIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVC 353 (430)
Q Consensus 274 ~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 353 (430)
..++.|+++++|+++++|+++..+++...... + +++||.+++||+++++++.++++++++++++.||+||+++.++..
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~-~-l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~ 191 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATSG-Q-VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALK 191 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTGG-G-GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccccc-c-CCcceEEEEcccCCCchheecccccCceEEeccccccccceeecc
Confidence 23567899999999999999999998765433 4 899999999999999999999999999999999999998877765
Q ss_pred ccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCcccccccC
Q 048242 354 AWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLK 418 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~ 418 (430)
.... ...+.+|.+.|++ ++.+. +.|||+++|+.+..|||.
T Consensus 192 ~~~~-----------~~~g~~~~~~pgv-~~~~~-------------~~Gel~~~g~~~~~g~~~ 231 (358)
T 4gs5_A 192 ALNG-----------PEASELYVFLPGI-QYGVD-------------ERGCLHISGAVTNGQTVQ 231 (358)
T ss_dssp ECSS-----------TTCCSCEEECTTC-EEEEC-------------TTSEEEEESGGGTTCCEE
T ss_pred cccc-----------cccceeeccCCCe-EEEec-------------CcCceEEecccccCccee
Confidence 4332 2347789999998 67652 349999999988877774
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=241.63 Aligned_cols=204 Identities=19% Similarity=0.242 Sum_probs=167.0
Q ss_pred CCCC-CCeeEEEeCCCCCCCCceEEechHHHHHHHHHH---HhhcCCCCCCEEEeccCchhhhhhH-HHHHHHhhcceEE
Q 048242 191 PRDE-WQSIALGYTSGTTANPKGVLVSHRAAYLMSLNV---VLTWGMKEGAVYLWTLPIFHGNGWC-FTWSLAALCGTSV 265 (430)
Q Consensus 191 ~~~~-~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~~~~~pl~h~~gl~-~~~~~l~~g~~~v 265 (430)
..++ +++++++|||||||.||+|+++|+++.+.+... ...+++..+|++++..|+.|..+.. ..+.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 3345889999999999986655544 6777888999999
Q ss_pred EeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCC-CCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecC
Q 048242 266 MLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGL 343 (430)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~ 343 (430)
+.+.+++..+++.|+++++|+++++|+++..+.+.......+ .+++||.+++||+++++++.++++ .+|+++++.||+
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~ 240 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGM 240 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcc
Confidence 988889999999999999999999999999998763322211 168999999999999999999998 559999999999
Q ss_pred ccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 344 SEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 344 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
||+++.++..... .....|.+.+++ +++|+|++++++++.| +.|||+|+|.
T Consensus 241 TE~~~~~~~~~~~-------------~~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~ 291 (436)
T 3qov_A 241 TEMNGPGVAFECQ-------------EQNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL 291 (436)
T ss_dssp GGGTEEEEEEECT-------------TCSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES
T ss_pred hhhcCCeeEEecC-------------CCCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc
Confidence 9996553322211 012356777899 8999997779999998 8999999985
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=240.60 Aligned_cols=204 Identities=16% Similarity=0.149 Sum_probs=167.7
Q ss_pred CCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH---hhcCCCCCCEEEeccCc-hhhhhhHHHHHHHhhcceEEE
Q 048242 191 PRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV---LTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVM 266 (430)
Q Consensus 191 ~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~pl-~h~~gl~~~~~~l~~g~~~v~ 266 (430)
...++++++++|||||||.||+|+++|+++...+.... ..++++.+|++++.+|+ +|..++...+.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999876654333 35778899999999998 788888888888899999998
Q ss_pred eCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCC-CCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCc
Q 048242 267 LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLS 344 (430)
Q Consensus 267 ~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~t 344 (430)
.+.+++..+++.|+++++|+++++|+++..+.+.......+ .+++||.+++||+++++++.++++ .+|+++++.||+|
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 245 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLS 245 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCch
Confidence 88889999999999999999999999999998754322222 047999999999999999999998 5699999999999
Q ss_pred ccccc-ccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 345 EINGP-ATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 345 E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
|+++. ++..... ....++.+.+++ .++|+|++++++++.| +.|||+|+|.
T Consensus 246 E~~g~~~~~~~~~-------------~~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~ 296 (437)
T 2y27_A 246 EVMGPGVASECVE-------------TKDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL 296 (437)
T ss_dssp TTTEEEEEECCTT-------------TCSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES
T ss_pred hhcCCeeEEecCC-------------CCCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC
Confidence 98543 3332211 001255667888 8999998879999998 8999999984
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-29 Score=239.16 Aligned_cols=204 Identities=15% Similarity=0.152 Sum_probs=167.0
Q ss_pred CCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH---hhcCCCCCCEEEeccCc-hhhhhhHHHHHHHhhcceEEE
Q 048242 191 PRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV---LTWGMKEGAVYLWTLPI-FHGNGWCFTWSLAALCGTSVM 266 (430)
Q Consensus 191 ~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~pl-~h~~gl~~~~~~l~~g~~~v~ 266 (430)
...++++++++|||||||.||+|+++|+++........ ..+++..+|++++..|+ +|..++...+.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999876554433 35788999999999998 677777778888899999999
Q ss_pred eCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCC-CCCceeEEeecCCCCCHHHHHHHH-hcCcEEEeeecCc
Q 048242 267 LRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTIL-PLPHVVNVNTGGSPPPPPILLAMS-QKGFRVTHVYGLS 344 (430)
Q Consensus 267 ~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~-~l~~lr~v~~~G~~l~~~~~~~~~-~~~~~v~~~YG~t 344 (430)
.+.+++..+++.|+++++|+++++|+++..+.+.......+ .+++||.+++||+++++++.++++ .+|+++++.||+|
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 247 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLS 247 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCch
Confidence 88889999999999999999999999999998754322222 047999999999999999999998 5699999999999
Q ss_pred ccccc-ccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC
Q 048242 345 EINGP-ATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN 410 (430)
Q Consensus 345 E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~ 410 (430)
|+++. ++..... .....+.+.+++ .++|+|++++++++.| +.|||+|+|.
T Consensus 248 E~~g~~~~~~~~~-------------~~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~ 298 (443)
T 2y4o_A 248 EVMGPGVACECVE-------------TKDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL 298 (443)
T ss_dssp TTTEEEEEEECTT-------------TCCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES
T ss_pred hhcCCeEEeccCC-------------CCCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC
Confidence 98543 3322211 001245566888 8999998779999998 8999999984
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.55 Score=44.19 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=72.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCc--hhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV--PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|.+.+...+..++..+...|+.++|++...++.+ ...+...++++..|+.++++++ .+++.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 5689999998888888888788999999999888853 3445567888999999887765 478889999999999999
Q ss_pred EeccccHHHHHHH
Q 048242 122 FVDQQYFALAEEA 134 (430)
Q Consensus 122 i~~~~~~~~~~~~ 134 (430)
+.....+..+.+.
T Consensus 187 ~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 187 MVTPSYMLSIADE 199 (437)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9988777655543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.68 Score=43.67 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=72.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCc--hhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV--PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+.++++++. .++.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 5689999998888888888788999999999888753 34455678888999998887654 78888999999999999
Q ss_pred EeccccHHHHHHH
Q 048242 122 FVDQQYFALAEEA 134 (430)
Q Consensus 122 i~~~~~~~~~~~~ 134 (430)
+.....+..+.+.
