Citrus Sinensis ID: 048258
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LSQ2 | 659 | Putative pentatricopeptid | yes | no | 0.869 | 0.664 | 0.596 | 1e-167 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.960 | 0.528 | 0.286 | 7e-64 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.968 | 0.775 | 0.277 | 1e-61 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.968 | 0.794 | 0.265 | 9e-60 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.813 | 0.648 | 0.267 | 2e-59 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.972 | 0.777 | 0.260 | 4e-59 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.974 | 0.657 | 0.278 | 1e-58 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.948 | 0.758 | 0.271 | 2e-58 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.960 | 0.809 | 0.254 | 1e-57 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.918 | 0.614 | 0.266 | 1e-57 |
| >sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/473 (59%), Positives = 356/473 (75%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
ISFLG+ PSTRLYNAVIDALVKSNS+DLAYLKFQQM D CKPDRFTYNILIHG+C+ GV
Sbjct: 171 ISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGV 230
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
VDEA+RLVKQME G PNV+TYTILIDGF A RV E + LE+M+ R + PNEAT+R+
Sbjct: 231 VDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRT 290
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180
VHG+FRCL P KAFE+L+ FME++ Q++ + +LY LSNNSMA E LRK+G+RG
Sbjct: 291 FVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERG 350
Query: 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240
Y+P+SSTF+ ++CL+ G DL ETC I D F+ RGVKP F+ YL+L++AL A R EGD
Sbjct: 351 YIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGD 410
Query: 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300
RYL + D L+S+V SYN VIDC CK ++ A EM+DR I+PNLVTFNT +SG+
Sbjct: 411 RYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGY 470
Query: 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
+V K +L LL GFKPD TF+ +I+CLCRA +DA DC EM+EWG+ PN
Sbjct: 471 SVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNE 530
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420
ITYNILIRS C+ GD RS++LF KM+ + +SPD+Y +NA IQSFC+M K++KAE+ +
Sbjct: 531 ITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKT 590
Query: 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILE 473
ML +GL+PDNF+YS LIKAL +SGR EA++ F S+E++GC PDSYT L+ E
Sbjct: 591 MLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEE 643
|
Required for the ubiqinol-cytochrome c oxidoreductase activity of mitochondrial Complex III. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 139/485 (28%), Positives = 245/485 (50%), Gaps = 1/485 (0%)
Query: 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQME 72
YN ++++L + +D + +M D+ P+ +TYN +++G C++G V+EA + V ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 73 GLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH 132
G P+ +TYT LI G+C K + F+V M + NE L+HG+
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 133 KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTV 192
+A +L ++ + E L+ L + SEA ++++M + G P T+ +
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 193 TCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV 252
L + + +L +++G+ P TY L+ K G + + + +L
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425
Query: 253 SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTREL 312
N +YN +I +CK N+ +A + +M +R + P++VT+N+LI G C+ L
Sbjct: 426 PNTRTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484
Query: 313 LVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA 372
L ++ + G PD++T+ SMID LC++ R E+A D + + GV PN + Y LI C
Sbjct: 485 LSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCK 544
Query: 373 IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS 432
G V + + +KM + P+ TFNALI C K+++A M+ +GL+P +
Sbjct: 545 AGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVST 604
Query: 433 YSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSK 492
+ LI L+K G FD A F M +G PD++T ++T ++GR +A D++ +
Sbjct: 605 DTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR 664
Query: 493 ERGIS 497
E G+S
Sbjct: 665 ENGVS 669
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/523 (27%), Positives = 260/523 (49%), Gaps = 35/523 (6%)
Query: 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRL 67
PS +N ++ A+ K N DL ++M + D ++YNILI+ CR + AL +
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 68 VKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127
+ +M LGY P++ T + L++G+C+ KR++E +++ M PN T +L+HG+F
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197
Query: 128 CLDPHKAFELLIRFMER--EP--LTQKLVCNTLLYR------------------------ 159
+A L+ R + R +P T V N L R
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257
Query: 160 -------LSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFI 212
L N ++A + +M ++G P T++ + CL ++ +L I
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317
Query: 213 KRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD 272
+R + P T+ L++A K G+ VE ++ + + K + ++ +Y+ +I+ FC + +D
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377
Query: 273 RATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332
A + M +D PN+VT+NTLI G CK V + EL + + G + T+N++I
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437
Query: 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRIS 392
L +A + A +MV GVPP+ ITY+IL+ LC G + ++L +F+ +Q ++
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497
Query: 393 PDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQT 452
PDIYT+N +I+ C+ K+E F S+ G++P+ Y+ +I + G +EA
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 557
Query: 453 FLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495
F M+++G P+S T N ++ ++ G + +++K + G
Sbjct: 558 FREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/489 (26%), Positives = 251/489 (51%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
+ LG+S + YN +I+ L + + + A +M P T N L++G C
Sbjct: 91 MEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNR 150
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
+ EA+ LV QM +GY P+ T+T L+ G + +E ++E M + P+ T +
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 210
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180
+++G+ + +P A LL + + + ++ +T++ L +A + +M ++G
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270
Query: 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240
P+ T+ ++CL ++ +L ++R + P T+ L++A K G+ +E +
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330
Query: 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300
+ + + + + N+ +YN +I+ FC + +D A +I M +D P++VT+NTLI+G
Sbjct: 331 KLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGF 390
Query: 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
CK +V EL + G + T+ ++I +A ++A +MV GV PN
Sbjct: 391 CKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNI 450
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420
+TYN L+ LC G + +++ +F+ +Q ++ PDIYT+N + + C+ K+E F S
Sbjct: 451 MTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCS 510
Query: 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGR 480
+ G++PD +Y+ +I K G +EA F+ M+++G PDS T N ++ ++ G
Sbjct: 511 LSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGD 570
Query: 481 FEEAHDIVK 489
+ +++K
Sbjct: 571 KAASAELIK 579
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/494 (26%), Positives = 254/494 (51%)
Query: 4 LGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63
LGIS Y+ I+ + + + LA +M +PD T + L++G C + +
Sbjct: 112 LGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISD 171
Query: 64 ALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
A+ LV QM +GY P+ +T+T LI G + +E +++ M +R P+ T ++V+
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231
Query: 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP 183
G+ + D A LL + + + ++ NT++ L +A + +M ++G P
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP 291
Query: 184 ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYL 243
+ T+ ++CL ++ +L I+R + P T+ L++A K G+ VE ++
Sbjct: 292 DVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 351
Query: 244 NHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD 303
+ + K + ++ +Y+ +I+ FC + +D A + M +D PN+VT++TLI G CK
Sbjct: 352 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKA 411
Query: 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363
V + EL + + G + T+ ++I +A ++A +MV GV PN +TY
Sbjct: 412 KRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 471
Query: 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423
NIL+ LC G +A+++ +F+ +Q + PDIYT+N +I+ C+ K+E + F ++
Sbjct: 472 NILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSL 531
Query: 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEE 483
G+ P+ +Y+ +I + G +EA M+++G P+S T N ++ ++ G E
Sbjct: 532 KGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREA 591
Query: 484 AHDIVKTSKERGIS 497
+ +++K + G +
Sbjct: 592 SAELIKEMRSCGFA 605
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/525 (26%), Positives = 259/525 (49%), Gaps = 35/525 (6%)
Query: 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRL 67
PS ++ ++ A+ K N D+ +QM + +TY+ILI+ CR + AL +
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 68 VKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF- 126
+ +M LGY PN+ T + L++G+C++KR++E +++ M PN T +L+HG+F
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 127 ----------------------------------RCLDPHKAFELLIRFMEREPLTQKLV 152
+ D AF LL + + + L+
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258
Query: 153 CNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFI 212
NT++ L +A + ++M +G P T+ ++CL ++ +L I
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 213 KRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD 272
+R + P T+ L++A K G+ VE ++ + + K + ++ +Y+ +I+ FC + +D
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378
Query: 273 RATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332
A ++ M + P++VT+NTLI G CK V + E+ + + G + T+N +I
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 438
Query: 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRIS 392
L +A + A + EMV GVPPN +TYN L+ LC G + +++ +F+ +Q ++
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498
Query: 393 PDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQT 452
P IYT+N +I+ C+ K+E F ++ G++PD +Y+ +I + G +EA
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 558
Query: 453 FLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGIS 497
F M+++G P+S N ++ ++ G E + +++K + G +
Sbjct: 559 FKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFA 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/507 (27%), Positives = 245/507 (48%), Gaps = 16/507 (3%)
Query: 5 GISPSTRLYNAVIDALVKSN-SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63
G P YNAV+DA ++S +I A F++M Q P+ FTYNILI G C G +D
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 64 ALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
AL L +ME G PNV TY LIDG+C +++ + F++L M + + PN + +++
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP 183
G+ R + +L R ++ NTL+ +A + +M G P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343
Query: 184 ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYL 243
T+ + + ++N LD RG+ P TY L++ + G E R L
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403
Query: 244 NHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD 303
+ + +V +YN +I+ C M+ A + +M+++ ++P++V+++T++SG C+
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463
Query: 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363
+V + + ++E G KPD T++S+I C R ++A D EM+ G+PP+ TY
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 523
Query: 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423
LI + C GD+ ++L+L +M + PD+ T++ LI + ++ +A++ +
Sbjct: 524 TALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFY 583
Query: 424 LGLRPDNFSYSALIK-----------ALIKS----GRFDEAKQTFLSMEQNGCNPDSYTS 468
P + +Y LI+ +LIK G EA Q F SM PD
Sbjct: 584 EESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAY 643
Query: 469 NLILETLVQQGRFEEAHDIVKTSKERG 495
N+++ + G +A+ + K + G
Sbjct: 644 NIMIHGHCRAGDIRKAYTLYKEMVKSG 670
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 249/486 (51%)
Query: 4 LGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63
LGIS + Y+ +I+ + + + LA +M +PD T N L++G C + +
Sbjct: 110 LGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISD 169
Query: 64 ALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
A+ LV QM +GY P+ +T+ LI G R +E +++ M + P+ T +V+
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229
Query: 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP 183
G+ + D A LL + + + ++ NT++ L N ++A + +M ++G P
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289
Query: 184 ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYL 243
T++ + CL ++ +L I+R + P T+ L++A K G+ VE ++
Sbjct: 290 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 349
Query: 244 NHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD 303
+ + K + ++ +Y+ +I+ FC + +D A + M +D PN+VT+NTLI G CK
Sbjct: 350 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKA 409
Query: 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363
V + EL + + G + T+ ++I +A ++A +MV GV P+ +TY
Sbjct: 410 KRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTY 469
Query: 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423
+IL+ LC G V +L +F+ +Q ++ PDIYT+N +I+ C+ K+E F S+
Sbjct: 470 SILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 529
Query: 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEE 483
G++P+ +Y+ ++ + G +EA F M++ G PDS T N ++ ++ G
Sbjct: 530 KGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAA 589
Query: 484 AHDIVK 489
+ ++++
Sbjct: 590 SAELIR 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/487 (25%), Positives = 249/487 (51%), Gaps = 3/487 (0%)
Query: 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEG 73
N + +V++ ++ + + M PD LI G CR+G +A ++++ +EG
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 74 LGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHK 133
G P+V TY ++I G+C A + VL+ M +V P+ T +++ + +
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQ 222
Query: 134 AFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVT 193
A E+L R ++R+ + L+ +S A +L +M DRG P+ T++ V
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN 282
Query: 194 CLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVS 253
+ L+E L+ G +P T+ +++ ++ GR ++ ++ L + +
Sbjct: 283 GICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSP 342
Query: 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELL 313
+V ++N++I+ C+ ++ RA +I +M PN +++N L+ G CK+ ++ + E L
Sbjct: 343 SVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYL 402
Query: 314 VMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373
++ G PD T+N+M+ LC+ + EDA++ L+++ G P ITYN +I L
Sbjct: 403 ERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKA 462
Query: 374 GDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSY 433
G ++++L +M+A + PD T+++L+ R K+++A K F +G+RP+ ++
Sbjct: 463 GKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTF 522
Query: 434 SALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493
++++ L KS + D A + M GC P+ + +++E L +G +EA +++
Sbjct: 523 NSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCN 582
Query: 494 RGISFKS 500
+G+ KS
Sbjct: 583 KGLMKKS 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/499 (26%), Positives = 228/499 (45%), Gaps = 36/499 (7%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
I G+ P T YN +++ LV NS+ L + +MSV KPD T+N+LI +CR
Sbjct: 145 IDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
+ A+ +++ M G P+ T+T ++ G+ + R+ E M E + +V
Sbjct: 205 LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDR- 179
+VHG + +A +++M ++
Sbjct: 265 IVHGFCK-----------------------------------EGRVEDALNFIQEMSNQD 289
Query: 180 GYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239
G+ P+ TF+ V L + I+D ++ G P TY ++ L K G E
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
Query: 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISG 299
L+ + N +YN +I CK N ++ ATE+ R + + I P++ TFN+LI G
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 300 HCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359
C EL + G +PD+FT+N +ID LC + ++AL+ L +M G +
Sbjct: 410 LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Query: 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFF 419
ITYN LI C + +F +M+ +S + T+N LI C+ ++E A +
Sbjct: 470 VITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMD 529
Query: 420 SMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479
M+ G +PD ++Y++L+ + G +A +M NGC PD T ++ L + G
Sbjct: 530 QMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
Query: 480 RFEEAHDIVKTSKERGISF 498
R E A ++++ + +GI+
Sbjct: 590 RVEVASKLLRSIQMKGINL 608
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | ||||||
| 224099199 | 548 | predicted protein [Populus trichocarpa] | 1.0 | 0.919 | 0.702 | 0.0 | |
| 255556314 | 719 | pentatricopeptide repeat-containing prot | 0.914 | 0.641 | 0.669 | 0.0 | |
| 449503889 | 697 | PREDICTED: putative pentatricopeptide re | 0.940 | 0.680 | 0.626 | 1e-179 | |
| 356523854 | 678 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.743 | 0.589 | 1e-176 | |
| 449433429 | 688 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.928 | 0.680 | 0.616 | 1e-174 | |
| 15228903 | 659 | pentatricopeptide repeat-containing prot | 0.869 | 0.664 | 0.596 | 1e-165 | |
| 297834586 | 653 | pentatricopeptide repeat-containing prot | 0.948 | 0.732 | 0.575 | 1e-163 | |
| 357150350 | 684 | PREDICTED: putative pentatricopeptide re | 0.982 | 0.723 | 0.475 | 1e-141 | |
| 125537003 | 696 | hypothetical protein OsI_38705 [Oryza sa | 0.962 | 0.696 | 0.483 | 1e-139 | |
| 77556780 | 696 | pentatricopeptide, putative, expressed [ | 0.962 | 0.696 | 0.481 | 1e-138 |
| >gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa] gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/504 (70%), Positives = 414/504 (82%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
ISFLGI+PSTRLYNAVIDALVKSNS+DLAYLKFQQMS D CKPDRFTYN+LIHG+C+IGV
Sbjct: 45 ISFLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHGVCKIGV 104
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
VDEALRLVKQMEG GY+ NVYTYT LI GFCNAKRV E FRV E MK RNV PNEAT+RS
Sbjct: 105 VDEALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDEAFRVFETMKLRNVNPNEATIRS 164
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180
LVHGVFRC+ P +AFEL+I F+E+EP+ +L C+TLL LS M EA A+LRK+G+RG
Sbjct: 165 LVHGVFRCVAPREAFELVIDFIEKEPVLGRLACDTLLCCLSEKCMPREAGALLRKLGERG 224
Query: 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240
YLP+SSTF+ T+TCL+ GLD+NETCGILD FI RG K FS YL L+E LYKAGR +EGD
Sbjct: 225 YLPDSSTFNITMTCLLKGLDVNETCGILDKFIARGAKLGFSFYLALIETLYKAGRGMEGD 284
Query: 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300
RYLN + KDRLVS+V SYNM+IDCFCK N+M++A + + M+DR ++PNLVTFNTLISGH
Sbjct: 285 RYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTFNTLISGH 344
Query: 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
CKD EVHK RELL MLLE G KPD FTF+S+IDCLCRA +F+DAL C SEMVEWG+ PN
Sbjct: 345 CKDGEVHKARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNA 404
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420
+TYNILIRSLC IGDV RS++L + M+ D ISPDI++FNALIQSFCRM K+EKAEK F S
Sbjct: 405 VTYNILIRSLCLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCRMGKVEKAEKMFVS 464
Query: 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGR 480
M TLGL P+N++Y AL+KAL + GR DEAK+ F SME NGC PDS+T NLI E L +QG
Sbjct: 465 MSTLGLIPNNYTYGALVKALFELGRCDEAKKMFFSMEVNGCVPDSFTCNLISENLFKQGD 524
Query: 481 FEEAHDIVKTSKERGISFKSFPGL 504
FEE +I K ERGI+ KS P +
Sbjct: 525 FEELQNIAKICSERGIALKSIPAV 548
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/496 (66%), Positives = 400/496 (80%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
ISFLGISPSTRLYNAVIDALVKSNS+DLAYLKFQQMS D CKPDRFTYNILIHG+CR GV
Sbjct: 208 ISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGV 267
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
VDEALRLVKQMEGLGY+PNV+TYTILIDGF NAK+V E FRVLE MK R V P+EAT+RS
Sbjct: 268 VDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRS 327
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180
+HGVFRC+ P+KAFEL I F+EREP+ Q+L C+TLL LS+ +MA EA A+L+K G G
Sbjct: 328 FIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIG 387
Query: 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240
+ P+S+TF+ + CL+ G DLNE C ILD F+++G+K FSTYL L++ALY AG+ EG+
Sbjct: 388 HKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGN 447
Query: 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300
Y N + KD L+ NV SYNMVIDCFCK +MMD+AT +EM+ + I PNLVTFNTLI G+
Sbjct: 448 HYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGY 507
Query: 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
CK E+ K+R+LLVMLLE GFKPD FTF+S+ID LCRA + EDAL C SEMV WG+ PN
Sbjct: 508 CKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNA 567
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420
+TYNILI SLC IGDV RS++L +KMQ D I+PD+++FNALIQSFCRM K+E A+K F S
Sbjct: 568 VTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSS 627
Query: 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGR 480
ML+LGL PDN++Y A IK +SGRF+EAK+ FLSME NGC PDS+T N+IL+ LV+Q +
Sbjct: 628 MLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQ 687
Query: 481 FEEAHDIVKTSKERGI 496
FE A I KT E GI
Sbjct: 688 FEAAQKIAKTCSEWGI 703
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 299/477 (62%), Positives = 374/477 (78%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
I LG++P+TRLYNAV+DAL+KSNS+DLAYLKFQQMS C PDRFTYNILIHG+CR+GV
Sbjct: 220 IGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGV 279
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
VDEALRL+KQMEGLGY PNV+TYTILIDGF NAKR E F+VL+ MKERNV PNEAT+RS
Sbjct: 280 VDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATMRS 339
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180
LVHGVFRC+ P KAFELL+ F+ER+ +LVC+ +LY LSNNSMASEA L K G G
Sbjct: 340 LVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGKEG 399
Query: 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240
Y+P SSTF+ T+ C++ LDL TC + D ++ GVKP FSTYL L+EALYKAG+ G+
Sbjct: 400 YVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGN 459
Query: 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300
RY++ + D L+SN+ SYNMVIDC CK MDRA+E+ R++ +R I+PN+VT+NTLI G
Sbjct: 460 RYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGF 519
Query: 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
C++ + K +ELL MLLE F+PD FTFNS+ID LC+AH+ E+A C +EMVEW VPPN
Sbjct: 520 CRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNV 579
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420
ITYNILI S CAIGDV+RS L ++M+ I PD ++FNALIQ + N+ +KAEK F S
Sbjct: 580 ITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDS 639
Query: 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQ 477
ML LG++PDN++Y ALIK+L KSGR D+A++ FLSM++NGC PDSYT +L +TL
Sbjct: 640 MLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAH 696
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1614), Expect = e-176, Method: Compositional matrix adjust.
Identities = 300/509 (58%), Positives = 380/509 (74%), Gaps = 5/509 (0%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
ISFLG+SP+TRLYNA+IDALVKSNSIDLAYLKFQQM+ D C DRFTYN LIHG+C++GV
Sbjct: 170 ISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGV 229
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
VDEALRLV+QM+ G+ PNV+TYT+LI+GFC A RV E F V E MK+ V PNEATVR+
Sbjct: 230 VDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRA 289
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQK----LVCNTLLYRLSNNSMASEAAAILRK- 175
LVHGVFRC+DP KA ELL F++RE ++ L C+T+LY L+NNSMA E LR+
Sbjct: 290 LVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMVVFLRRV 349
Query: 176 MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGR 235
+G GY P +S F+ + CLV G +L ETC + + K+GVK YL L+E LYK
Sbjct: 350 LGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEW 409
Query: 236 DVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNT 295
EGDR + D L+SNV SYNM+I+CFC+ +MD A+E R+M+ R + PNLVTFNT
Sbjct: 410 REEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNT 469
Query: 296 LISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWG 355
LI+GHCKD + K R+LL LLE G KPD FTF+S++D LC+ R E+AL+C +EM+EWG
Sbjct: 470 LINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWG 529
Query: 356 VPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAE 415
+ PN + YNILIRSLC IGDVARS++L ++MQ + ISPD Y++NALIQ FCRMNK+EKA+
Sbjct: 530 INPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAK 589
Query: 416 KAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETL 475
K F SM GL PDN++YSA I+AL +SGR +EAK+ F SME NGC+PDSY NLI++ L
Sbjct: 590 KLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKIL 649
Query: 476 VQQGRFEEAHDIVKTSKERGISFKSFPGL 504
VQQ EEA +I++ +++GIS S P L
Sbjct: 650 VQQEYVEEAQNIIERCRQKGISLNSIPNL 678
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/477 (61%), Positives = 369/477 (77%), Gaps = 9/477 (1%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
I LG++P+TRLYNAV+DAL+KSNS+DLAYLKFQQMS C PDRFTYNILIHG+CR+GV
Sbjct: 220 IGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGV 279
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
VDEALRL+KQMEGLGY PNV+TYTILIDGF NAKR E F+VL+ MKERNV PNEAT+RS
Sbjct: 280 VDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATMRS 339
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180
LVHGVFRC+ P KAFELL+ F+ER+ +LVC+ +LY LSNNSMASEA
Sbjct: 340 LVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVM--------- 390
Query: 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240
+ P SSTF+ T+ C++ LDL TC + D ++ GVKP FSTYL L+EALYKAG+ G+
Sbjct: 391 FXPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGN 450
Query: 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300
RY++ + D L+SN+ SYNMVIDC CK MDRA+E+ R++ +R I+PN+VT+NTLI G
Sbjct: 451 RYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGF 510
Query: 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
C++ + K +ELL MLLE F+PD FTFNS+ID LC+AH+ E+A C +EMVEW VPPN
Sbjct: 511 CRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNV 570
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420
ITYNILI S CAIGDV+RS L ++M+ I PD ++FNALIQ + N+ +KAEK F S
Sbjct: 571 ITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDS 630
Query: 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQ 477
ML LG++PDN++Y ALIK+L KSGR D+A++ FLSM++NGC PDSYT +L +TL
Sbjct: 631 MLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAH 687
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial; AltName: Full=Protein PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana] gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 282/473 (59%), Positives = 356/473 (75%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
ISFLG+ PSTRLYNAVIDALVKSNS+DLAYLKFQQM D CKPDRFTYNILIHG+C+ GV
Sbjct: 171 ISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGV 230
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
VDEA+RLVKQME G PNV+TYTILIDGF A RV E + LE+M+ R + PNEAT+R+
Sbjct: 231 VDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRT 290
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180
VHG+FRCL P KAFE+L+ FME++ Q++ + +LY LSNNSMA E LRK+G+RG
Sbjct: 291 FVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERG 350
Query: 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240
Y+P+SSTF+ ++CL+ G DL ETC I D F+ RGVKP F+ YL+L++AL A R EGD
Sbjct: 351 YIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGD 410
Query: 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300
RYL + D L+S+V SYN VIDC CK ++ A EM+DR I+PNLVTFNT +SG+
Sbjct: 411 RYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGY 470
Query: 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
+V K +L LL GFKPD TF+ +I+CLCRA +DA DC EM+EWG+ PN
Sbjct: 471 SVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNE 530
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420
ITYNILIRS C+ GD RS++LF KM+ + +SPD+Y +NA IQSFC+M K++KAE+ +
Sbjct: 531 ITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKT 590
Query: 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILE 473
ML +GL+PDNF+YS LIKAL +SGR EA++ F S+E++GC PDSYT L+ E
Sbjct: 591 MLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEE 643
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/478 (57%), Positives = 355/478 (74%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
ISFLG+ PSTRLYNAVIDALVKSNS++LAY+KFQQM D CKPDRFTYNILIHG+C+ GV
Sbjct: 165 ISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGVCKKGV 224
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
VDEA+RLVKQME G PNV+TYTILIDGF A R+ E + LE+M+ R + PNEAT+R+
Sbjct: 225 VDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVRKLNPNEATIRT 284
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180
LVHG+FRCL P +AFE+L+ FME+ + Q++ +T+LY LSNNSMA E A LRK G+RG
Sbjct: 285 LVHGIFRCLPPCEAFEVLLGFMEKNSILQRVAYDTVLYCLSNNSMAKETALFLRKTGERG 344
Query: 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240
Y+P+SSTF+ + CL+ G L ETCGI D F+ RG KP F+ YL+L++AL A R GD
Sbjct: 345 YIPDSSTFNAAMNCLLKGHHLVETCGIFDCFVSRGAKPGFNGYLVLVQALLNAQRFSAGD 404
Query: 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300
RYL + D L+S+V +YN VIDC CK + A EM+DR I+PNL+TFNT +SG+
Sbjct: 405 RYLKQMGGDGLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGY 464
Query: 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
+V K ++ LLE G PD TF+ +I+CLCRA +DA DC EM+EWG+ PN
Sbjct: 465 SAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNE 524
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420
ITYNILIRS C+ GD RS++LF M+ +SP++Y +NA+IQSFC+M K++KAE+ +
Sbjct: 525 ITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKT 584
Query: 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQ 478
ML +GL+PDNF+YS LIKAL +SGR EA++ F SME++GC PDSYT L+ E ++Q
Sbjct: 585 MLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHGCVPDSYTKRLVEELDLRQ 642
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/496 (47%), Positives = 333/496 (67%), Gaps = 1/496 (0%)
Query: 4 LGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63
LG+ PST +YNA+I A V++ ++D AYL+FQQM D C+PD FTYN L+HG+C+ G++DE
Sbjct: 170 LGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDE 229
Query: 64 ALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
ALRLV+QMEG G PNV+TYT+L+DGFCNA R + V + MKE+ V PNEA+ R+LVH
Sbjct: 230 ALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVH 289
Query: 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP 183
G FRCL HKA+ +L ++ REP +LY LS N MA E + +KM RGYL
Sbjct: 290 GAFRCLGRHKAYVMLTEWLGREPPPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSRGYLL 349
Query: 184 ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYL 243
+++ F V+C V L+L++ CG+LD F+K+G P F Y++++++L + + YL
Sbjct: 350 DNAIFGIVVSCAVKCLELSDLCGLLDDFVKKGGNPGFDVYIMVIKSLLGCKSSSKANHYL 409
Query: 244 NHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD 303
+ D L+S V SYNMVIDCF K +D+A EI +EMR++ + PNLVTFNTLISG+ K
Sbjct: 410 KRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKL 469
Query: 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363
VH + +L ML+E G PD TF S+I+ LC H+ +DA DC +EM EWGV PN TY
Sbjct: 470 GNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTY 529
Query: 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423
N+L+ +LC+ G V +++ L KM+ D I+PD Y+FNA I SFCRM K++KA F +ML
Sbjct: 530 NVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLR 589
Query: 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNL-ILETLVQQGRFE 482
LG+ PDN++Y++LIKAL R DEAK+ L ME +G + ++ ++L I+ L + G+F
Sbjct: 590 LGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSGSSATTHHTHLPIVSALTKTGQFS 649
Query: 483 EAHDIVKTSKERGISF 498
+A ++ R +
Sbjct: 650 KAGQLMNKYNRRNVQL 665
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/486 (48%), Positives = 334/486 (68%), Gaps = 1/486 (0%)
Query: 4 LGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63
LG+ PST +YNA+I A V++ ++D AYL+FQQM D C+PDRFTYN L+HG+CR G+VDE
Sbjct: 182 LGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDE 241
Query: 64 ALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
A+RLV+QMEG G PNV+TYT+L+DGFCNA RV E FR+L+ MKE+ V P+EAT R+LVH
Sbjct: 242 AVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVH 301
Query: 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP 183
GVFRCL+ KA+ +L ++ E C+T+LY LS MA EA ++M RGYL
Sbjct: 302 GVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFAKRMSARGYLL 361
Query: 184 ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYL 243
+S+ F ++C + L++++ C +LD+FIK G P F Y++++++L + + YL
Sbjct: 362 DSTAFGIVMSCSLKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYL 421
Query: 244 NHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD 303
H+ L+S+V SYNMVIDCF K +D+A EI +EM+D+ PNLVTFNTLISG+ K
Sbjct: 422 GHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKL 481
Query: 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363
VH + +L ML+E GF PD TF S+ID LC H+ +DA C EM EWGV PN TY
Sbjct: 482 GNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTY 541
Query: 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423
N+L+ +LC+ G V +++ L KM+ D ++PD Y+FNALI SFCRM K++KAE F M+
Sbjct: 542 NVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVR 601
Query: 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNL-ILETLVQQGRFE 482
G+ PD+++Y++LIKAL R ++AK+ + E++GC+ + S I+ L + G+F
Sbjct: 602 FGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFS 661
Query: 483 EAHDIV 488
EA +++
Sbjct: 662 EAGELM 667
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/486 (48%), Positives = 333/486 (68%), Gaps = 1/486 (0%)
Query: 4 LGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63
LG+ PST +YNA+I A V++ ++D AYL+FQQM D C+PD FTYN L+HG+CR G+VDE
Sbjct: 182 LGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDE 241
Query: 64 ALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
A+RLV+QMEG G PNV+TYT+L+DGFCNA RV E FR+L+ MKE+ V P+EAT R+LVH
Sbjct: 242 AVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVH 301
Query: 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP 183
GVFRCL+ KA+ +L ++ E C+T+LY LS MA EA ++M RGYL
Sbjct: 302 GVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLL 361
Query: 184 ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYL 243
+S+ F ++C + L++++ C +LD+FIK G P F Y++++++L + + YL
Sbjct: 362 DSTAFGIVMSCALKCLEVSDLCELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYL 421
Query: 244 NHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD 303
H+ L+S+V SYNMVIDCF K +D+A EI +EM+D+ PNLVTFNTLISG+ K
Sbjct: 422 GHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKL 481
Query: 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363
VH + +L ML+E GF PD TF S+ID LC H+ +DA C EM EWGV PN TY
Sbjct: 482 GNVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTY 541
Query: 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423
N+L+ +LC+ G V +++ L KM+ D ++PD Y+FNALI SFCRM K++KAE F M+
Sbjct: 542 NVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVR 601
Query: 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNL-ILETLVQQGRFE 482
G+ PD+++Y++LIKAL R ++AK+ + E++GC+ + S I+ L + G+F
Sbjct: 602 FGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFS 661
Query: 483 EAHDIV 488
EA +++
Sbjct: 662 EAGELM 667
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 504 | ||||||
| TAIR|locus:2086032 | 659 | PPR40 "pentatricopeptide (PPR) | 0.938 | 0.717 | 0.596 | 7.6e-151 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.954 | 0.525 | 0.295 | 5.3e-63 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.964 | 0.772 | 0.275 | 1.2e-58 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.968 | 0.794 | 0.271 | 1.7e-57 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.992 | 0.793 | 0.276 | 1.6e-56 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.958 | 0.766 | 0.275 | 2e-56 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.970 | 0.654 | 0.278 | 5.3e-56 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.948 | 0.799 | 0.253 | 8.6e-56 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.960 | 0.763 | 0.270 | 2.3e-55 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.918 | 0.802 | 0.286 | 2.1e-54 |
| TAIR|locus:2086032 PPR40 "pentatricopeptide (PPR) domain protein 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
Identities = 282/473 (59%), Positives = 356/473 (75%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
ISFLG+ PSTRLYNAVIDALVKSNS+DLAYLKFQQM D CKPDRFTYNILIHG+C+ GV
Sbjct: 171 ISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGV 230
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
VDEA+RLVKQME G PNV+TYTILIDGF A RV E + LE+M+ R + PNEAT+R+
Sbjct: 231 VDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNEATIRT 290
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180
VHG+FRCL P KAFE+L+ FME++ Q++ + +LY LSNNSMA E LRK+G+RG
Sbjct: 291 FVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERG 350
Query: 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240
Y+P+SSTF+ ++CL+ G DL ETC I D F+ RGVKP F+ YL+L++AL A R EGD
Sbjct: 351 YIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGD 410
Query: 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300
RYL + D L+S+V SYN VIDC CK ++ A EM+DR I+PNLVTFNT +SG+
Sbjct: 411 RYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGY 470
Query: 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
+V K +L LL GFKPD TF+ +I+CLCRA +DA DC EM+EWG+ PN
Sbjct: 471 SVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNE 530
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420
ITYNILIRS C+ GD RS++LF KM+ + +SPD+Y +NA IQSFC+M K++KAE+ +
Sbjct: 531 ITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKT 590
Query: 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILE 473
ML +GL+PDNF+YS LIKAL +SGR EA++ F S+E++GC PDSYT L+ E
Sbjct: 591 MLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEE 643
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 5.3e-63, P = 5.3e-63
Identities = 144/488 (29%), Positives = 251/488 (51%)
Query: 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQME 72
YN ++++L + +D + +M D+ P+ +TYN +++G C++G V+EA + V ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 73 GLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG--VFRCLD 130
G P+ +TYT LI G+C K + F+V M + NE L+HG V R +D
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 131 PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDY 190
+A +L ++ + E L+ L + SEA ++++M + G P T+
Sbjct: 306 --EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 191 TVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250
+ L + + +L +++G+ P TY L+ K G +E + + + R
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGM-IEDAVDVVELMESR 422
Query: 251 LVS-NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKT 309
+S N +YN +I +CK N+ +A + +M +R + P++VT+N+LI G C+
Sbjct: 423 KLSPNTRTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA 481
Query: 310 RELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRS 369
LL ++ + G PD++T+ SMID LC++ R E+A D + + GV PN + Y LI
Sbjct: 482 YRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDG 541
Query: 370 LCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD 429
C G V + + +KM + P+ TFNALI C K+++A M+ +GL+P
Sbjct: 542 YCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPT 601
Query: 430 NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVK 489
+ + LI L+K G FD A F M +G PD++T ++T ++GR +A D++
Sbjct: 602 VSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMA 661
Query: 490 TSKERGIS 497
+E G+S
Sbjct: 662 KMRENGVS 669
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 135/490 (27%), Positives = 254/490 (51%)
Query: 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRL 67
PS +N ++ A+ K N DL ++M + D ++YNILI+ CR + AL +
Sbjct: 78 PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 68 VKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127
+ +M LGY P++ T + L++G+C+ KR++E +++ M PN T +L+HG+F
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197
Query: 128 CLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESST 187
+A L+ R + R T++ L A ++L+KM ++G + E+
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKI-EADV 255
Query: 188 FDYT--VTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNH 245
YT + L ++N+ + +G++P TY L+ L GR + R L+
Sbjct: 256 VIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSD 315
Query: 246 VFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305
+ + ++ NV +++ +ID F K + A ++ EM R I P++ T+++LI+G C
Sbjct: 316 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375
Query: 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNI 365
+ + + + +++ P+ T+N++I C+A R E+ ++ EM + G+ NT+TYN
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435
Query: 366 LIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425
LI+ L GD + ++F+KM +D + PDI T++ L+ C+ K+EKA F +
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK 495
Query: 426 LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAH 485