T Consensus 189 ~~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 189 LVTPSYMLNLIDE 201 (443)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9888776655443
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.7 Score=43.48 Aligned_cols=91 Identities=10% Similarity=-0.001 Sum_probs=74.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCc--hhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV--PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|.+.+...+..++..+...++.++|++..+++-+ ...+..+++++..|+.+++.++. .++.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 5799999999898888888888999999999888743 34455778889999998887644 67888999999999999
Q ss_pred EeccccHHHHHHHH
Q 048242 122 FVDQQYFALAEEAL 135 (430)
Q Consensus 122 i~~~~~~~~~~~~~ 135 (430)
+.....+..+.+..
T Consensus 183 ~~~P~~~~~l~~~~ 196 (436)
T 3qov_A 183 HAIPSYAIRLAEVF 196 (436)
T ss_dssp ECCHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 99888776655443
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=3.3 Score=37.71 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=63.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCch--hHHHHHHHhhhcCCeeeeccccCChh--------------
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVP--AMYEVHFGVPMTGAVLNCINFRLNPL-------------- 107 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~~~l~~~~~~~-------------- 107 (430)
..+|.+.+...+..++..+...|+.++|++..++|-+. -.+...++++..|+.+++.. ..+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 56899999888887777777789999999998887622 33444555688899655543 2333
Q ss_pred ---------hHHHHHhhcCceEEEeccccHHHH
Q 048242 108 ---------NVAIILGHAEAALVFVDQQYFALA 131 (430)
Q Consensus 108 ---------~l~~~l~~~~~~~vi~~~~~~~~~ 131 (430)
.+...+++.++.+++.....+..+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 666688999999999887765544
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=84.76 E-value=8.9 Score=36.51 Aligned_cols=97 Identities=9% Similarity=0.108 Sum_probs=72.0
Q ss_pred CCCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH-HHHHHHhhhcCCeeeeccc
Q 048242 33 HPTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM-YEVHFGVPMTGAVLNCINF 102 (430)
Q Consensus 33 ~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l~~ 102 (430)
.++.+|++... ..+|++.+...+..+... .++.++|++...+|-...+ +..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 45667766521 679999988776665543 4889999988887765432 445678888999888775
Q ss_pred cCChhhHHHHHhhcCceEEEeccccHHHHHH
Q 048242 103 RLNPLNVAIILGHAEAALVFVDQQYFALAEE 133 (430)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (430)
..+++.+...+++.++.+++.....+..+..
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 267 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLMQ 267 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence 5678899999999999999998876665443
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=83.97 E-value=7.4 Score=37.95 Aligned_cols=97 Identities=8% Similarity=-0.005 Sum_probs=71.2
Q ss_pred CCCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHH--HHHHhhhcCCeeeecc
Q 048242 33 HPTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE--VHFGVPMTGAVLNCIN 101 (430)
Q Consensus 33 ~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~~~l~ 101 (430)
.++.+|++... ..+|.+.+...+...+.. .++.++|++..++|-...+-. .+++.+..|+..+..+
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 45667776522 679999998877666553 488999999988887655433 3788888999988876
Q ss_pred ccC---ChhhHHHHHhhcCceEEEeccccHHHHH
Q 048242 102 FRL---NPLNVAIILGHAEAALVFVDQQYFALAE 132 (430)
Q Consensus 102 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (430)
+.. .+..+...+++.++.++......+..+.
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHH
Confidence 542 6778888999999999887766555443
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=82.64 E-value=14 Score=35.48 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=71.8
Q ss_pred CCCcceEEEC---------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH--HH-HHHHhhhcCCeeeec
Q 048242 33 HPTRKSVVYE---------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM--YE-VHFGVPMTGAVLNCI 100 (430)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~-~~lA~~~~G~~~~~l 100 (430)
.|+.+|++.. +..+|.+.+...+...... .++.++|++...+|-...+ .. .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4566666642 1679999888776655543 3788999988888765433 22 478888999998876
Q ss_pred cccCChhhHHHHHhhcCceEEEeccccHHHHHHH
Q 048242 101 NFRLNPLNVAIILGHAEAALVFVDQQYFALAEEA 134 (430)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 134 (430)
+ ...+..+...+++.++.+++.....+..+.+.
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 289 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMDA 289 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhC
Confidence 4 56788899999999999999988776655443
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=82.35 E-value=6.5 Score=38.05 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=70.0
Q ss_pred CcceEEEC---------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhH--HHHHHHhhhcCCeeeecccc
Q 048242 35 TRKSVVYE---------SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAM--YEVHFGVPMTGAVLNCINFR 103 (430)
Q Consensus 35 ~~~a~~~~---------~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~~~l~~~ 103 (430)
+.+|++.. ...+|.+.+...+......+...++.++|++..++|-...+ ...+++.+ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 66777753 26799999887766655443335788999988887765433 33456777 999888775 5
Q ss_pred CChhhHHHHHhhcCceEEEeccccHHHHH
Q 048242 104 LNPLNVAIILGHAEAALVFVDQQYFALAE 132 (430)
Q Consensus 104 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (430)
..++.+...+++.++.+++.....+..+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 67888999999999999999887665443
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=81.71 E-value=13 Score=35.52 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=69.2
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhh---cCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLT---WGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.|+.+|++. .+..+|++.+...+..+... .++..+|++...++... -.+...++++..|+..+.++
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCS-EMIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCCEEEecCC
Confidence 355667654 12578999887666555443 47889999988888643 23445677777888888885
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHHHH
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVLNS 296 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l~~ 296 (430)
.....++...+++.++..++..+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 4688899999999999999998876655
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=81.47 E-value=13 Score=35.83 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=70.8
Q ss_pred CCcceEEECC---------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHH---HHHHhhhcCCeeeecc
Q 048242 34 PTRKSVVYES---------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE---VHFGVPMTGAVLNCIN 101 (430)
Q Consensus 34 p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~~~l~ 101 (430)
++.+|++... ..+|.+.+...+...+.. .++.++|++...+|-...+-. .+++.+..|+.++..+
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 4566766421 679999988777666554 488999999888876544322 4788888999888764
Q ss_pred ccCChhhHHHHHhhcCceEEEeccccHHHHHH
Q 048242 102 FRLNPLNVAIILGHAEAALVFVDQQYFALAEE 133 (430)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (430)
...+..+...+++.++.+++.....+..+.+
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 267 -NPEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 4578888899999999999998876655433
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=80.19 E-value=13 Score=35.66 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=64.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHH--HHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEE
Q 048242 44 KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYE--VHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALV 121 (430)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 121 (430)
..+|.+.+...+..++..+ ++.++|++...+|-...+-. .+++++ .|+..+.. +...+..+...+++.++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 6799999888777665544 88999999888887654332 345555 88888766 46788889999999999999
Q ss_pred EeccccHHHHHH
Q 048242 122 FVDQQYFALAEE 133 (430)
Q Consensus 122 i~~~~~~~~~~~ 133 (430)
......+..+..