+ PD ++Y+ +I+ + K+G+ ++ F S+ G P+ ++ ++G EEA
Sbjct: 496 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEAD 555
Query: 486 DIVKTSKERG 495
+ + KE G
Sbjct: 556 ALFREMKEDG 565
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 133/490 (27%), Positives = 253/490 (51%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
+ LG+S + YN +I+ L + + + A +M P T N L++G C
Sbjct: 91 MEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNR 150
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120
+ EA+ LV QM +GY P+ T+T L+ G + +E ++E M + P+ T +
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 210
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVC-NTLLYRLSNNSMASEAAAILRKMGDR 179
+++G+ + +P A LL + ME+ + +V +T++ L +A + +M ++
Sbjct: 211 VINGLCKRGEPDLALNLLNK-MEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK 269
Query: 180 GYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239
G P+ T+ ++CL ++ +L ++R + P T+ L++A K G+ +E
Sbjct: 270 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEA 329
Query: 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISG 299
++ + + + + N+ +YN +I+ FC + +D A +I M +D P++VT+NTLI+G
Sbjct: 330 EKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLING 389
Query: 300 HCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359
CK +V EL + G + T+ ++I +A ++A +MV GV PN
Sbjct: 390 FCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPN 449
Query: 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFF 419
+TYN L+ LC G + +++ +F+ +Q ++ PDIYT+N + + C+ K+E F
Sbjct: 450 IMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFC 509
Query: 420 SMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479
S+ G++PD +Y+ +I K G +EA F+ M+++G PDS T N ++ ++ G
Sbjct: 510 SLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDG 569
Query: 480 RFEEAHDIVK 489
+ +++K
Sbjct: 570 DKAASAELIK 579
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 139/503 (27%), Positives = 257/503 (51%)
Query: 4 LGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63
LGIS + Y+ +I+ + + + LA +M +PD T N L++G C + +
Sbjct: 110 LGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISD 169
Query: 64 ALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
A+ LV QM +GY P+ +T+ LI G R +E +++ M + P+ T +V+
Sbjct: 170 AVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229
Query: 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVC-NTLLYRLSNNSMASEAAAILRKMGDRGYL 182
G+ + D A LL + ME+ + +V NT++ L N ++A + +M ++G
Sbjct: 230 GLCKRGDIDLALSLLKK-MEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIR 288
Query: 183 PESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242
P T++ + CL ++ +L I+R + P T+ L++A K G+ VE ++
Sbjct: 289 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 348
Query: 243 LNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK 302
+ + K + ++ +Y+ +I+ FC + +D A + M +D PN+VT+NTLI G CK
Sbjct: 349 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 408
Query: 303 DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT 362
V + EL + + G + T+ ++I +A ++A +MV GV P+ +T
Sbjct: 409 AKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMT 468
Query: 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSML 422
Y+IL+ LC G V +L +F+ +Q ++ PDIYT+N +I+ C+ K+E F S+
Sbjct: 469 YSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528
Query: 423 TLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFE 482
G++P+ +Y+ ++ + G +EA F M++ G PDS T N ++ ++ G
Sbjct: 529 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKA 588
Query: 483 EAHDIVKTSKE-RGISFKSFPGL 504
+ ++++ + R + S GL
Sbjct: 589 ASAELIREMRSCRFVGDASTIGL 611
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 136/493 (27%), Positives = 257/493 (52%)
Query: 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRL 67
PS ++ ++ A+ K N D+ +QM + +TY+ILI+ CR + AL +
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 68 VKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127
+ +M LGY PN+ T + L++G+C++KR++E +++ M PN T +L+HG+F
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 128 CLDPHKAFELLIRFMER--EP--LTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYL- 182
+A L+ R + + +P +T +V N L R + +A +L KM ++G L
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR-GDTDLAFN---LLNKM-EQGKLE 253
Query: 183 PESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242
P ++ + L +++ + +G++P TY L+ L GR + R
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313
Query: 243 LNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK 302
L+ + + ++ +V +++ +ID F K + A ++ EM R I P++VT+++LI+G C
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 303 DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT 362
+ + +++ ++ PD T+N++I C+ R E+ ++ EM + G+ NT+T
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSML 422
YNILI+ L GD + +F++M +D + P+I T+N L+ C+ K+EKA F +
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493
Query: 423 TLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFE 482
+ P ++Y+ +I+ + K+G+ ++ F ++ G PD N ++ ++G E
Sbjct: 494 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE 553
Query: 483 EAHDIVKTSKERG 495
EA + K KE G
Sbjct: 554 EADALFKEMKEDG 566
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 142/509 (27%), Positives = 248/509 (48%)
Query: 5 GISPSTRLYNAVIDALVKSN-SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63
G P YNAV+DA ++S +I A F++M Q P+ FTYNILI G C G +D
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 64 ALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
AL L +ME G PNV TY LIDG+C +++ + F++L M + + PN + +++
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 124 GVFRCLDPH-KAFELLIRFMEREPLT-QKLVCNTLLYRLSNNSMASEAAAILRKMGDRGY 181
G+ C + K ++ M R + ++ NTL+ +A + +M G
Sbjct: 284 GL--CREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341
Query: 182 LPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDR 241
P T+ + + ++N LD RG+ P TY L++ + G E R
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401
Query: 242 YLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHC 301
L + + +V +YN +I+ C M+ A + +M+++ ++P++V+++T++SG C
Sbjct: 402 VLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC 461
Query: 302 KDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI 361
+ +V + + ++E G KPD T++S+I C R ++A D EM+ G+PP+
Sbjct: 462 RSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEF 521
Query: 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421
TY LI + C GD+ ++L+L +M + PD+ T++ LI + ++ +A++ +
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
Query: 422 LTLGLRPDNFSYSALIK-----------ALIKS----GRFDEAKQTFLSMEQNGCNPDSY 466
P + +Y LI+ +LIK G EA Q F SM PD
Sbjct: 582 FYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGT 641
Query: 467 TSNLILETLVQQGRFEEAHDIVKTSKERG 495
N+++ + G +A+ + K + G
Sbjct: 642 AYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 122/481 (25%), Positives = 247/481 (51%)
Query: 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN 79
+V++ ++ + + M PD LI G CR+G +A ++++ +EG G P+
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171
Query: 80 VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLI 139
V TY ++I G+C A E+ L ++ +V P+ T +++ + +A E+L
Sbjct: 172 VITYNVMISGYCKA---GEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 140 RFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGL 199
R ++R+ + L+ +S A +L +M DRG P+ T++ V +
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288
Query: 200 DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYN 259
L+E L+ G +P T+ +++ ++ GR ++ ++ L + + +V ++N
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348
Query: 260 MVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLEC 319
++I+ C+ ++ RA +I +M PN +++N L+ G CK+ ++ + E L ++
Sbjct: 349 ILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408
Query: 320 GFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARS 379
G PD T+N+M+ LC+ + EDA++ L+++ G P ITYN +I L G ++
Sbjct: 409 GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKA 468
Query: 380 LRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKA 439
++L +M+A + PD T+++L+ R K+++A K F +G+RP+ ++++++
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLG 528
Query: 440 LIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGISFK 499
L KS + D A + M GC P+ + +++E L +G +EA +++ +G+ K
Sbjct: 529 LCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKK 588
Query: 500 S 500
S
Sbjct: 589 S 589
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 133/492 (27%), Positives = 251/492 (51%)
Query: 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRL 67
PS +N ++ A+ K D+ ++M + +TYNILI+ CR + AL L
Sbjct: 83 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 68 VKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127
+ +M LGY P++ T + L++G+C+ KR+++ +++ M E P+ T +L+HG+F
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 128 CLDPHKAFELLIRFMER--EP--LTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP 183
+A L+ R ++R +P +T +V N L R + +A +L KM
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKR-GDTDLALN---LLNKMEAAKIEA 258
Query: 184 ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYL 243
+ F+ + L +++ + +G++P TY L+ L GR + + L
Sbjct: 259 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 318
Query: 244 NHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD 303
+ + + ++ N+ ++N +ID F K A ++ +M R I P++ T+N+L++G C
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 378
Query: 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363
+ K +++ ++ PD T+N++I C++ R ED + EM G+ +T+TY
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438
Query: 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423
LI+ L GD + ++F++M +D + PDI T++ L+ C K+EKA + F M
Sbjct: 439 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498
Query: 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEE 483
++ D + Y+ +I+ + K+G+ D+ F S+ G P+ T N ++ L + +E
Sbjct: 499 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 558
Query: 484 AHDIVKTSKERG 495
A+ ++K KE G
Sbjct: 559 AYALLKKMKEDG 570
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 133/465 (28%), Positives = 237/465 (50%)
Query: 4 LGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63
LGIS + YN +I+ + + I LA +M +P T + L++G C + +
Sbjct: 114 LGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISD 173
Query: 64 ALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
A+ LV QM +GY P+ T+T LI G + +E +++ M +R PN T +V+
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233
Query: 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVC-NTLLYRLSNNSMASEAAAILRKMGDRGYL 182
G+ + D AF LL + ME + +V +T++ L +A + +M ++G
Sbjct: 234 GLCKRGDIDLAFNLLNK-MEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 292
Query: 183 PESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242
P T+ ++CL ++ +L I+R + P T+ L++A K G+ VE ++
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKL 352
Query: 243 LNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK 302
+ + K + ++ +Y+ +I+ FC + +D A + M +D PN+VT+NTLI+G CK
Sbjct: 353 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCK 412
Query: 303 DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT 362
+ + EL + + G + T+ ++I +A ++A +MV GV PN +T
Sbjct: 413 AKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMT 472
Query: 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSML 422
YN L+ LC G + +++ +F+ +Q ++ P IYT+N +I+ C+ K+E F S+
Sbjct: 473 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLS 532
Query: 423 TLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYT 467
G++PD Y+ +I + G +EA F M ++G PDS T
Sbjct: 533 LKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LSQ2 | PP239_ARATH | No assigned EC number | 0.5961 | 0.8690 | 0.6646 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 504 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| COG1729 | 262 | COG1729, COG1729, Uncharacterized protein conserve | 0.003 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-26
Identities = 105/415 (25%), Positives = 168/415 (40%), Gaps = 51/415 (12%)
Query: 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRL 67
P+ +N ++ S ID A + + K D Y LI + G VD +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 68 VKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127
+M G NV+T+ LIDG A +VA+ F IM+ +NV P+ +L+ +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 128 CLDPHKAFELLIRF-MEREPLTQKLVCNTLLYRLSNNS----MASEAAAILRKMGDRGYL 182
+AF++L E P+ + L + N+ A E ++ + +G
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT- 613
Query: 183 PESSTFDYTV---TCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239
PE YT+ +C G D + I D K+GVKP E + A DV G
Sbjct: 614 PEV----YTIAVNSCSQKG-DWDFALSIYDDMKKKGVKPD--------EVFFSALVDVAG 660
Query: 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISG 299
H +D+A EI ++ R + I V++++L+
Sbjct: 661 -----H----------------------AGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
Query: 300 HCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359
K EL + +P T N++I LC ++ AL+ LSEM G+ PN
Sbjct: 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753
Query: 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKA 414
TITY+IL+ + D L L + + D I P++ + C + + EKA
Sbjct: 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC-LRRFEKA 806
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 1e-20
Identities = 63/292 (21%), Positives = 125/292 (42%), Gaps = 47/292 (16%)
Query: 215 GVKPRFSTYLLLMEALYKAGRDVE-----GDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269
GV+ T+ L++ +AG+ + G +V DR+V +N +I +
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV-----FNALISACGQSG 556
Query: 270 MMDRATEICREMR--DRDIAPNLVTFNTLISGHCKDAEVHKTRELLVML--------LEC 319
+DRA ++ EM+ I P+ +T L+ +V + +E+ M+ E
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 320 ---------------------------GFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV 352
G KPD+ F++++D A + A + L +
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 353 EWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIE 412
+ G+ T++Y+ L+ + + ++L L++ +++ ++ P + T NALI + C N++
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736
Query: 413 KAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPD 464
KA + M LGL P+ +YS L+ A + D +++G P+
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 6e-18
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 288 PNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDC 347
P L TFN L+S ++ +L ++ E G K D + ++I ++ + + +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 348 LSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCR 407
EMV GV N T+ LI G VA++ + M++ + PD FNALI + +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 408 MNKIEKAEKAFFSML--TLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC--NP 463
+++A M T + PD+ + AL+KA +G+ D AK+ + + + P
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 464 DSYTSNLILETLVQQGRFEEAHDIVKTSKERGI 496
+ YT + + + Q+G ++ A I K++G+
Sbjct: 615 EVYT--IAVNSCSQKGDWDFALSIYDDMKKKGV 645
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 2e-17
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92
PD TYN LI G C+ G V+EAL+L +M+ G PNVYTY+ILIDG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.1 bits (186), Expect = 3e-17
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 323 PDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC 371
PD T+N++ID C+ + E+AL +EM + G+ PN TY+ILI LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 5e-16
Identities = 67/320 (20%), Positives = 139/320 (43%), Gaps = 10/320 (3%)
Query: 183 PESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242
P STF+ ++ + D++ +L + G+K Y L+ K+G+ V+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK-VDA--- 490
Query: 243 LNHVFKDRLVS----NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLIS 298
+ VF + + + NV+++ +ID + + +A MR +++ P+ V FN LIS
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 299 GHCKDAEVHKTRELLV-MLLECG-FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV 356
+ V + ++L M E PD T +++ A + + A + + E+ +
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 357 PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEK 416
Y I + S GD +L ++ M+ + PD F+AL+ ++KA +
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 417 AFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLV 476
G++ SYS+L+ A + + +A + + ++ P T N ++ L
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 477 QQGRFEEAHDIVKTSKERGI 496
+ + +A +++ K G+
Sbjct: 731 EGNQLPKALEVLSEMKRLGL 750
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 5e-15
Identities = 51/248 (20%), Positives = 117/248 (47%), Gaps = 2/248 (0%)
Query: 251 LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTR 310
++++NM++ +D A + R +++ + + + TLIS K +V
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 311 ELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSL 370
E+ ++ G + + TF ++ID RA + A M V P+ + +N LI +
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 371 CAIGDVARSLRLFQKMQADR--ISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRP 428
G V R+ + +M+A+ I PD T AL+++ ++++A++ + + ++
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 429 DNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIV 488
Y+ + + + G +D A + M++ G PD + +++ G ++A +I+
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 489 KTSKERGI 496
+ ++++GI
Sbjct: 673 QDARKQGI 680
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 3e-14
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 358 PNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCR 407
P+ +TYN LI C G V +L+LF +M+ I P++YT++ LI C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 2e-13
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK 302
+V +YN +ID +CK ++ A ++ EM+ R I PN+ T++ LI G CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 5e-13
Identities = 101/511 (19%), Positives = 188/511 (36%), Gaps = 100/511 (19%)
Query: 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLV 68
RL NA++ V+ + A+ F +M + D F++N+L+ G + G DEAL L
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLY 175
Query: 69 KQMEGLGYAPNVYTYTILI---DGFCNAKRVAEV-FRVLEIMKERNVCPNEATVRSLVHG 124
+M G P+VYT+ ++ G + R EV V+ E +V V +L+
Sbjct: 176 HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV----DVVNALITM 231
Query: 125 VFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE 184
+C D A + +R P + N ++ N E + M + P+
Sbjct: 232 YVKCGDVVSARLVF----DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 185 SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLN 244
L+T + C +L R GR++ G
Sbjct: 288 ----------LMTITSVISACELLG-------DERL-------------GREMHG----- 312
Query: 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA 304
+V K +V+ N +I + + A ++ M +D V++ +ISG+ K+
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNG 368
Query: 305 EVHKTRELLVMLLECGFKPDKFTF-----------------------------------N 329
K E ++ + PD+ T N
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 330 SMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD 389
++I+ + + AL+ + E + I++ +I L +L F++M
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484
Query: 390 RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEA 449
+ P+ T A + + R+ + ++ +L G+ D F +AL+ ++ GR + A
Sbjct: 485 -LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 450 KQTFLSMEQNGCNPDSYTSNLILETLVQQGR 480
F N D + N++L V G+
Sbjct: 544 WNQF-----NSHEKDVVSWNILLTGYVAHGK 569
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 7e-13
Identities = 95/449 (21%), Positives = 171/449 (38%), Gaps = 43/449 (9%)
Query: 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEG 73
NA+I VK + A L F +M D ++N +I G G E L L M
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 74 LGYAPNVYTYTILID--GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDP 131
L P++ T T +I +R+ + + + + SL+ ++ L
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVV--KTGFAVDVSVCNSLIQ-MYLSLGS 338
Query: 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYT 191
E + ME + + ++ N + +A M P+ T
Sbjct: 339 WGEAEKVFSRMETKDA---VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT---- 391
Query: 192 VTCLVTGLDLNETCGILDTFIKR---GVKPRFSTYLLLMEAL---YKAGRDVEGDRYLNH 245
+ + L G LD +K + +Y+++ AL Y + + D+ L
Sbjct: 392 ---IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI--DKALE- 445
Query: 246 VFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305
VF + +V S+ +I N A R+M + PN VT +S +
Sbjct: 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGA 504
Query: 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALD----CLSEMVEWGVPPNTI 361
+ +E+ +L G D F N+++D R R A + ++V W
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW------- 557
Query: 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421