T Consensus 263 ~~~P~~~~~l~~ 274 (517)
T 3r44_A 263 GAVPAILNFMRQ 274 (517)
T ss_dssp EECHHHHHHHHH
T ss_pred EeHHHHHHHHHh
Confidence 998877665544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 430 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-58 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-54 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-46 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-41 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 2e-34 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-32 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 7e-32 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 201 bits (511), Expect = 1e-58
Identities = 70/422 (16%), Positives = 144/422 (34%), Gaps = 33/422 (7%)
Query: 26 LERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPN 79
L+R + R ++++E KH ++++ ++ R A+ L L I G V++ P
Sbjct: 78 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137
Query: 80 VPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIME 139
VP GAV + I +P VA + + + LV + A ++ + +
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADE-GVRAGRSIPLKK 196
Query: 140 GKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIA 199
+ L P V V R + +G + + L + +
Sbjct: 197 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLF 256
Query: 200 LGYTSGTTANPKGVLVSHRAAYLMSLNVV-LTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
+ YTSG+T PKGVL + + + + G +Y T + G +
Sbjct: 257 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 316
Query: 259 ALCGTSVML-----RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED-TILPLPHV 312
CG + ++ + + + + +H V AP + +++ + +
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376
Query: 313 VNVNTGGSPPPPPILLAMSQK----GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQA 368
+ + G P P +K V + +E G P
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGAI 426
Query: 369 RLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNM--VMKGYLKNPKANEEA 426
L A + ++D + + P +G T G +V+ + + + + E+
Sbjct: 427 ELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSWPGQARTLFGDHERFEQT 483
Query: 427 FA 428
+
Sbjct: 484 YF 485
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 187 bits (475), Expect = 2e-54
Identities = 114/410 (27%), Positives = 170/410 (41%), Gaps = 31/410 (7%)
Query: 25 FLERAATVHPTRKSVVY----ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNV 80
FLERAA + ++ V E T+ + YQR RRL L L +G G V+ L N
Sbjct: 16 FLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 75
Query: 81 PAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEG 140
E +F VP GAVL+ N RL+P +A IL HAE ++ D L E
Sbjct: 76 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR----- 130
Query: 141 KSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIAL 200
+ + E E E A E + +
Sbjct: 131 ----------------GELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGM 174
Query: 201 GYTSGTTANPKGVLVSHRAAYLMSL--NVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLA 258
YT+GTT PKGV+ SHRA L SL ++V + E V L +P+FH N WC ++
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 234
Query: 259 ALCGTSVML-RQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNT 317
+ V+ + ++ + GVT P V ++ + L + +
Sbjct: 235 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG-HRLKTLRRLVV 293
Query: 318 GGSPPPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVK 377
GGS P ++ + G V YGL+E + + +SL E + L A+ G+
Sbjct: 294 GGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLP 353
Query: 378 CMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
+ L V D + +P+P DGK +GEV ++G + GY N +A A
Sbjct: 354 IPLVR-LRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 401
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 168 bits (425), Expect = 1e-46
Identities = 65/421 (15%), Positives = 134/421 (31%), Gaps = 26/421 (6%)
Query: 26 LERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASAL-SQLSIGPGTAVSVLSP 78
++R A P +K++++E T+++ + ++A L + + G V+V P
Sbjct: 65 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 124
Query: 79 NVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIM 138
VP + GA+ + + + ++ + ++ +V + +
Sbjct: 125 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVI--ET 182
Query: 139 EGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSI 198
+ + + + A + + P D +
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 199 ALGYTSGTTANPKGVLVSHRAAYLMSLNVV-LTWGMKEGAVYLWTLPIFHGNGWCFTWSL 257
L YTSG+T PKGV S L +L + T+ + V+ I G +
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 258 AALCGTSVMLRQA-----SAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPED-TILPLPH 311
L G + ++ + + + I EH VT F AP L + A L
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 312 VVNVNTGGSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARL 370
+ + + G P + S+K G + + P + +
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS 422
Query: 371 NARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNM--VMKGYLKNPKANEEAFA 428
G+ + VLD T + + G + ++ + KN + +
Sbjct: 423 FPFFGIDAV------VLDPNTGEELN-TSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYL 475
Query: 429 N 429
N
Sbjct: 476 N 476
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 151 bits (383), Expect = 2e-41
Identities = 80/434 (18%), Positives = 155/434 (35%), Gaps = 42/434 (9%)
Query: 9 DLPKNPANFTAL---TPLWFLERAATVHPTRKSVV-----YESKHYTWQQTYQRCRRLAS 60
++ K PA F L T L +A + + + + T+ + ++ RLA
Sbjct: 3 NIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAE 62
Query: 61 ALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAAL 120
A+ + + + V S N + G G + N N + + ++ +
Sbjct: 63 AMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 122
Query: 121 VFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLE 180
VFV ++ K + I+ D T L
Sbjct: 123 VFVSKKGLQKILNVQKKLP------------IIQKIIIMDSKTDYQGFQSMYTFVTSHLP 170
Query: 181 TGDPEFAWKP-PRDEWQSIA-LGYTSGTTANPKGVLVSHR---AAYLMSLNVVLTWGMKE 235
G E+ + P D ++IA + +SG+T PKGV + HR + + + + +
Sbjct: 171 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 230
Query: 236 GAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLN 295
L +P HG G T V++ + + +++ ++ + + P + +
Sbjct: 231 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS 290
Query: 296 SIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQK--GFRVTHVYGLSEINGPATVC 353
+ D L ++ + +GG+P + A++++ + YGL+E
Sbjct: 291 FFAKSTLID-KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS---AI 346
Query: 354 AWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413
P D P G E V+D T + + + GE+ +RG M+M
Sbjct: 347 LITPEGDDKP--------GAVGKVVPFFE-AKVVDLDTGKTLGVN--QRGELCVRGPMIM 395
Query: 414 KGYLKNPKANEEAF 427
GY+ NP+A
Sbjct: 396 SGYVNNPEATNALI 409
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 132 bits (332), Expect = 2e-34
Identities = 58/409 (14%), Positives = 116/409 (28%), Gaps = 55/409 (13%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
E + P ++V E++ T+ + + +LA + IG T V ++ ++
Sbjct: 28 LFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF 87
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
V G I+ + IL ++A ++ + L
Sbjct: 88 IGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI---------- 137
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTS 204
+ V +E+ P + YTS
Sbjct: 138 ----------------------QFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS 175
Query: 205 GTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTS 264
GTT NPKG ++ H+ + + + + E I + +
Sbjct: 176 GTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASL 235
Query: 265 VMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSP 321
++ + + I + +T P + + + + + T GS
Sbjct: 236 YIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------RILSIQTLITAGSA 288
Query: 322 PPPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCL 381
P L+ ++ + YG +E AT A + Q
Sbjct: 289 TSPS-LVNKWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDE- 346
Query: 382 EGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
Q GE+ + G + +GY K P+ + F +
Sbjct: 347 ---------NLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDN 384
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 125 bits (315), Expect = 2e-32
Identities = 80/413 (19%), Positives = 142/413 (34%), Gaps = 47/413 (11%)
Query: 25 FLERAATVHPTRKSVVY--ESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPA 82
L RAAT P ++ T + R +A+ L + P V+V++PN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKS 142
+ + GAV +N RL +A ++ E + +A+ + G
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSG-- 123
Query: 143 EGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGY 202
+I +GD D P Y P R+ Q + Y
Sbjct: 124 ------ARIIFLGDLVRDGEPYSYG-----------------PPIEDPQREPAQPAFIFY 160
Query: 203 TSGTTANPKGVLVSHR--AAYLMSLNVVLTWGMKEGAVYLWTLPIF-HGNGWCFTWSLAA 259
TSGTT PK ++ R + ++ ++ + V L +P++ + + A
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 260 LCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTI-LPLPHVVNVNTG 318
L GT V++ + + + + VT+ A P L+++ A L L + +V
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280
Query: 319 GSPPPPPILLAMSQK-GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVK 377
G+ P +L + Q ++YG +E + +
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE--------------MAP 326
Query: 378 CMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAFANG 430
E V I A+G+ +V + GYL P+A E +G
Sbjct: 327 GFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDG 379
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 125 bits (313), Expect = 7e-32
Identities = 72/405 (17%), Positives = 119/405 (29%), Gaps = 33/405 (8%)
Query: 25 FLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMY 84
L A + R ++ + H+++++ R RLA+ +L I V V PN+ +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 85 EVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEG 144
EV F + GA+ + AEAA + Y +L
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP 149
Query: 145 LFKPPVLIVIGDETCDRAPLEYALSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTS 204
K ++ G E LE E P L +
Sbjct: 150 TLKNIIVA------------------GEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSG 191
Query: 205 GTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCG-- 262
G+T K + +H V + VYL LP+ H L L
Sbjct: 192 GSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGG 251
Query: 263 TSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPP 322
V+ S + I VT P + ++A V G
Sbjct: 252 RVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFS 311
Query: 323 PPPILLAMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLE 382
+ G + V+G++E + + + QG +
Sbjct: 312 AEAARRVKAVFGCTLQQVFGMAEG--LVNYTRLDDPEEIIV--------NTQGKPMSPYD 361
Query: 383 GLDVLDTKTNQPIPADGKTIGEVVMRGNMVMKGYLKNPKANEEAF 427
V D P + G ++ RG ++GY K + N +F
Sbjct: 362 ESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASF 403
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 91.28 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 85.23 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 84.75 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 83.25 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 81.71 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 80.31 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 80.03 |
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.7e-56 Score=440.69 Aligned_cols=391 Identities=29% Similarity=0.424 Sum_probs=326.8
Q ss_pred CCCCCCHHHHHHHHHhhCCCcceEEECC----eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhh
Q 048242 16 NFTALTPLWFLERAATVHPTRKSVVYES----KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVP 91 (430)
Q Consensus 16 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 91 (430)
.....|+.++|+++++++|+++|+++.. +++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+
T Consensus 7 ~~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 86 (534)
T d1v25a_ 7 MDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVP 86 (534)
T ss_dssp CCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 3346689999999999999999999843 579999999999999999999999999999999999999999999999
Q ss_pred hcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCC
Q 048242 92 MTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171 (430)
Q Consensus 92 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (430)
++|++++|++|.++.+++.++++.++++.++++............... .....+...+.....