NIL+ A G + ++ LF +M ++PD TF +L+ + R + + + F SM
Sbjct: 558 --NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 422 -LTLGLRPDNFSYSALIKALIKSGRFDEA 449
+ P+ Y+ ++ L ++G+ EA
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEA 644
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 49/230 (21%), Positives = 106/230 (46%), Gaps = 9/230 (3%)
Query: 261 VIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG 320
+ID + K ++ A + M ++ V +N++++G+ + L + + G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 321 FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSL 380
D+FTF+ MI R E A + ++ G P + + L+ G + +
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 381 RLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKAL 440
+F +M ++ ++NALI + + KA + F M+ G+ P++ ++ A++ A
Sbjct: 381 NVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 441 IKSGRFDEAKQTFLSMEQN-GCNPDSYTSNLILETLVQQGRFEEAHDIVK 489
SG ++ + F SM +N P + ++E L ++G +EA+ +++
Sbjct: 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 3e-12
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 393 PDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442
PD+ T+N LI +C+ K+E+A K F M G++P+ ++YS LI L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 78 PNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124
P+V TY LIDG+C +V E ++ MK+R + PN T L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 101/488 (20%), Positives = 190/488 (38%), Gaps = 89/488 (18%)
Query: 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIM 106
TY+ L+ + + + +E G+ P+ Y ++ + + R+ + M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 107 KERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER--EPLTQKLVCNTLLYRLSNNS 164
ERN A+ +++ G+ + +AF L E + + V ++ R S
Sbjct: 185 PERN----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV---VMLRASAGL 237
Query: 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGL--DLNETCGILDTFIKRGVKPRFST 222
++ A L L TG+ D +C ++D + K G
Sbjct: 238 GSARAGQQLH-----------------CCVLKTGVVGDTFVSCALIDMYSKCG------- 273
Query: 223 YLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMR 282
D+E R VF ++N ++ + + A + EMR
Sbjct: 274 -------------DIEDAR---CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 283 DRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFE 342
D ++ + TF+ +I + A + ++ L+ GF D +++D + R E
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 343 DALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402
DA + M N I++N LI G +++ +F++M A+ ++P+ TF A++
Sbjct: 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 403 QSFCRMNKI-EKAEKAFFSML-TLGLRPDNFSYSALIKALIKSGRFDEA---------KQ 451
S CR + + E+ + F SM ++P Y+ +I+ L + G DEA K
Sbjct: 434 -SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492
Query: 452 TF--------------------LSMEQ-NGCNPDSYTSNLILETL-VQQGRFEEAHDIVK 489
T L+ E+ G P+ + ++L L GR EA +V+
Sbjct: 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552
Query: 490 TSKERGIS 497
T K +G+S
Sbjct: 553 TLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 3e-10
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR 57
P YN +ID K ++ A F +M KP+ +TY+ILI G+C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 3e-10
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 41 CKPDRFTYNILIHGICRIGVVDEALRLVKQME 72
KPD TYN LI G+CR G VDEA+ L+ +ME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 91/400 (22%), Positives = 154/400 (38%), Gaps = 89/400 (22%)
Query: 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT 148
C+ ++ + ++LE M+E V +E +L FR + +A E R R +
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVAL----FRLCEWKRAVEEGSRVCSRALSS 115
Query: 149 QKLVCNTLLYRLSNNSMASEAAAILRKMGDR-------GYLPESSTFDYTVTCLVTGLD- 200
+L RL N ++ + + G+ G +PE F + V LV G
Sbjct: 116 H----PSLGVRLGNAMLS-----MFVRFGELVHAWYVFGKMPERDLFSWNV--LVGGYAK 164
Query: 201 ---LNETCGILDTFIKRGVKPRFSTYLLLMEAL-----YKAGRDVEGDRYLNHVFKDRLV 252
+E + + GV+P T+ ++ GR+V HV +
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA-----HVVRFGFE 219
Query: 253 SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTREL 312
+V+ N +I + K + A + M RD +++N +ISG+ ++ E + EL
Sbjct: 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLEL 275
Query: 313 LVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC- 371
+ E PD T S+I S C
Sbjct: 276 FFTMRELSVDPDLMTITSVI------------------------------------SACE 299
Query: 372 AIGDVARSLRLFQKMQADRISP----DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLR 427
+GD RL ++M + D+ N+LIQ + + +AEK F M T
Sbjct: 300 LLGDE----RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---- 351
Query: 428 PDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYT 467
D S++A+I K+G D+A +T+ MEQ+ +PD T
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 7e-09
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 75 GYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMK 107
G P+V TY LIDG C A RV E +L+ M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 9e-09
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 428 PDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETL 475
PD +Y+ LI K G+ +EA + F M++ G P+ YT +++++ L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 4e-08
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 326 FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360
T+N++ID LC+A R E+AL+ EM E G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (115), Expect = 1e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 355 GVPPNTITYNILIRSLCAIGDVARSLRLFQKMQ 387
G+ P+ +TYN LI LC G V ++ L +M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 8/210 (3%)
Query: 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEM 351
T++ L+ + + + + GF+PD++ N ++ + DA EM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 352 VEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKI 411
E N ++ +I L G+ + LF++M D + TF ++++ +
Sbjct: 185 PE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 412 EKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLI 471
++ +L G+ D F ALI K G ++A+ F M + + N +
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSM 296
Query: 472 LETLVQQGRFEEAHDIVKTSKERGISFKSF 501
L G EEA + ++ G+S F
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQF 326
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 60/267 (22%), Positives = 100/267 (37%), Gaps = 47/267 (17%)
Query: 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEA 64
G+ + + A+ID ++ + A+ + M KPDR +N LI + G VD A
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561
Query: 65 LRLVKQM--EGLGYAPNVYTYTILIDGFCNA---KRVAEVFR------------------ 101
++ +M E P+ T L+ NA R EV++
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 102 --------------VLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147
+ + MK++ V P+E +LV D KAFE+L ++
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL-----QDAR 676
Query: 148 TQKLVCNTLLYR-----LSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN 202
Q + T+ Y SN +A + + P ST + +T L G L
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736
Query: 203 ETCGILDTFIKRGVKPRFSTYLLLMEA 229
+ +L + G+ P TY +L+ A
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVA 763
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 8e-07
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 320 GFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV 352
G KPD T+N++ID LCRA R ++A++ L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 329 NSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGD-VARSLRLFQKMQ 387
NS + LC + E AL L M E VP + Y L R LC V R+ +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 388 ADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFD 447
+ S + NA++ F R ++ A F M R D FS++ L+ K+G FD
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM---PER-DLFSWNVLVGGYAKAGYFD 169
Query: 448 EAKQTFLSMEQNGCNPDSYTSNLILET 474
EA + M G PD YT +L T
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRT 196
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE 115
TY LIDG C A RV E + + MKER + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 431 FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS 465
+Y+ LI L K+GR +EA + F M++ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 284 RDIAPNLVTFNTLISGHCKDAEVHKTRELL 313
+ + P++VT+NTLI G C+ V + ELL
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 257 SYNMVIDCFCKVNMMDRATEICREMRDRDIAPN 289
+YN +ID CK ++ A E+ +EM++R I P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 326 FTFNSMIDCLCRAHRFEDALDCLSEMVEWGV 356
T+NS+I C+A + E+AL+ EM E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 396 YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD 429
T+N LI C+ ++E+A + F M G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNV 80
TYN LI G+C+ G V+EAL L K+M+ G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDI 395
+TYN LI LC G V +L LF++M+ I PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 254 NVNSYNMVIDCFCKVNMMDRATEICREMR 282
+V +YN +ID C+ +D A E+ EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 5e-05
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 391 ISPDIYTFNALIQSFCRMNKIEKAEKAF 418
+ PD+ T+N LI CR ++++A +
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.8 bits (104), Expect = 6e-05
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 6/236 (2%)
Query: 223 YLLLMEALYKAGRDVE--GDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICRE 280
L AL + ++ + + ++ K+ ++ A E+ +
Sbjct: 25 LLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK 84
Query: 281 MRDRDIAPNL-VTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAH 339
+ ++ PNL L + + ELL L PD + L
Sbjct: 85 ALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELG 144
Query: 340 RFEDALDCLSEMVEWGVPPNTI--TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYT 397
+E+AL+ + +E N + L L A+G +L L +K D
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204
Query: 398 FNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTF 453
L + ++ K E+A + + L L + + L L++ GR++EA +
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEAL 259
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 8e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 326 FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPP 358
T+N+++ L +A + AL L EM G+ P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 96/463 (20%), Positives = 169/463 (36%), Gaps = 103/463 (22%)
Query: 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQME 72
+ A+I K+ D A + M D PD T ++ +G +D ++L + E
Sbjct: 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416
Query: 73 GLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH 132
G V LI+ + K + + V + E++V + S++ G+ L+ +
Sbjct: 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGL--RLN-N 469
Query: 133 KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA-------AAILRK-MGDRGYLPE 184
+ FE LI F + LT K TL+ LS + A +LR +G G+LP
Sbjct: 470 RCFEALI-FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP- 527
Query: 185 SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLN 244
++ D V C N+ N
Sbjct: 528 NALLDLYVRCGRMNYAWNQ---------------------------------------FN 548
Query: 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA 304
KD V S+N+++ + A E+ M + + P+ VTF +L+ +
Sbjct: 549 SHEKD-----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603
Query: 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYN 364
V + E F+SM + ++ + PN Y
Sbjct: 604 MVTQGLEY---------------FHSMEE-------------------KYSITPNLKHYA 629
Query: 365 ILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMN-KIEKAEKAFFSMLT 423
++ L G + + KM I+PD + AL+ + CR++ +E E A +
Sbjct: 630 CVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA-CRIHRHVELGELA--AQHI 683
Query: 424 LGLRPDNFSYSALIKAL-IKSGRFDEAKQTFLSMEQNGCNPDS 465
L P++ Y L+ L +G++DE + +M +NG D
Sbjct: 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726
|
Length = 857 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (102), Expect = 1e-04
Identities = 33/167 (19%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 331 MIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR 390
+ L ++E+AL+ L + + P+ + + +L +GD +L L++K A
Sbjct: 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK--ALE 158
Query: 391 ISPDIY----TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRF 446
+ P++ AL + + E+A + L L D + L +K G++
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218
Query: 447 DEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493
+EA + + + ++ + L++ GR+EEA + ++ + E
Sbjct: 219 EEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 367 IRSLCAIGDVARSLRLFQKMQAD-RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425
I L A G +L LF+ ++A + T++AL+++ + I + ++ + + G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 426 LRPDNFSYSALIKALIKSGRFDEAKQTFLSM-EQNGCNPDSYTSNLILETLVQQGRFEEA 484
PD + + ++ +K G +A++ F M E+N + I+ LV G + EA
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL-----ASWGTIIGGLVDAGNYREA 208
Query: 485 HDIVK 489
+ +
Sbjct: 209 FALFR 213
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 330 SMIDCLCRAHRFEDALDCLSEMVEWGVP--PNTITYNILIRSLCAIGDVARSLRLFQKMQ 387
S I+ L R +AL+ L E++E G P TY+ L+ + A+ + ++ ++
Sbjct: 92 SQIEKLVACGRHREALE-LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE 150
Query: 388 ADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN--FSYSALIKALIKSGR 445
+ PD Y N ++ + + A + F M P+ S+ +I L+ +G
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGN 204
Query: 446 FDEAKQTFLSMEQNGCNPDSYT 467
+ EA F M ++G + + T
Sbjct: 205 YREAFALFREMWEDGSDAEPRT 226
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 431 FSYSALIKALIKSGRFDEAKQTFLSMEQNGC 461
+Y++LI K+G+ +EA + F M++ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 80 VYTYTILIDGFCNAKRVAEVFRVLEIMKERNV 111
+ TY L+ A VLE MK +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERNV 111
TY LI G+C A ++ E + + MKE+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 396 YTFNALIQSFCRMNKIEKAEKAFFSMLTLGL 426
T+N+LI +C+ K+E+A + F M G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 46 FTYNILIHGICRIGVVDEALRLVKQMEGLG 75
TYN LI G C+ G ++EAL L K+M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISP 393
TYN L+ +L GD +L + ++M+A + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 7e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 425 GLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457
GL+PD +Y+ LI L ++GR DEA + ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 8e-04
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 257 SYNMVIDCFCKVNMMDRATEICREMRDRDI 286
+YN +I +CK ++ A E+ +EM+++ +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 8e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 431 FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP 463
+Y+AL+ AL K+G D A M+ +G P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 291 VTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD 324
VT+NTLI G CK V + EL + E G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAP 78
TYN L+ + + G D AL ++++M+ G P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 395 IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRP 428
+ T+NAL+ + + + A M GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRI 391
+TYN LI C G + +L LF++M+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 438 KALIKSGRFDEAKQTFLSMEQNGCNPDSYTSN---LILETLVQQGRFEEA 484
L KSG + EA+Q F + + N +YT N + E+L QG +E+A
Sbjct: 149 LDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDA 197
|
Length = 262 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV 60
I + + P+ NA+I AL + N + A +M P+ TY+IL+ R
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91
D L L+ Q + G PN+ + G C
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 257 SYNMVIDCFCKVNMMDRATEICREMRDRDIAP 288
+YN ++ K D A + EM+ + P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.87 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.86 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.77 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.75 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.71 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.68 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.67 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.65 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.62 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.6 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.58 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.55 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.54 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.51 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.51 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.51 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.49 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.34 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.25 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.25 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.24 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.23 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.22 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.15 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.13 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.13 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.12 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.12 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.09 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.08 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.03 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.93 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.92 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.91 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.9 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.87 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.83 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.8 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.8 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.75 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.74 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.7 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.64 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.47 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.13 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.05 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.04 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.03 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.02 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.01 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.0 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.0 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.97 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.92 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.9 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.89 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.88 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.88 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.86 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.85 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.84 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.83 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.82 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.81 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.8 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.78 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.77 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.76 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.69 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.63 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.62 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.62 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.62 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.6 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.6 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.57 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.53 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.49 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.47 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.37 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.33 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.2 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.08 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.08 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.97 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.89 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.89 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.84 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.8 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.77 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.76 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.74 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.71 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.68 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.67 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.63 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.57 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.54 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.53 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.46 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.43 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.37 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.36 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.34 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.34 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.33 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.28 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.28 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.2 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.18 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.14 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.06 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.04 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.01 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.71 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.61 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.56 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.53 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.48 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.48 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.38 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.38 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.3 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.11 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.07 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.82 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.75 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.6 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.5 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.37 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.18 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.15 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.12 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.98 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.77 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.71 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.7 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.68 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.66 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.55 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.46 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.93 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.55 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.44 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.4 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.2 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.09 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.03 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.9 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.7 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.63 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.5 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.34 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.27 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.06 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.98 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.53 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.98 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.95 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.85 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.47 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.41 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.38 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.13 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.08 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.04 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.0 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.81 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.76 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.54 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.44 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.41 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.36 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 88.34 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.3 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.28 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.08 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.03 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.91 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.8 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.54 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.1 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.1 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.04 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.95 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.9 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.81 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.71 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.7 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 86.55 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.39 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.56 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.22 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.97 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 84.49 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.33 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.25 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.05 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 83.78 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.28 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.88 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.8 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.77 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.75 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.27 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.12 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.4 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 80.33 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=533.25 Aligned_cols=493 Identities=18% Similarity=0.229 Sum_probs=390.8
Q ss_pred CCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH
Q 048258 3 FLGI-SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVY 81 (504)
Q Consensus 3 ~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 81 (504)
+.|+ +++..+++.++..|.+.|.+++|..+|+.|. .|+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..
T Consensus 398 ~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~ 473 (1060)
T PLN03218 398 KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK 473 (1060)
T ss_pred hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 3443 4555556666666666666666666666665 3777888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHh
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLS 161 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (504)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+..|+..+|+.++.+|+
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888887788888888888888
Q ss_pred cCCChHHHHHHHHHHhh--CCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHH
Q 048258 162 NNSMASEAAAILRKMGD--RGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239 (504)
Q Consensus 162 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (504)
+.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|++.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 88888888888888865 5677888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC
Q 048258 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLEC 319 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (504)
.++|+.|.+.+..||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 048258 320 GFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFN 399 (504)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (504)
|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+
T Consensus 714 g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyn 793 (1060)
T PLN03218 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHc----c-------------------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048258 400 ALIQSFCR----M-------------------NKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 400 ~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
.++..|.+ + +..+.|..+|++|.+.|+.||..+|+.++.+++..+..+.+..+++.|
T Consensus 794 sLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 794 CITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 87755331 1 123567788888888888888888888887777777777777777777
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCC
Q 048258 457 EQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGISFKSF 501 (504)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 501 (504)
...+..|+..+|..+++++.+. .++|..++++|.+.|+.|+..
T Consensus 874 ~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 874 GISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7776777788888888877332 367889999999988888763
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-70 Score=528.44 Aligned_cols=492 Identities=15% Similarity=0.215 Sum_probs=468.2
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhH
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQC-KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTY 83 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 83 (504)
+..++...|..++..+++.|++++|+++|+.|.+.++ +++..+++.++..|.+.|.+++|..+|+.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 3456677899999999999999999999999999885 57788888999999999999999999999974 899999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.+..++..+|+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHh--cCCCccHHHHHHHHHHHHhcCCcHHHHH
Q 048258 164 SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIK--RGVKPRFSTYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (504)
|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++++|.. .++.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 5789999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCC
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGF 321 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (504)
+|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048258 322 KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNAL 401 (504)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (504)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----c-------------------CChhHHHHHHHHHHh
Q 048258 402 IQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----S-------------------GRFDEAKQTFLSMEQ 458 (504)
Q Consensus 402 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~ 458 (504)
+.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876542 1 124679999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048258 459 NGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGISFKS 500 (504)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 500 (504)
.|+.||..+|..++.+++..+..+.+..+++.|...+..|+.
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 999999999999999888999999999999888777766654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-67 Score=521.21 Aligned_cols=469 Identities=17% Similarity=0.222 Sum_probs=295.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHH
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYT 84 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
|+.||..+|++++++|.+.+++..+.+++..+.+.|+.|+..+|+.++.+|++.|+++.|.++|++|. .||..+||
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n 257 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWN 257 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhH
Confidence 34444444433333333333333333333333333334444444555555566666666666666664 24556666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++.+.|+.+.|.+++..+.+.+..++..+|+.++.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLN 244 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (504)
++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..++..++.+|++.|+++.|.++++
T Consensus 338 ~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 338 SWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 66666666666642 45666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (504)
.+.+.+..++..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +..||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 666666666666666666666666666666666666643 3556666666666666666666666666654 35666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 048258 325 KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQS 404 (504)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (504)
..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|+.+ .||..+|+.++.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666654 3566666666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 405 FCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME-QNGCNPDSYTSNLILETLVQQGRFEE 483 (504)
Q Consensus 405 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~ 483 (504)
|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++.+|.+.|++++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 66666666666666666666666666666666666666666666666666666 45666666666666666666666666
Q ss_pred HHHHHHHH
Q 048258 484 AHDIVKTS 491 (504)
Q Consensus 484 a~~~~~~~ 491 (504)
|.+++++|
T Consensus 644 A~~~~~~m 651 (857)
T PLN03077 644 AYNFINKM 651 (857)
T ss_pred HHHHHHHC
Confidence 66666665
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-67 Score=521.75 Aligned_cols=481 Identities=19% Similarity=0.246 Sum_probs=430.8
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh
Q 048258 3 FLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 3 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
+.|..++..++++++..|.+.|+++.|..+|+.|. +||..+|+.++.+|++.|++++|+++|++|...|+.||..+
T Consensus 114 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t 189 (857)
T PLN03077 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189 (857)
T ss_pred HcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 45677888888999999999999999999999998 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN 162 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (504)
|+.++++|+..+++..+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|+++.. ++..+||.++.+|++
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~ 265 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFE 265 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999854 477899999999999
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHH
Q 048258 163 NSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (504)
.|++++|+++|++|...|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC
Q 048258 243 LNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFK 322 (504)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (504)
|+.|. .+|..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+.
T Consensus 346 f~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 346 FSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 99885 46888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048258 323 PDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402 (504)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (504)
|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 9999999999999999999999999988854 4666777777777777777777777777765 3667766666666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC------------------------------CCCcccHHHHHHHHHhcCChhHHHHH
Q 048258 403 QSFCRMNKIEKAEKAFFSMLTLGL------------------------------RPDNFSYSALIKALIKSGRFDEAKQT 452 (504)
Q Consensus 403 ~~~~~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (504)
.+|++.|+++.+.+++..+.+.|+ .||..+|+.++.+|++.|+.++|.++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544444444433 46777899999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCC
Q 048258 453 FLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSK-ERGISFKS 500 (504)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 500 (504)
|++|.+.|+.||..||..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999999999999999999999999999999 67888874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-65 Score=493.18 Aligned_cols=477 Identities=15% Similarity=0.196 Sum_probs=454.5
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHH
Q 048258 6 ISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQ-CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYT 84 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
..++..+|+.++..+.+.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34456689999999999999999999999998764 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.+..++..+|+.++.++...|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 47999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLN 244 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (504)
..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|.+.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 4688999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (504)
.|.+.++.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|+.|.+ ||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864 68
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHH
Q 048258 325 KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQA-DRISPDIYTFNALIQ 403 (504)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 403 (504)
..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-DSYTSNLILETLVQQGRFE 482 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 482 (504)
+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHH
Confidence 999999999999998765 46899999999999999999999999999999764 55 5679999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC
Q 048258 483 EAHDIVKTSKERGISFK 499 (504)
Q Consensus 483 ~a~~~~~~~~~~~~~~~ 499 (504)
+|.++++.|.++|+...
T Consensus 546 ~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 546 EAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHHcCCccC
Confidence 99999999999997543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-63 Score=479.24 Aligned_cols=479 Identities=16% Similarity=0.236 Sum_probs=443.3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHH
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYT 84 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
++.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999997 47999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
.++.+|++.|++++|.++|++|.+.|+.|+..++..++.++.+.|+.+.+.+++..+.+.+..++..+++.++.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLN 244 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (504)
++++|.++|++|.. +|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..+|..++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999974 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (504)
.+.+.+..+|..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999964 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 048258 325 KFTFNSMIDCLCRAHRFEDALDCLSEMVE-WGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQ 403 (504)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (504)
..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|++|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999986 689999999999999999999999999999876 46899999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHH---HHHH--
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRP-DNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS-YTSNLIL---ETLV-- 476 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~---~~~~-- 476 (504)
+|...|+++.|..+++++.+. .| +..+|..++..|++.|++++|.++++.|.+.|+...+ .+|..+. +.+.