T Consensus 87 ~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---------- 149 (534)
T d1v25a_ 87 GMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAPEG---------- 149 (534)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-------SCCEEEESSSCCCTT----------
T ss_pred HhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhccc-------ccceeEEeecccccc----------
Confidence 999999999999999999999999999999999988877766654433 344444443322110
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH--hhcCCCCCCEEEeccCchhhh
Q 048242 172 VTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV--LTWGMKEGAVYLWTLPIFHGN 249 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~pl~h~~ 249 (430)
...... . ...........++++++++|||||||.||+|+++|.++........ ..+....++++++.+|++|.+
T Consensus 150 ~~~~~~-~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 225 (534)
T d1v25a_ 150 YLAYEE-A---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVN 225 (534)
T ss_dssp CEEHHH-H---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHH
T ss_pred cccccc-c---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhc
Confidence 001110 1 1111112345678999999999999999999999999976654433 334567899999999999999
Q ss_pred hhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHH
Q 048242 250 GWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILL 328 (430)
Q Consensus 250 gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~ 328 (430)
++...+..+..|+++++.. .+++..+...+.++++|++.++|.++..+.........+ +++||.+++||+++++.+.+
T Consensus 226 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~-~~~lr~~~~gG~~~~~~~~~ 304 (534)
T d1v25a_ 226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIA 304 (534)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHH
T ss_pred cccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccccc-ccceeEEEEecCCCCHHHHH
Confidence 9999888888888888874 589999999999999999999999999998876555556 99999999999999999999
Q ss_pred HHHhcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEe
Q 048242 329 AMSQKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMR 408 (430)
Q Consensus 329 ~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~ 408 (430)
++++++.++++.||+||+++++..+..................+++|+|++|+ +++|+|++ ++.++.+.+++|||+|+
T Consensus 305 ~~~~~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~i~d~~-~~~~~~~~~~~Gel~v~ 382 (534)
T d1v25a_ 305 RFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLK 382 (534)
T ss_dssp HHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEE
T ss_pred HHHHhCCeeeeeccccccccceeecccCccccccCccccccccccceeccCCc-EEEEECCC-CCCCCCCCCeeEEEEEc
Confidence 99999999999999999998888766555444455556667778999999999 99999998 89988765589999999
Q ss_pred cCcccccccCCcccchHhh-hCC
Q 048242 409 GNMVMKGYLKNPKANEEAF-ANG 430 (430)
Q Consensus 409 g~~v~~gY~~~~~~t~~~f-~dg 430 (430)
|++++.|||++++.|.+.| .||
T Consensus 383 g~~v~~gY~~~~~~t~~~~~~dg 405 (534)
T d1v25a_ 383 GPWITGGYYGNEEATRSALTPDG 405 (534)
T ss_dssp STTSBSSCBTCHHHHHTTBCTTS
T ss_pred CCcccceecCChhhhhhhcccCC
Confidence 9999999999999999988 444
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=4.9e-55 Score=438.38 Aligned_cols=381 Identities=18% Similarity=0.219 Sum_probs=305.2
Q ss_pred HHHHHHHHhhCCCcceEEECC------eeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 23 LWFLERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 23 ~~~l~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
.+.++++++.+||++|+++.+ +++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 75 ~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav 154 (643)
T d1pg4a_ 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 154 (643)
T ss_dssp HHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeE
Confidence 356778888899999999632 68999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEecccc---------HHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccc
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQY---------FALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYA 167 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (430)
++|++|.++++++.+++++++++++|+++.. ........... .......++.+.........