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~ 580 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSG 580 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccC
Confidence 999999999999999999865 45 4679999999999999999999999999999975432 2221110 0000
Q ss_pred ------hcCCHHHHHHHHHHHHHcCCCCCC
Q 048258 477 ------QQGRFEEAHDIVKTSKERGISFKS 500 (504)
Q Consensus 477 ------~~g~~~~a~~~~~~~~~~~~~~~~ 500 (504)
...-++...++..+|.+.|+.|+.
T Consensus 581 d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 581 DRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 011245667788888889988874
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=284.60 Aligned_cols=463 Identities=13% Similarity=0.072 Sum_probs=281.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
.++..+.+.|+++.|..+++.+.... ++++.++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 513 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEG 513 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCC
Confidence 34444455555555555555554432 3445555555555666666666666666555443 233444555555555566
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHH
Q 048258 95 RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILR 174 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (504)
++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...++++....+. +...+..++..+...|++++|..+++
T Consensus 514 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666655543 224445555555566666666666666665554443 33445555566666666666666666
Q ss_pred HHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 048258 175 KMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN 254 (504)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (504)
.+.... +.+...+..+..++...|++++|+..++.+.+.. +.+...+..++..+...|++++|...++++.+..+. +
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 668 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-N 668 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C
Confidence 665432 2345566666666666666666666666666543 334555666666666666666666666666655433 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 048258 255 VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC 334 (504)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (504)
...+..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+...+ |+..++..+..+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHH
Confidence 5566666666666666666666666666554 2345556666666666777777777776666553 333555566666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHH
Q 048258 335 LCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKA 414 (504)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 414 (504)
+.+.|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +++...++.+...+...|+ .+|
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHH
Confidence 667777777777777666653 4456666667777777777777777777776653 4456666777777777777 667
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 415 EKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 492 (504)
..+++++.+.. +.+...+..+..++...|++++|..+++++.+.+ +.+..++..++.++.+.|++++|.+++++|+
T Consensus 823 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 823 LEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777776642 2234455666677777777777777777777654 2366677777777777777777777777765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=277.28 Aligned_cols=475 Identities=12% Similarity=0.052 Sum_probs=325.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG------------ 75 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------ 75 (504)
.++..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++.+.+..
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 345666777777777777777777777776554 3445555555556666666666666665554432
Q ss_pred ---------------------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 048258 76 ---------------------YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKA 134 (504)
Q Consensus 76 ---------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (504)
.+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 12344455555555556666666666666655542 22334455555556666666666
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 135 FELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
.+.++++....|. +..++..+...+.+.|+.++|...++++...+. .+...+..++..+...|++++|..+++.+.+.
T Consensus 519 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 519 IQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 6666666555443 445555566666666666666666666655432 24455566666677777777777777776654
Q ss_pred CCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 048258 215 GVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFN 294 (504)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (504)
. +.+...+..++.++...|++++|...++.+.+..+. +...+..+..++.+.|++++|...++++.+.. +.+..++.
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3 445667777777777777777777777777765543 55666677777777777777777777776653 22566777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 048258 295 TLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG 374 (504)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (504)
.+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+.... |+..++..+..++...|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC
Confidence 77777777777777877777777654 3456667777777888888888888888887753 44466777788888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 375 DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+.. +++...+..++..+...|+ .+|+..++
T Consensus 751 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 8888888888887753 5567788888888888888888888888888764 4456778888888888888 77888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048258 455 SMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 496 (504)
++.... +.+..++..++.++...|++++|.++++++.+.+.
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888752 33556777888889999999999999999998763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-25 Score=223.91 Aligned_cols=476 Identities=14% Similarity=0.053 Sum_probs=333.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFT-YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
....+.+.+.|++++|++.|+.+.+.+ +|+... ...........|++++|++.++++.+.. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 445567888999999999999988765 444322 1111122234588999999999998874 4467778888888888
Q ss_pred cCChhhHHHHHHHHHHcCCC--------------------------------CChhhH---------------------H
Q 048258 93 AKRVAEVFRVLEIMKERNVC--------------------------------PNEATV---------------------R 119 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~---------------------~ 119 (504)
.|+.++|++.++++...... |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 99999999998887543210 110000 0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhH----------
Q 048258 120 SLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTF---------- 188 (504)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---------- 188 (504)
.....+...|++++|...|++.+...|. +...+..+...+.+.|++++|+..|++..+..... ....+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 1134456779999999999999888765 56778888899999999999999999987653321 11111
Q ss_pred --HHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 048258 189 --DYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMV----- 261 (504)
Q Consensus 189 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 261 (504)
......+.+.|++++|+..++++.... +.+...+..+...+...|++++|++.|+++++..+. +...+..+
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 122446678899999999999998874 446677888889999999999999999998876544 33332222
Q ss_pred -------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 048258 262 -------------------------------------IDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA 304 (504)
Q Consensus 262 -------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (504)
...+...|++++|++.|++..+..+. +...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 23344678888888888888776433 5666777888888888
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW------------------------------ 354 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------ 354 (504)
++++|...++++.+.... +...+..+...+...++.++|+..++.+...
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999998888888765322 3333222222233344444444433322100
Q ss_pred ---------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 355 ---------GVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 355 ---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
..+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|.+.++.+.+..
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 124455566778888889999999999999998863 4467788889999999999999999999887642
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 048258 426 LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC--NP---DSYTSNLILETLVQQGRFEEAHDIVKTSKE-RGISF 498 (504)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~ 498 (504)
+.+...+..+..++...|++++|.++++++..... +| +...+..++..+...|++++|.+.++++.. .|+.|
T Consensus 668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 22345566778888899999999999999886421 11 224566678888899999999999999864 34443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-24 Score=220.52 Aligned_cols=477 Identities=11% Similarity=0.011 Sum_probs=341.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhH----------------HHHHHHHHhcCCHHHHHHHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTY----------------NILIHGICRIGVVDEALRLVKQM 71 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~ 71 (504)
.|+..+..++..+.+.|+.++|.+.++++.+.. +.+.... ..+...+...|++++|++.|+.+
T Consensus 60 ~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 60 NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 467778889999999999999999999999875 4444432 23344678899999999999999
Q ss_pred HhCCCCCcHHh-HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcc-
Q 048258 72 EGLGYAPNVYT-YTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQ- 149 (504)
Q Consensus 72 ~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 149 (504)
.+.+ +|+... ...........|+.++|++.++++.+.. +.+......+...+...|+.++|++.++++....+...
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 8764 444321 1111222234589999999999999874 33566788889999999999999999998765321100
Q ss_pred ------------------hhHH----------------------------------HHHHHHHhcCCChHHHHHHHHHHh
Q 048258 150 ------------------KLVC----------------------------------NTLLYRLSNNSMASEAAAILRKMG 177 (504)
Q Consensus 150 ------------------~~~~----------------------------------~~l~~~~~~~~~~~~a~~~~~~~~ 177 (504)
...+ ......+...|++++|+..|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000 011344567899999999999988
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc-HH------------HHHHHHHHHHhcCCcHHHHHHHH
Q 048258 178 DRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR-FS------------TYLLLMEALYKAGRDVEGDRYLN 244 (504)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~------------~~~~l~~~~~~~~~~~~a~~~~~ 244 (504)
.... .+...+..+..++.+.|++++|+..|++..+...... .. ........+.+.|++++|...|+
T Consensus 297 ~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 297 RANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7632 2677888899999999999999999999887642221 11 11233556778999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH----------------------------
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTL---------------------------- 296 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------------------- 296 (504)
++.+..+. +...+..+..++...|++++|++.|++..+.... +...+..+
T Consensus 376 ~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 376 QARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 99988755 6777888899999999999999999998876422 23333222
Q ss_pred --------------HHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 048258 297 --------------ISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT 362 (504)
Q Consensus 297 --------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (504)
...+...|++++|.+.+++..+..+ -+...+..+...|.+.|++++|...++++.+.. +.+...
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 2234456888888888888877643 256667778888888888999988888887653 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------------------------CCCCCHHhHHHHHH
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQAD---------------------------------------RISPDIYTFNALIQ 403 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~ 403 (504)
+..+...+...++.++|...++.+... ..+.+...+..+..
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~ 611 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence 333333334444444444444332110 12344556677788
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-DSYTSNLILETLVQQGRFE 482 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 482 (504)
.+...|++++|...|+++++.. +.+...+..++..+...|++++|.+.++.+.+. .| +..+...++.++...|+++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHH
Confidence 8889999999999999999863 335677888889999999999999999988764 34 4556777888889999999
Q ss_pred HHHHHHHHHHHcC
Q 048258 483 EAHDIVKTSKERG 495 (504)
Q Consensus 483 ~a~~~~~~~~~~~ 495 (504)
+|.++++++....
T Consensus 689 eA~~~~~~al~~~ 701 (1157)
T PRK11447 689 AAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHhhhC
Confidence 9999999988753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-24 Score=188.91 Aligned_cols=448 Identities=12% Similarity=0.053 Sum_probs=359.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
..+..-..+.|++..|.+.-...-+.+ +.+......+-..+.+..+.+....--....+.. +.-..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 345556667788888888776665554 4444444555556666667776655555544442 34567899999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL 173 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (504)
|++++|+..++.+.+... -....|..+..++...|+.+.|.+.|.+.++..|. .......+...+...|+..+|...|
T Consensus 130 g~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999999998742 25678999999999999999999999999988664 2233334555566789999999999
Q ss_pred HHHhhCCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 048258 174 RKMGDRGYLPE-SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 174 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (504)
.+..+. .|. ...|+.+...+..+|+...|++-|++..+.. +.-...|..+...|...+.++.|...|.++....+.
T Consensus 208 lkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 208 LKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 888765 333 3468888889999999999999999998863 223578999999999999999999999999987655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 253 SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
...++..+...|-..|.+|.|+..+++..+..+. -...|+.+..++-..|++.+|...|........ .-....+.|.
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLg 361 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLG 361 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHH
Confidence 6778888888899999999999999999887432 467899999999999999999999999987642 3466788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCH
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKI 411 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 411 (504)
..|...|.++.|..+|....+.. +--....+.|...|-++|++++|+..+++.+. +.|+ ...|+.+...|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999998852 22345788999999999999999999999987 4676 45899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhc
Q 048258 412 EKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS-YTSNLILETLVQQ 478 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 478 (504)
+.|.+.+.+++.. .|. ....+.|...|-.+|++.+|++-+++.+. ++||. ..+..++.++.-.
T Consensus 439 ~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHH
Confidence 9999999999985 555 56788999999999999999999999998 46764 4566666655433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-23 Score=182.45 Aligned_cols=407 Identities=12% Similarity=0.083 Sum_probs=339.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
-..+.+..+.+.....-....+.. +.-.++|..+...+-..|++++|+.+++.+.+.. +.....|..+..++...|+.
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~ 166 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDL 166 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCC
Confidence 344555556666555544444443 5567899999999999999999999999999874 34678999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNVCPNEA-TVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+.|.+.|.+..+.+ |+.. ....+...+-..|+.++|...|.+.++..|. -..+|..|...+..+|+...|+..|++
T Consensus 167 ~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 167 ELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred cccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHH
Confidence 99999999999873 4444 4455666667789999999999999988764 567889999999999999999999999
Q ss_pred HhhCCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 048258 176 MGDRGYLPE-SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN 254 (504)
Q Consensus 176 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (504)
.... .|+ ...|-.+...|...+.+++|...|.+..... +....++..+...|..+|..+.|+..|++.++..+. -
T Consensus 244 Avkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F 319 (966)
T KOG4626|consen 244 AVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-F 319 (966)
T ss_pred hhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-c
Confidence 9875 444 4578889999999999999999999988763 445677888899999999999999999999987655 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 048258 255 VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC 334 (504)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (504)
+..|+.+..++-..|+..+|...+.+....... -..+.+.|...|...|.++.|..+|....+.. +--...++.|...
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASI 397 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHH
Confidence 788999999999999999999999999887433 56788999999999999999999999988753 2234578889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHH
Q 048258 335 LCRAHRFEDALDCLSEMVEWGVPPN-TITYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIE 412 (504)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 412 (504)
|-++|++++|+..+++.++. .|+ ...|+.+...|-..|+.+.|.+.+.+++.. .|. ...++.|...|-..|+..
T Consensus 398 ~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcH
Confidence 99999999999999999985 555 458999999999999999999999999985 454 568999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC-cccHHHHHHHH
Q 048258 413 KAEKAFFSMLTLGLRPD-NFSYSALIKAL 440 (504)
Q Consensus 413 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 440 (504)
+|++-|++.++. +|| +..|..++.++
T Consensus 474 ~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 474 EAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 999999999984 677 45666666553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-20 Score=184.39 Aligned_cols=230 Identities=10% Similarity=0.047 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCL 335 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (504)
..|..+..++.. ++.++|+..+.+..... |+......+...+...|++++|...++.+... +|+...+..+..++
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 334444444443 55666776666655542 34333333344446788888888888877554 33444455666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 048258 336 CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAE 415 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 415 (504)
.+.|++++|...+++..+.. +.+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888888764 223333334444455669999999999998875 567778888889999999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 416 KAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
..+++..+.. +.+...+..+..++...|++++|+..+++..+.. +-+...+..++.++...|++++|+..++++.+..
T Consensus 630 ~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 630 SDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999863 3345667788888999999999999999998852 3366788899999999999999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-21 Score=185.47 Aligned_cols=429 Identities=11% Similarity=0.032 Sum_probs=292.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+......+.+.|+++.|+..|++..+. .|++..|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 446677788888999999999888866 5677788888888888899999999888888764 3456778888888888
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
.|++++|+.-|......+...+. ....++..... ..+...........+. +...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhh
Confidence 89998888888766554321121 11222221111 1223333333333322 1111221211 1111111111111
Q ss_pred HHHHhhCCCCCC-hhhHHHHHHH---HHccCChhhHHHHHHHHHhcC-C-CccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 173 LRKMGDRGYLPE-SSTFDYTVTC---LVTGLDLNETCGILDTFIKRG-V-KPRFSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 173 ~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
+....+. .+. ...+..+... ....+++++|.+.++...+.+ . +.....+..+...+...|++++|...++++
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 111 1111111111 123467889999999988764 2 334556788888888999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH
Q 048258 247 FKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (504)
+...+. ....|..+...+...|++++|+..|++..+... .+..++..+...+...|++++|...|++..+... .+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHH
Confidence 887654 566788888888899999999999998887643 3677888888899999999999999999887643 3566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------hHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY------TFNA 400 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~ 400 (504)
.+..+..++.+.|++++|+..|++..+. .+.+...++.+...+...|++++|+..|++..+.....+.. .++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 7777888888999999999999998875 34467788889999999999999999999988753111111 1222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 401 LIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 401 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
....+...|++++|.+++++..+.. |+ ...+..++..+...|++++|+..|++..+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2233445689999999999988753 44 446788889999999999999999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-21 Score=182.79 Aligned_cols=431 Identities=12% Similarity=0.004 Sum_probs=303.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++...+.+ +.+...+..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445677788899999999999998876 5788888889999999999999999999998874 2355688888999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHH
Q 048258 128 CLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
.|++++|...|..+....+..+... ..++..... ..+........... .++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 9999999988877665543322221 112211111 12222222222221 112222222222 2111111111111
Q ss_pred HHHHHhcCCCcc-HHHHHHHHHHH---HhcCCcHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 208 LDTFIKRGVKPR-FSTYLLLMEAL---YKAGRDVEGDRYLNHVFKDRL--VSNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 208 ~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
+....+. .+. ...+..+...+ ...+++++|.+.|+.++..+. +.....+..+..++...|++++|+..+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 111 11111111111 234689999999999987642 224567888888899999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 048258 282 RDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI 361 (504)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (504)
.+..+. +...|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|+..|++..+.. +.+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 887432 46678888889999999999999999998764 3467888899999999999999999999999874 44677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccc------HHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS------YSA 435 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~ 435 (504)
.+..+..++.+.|++++|+..+++..+.. +.+...++.+...+...|++++|...|++.++.....+... ++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 78889999999999999999999998752 44577899999999999999999999999998532111111 111
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
....+...|++++|.+++++..... +.+...+..++.++.+.|++++|.++++++.+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1222334699999999999998753 2345578889999999999999999999987653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-22 Score=181.52 Aligned_cols=298 Identities=12% Similarity=0.094 Sum_probs=158.2
Q ss_pred HccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHH
Q 048258 196 VTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN---VNSYNMVIDCFCKVNMMD 272 (504)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 272 (504)
...|++++|+..++++.+.+ +.+..++..++..+...|++++|..+++.+......++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444432 22333444455555555555555555555444321111 123445555555556666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 273 RATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD----KFTFNSMIDCLCRAHRFEDALDCL 348 (504)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 348 (504)
+|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666665555432 22444555555555566666666666655554432221 112334445555666666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 048258 349 SEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRP 428 (504)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 428 (504)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 6666542 22344555566666666666666666666665421111334556666666666666666666666654 34
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCC
Q 048258 429 DNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQ---QGRFEEAHDIVKTSKERGISFKS 500 (504)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 500 (504)
+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+..++..+++++.++++.|++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4445555666666666666666666666653 4555555555555443 34666666666666665554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-20 Score=178.64 Aligned_cols=332 Identities=13% Similarity=0.035 Sum_probs=267.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
..++..+.+.|+++.|..+++...... +.+...+..++.+....|+++.|+..++++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 346778889999999999999998776 4456666667777788999999999999998874 44677888888999999
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL 173 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (504)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+....|.+.. .+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998863 335667888889999999999999999988877765443 33333 3477889999999999
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHH----HHHHHHHHHhC
Q 048258 174 RKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVE----GDRYLNHVFKD 249 (504)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 249 (504)
+.+......++......+...+...|++++|+..++.+.... +.+...+..+...+...|++++ |...++++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 998776433444455566778889999999999999998874 5567788889999999999886 78999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccH-HHH
Q 048258 250 RLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDK-FTF 328 (504)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 328 (504)
.+. +...+..+...+...|++++|+..+++.....+. +...+..+...+.+.|++++|...++.+.+.+ |+. ..+
T Consensus 280 ~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 NSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 765 7788889999999999999999999998887533 56677788889999999999999999988764 333 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048258 329 NSMIDCLCRAHRFEDALDCLSEMVEWG 355 (504)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (504)
..+..++...|++++|...|++..+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445667889999999999999988763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-21 Score=178.62 Aligned_cols=298 Identities=12% Similarity=0.037 Sum_probs=148.5
Q ss_pred hcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHccCChhh
Q 048258 127 RCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE---SSTFDYTVTCLVTGLDLNE 203 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 203 (504)
..|++++|...|+++.+..|. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 334444444444444433322 223333344444444444444444444433211110 1223334444444444444
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048258 204 TCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN----VNSYNMVIDCFCKVNMMDRATEICR 279 (504)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (504)
|...++.+.+.. +.+..++..++..+...|++++|.+.++.+.+.++.+. ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444331 22334444445555555555555555555444332211 1123344455556666666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048258 280 EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359 (504)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (504)
++.+... .+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+. .|+
T Consensus 205 ~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 281 (389)
T PRK11788 205 KALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPG 281 (389)
T ss_pred HHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 6655431 1334555555666666666666666666655432222344555666666666666666666666654 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCcc
Q 048258 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCR---MNKIEKAEKAFFSMLTLGLRPDNF 431 (504)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 431 (504)
...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 444556666666666666666666666554 4565566655555443 345666666666666655555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-19 Score=178.19 Aligned_cols=419 Identities=10% Similarity=0.006 Sum_probs=232.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.-.+....-.|+.++|+++|....... +.+...+..+...+...|++++|.+++++..+.. +.+...+..+..++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334445555556666665555555422 3344445555555555566666666666555442 22344445555555555
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL 173 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (504)
|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..|. +...+..+...+...+..++|++.+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 66666666665555542 12333 555555555555556666555555555544 3333333444455555555555555
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHH-----HhcCCc---HHHHHHHHH
Q 048258 174 RKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEAL-----YKAGRD---VEGDRYLNH 245 (504)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~~~~~~ 245 (504)
+.... .|+.... . ........+... ...+++ ++|++.++.
T Consensus 174 ~~~~~---~p~~~~~---------------------------l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 174 DDANL---TPAEKRD---------------------------L--EADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HhCCC---CHHHHHH---------------------------H--HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 44432 1110000 0 000011111111 111122 556666666
Q ss_pred HHhCC-CCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhcCCchHHHHHHHHHHHH
Q 048258 246 VFKDR-LVSNVN-SY----NMVIDCFCKVNMMDRATEICREMRDRDIA-PNLVTFNTLISGHCKDAEVHKTRELLVMLLE 318 (504)
Q Consensus 246 ~~~~~-~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (504)
+.+.. ..|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 66431 111111 11 11123345667788888888887766432 221 222245677777888888888877765
Q ss_pred CCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHH
Q 048258 319 CGFKP---DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-----------PPN---TITYNILIRSLCAIGDVARSLR 381 (504)
Q Consensus 319 ~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~ 381 (504)
..... .......+..++...|++++|...++.+..... .|+ ...+..+...+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 43211 123445555567778888888888887776421 122 1234556677778888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 048258 382 LFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 460 (504)
.++++.... +.+...+..++..+...|++++|++.++++.+. .|+ ...+...+..+...|++++|..+++++++.
T Consensus 381 ~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~- 456 (765)
T PRK10049 381 RARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR- 456 (765)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 888887753 445667788888888888888888888888875 455 445556666777888888888888888874
Q ss_pred CCCChhhHHHHHHHH
Q 048258 461 CNPDSYTSNLILETL 475 (504)
Q Consensus 461 ~~~~~~~~~~l~~~~ 475 (504)
.|+......+-+.+
T Consensus 457 -~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 -EPQDPGVQRLARAR 470 (765)
T ss_pred -CCCCHHHHHHHHHH
Confidence 56655544444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-20 Score=175.80 Aligned_cols=361 Identities=11% Similarity=0.016 Sum_probs=288.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
.+.++.+|+.---.|....++. -..+......++..+.+.|+++.|+.+++...... +-+...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 3567788888777776665432 11233345566778889999999999999998874 33455666666777889999
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKM 176 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (504)
++|...++++.+.. +.+...+..+...+...|++++|...+++.....|. +...+..+...+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999999874 235667888899999999999999999999988665 6678888899999999999999999988
Q ss_pred hhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHH
Q 048258 177 GDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVN 256 (504)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (504)
...... +...+..+ ..+...|++++|...++.+......++......++..+...|++++|...++.+....+. +..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH
Confidence 765333 22333333 347889999999999999887753344455566678889999999999999999987655 778
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 257 SYNMVIDCFCKVNMMDR----ATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
.+..+...+...|++++ |+..|+......+ .+...+..+...+...|++++|...++...+... .+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 88889999999999986 8999999988753 3677888999999999999999999999988653 3566777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNT-ITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
.++.+.|++++|+..++.+.... |+. ..+..+..++...|+.++|...|+++.+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999999999998863 343 34445677889999999999999999876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-19 Score=175.26 Aligned_cols=392 Identities=12% Similarity=0.015 Sum_probs=234.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...+..+...+.+.|++++|..+|++..+.. +.+...+..+...+...|++++|+..++++.+.. +.+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 445568899999999999999999999998775 6678888889999999999999999999998874 44666 88888
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcch----hHHHHHHHHHhcC
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQK----LVCNTLLYRLSNN 163 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 163 (504)
.++...|+.++|+..++++.+... .+...+..+..++...+..+.|++.++.+.. .|.... ......+......
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999998743 3555667788888889999999999987665 221000 0111122211111
Q ss_pred -----CCh---HHHHHHHHHHhhC-CCCCChhh-HH----HHHHHHHccCChhhHHHHHHHHHhcCCC-ccHHHHHHHHH
Q 048258 164 -----SMA---SEAAAILRKMGDR-GYLPESST-FD----YTVTCLVTGLDLNETCGILDTFIKRGVK-PRFSTYLLLME 228 (504)
Q Consensus 164 -----~~~---~~a~~~~~~~~~~-~~~~~~~~-~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 228 (504)
+++ ++|++.++.+... ...|+... +. ..+..+...|++++|+..|+.+.+.+.+ |+ .....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHH
Confidence 112 4445555554432 11111110 10 0022233344444555555444443311 11 11111233
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc
Q 048258 229 ALYKAGRDVEGDRYLNHVFKDRLVS---NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (504)
.+...|++++|...|+.+.+..+.. .......+..++...|++++|..+++.+....+ +....+..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P-~~~~~~~~---------- 349 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP-PFLRLYGS---------- 349 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC-ceEeecCC----------
Confidence 4444444444444444444332211 012223333334444444444444444443311 00000000
Q ss_pred hHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPD---KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRL 382 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 382 (504)
....|+ ...+..+...+...|+.++|+..++++.... +.+...+..+...+...|++++|++.
T Consensus 350 -------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 350 -------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred -------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 000122 1234455666777888888888888877753 44666777777888888888888888
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH
Q 048258 383 FQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSY 433 (504)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 433 (504)
++++.+.. +.+...+...+..+...|++++|..+++++++. .|+....
T Consensus 416 l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~ 463 (765)
T PRK10049 416 LKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGV 463 (765)
T ss_pred HHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 88887753 333556666666777788888888888888874 4554433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-20 Score=167.92 Aligned_cols=445 Identities=12% Similarity=0.078 Sum_probs=282.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCK--PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
-|+.+.+.|...+...|++..+..+.+.+...... .-...|-.+.++|...|++++|...|.+..+..-..-...+..
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46667777777777777777777777777654211 1233466677777777888888777777776531111334455
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCcchhHHHHHHHHHh
Q 048258 86 LIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL----DPHKAFELLIRFMEREPLTQKLVCNTLLYRLS 161 (504)
Q Consensus 86 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (504)
+.+.|.+.|+.+.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.+.....+. +...|-.+...+-
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHH
Confidence 6777777777788777777777663 234445555666665554 445666666666655433 5566666665554
Q ss_pred cCCChHHHHHHHHHHh----hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc---CCC------ccHHHHHHHHH
Q 048258 162 NNSMASEAAAILRKMG----DRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR---GVK------PRFSTYLLLME 228 (504)
Q Consensus 162 ~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~ 228 (504)
..+-+.. +..|.... ..+..+.+...|.+.......|+++.|.+.|...... ... +...+-..+..
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 4443333 55555432 3344466677777777777778888887777776654 112 22234555666
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHH
Q 048258 229 ALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHK 308 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (504)
.+-..++.+.|.+.|..+.+..|. -+..|-.++......++..+|...++.....+ ..++..+..+...+.+...+..
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 666777777777877777776543 34444444433334566777777777776653 2355666666667777777777
Q ss_pred HHHHHHHHHHC-CCCccHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 048258 309 TRELLVMLLEC-GFKPDKFTFNSMIDCLCR------------AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGD 375 (504)
Q Consensus 309 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (504)
|.+-|+.+.+. ...+|..+.-.|.+.|.+ .+..++|+++|.+.++.. +.|...-|.+..+++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC
Confidence 77766665432 223466666666665432 234567777777777764 4466667777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 376 VARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG-LRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
+.+|..+|.++.+.. .....+|..+.++|..+|++..|.++|+...+.- ...+..+...|..++.+.|.+.+|.+.+.
T Consensus 662 ~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 662 FSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred chHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888888888877753 2245567777778888888888888887766542 23345666777777778888888877777
Q ss_pred HHHhc
Q 048258 455 SMEQN 459 (504)
Q Consensus 455 ~~~~~ 459 (504)
.....
T Consensus 741 ~a~~~ 745 (1018)
T KOG2002|consen 741 KARHL 745 (1018)
T ss_pred HHHHh
Confidence 66654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-18 Score=171.09 Aligned_cols=469 Identities=11% Similarity=-0.003 Sum_probs=333.9
Q ss_pred CChhhHHHH-HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 8 PSTRLYNAV-IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR-IGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 8 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
|++.+.... .+.|.+.|+++.|+.++.++.+.+ +.+......+..+|.. .++ +.+..++.. ..+.+...+..
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~a 252 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRIT 252 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHH
Confidence 344444444 899999999999999999999887 5566667778788887 466 888887553 22357888999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCC-CChhhHH------------------------------HHHHHHHhcCChHHH
Q 048258 86 LIDGFCNAKRVAEVFRVLEIMKERNVC-PNEATVR------------------------------SLVHGVFRCLDPHKA 134 (504)
Q Consensus 86 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------------~l~~~~~~~~~~~~a 134 (504)
+.+.|.+.|+.++|.++++++...-.. |...++. .++..+.+.++++.+
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999887654211 2222221 123445555666555
Q ss_pred HHHHHH-----------------------------HHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhC--CCCC
Q 048258 135 FELLIR-----------------------------FMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDR--GYLP 183 (504)
Q Consensus 135 ~~~~~~-----------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~ 183 (504)
.++..- +....+ .+.....-+.......|+.++|.++|+..... ...+
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 444210 000001 01111222223345678899999999887662 1223
Q ss_pred ChhhHHHHHHHHHccCCh---hhHHHH----------------------HHHHHhc-C-CCc--cHHHHHHHHHHHHhcC
Q 048258 184 ESSTFDYTVTCLVTGLDL---NETCGI----------------------LDTFIKR-G-VKP--RFSTYLLLMEALYKAG 234 (504)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~---~~a~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~ 234 (504)
+......++..|.+.+.. ..+..+ ++..... + .++ +...+..+..++.. +
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C
Confidence 344445677777776552 222222 2222211 1 134 66778888888877 8
Q ss_pred CcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHH
Q 048258 235 RDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLV 314 (504)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (504)
+..+|...+.......+ +......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999998888877653 3333334455557899999999999998665 3444556677788899999999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048258 315 MLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD 394 (504)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (504)
...+... .+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++..+.. +.+
T Consensus 567 qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~ 642 (987)
T PRK09782 567 QAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNN 642 (987)
T ss_pred HHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 9988642 23333334444455669999999999999986 4578889999999999999999999999999874 445
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHH
Q 048258 395 IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS-YTSNLILE 473 (504)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 473 (504)
...++.+..++...|++++|+..++++.+.. +-+...+..+..++...|++++|...+++..+. .|+. .+......