T Consensus 155 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~i~~~~~~~~~~~---- 225 (643)
T d1pg4a_ 155 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP-----NVTSVEHVIVLKRTGSDIDW---- 225 (643)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTST-----TCCSCCEEEEECSSCCCCCC----
T ss_pred EEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhcc-----ccccceEEEEeccCCccccc----
Confidence 9999999999999999999999999997642 12222222111 12245667776654322110
Q ss_pred ccCCccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHH-HHHhhcCCCCCCEEEeccCch
Q 048242 168 LSKGVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSL-NVVLTWGMKEGAVYLWTLPIF 246 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~~~~~pl~ 246 (430)
.......+.+......+.. ......++++++|+|||||||+||||+++|.+++.... .....++++.+|++++..|++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~-~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~ 304 (643)
T d1pg4a_ 226 QEGRDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVG 304 (643)
T ss_dssp CBTTEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred ccccchhhhhhhcccCccc-CCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChH
Confidence 1111223333333333322 22445789999999999999999999999999765544 445567899999999999999
Q ss_pred hhhhhHH-HHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecC
Q 048242 247 HGNGWCF-TWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGG 319 (430)
Q Consensus 247 h~~gl~~-~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G 319 (430)
|++|+.. ++.+++.|+++++++. +++..+++.++++++|+++++|++++.+++.... ...+ +++||.++++|
T Consensus 305 ~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~d-l~sLr~i~~~G 383 (643)
T d1pg4a_ 305 WVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILGSVG 383 (643)
T ss_dssp SHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEEEES
T ss_pred HHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccC-CCceEEEEEEe
Confidence 9999875 6678899999999853 4889999999999999999999999999876432 3445 89999999999
Q ss_pred CCCCHHHHHHHH-hc---CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCC
Q 048242 320 SPPPPPILLAMS-QK---GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPI 395 (430)
Q Consensus 320 ~~l~~~~~~~~~-~~---~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~ 395 (430)
+++++++.+++. .+ ++++++.||+||++++++...... ...+.+++|+|++|+ +++|+|++ |+++
T Consensus 384 ~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~---------~~~~~gs~G~p~~g~-~v~ivd~~-g~~~ 452 (643)
T d1pg4a_ 384 EPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDNE-GHPQ 452 (643)
T ss_dssp SCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECTT-CCBC
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCc---------cCCCCCccccccCCC-EEEEECCC-CCCC
Confidence 999999999997 55 578999999999987766543221 123458999999999 99999998 9999
Q ss_pred CCCCCceeEEEEec--CcccccccCCcccchHhh
Q 048242 396 PADGKTIGEVVMRG--NMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 396 ~~~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~f 427 (430)
+.+ +.|||+|+| |+++.|||++++.+.+.+
T Consensus 453 ~~g--~~Gel~v~~~~p~~~~~~~~~~~~~~~~~ 484 (643)
T d1pg4a_ 453 EGA--TEGNLVITDSWPGQARTLFGDHERFEQTY 484 (643)
T ss_dssp CSS--EEEEEEECSCCTTCCCEETTCHHHHHHHH
T ss_pred CCC--ceEEEEEecCCCcccccccCChhhchhhh
Confidence 988 899999999 578999999999887765
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=2.7e-53 Score=419.76 Aligned_cols=383 Identities=18% Similarity=0.230 Sum_probs=319.0
Q ss_pred CCCCCCCHHHHHHHHHhhC---CCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHH
Q 048242 15 ANFTALTPLWFLERAATVH---PTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFG 89 (430)
Q Consensus 15 ~~~~~~t~~~~l~~~~~~~---p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 89 (430)
.+.+..|+.++|.+.+++| |+++|+++. ++++||+||.+++.++|+.|.++|+++||+|+|+++|++++++++||
T Consensus 12 ~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA 91 (541)
T d1lcia_ 12 YPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLG 91 (541)
T ss_dssp SCCCSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 3444578999999999888 777788875 47899999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCccccccc
Q 048242 90 VPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALS 169 (430)
Q Consensus 90 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (430)
|+++|++++|+++.++.+++.++++.++++++|++.+..+.+.++....+ ....++.++.... .
T Consensus 92 ~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~ 155 (541)
T d1lcia_ 92 ALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-------IIQKIIIMDSKTD---------Y 155 (541)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT-------TCCEEEETTCSSC---------B
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcccccc-------ccceeeeecCCcc---------c
Confidence 99999999999999999999999999999999999999888888777666 5667777665421 1
Q ss_pred CCccchhhhhhc----C--CCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhc---CCCCCCEEE
Q 048242 170 KGVTEYEKLLET----G--DPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTW---GMKEGAVYL 240 (430)
Q Consensus 170 ~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~ 240 (430)
.+...+.+.... . ..+........++++++|+|||||||.||+|+++|+++.....+..... .+..+++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 235 (541)
T d1lcia_ 156 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAIL 235 (541)
T ss_dssp TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEE
T ss_pred cccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccc
Confidence 222233332221 1 1112222344578899999999999999999999999987766665543 567899999
Q ss_pred eccCchhhhhhHHHHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCC
Q 048242 241 WTLPIFHGNGWCFTWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGS 320 (430)
Q Consensus 241 ~~~pl~h~~gl~~~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~ 320 (430)
+.+|++|..++...+..+..++..+.....+.......+.++++|.++++|.++..+.........+ +++||.+++||+
T Consensus 236 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~-~~~l~~v~~gG~ 314 (541)
T d1lcia_ 236 SVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-LSNLHEIASGGA 314 (541)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSC-CTTCCEEECTTC
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccc-cccceEEEeccc
Confidence 9999999999999888888999999888899999999999999999999999999999888777777 899999999999
Q ss_pred CCCHHHHHHHH-hcC-cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCC
Q 048242 321 PPPPPILLAMS-QKG-FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPAD 398 (430)
Q Consensus 321 ~l~~~~~~~~~-~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~ 398 (430)
++++...+++. .++ ..+++.||+||+++.++.+...+ ...+++|+|++++ +++|+|+|++++++.|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-----------~~~~svG~p~~~~-~~~i~d~d~~~~~~~g 382 (541)
T d1lcia_ 315 PLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGD-----------DKPGAVGKVVPFF-EAKVVDLDTGKTLGVN 382 (541)
T ss_dssp CCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC--------------CCCCBEECTTC-EEEEECTTTCCBCCTT
T ss_pred ccccccccccccccCCceeeecCCccccCceEEecCccc-----------CCCCccccccCCC-EEEEEECCCCcCCCCC
Confidence 99999999998 555 56899999999998887754332 2457899999999 9999999989999998
Q ss_pred CCceeEEEEecCcccccccCCcccchHhhh
Q 048242 399 GKTIGEVVMRGNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 399 ~~~~Gel~v~g~~v~~gY~~~~~~t~~~f~ 428 (430)
++|||+|+|++++.|||++++.+...|.
T Consensus 383 --~~Gel~v~g~~~~~gY~~~~~~~~~~~~ 410 (541)
T d1lcia_ 383 --QRGELCVRGPMIMSGYVNNPEATNALID 410 (541)
T ss_dssp --CCEEEEEESTTSCSEETTBHHHHHHHBC
T ss_pred --CeEEEEEccCccCCeeCCChhhhhhccc
Confidence 8999999999999999999998887763
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.2e-52 Score=416.26 Aligned_cols=387 Identities=16% Similarity=0.183 Sum_probs=298.6
Q ss_pred HHHHHHHHhhCCCcceEEECC------eeeeHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC
Q 048242 23 LWFLERAATVHPTRKSVVYES------KHYTWQQTYQRCRRLASALS-QLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA 95 (430)
Q Consensus 23 ~~~l~~~~~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 95 (430)
.+.|+++++++|+++|+++.+ +++||+||.++++++|+.|. ++|+++||+|+++++|++++++++|||+++|+
T Consensus 62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Ga 141 (640)
T d1ry2a_ 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 141 (640)
T ss_dssp HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCce
Confidence 678899999999999999732 78999999999999999997 67999999999999999999999999999999
Q ss_pred eeeeccccCChhhHHHHHhhcCceEEEeccccHHH-----HHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccC
Q 048242 96 VLNCINFRLNPLNVAIILGHAEAALVFVDQQYFAL-----AEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSK 170 (430)
Q Consensus 96 ~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (430)
+++|++|.++++++.++++++++++++++...... .......... ..........+......... ....
T Consensus 142 v~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~ 215 (640)
T d1ry2a_ 142 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR---ETPGVRHVLVYRKTNNPSVA---FHAP 215 (640)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT---SCTTCCEEEEECSSCCSSCC---CCSS
T ss_pred EeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhh---hhcccceeeeeccccccccc---cccc
Confidence 99999999999999999999999999997643210 1111111110 01133334443332211110 0001
Q ss_pred CccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHH-HHhhcCCCCCCEEEeccCchhhh
Q 048242 171 GVTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLN-VVLTWGMKEGAVYLWTLPIFHGN 249 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~pl~h~~ 249 (430)
....+....... .......+..++++++|+|||||||.||||+++|.+++..... ....+.+..+|++++.+|++|++
T Consensus 216 ~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~ 294 (640)
T d1ry2a_ 216 RDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWIT 294 (640)
T ss_dssp SEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHH
T ss_pred cccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhh
Confidence 111122222222 2222224456789999999999999999999999998766544 44466889999999999999999
Q ss_pred hhH-HHHHHHhhcceEEEeCC----CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCC--CCCCCCCceeEEeecCCCC
Q 048242 250 GWC-FTWSLAALCGTSVMLRQ----ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPE--DTILPLPHVVNVNTGGSPP 322 (430)
Q Consensus 250 gl~-~~~~~l~~g~~~v~~~~----~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~l~~lr~v~~~G~~l 322 (430)
|+. .++.++..|+++++++. +++..+++.++++++|+++++|++++.+.+.... ...+ +++||.+++||+++
T Consensus 295 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~v~~gG~~l 373 (640)
T d1ry2a_ 295 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCLGSVGEPI 373 (640)
T ss_dssp HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEEEECSSCC
T ss_pred hHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCC-CCceEEEEEecccC
Confidence 976 46678889999998864 3889999999999999999999999999876533 3345 89999999999999
Q ss_pred CHHHHHHHH-hcC---cEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCC
Q 048242 323 PPPILLAMS-QKG---FRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPAD 398 (430)
Q Consensus 323 ~~~~~~~~~-~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~ 398 (430)
++++.++++ .++ +.+++.||+||++..+........ ...+.+++|+|++++ +++|+|+++++.++..
T Consensus 374 ~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~--------~~~~~gs~G~p~~g~-~~~i~d~~~~~~~~~~ 444 (640)
T d1ry2a_ 374 AAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV--------TPMKPGSASFPFFGI-DAVVLDPNTGEELNTS 444 (640)
T ss_dssp CHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC--------CCCCTTCCCEECTTC-CEEEECSSSTTCEECS
T ss_pred cHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCc--------CCCCCcccccccCCc-eEEEEeCCCCcccCCC
Confidence 999999998 553 679999999999876655433321 123458999999999 9999999866665543
Q ss_pred CCceeEEEEec--CcccccccCCcccchHhh
Q 048242 399 GKTIGEVVMRG--NMVMKGYLKNPKANEEAF 427 (430)
Q Consensus 399 ~~~~Gel~v~g--~~v~~gY~~~~~~t~~~f 427 (430)
. ..|||+++| |+++.|||+|++++.+.|
T Consensus 445 ~-~~Gel~i~~~~p~~~~gy~~~~e~t~~~~ 474 (640)
T d1ry2a_ 445 H-AEGVLAVKAAWPSFARTIWKNHDRYLDTY 474 (640)
T ss_dssp S-CEEEEEESSCCTTSCCEETTCHHHHHHHH
T ss_pred C-ceEEEEEEecCCCcccccccCHHHHHhhh
Confidence 2 679999998 689999999999999887
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.6e-49 Score=390.05 Aligned_cols=360 Identities=16% Similarity=0.189 Sum_probs=298.6
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
....||.++|+++++++|+++|+++.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 20 ~~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v 99 (514)
T d1amua_ 20 PRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGA 99 (514)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchh
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYE 176 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
++|++|.++++++.++++.++++++|++......+.... ............
T Consensus 100 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-----------~~~~~~~~~~~~------------------ 150 (514)
T d1amua_ 100 YVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----------FNGQVEIFEEDT------------------ 150 (514)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----------CCSEEEECCCST------------------
T ss_pred EEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhc-----------cccccccccccc------------------
Confidence 999999999999999999999999999987765433210 111111111111
Q ss_pred hhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhhHHHHH
Q 048242 177 KLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGWCFTWS 256 (430)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl~~~~~ 256 (430)
...........+..++++++|+|||||||.||+|+++|.++..........+....++++++..|++|..++...+.
T Consensus 151 ---~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 227 (514)
T d1amua_ 151 ---IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFM 227 (514)
T ss_dssp ---TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred ---ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccc
Confidence 01111112223456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcceEEEeCC---CCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHHHHhc
Q 048242 257 LAALCGTSVMLRQ---ASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLAMSQK 333 (430)
Q Consensus 257 ~l~~g~~~v~~~~---~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~ 333 (430)
++..|+++++... .+....++.+..+.++.+..+|...... ...+ +++++.++++|+++++++.+++.+
T Consensus 228 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~l~~~~~~G~~~~~~~~~~~~~- 299 (514)
T d1amua_ 228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPER-ILSIQTLITAGSATSPSLVNKWKE- 299 (514)
T ss_dssp HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTT-CCSCSEEEEESSCCCHHHHHHHTT-
T ss_pred cccccccccccccccccchhhhhhhhhhhhcccccceeeecccc------cccc-cccccEEEEecccCCHHHhhhhcc-
Confidence 9999999988753 5678889999999999999998765432 2233 889999999999999999887765
Q ss_pred CcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecCccc
Q 048242 334 GFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGNMVM 413 (430)
Q Consensus 334 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~~v~ 413 (430)
++.+++.||+||++++++........ ....++.|.+.++. ++.+.|++ +++++.| +.|||+|+|++++
T Consensus 300 ~~~~~~~yG~tE~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~v~~~d~~-~~~~~~g--~~GEl~v~~~~~~ 367 (514)
T d1amua_ 300 KVTYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLA 367 (514)
T ss_dssp TSEEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCC
T ss_pred ceeEEEeeccccCceeeeeccccccc--------cCcccccccceeee-eEeeeccc-ceecCCC--CeeEEEEccCccc
Confidence 68999999999998887765543221 12346788999999 89999988 9999999 8999999999999
Q ss_pred ccccCCcccchHhhh
Q 048242 414 KGYLKNPKANEEAFA 428 (430)
Q Consensus 414 ~gY~~~~~~t~~~f~ 428 (430)
+|||++++.+.+.|.
T Consensus 368 ~gY~~~~~~~~~~~~ 382 (514)
T d1amua_ 368 RGYWKRPELTSQKFV 382 (514)
T ss_dssp CEETTCHHHHHHHEE
T ss_pred ccccccccccceeeE
Confidence 999999999988873
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=9.1e-49 Score=386.63 Aligned_cols=375 Identities=19% Similarity=0.202 Sum_probs=306.5
Q ss_pred CCCCCHHHHHHHHHhhCCCcceEEECCeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCe
Q 048242 17 FTALTPLWFLERAATVHPTRKSVVYESKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAV 96 (430)
Q Consensus 17 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 96 (430)
|...|+.++|+++++++||++|+++.++++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i 101 (536)
T d1mdba_ 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (536)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChhhHHHHHhhcCceEEEeccccHH-----HHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCC
Q 048242 97 LNCINFRLNPLNVAIILGHAEAALVFVDQQYFA-----LAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKG 171 (430)
Q Consensus 97 ~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (430)
++|++|.++.+++.++++.++++++++++.... .......... .....+...... .
T Consensus 102 ~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------~ 162 (536)
T d1mdba_ 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAE------------E 162 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCT------------T
T ss_pred EEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccc-------cccceeeeeccc------------c
Confidence 999999999999999999999999999764322 1112222211 222222222211 1
Q ss_pred ccchhhhhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcCCCCCCEEEeccCchhhhhh
Q 048242 172 VTEYEKLLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWGMKEGAVYLWTLPIFHGNGW 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~h~~gl 251 (430)
...+.+. ...........++|+++|+|||||||.||+|++||.++...+......+++..++++++..|++|.+++
T Consensus 163 ~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l 238 (536)
T d1mdba_ 163 FLPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (536)
T ss_dssp SEEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred ccchhhc----ccCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccce
Confidence 1122221 112222235678899999999999999999999999999999999999999999999999999999997
Q ss_pred HH--HHHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCCCCCCCCCCCceeEEeecCCCCCHHHHHH
Q 048242 252 CF--TWSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAPPEDTILPLPHVVNVNTGGSPPPPPILLA 329 (430)
Q Consensus 252 ~~--~~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 329 (430)
.. ....+..|.+.+..+.+++..++..+.+++++.+..+|..+..+.......... +++++.+++||+++++...++
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~~~~~~~~ 317 (536)
T d1mdba_ 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARR 317 (536)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTT
T ss_pred eeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccc-cCcceeEEEeccccccccccc
Confidence 63 333344467777777899999999999999999999999999988876666666 899999999999999999999
Q ss_pred HH-hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEe
Q 048242 330 MS-QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMR 408 (430)
Q Consensus 330 ~~-~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~ 408 (430)
+. .++......|+.+|.+..+..... ......+++|+|+++. ...+++.++++.++.+ +.|||+++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~p~~~~-~~~~v~~~~g~~~~~~--~~Gel~v~ 384 (536)
T d1mdba_ 318 VKAVFGCTLQQVFGMAEGLVNYTRLDD----------PEEIIVNTQGKPMSPY-DESRVWDDHDRDVKPG--ETGHLLTR 384 (536)
T ss_dssp HHHHTCSEEEEEEECTTSCEEECCTTS----------CHHHHHHCCCEESSTT-CEEEEECTTSCBCCTT--CCEEEEEE
T ss_pred hhhccCceeeecccccccccccccccc----------ccccccCCcccCCCCc-ceEEEEcCCCCeeccc--ccceeecC
Confidence 98 669999999999987655443321 1234568899999877 5555555559999998 89999999
Q ss_pred cCcccccccCCcccchHhhh
Q 048242 409 GNMVMKGYLKNPKANEEAFA 428 (430)
Q Consensus 409 g~~v~~gY~~~~~~t~~~f~ 428 (430)
|++++.||+++++.+...|.
T Consensus 385 g~~~~~gY~~~~~~~~~~~~ 404 (536)
T d1mdba_ 385 GPYTIRGYYKAEEHNAASFT 404 (536)
T ss_dssp CTTSCSSCTTCHHHHHHHBC
T ss_pred CCcccccccccccccccccc
Confidence 99999999999999888874
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.2e-42 Score=339.37 Aligned_cols=369 Identities=21% Similarity=0.260 Sum_probs=290.8
Q ss_pred CCHHHHHHHHHhhCCCcceEEEC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCee
Q 048242 20 LTPLWFLERAATVHPTRKSVVYE--SKHYTWQQTYQRCRRLASALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVL 97 (430)
Q Consensus 20 ~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 97 (430)
.|+.++|+++++++|+++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 68999999999999999999985 4699999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChhhHHHHHhhcCceEEEeccccHHHHHHHHHHhhccCCCCCCCCeEEEecCCCCCCCcccccccCCccchhh
Q 048242 98 NCINFRLNPLNVAIILGHAEAALVFVDQQYFALAEEALKIMEGKSEGLFKPPVLIVIGDETCDRAPLEYALSKGVTEYEK 177 (430)
Q Consensus 98 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+|++|.++++++.++++.++++++|++..... ...... .. ....++.+++......
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~-~~-------~~~~~i~~~~~~~~~~--------------- 137 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQ-SG-------SGARIIFLGDLVRDGE--------------- 137 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHH-TT-------CCCEEEEHHHHEETTE---------------
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhh-hc-------cccccccchhhhhhhc---------------
Confidence 99999999999999999999999999875322 111111 11 3445555443211000
Q ss_pred hhhcCCCCCCCCCCCCCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHhhcC--CCCCCEEEeccCchhhhhhH-HH
Q 048242 178 LLETGDPEFAWKPPRDEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVLTWG--MKEGAVYLWTLPIFHGNGWC-FT 254 (430)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~pl~h~~gl~-~~ 254 (430)
..............++++++++|||||||.||+|+++|.++...+......+. ....++++..+|++|..+.. ..
T Consensus 138 --~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 215 (503)
T d3cw9a1 138 --PYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVL 215 (503)
T ss_dssp --ECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTH
T ss_pred --ccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccc
Confidence 00011111223457889999999999999999999999999888887776653 45678999999998887766 45
Q ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHhhCceEEeeccHHHHHHHcCC--CCCCCCCCCceeEEeecCCCCCHHHHHHHH-
Q 048242 255 WSLAALCGTSVMLRQASAKAIYKAIAEHGVTNFCAAPIVLNSIVNAP--PEDTILPLPHVVNVNTGGSPPPPPILLAMS- 331 (430)
Q Consensus 255 ~~~l~~g~~~v~~~~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~~~--~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~- 331 (430)
+.+...++.+++.+.+++..+...+.++++++++.+|..+..+.... ...... +++||.+++||+++++++.+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Lr~i~~gG~~~~~~~~~~~~~ 294 (503)
T d3cw9a1 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAVLETVHQ 294 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCC-CTTCCEEEECSSCCCHHHHHHHHH
T ss_pred ccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccccc-ccceEEEEeccccccccccccccc
Confidence 66667788888888999999999999999999999999988776532 122333 78999999999999999999998
Q ss_pred hcCcEEEeeecCccccccccccccCCCCCCCChhhhhhhccccCCccccccceEEeeCCCCCCCCCCCCceeEEEEecC-
Q 048242 332 QKGFRVTHVYGLSEINGPATVCAWNPNWDSLPFEAQARLNARQGVKCMCLEGLDVLDTKTNQPIPADGKTIGEVVMRGN- 410 (430)
Q Consensus 332 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~v~d~~~~~~~~~~~~~~Gel~v~g~- 410 (430)
.++..+.+.||++|++..+....... ....+.+.+.+.. ...+.+.. ++.++.| +.|++.+.+.
T Consensus 295 ~~~~~~~~~yg~~e~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~-~~~~~~g--~~g~~~~~~~~ 359 (503)
T d3cw9a1 295 HLPGEKVNIYGTTEAMNSLYMRQPKT-----------GTEMAPGFFSEVR-IVRIGGGV-DEIVANG--EEGELIVAASD 359 (503)
T ss_dssp HCCSEEEEEEEETTTEEEEEEESCSS-----------SSEEBCCTTCCEE-EECTTSCT-TCBCCTT--CCEEEEEECCT
T ss_pred cccccccccccccccceeeeeccccc-----------cccccccccccce-eeeeeccc-CcccCCC--ccccccccccc
Confidence 66889999999999987766654332 1224445555554 34444444 8888888 8898877765
Q ss_pred cccccccCCcccchHhhhCC
Q 048242 411 MVMKGYLKNPKANEEAFANG 430 (430)
Q Consensus 411 ~v~~gY~~~~~~t~~~f~dg 430 (430)
....||+++++.|.++|.||
T Consensus 360 ~~~~~~~~~~~~t~~~~~~g 379 (503)
T d3cw9a1 360 SAFVGYLNQPQATAEKLQDG 379 (503)
T ss_dssp TSCCCBTTCHHHHHHHEETT
T ss_pred cccccccCChhhhHHHhcCC
Confidence 66678999999999998765
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=91.28 E-value=0.38 Score=44.16 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=74.6
Q ss_pred EEechHHHHHHHHHHH---hhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-CCCHHHHHHHHHhhCceEEe
Q 048242 213 VLVSHRAAYLMSLNVV---LTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR-QASAKAIYKAIAEHGVTNFC 288 (430)
Q Consensus 213 v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~-~~~~~~~~~~l~~~~vt~~~ 288 (430)
..+|++.+...+..+. ...+++++|++...++... -.+...++++..|+..+.+. ..+..++...+++.++.+++
T Consensus 46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~-e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi 124 (541)
T d1lcia_ 46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 124 (541)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS-STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEe
Confidence 4689998876665444 3457899999888887642 33456677778888888774 57889999999999999999
Q ss_pred eccHHHHHHHcCCCCCCCCCCCceeEEeecCC
Q 048242 289 AAPIVLNSIVNAPPEDTILPLPHVVNVNTGGS 320 (430)
Q Consensus 289 ~~p~~l~~l~~~~~~~~~~~l~~lr~v~~~G~ 320 (430)
.....+..+...... ++.++.+++...
T Consensus 125 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 151 (541)
T d1lcia_ 125 VSKKGLQKILNVQKK-----LPIIQKIIIMDS 151 (541)
T ss_dssp ECGGGHHHHHHHHHH-----CTTCCEEEETTC
T ss_pred eeccccccchhcccc-----ccccceeeeecC
Confidence 999888777654322 455666665443
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=85.23 E-value=5.1 Score=36.06 Aligned_cols=101 Identities=9% Similarity=-0.037 Sum_probs=73.2
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.|+.+|++...+|. .-.+|...+...+..+.. ..+++++|++...++.... .+...++++..|+..+.++
T Consensus 24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~ 97 (534)
T d1v25a_ 24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTANP 97 (534)
T ss_dssp STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHH-HHHHHHHHHHhCcEEEecCC
Confidence 45567766555432 345899988766655444 4578999999888886433 3446777788898888885
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHHHHHHc
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVLNSIVN 299 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~ 299 (430)
..+..++...+++.++..++........+..
T Consensus 98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 98 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred CCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 4788999999999999999988776666543
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=84.75 E-value=4.4 Score=36.24 Aligned_cols=97 Identities=6% Similarity=-0.035 Sum_probs=73.7
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.|+.+|++.- +-.+|...|...+..+.. ..+++++|++...++....+ +...++++..|+..+.+.
T Consensus 36 ~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~-v~~~la~~~~G~v~v~l~~ 105 (514)
T d1amua_ 36 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 105 (514)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEeCC
Confidence 5667777641 136899988766665543 45899999998888875433 446677778888888874
Q ss_pred CCCHHHHHHHHHhhCceEEeeccHHHHHHHc
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPIVLNSIVN 299 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~~l~~l~~ 299 (430)
.....++...+++.++..++..+.....+..
T Consensus 106 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~ 136 (514)
T d1amua_ 106 EYPKERIQYILDDSQARMLLTQKHLVHLIHN 136 (514)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred CCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence 5788999999999999999999888877654
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=83.25 E-value=5.3 Score=37.23 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=68.8
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHHh---hcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVVL---TWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.++.+|+|.... .++ ....+|++.|...+..+.. ..+++++|++...+|...- .+...++++..|+..+.+.
T Consensus 85 ~~d~~Ali~~~~-~~~--~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e-~iv~~lA~~~~Gav~v~l~~ 160 (643)
T d1pg4a_ 85 NGDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIFG 160 (643)
T ss_dssp HTTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEec-CCC--CceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchH-HHHHHHHHHHhCeEEEecCC
Confidence 356677765432 222 2446899988666554443 4589999999999987443 3556777788898888774
Q ss_pred CCCHHHHHHHHHhhCceEEeecc
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAP 291 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p 291 (430)
.+.+..+...+.+.++.++++.+
T Consensus 161 ~~~~~~l~~~l~~~~~~~li~~~ 183 (643)
T d1pg4a_ 161 GFSPEAVAGCIIDSSSRLVITAD 183 (643)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcc
Confidence 68999999999999999988643
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=81.71 E-value=4.1 Score=36.09 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=65.8
Q ss_pred CCCCeeEEEeCCCCCCCCceEEechHHHHHHHHHHH---hhcCCCCCCEEEeccCchhhhhhHHHHHHHhhcceEEEeC-
Q 048242 193 DEWQSIALGYTSGTTANPKGVLVSHRAAYLMSLNVV---LTWGMKEGAVYLWTLPIFHGNGWCFTWSLAALCGTSVMLR- 268 (430)
Q Consensus 193 ~~~~~~~i~~TSGttG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~pl~h~~gl~~~~~~l~~g~~~v~~~- 268 (430)
.|+.+|++.-.+| ..+|.+.+...+..+. ...+++++|++...++... -.+...++++..|+..+.++
T Consensus 15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpi~~ 86 (503)
T d3cw9a1 15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA-DVVIAILALHRLGAVPALLNP 86 (503)
T ss_dssp STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH-HHHHHHHHHHHhCcEEEEeCC
Confidence 4566777654433 3589998866555444 3457899999888887533 33446777778898888885
Q ss_pred CCCHHHHHHHHHhhCceEEeeccH
Q 048242 269 QASAKAIYKAIAEHGVTNFCAAPI 292 (430)
Q Consensus 269 ~~~~~~~~~~l~~~~vt~~~~~p~ 292 (430)
...+..+...+++.++..++....
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 87 RLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp TSCHHHHHHHHHHTTCSEEEESSC
T ss_pred CCCHHHHHHHHHhcCCcEEEeecc
Confidence 578899999999999999876543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=80.31 E-value=3.2 Score=31.04 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=40.7
Q ss_pred HHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCCeeeeccccCChhhHHHHHhhcCceEEEecc
Q 048242 62 LSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGAVLNCINFRLNPLNVAIILGHAEAALVFVDQ 125 (430)
Q Consensus 62 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (430)
+.+.++++||+|+|+..-..-.+++++| ...|+.++.++++ ++-.++.++.++...+...
T Consensus 19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~---~~r~~~a~~~ga~~~~~~~ 78 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARS---PRRLEVAKNCGADVTLVVD 78 (170)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESC---HHHHHHHHHTTCSEEEECC
T ss_pred HHHhCCCCCCEEEEEcccccchhhHhhH-hhhcccccccchH---HHHHHHHHHcCCcEEEecc
Confidence 4556999999999987545555655555 5578887777544 3345566777887766543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.03 E-value=6.8 Score=29.09 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=47.8
Q ss_pred eHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEcCCchhHHHHHHHhhhcCC-eeeeccccCChhhHHHHHhhcCceEEE
Q 048242 47 TWQQTYQRCRRLA---SALSQLSIGPGTAVSVLSPNVPAMYEVHFGVPMTGA-VLNCINFRLNPLNVAIILGHAEAALVF 122 (430)
Q Consensus 47 Ty~el~~~~~~la---~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~~~l~~~~~~~~l~~~l~~~~~~~vi 122 (430)
||.|.. .++-+| +.+.+.++++||.|+|+..-+.-..++++|.. .|+ .++.++++ +....+.++.+++.++
T Consensus 2 S~e~Aa-l~epla~a~~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~-~G~~~Vi~~d~~---~~rl~~a~~~Ga~~~~ 76 (171)
T d1pl8a2 2 TFEEGA-LIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKA-MGAAQVVVTDLS---ATRLSKAKEIGADLVL 76 (171)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESC---HHHHHHHHHTTCSEEE
T ss_pred CHHHHH-HHHHHHHHHHHHHHhCCCCCCEEEEECCCccHHHHHHHHHH-cCCceEEeccCC---HHHHHHHHHhCCcccc
Confidence 554433 333343 44556699999999999876666666666654 687 45555543 3344467888998877
Q ss_pred ecc
Q 048242 123 VDQ 125 (430)
Q Consensus 123 ~~~ 125 (430)
...
T Consensus 77 ~~~ 79 (171)
T d1pl8a2 77 QIS 79 (171)
T ss_dssp ECS
T ss_pred ccc
Confidence 755
|