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~ 719 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPE 719 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhH
Confidence 6788888899999999999999999999863 334677889999999999999999999999985 5644 56677778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 048258 474 TLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 474 ~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
...+..+++.|.+-+++....+
T Consensus 720 ~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 720 QNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888888888888877644
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-19 Score=166.78 Aligned_cols=445 Identities=9% Similarity=0.041 Sum_probs=272.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYA--PNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
|+.+.+.|...|.-.|++..+.++.+.+...... .-...|..+.++|-..|++++|...|.+..+....--...+..+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 4444455555555555555555555555443200 11223455555555566666666665555544211112233445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC----ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS----MASEAAAILRKMGDRGYLPESSTFDYTVTCLVT 197 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (504)
...+.+.|+.+.+...|+.+....|. +..+...+...|...+ ..+.|..++.+....- ..|...|-.+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 55556666666666666665555443 3334444444444432 2344444444444432 1244455444444443
Q ss_pred cCChhhHHHHHHHHH----hcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC---CCCCCH------HHHHHHHHH
Q 048258 198 GLDLNETCGILDTFI----KRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD---RLVSNV------NSYNMVIDC 264 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~ 264 (504)
..-+.. +..|..+. ..+..+.+...+.++..+...|.++.|...|...... ...++. .+-..+..+
T Consensus 427 ~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 333322 54444333 2344455666777777777777777777777666543 111111 123334455
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 048258 265 FCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDA 344 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (504)
.-..++.+.|.+.|+.+....+ .-...|..+.......+...+|...+....... ..++..+..+...+.....+..|
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccc
Confidence 5556677777777777766521 122334444333334566777777777776543 33566666677778888888888
Q ss_pred HHHHHHHHHCC-CCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCH
Q 048258 345 LDCLSEMVEWG-VPPNTITYNILIRSLCA------------IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKI 411 (504)
Q Consensus 345 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (504)
.+-|..+.+.- ..+|+.+...|.+.|.. .+..++|+++|.+++... +.|...-|.+..+++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCc
Confidence 88777665432 23566666667765543 235678999999998874 55778888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 412 EKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC-NPDSYTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
.+|..+|.+..+.. .-...+|-.+..+|..+|++..|+++|+.....-. .-+..+...|++++.+.|.+.+|.+.+..
T Consensus 663 ~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999874 33567888999999999999999999999886533 34678899999999999999999999988
Q ss_pred HHHcC
Q 048258 491 SKERG 495 (504)
Q Consensus 491 ~~~~~ 495 (504)
+....
T Consensus 742 a~~~~ 746 (1018)
T KOG2002|consen 742 ARHLA 746 (1018)
T ss_pred HHHhC
Confidence 87754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-18 Score=163.13 Aligned_cols=440 Identities=10% Similarity=0.028 Sum_probs=219.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPD-RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
+-...+.|+++.|+..|+++.+.. +.+ +..+ .++..+...|+.++|+..+++..... +........+...+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 334556666666666666666553 222 1223 55556666666666666666665211 1122223333445556666
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+++|+++|+++.+... .++..+..++..+...++.++|++.++++....+. ...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 6666666666666532 23445555566666666666666666666655443 22223333333334444446666666
Q ss_pred HhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHH--HHHHHHHHhcC---------C---cHHHHH
Q 048258 176 MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTY--LLLMEALYKAG---------R---DVEGDR 241 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~---------~---~~~a~~ 241 (504)
+.+... .+...+..+..++.+.|-...|.++.++-... +.+..... ...+.-..+.+ + .+.|+.
T Consensus 195 ll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 665531 14445555666666666666666555442221 11111111 00011111111 1 122333
Q ss_pred HHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 242 YLNHVFKDR-LVSN-----VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 242 ~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
-++.+...- ..|. .....-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..++..
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 333333211 1111 1111223445555666666666666666555443344555666666666666666666666
Q ss_pred HHHCCC-----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCh--h-hHHHHHHHHHhcCCH
Q 048258 316 LLECGF-----KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-----------PPNT--I-TYNILIRSLCAIGDV 376 (504)
Q Consensus 316 ~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~--~-~~~~l~~~~~~~g~~ 376 (504)
+..... .++......|.-++...+++++|..+++.+.+... .|+. . .+..++..+.-.|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 544321 12222334555566666666666666666655211 0111 1 123344455556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 048258 377 ARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLS 455 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (504)
.+|++.++++.... +-|......+...+...|.+.+|++.++.+... .|+ ..+....+.++...|++++|..+.+.
T Consensus 433 ~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 66666666665542 445556666666666666666666666554443 333 33344555555566666666666666
Q ss_pred HHhcCCCCChhhHH
Q 048258 456 MEQNGCNPDSYTSN 469 (504)
Q Consensus 456 ~~~~~~~~~~~~~~ 469 (504)
+.+. .|+.....
T Consensus 510 l~~~--~Pe~~~~~ 521 (822)
T PRK14574 510 VISR--SPEDIPSQ 521 (822)
T ss_pred HHhh--CCCchhHH
Confidence 6653 44444333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-18 Score=161.19 Aligned_cols=431 Identities=11% Similarity=0.042 Sum_probs=324.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcH--HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNV--YTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLD 130 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (504)
-...++|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... ..........+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 34578999999999999999874 443 344 7888888999999999999999832 12233344445678889999
Q ss_pred hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 048258 131 PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDT 210 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (504)
+++|+++|+++.+..|.. ...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999998874 666677888999999999999999999876 45555555555555556777679999999
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHH------HHHHHHHH---H--hcC---CHHHHHH
Q 048258 211 FIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNS------YNMVIDCF---C--KVN---MMDRATE 276 (504)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~--~~~---~~~~a~~ 276 (504)
+.+.. +.+...+..+..++.+.|-...|.+...+-...- .+.... ....++.- . ... -.+.|+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 99985 5578888999999999999998887766543211 111110 01111100 0 112 2456667
Q ss_pred HHHHHHhC-CCCCCh-hhH----HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 277 ICREMRDR-DIAPNL-VTF----NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSE 350 (504)
Q Consensus 277 ~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (504)
-++.+... +..|.. ..| .-.+-++...+++.++++.|+.+...+.+....+-..+..+|...+++++|+.+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 77776653 122322 222 233457788999999999999999888766677888999999999999999999999
Q ss_pred HHHCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC--H-HhHHHHHHHHHccCCH
Q 048258 351 MVEWG-----VPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRI-----------SPD--I-YTFNALIQSFCRMNKI 411 (504)
Q Consensus 351 ~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~~~~g~~ 411 (504)
+.... .+++......|.-++...+++++|..+++++.+... .|+ - ..+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 97643 123444457899999999999999999999987311 122 2 2445567778899999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 412 EKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-DSYTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
.+|++.++++.... +-|......+.+.+...|.+.+|.+.++.+... .| +..+....+.++...|++++|..+...
T Consensus 433 ~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999998864 557788889999999999999999999887764 45 566777888999999999999999988
Q ss_pred HHHcC
Q 048258 491 SKERG 495 (504)
Q Consensus 491 ~~~~~ 495 (504)
+.+..
T Consensus 510 l~~~~ 514 (822)
T PRK14574 510 VISRS 514 (822)
T ss_pred HHhhC
Confidence 87653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-19 Score=147.99 Aligned_cols=461 Identities=12% Similarity=0.094 Sum_probs=323.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCC----cHHhHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYN-ILIHGICRIGVVDEALRLVKQMEGLGYAP----NVYTYT 84 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~ 84 (504)
-.++..+...|.....+.+|+..|+-+.+...-|+..... .+...+.+...+.+|+++|+-....-... .....+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 3445567788888889999999999999876667665543 35667888899999999998776542111 133455
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------------cchhH
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL------------TQKLV 152 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~ 152 (504)
.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+++..... |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 6666678999999999999999887 578777777777888899999999999998864322 12222
Q ss_pred HHHHH-----HHHhcCCC--hHHHHHHHHHHhhCCCCCChhh-------------HH--------HHHHHHHccCChhhH
Q 048258 153 CNTLL-----YRLSNNSM--ASEAAAILRKMGDRGYLPESST-------------FD--------YTVTCLVTGLDLNET 204 (504)
Q Consensus 153 ~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~-------------~~--------~l~~~~~~~~~~~~a 204 (504)
.+..+ .-+-+.+. .++++-.-.++...-+.|+... +. .-...+.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22221 11111111 1222222222222222233110 00 112357788999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHh--cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYK--AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
+++++-..+...+.-...-+.+...+.- -.++..|.++.+..+..+-. +......-.+.....|++++|.+.|++..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9999988876544444444444333333 34577777777766644322 33333332333445789999999999998
Q ss_pred hCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 048258 283 DRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT 362 (504)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (504)
..+..-....| .+.-.+...|+.++|++.|-++... +..+..++-.+.+.|....+..+|++++.+.... ++.|+..
T Consensus 518 ~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred cCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 76322111222 2233467789999999999877543 1237778888899999999999999999998876 6889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALI- 441 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 441 (504)
..-|...|-+.|+-..|.+.+-+--.- ++.+..+...|...|....-++++..+|++..- +.|+..-|..++..|.
T Consensus 595 lskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence 999999999999999999887665543 567888988899889999999999999998876 5899999988776655
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 048258 442 KSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGR 480 (504)
Q Consensus 442 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 480 (504)
+.|++++|.++++....+ ++.|...+..|++.+...|.
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 689999999999999876 67788888888888877663
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-15 Score=133.20 Aligned_cols=461 Identities=11% Similarity=0.046 Sum_probs=353.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhh
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAE 98 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 98 (504)
+.....+.+.|+-++.++.+.- +.+...|. ++.+...|+.|..++++..+. ++.+..+|......--+.|+.+.
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHH
Confidence 3444566667888888877653 44555444 455667889999999998875 57788888887777778898888
Q ss_pred HHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--chhHHHHHHHHHhcCCChHHHHHH
Q 048258 99 VFRVLEIMK----ERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT--QKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 99 a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
..+++.+-. ..|+..+...|..=...+-..|..-.+..+...++..+... ...+|+.-...|.+.+.++-|..+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 888876553 45777888888888888888888888888888888776543 345888888889999999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 048258 173 LRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (504)
|...++- +.-+...|......--..|..++...++++.... .+.....+...+..+-..|+...|..++..+.+..+.
T Consensus 539 ya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 539 YAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 9888764 2224556666666666678889999999988886 3445566777778888889999999999999988766
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 253 SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
+...|-..+.....+.+++.|..+|.+.... .|+...|.--+..-.-.++.++|.+++++..+. ++.-...|..+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLG 692 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHh
Confidence 8888888888888999999999999888765 456677766666666778899999999888875 333456777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHH
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIE 412 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 412 (504)
+.+-+.++.+.|...|..-.+. .+..+..|-.+...-.+.|.+-.|..++++....+ +.+...|...|+.-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHH
Confidence 8888889999998888877765 45566678888888888889999999999888765 557778888888888999999
Q ss_pred HHHHHHHHHHhC----C-------------------------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 048258 413 KAEKAFFSMLTL----G-------------------------LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP 463 (504)
Q Consensus 413 ~a~~~~~~~~~~----~-------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 463 (504)
.|..+..++++. | ...|+.....+...+....++++|++.|.+.+..+ +.
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d 849 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PD 849 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence 888877666542 1 12344555566666667778888888888888753 33
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 464 DSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
...+|..+...+.+.|.-++-.++++.....
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 5667888888888888888888888877764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-15 Score=130.65 Aligned_cols=443 Identities=12% Similarity=0.027 Sum_probs=291.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCcHHhHHHHHHHHHhc
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQM----EGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
-+|.+..-|+.|..++....+. ++.+...|.+-...--.+|+.+...+++.+- ...|+..+...|..=...|-..
T Consensus 414 lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 4566667778888888777654 3667777777666666778777777766653 3446667777777666667777
Q ss_pred CChhhHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNE--ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAA 171 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (504)
|..-.+..+.......|+.-.. .+|..-...|.+.+.++-|..+|...++..|. ....|......--..|..++...
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHH
Confidence 7777777777777666654322 36666667777777777777777777766554 55566666666666677777777
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 048258 172 ILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRL 251 (504)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (504)
+|++....- +-....|......+-..|+...|..++..+.+.. +.+...+...+........++.|..+|.+....
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 777776542 1133344455555566677777777777777664 335666777777777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHH
Q 048258 252 VSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSM 331 (504)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (504)
.++..+|..-+...--.++.++|++++++..+. ++.-...|-.+.+.+.+.++++.|.+.|..-.+. .+.....|-.+
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHH
Confidence 345555655555555567777777777666654 2222345556666666677777777666654433 23344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------
Q 048258 332 IDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD---------------------- 389 (504)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------- 389 (504)
...-.+.|.+-.|..+++...-.+ +.+...|...++.-.+.|+.+.|..+..++.+.
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 555556667777777777766654 336666777777777777777776666555432
Q ss_pred -------CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 048258 390 -------RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCN 462 (504)
Q Consensus 390 -------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 462 (504)
....|+.....+...+....++++|.+.|.+.++.+ +.+..+|..+...+.+.|.-+.-.+++...... .
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--E 881 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--E 881 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--C
Confidence 023355566677777888889999999999999874 334678888889999999988889999988874 4
Q ss_pred CC-hhhHHHHH
Q 048258 463 PD-SYTSNLIL 472 (504)
Q Consensus 463 ~~-~~~~~~l~ 472 (504)
|. ...|..+-
T Consensus 882 P~hG~~W~avS 892 (913)
T KOG0495|consen 882 PTHGELWQAVS 892 (913)
T ss_pred CCCCcHHHHHh
Confidence 53 33454443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-15 Score=124.96 Aligned_cols=471 Identities=13% Similarity=0.061 Sum_probs=337.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+...|-.....-..++++..|.++|++++.-+ ..+...|...+.+-.++.+...|..++++....-...| ..|.-.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 44566667777778889999999999998776 66788888888888999999999999999887632222 24444454
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHH
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (504)
.--..|++..|.++|++-.+. .|+...|.+.+..-.+.+.++.|..+|+++.--. |++..|-.....--++|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHH
Confidence 555679999999999998876 7899999999999999999999999999988764 567777777777788999999
Q ss_pred HHHHHHHHhhCCCC--CChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCcHHHHH----
Q 048258 169 AAAILRKMGDRGYL--PESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR-FSTYLLLMEALYKAGRDVEGDR---- 241 (504)
Q Consensus 169 a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~---- 241 (504)
+..+|....+.-.. -+...+......-..+..++.|.-+|+-.++.-.+.. ...|..+...--+-|+......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999887653110 1122334444444456778888888888887632222 3344444444444555433322
Q ss_pred ----HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHH--------HHhcCCchH
Q 048258 242 ----YLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNL--VTFNTLIS--------GHCKDAEVH 307 (504)
Q Consensus 242 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~ 307 (504)
-|+..++.++. |-.+|-..+..-...|+.+...++|+..... ++|-. ..|...|- .-....+.+
T Consensus 306 KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 24555555544 7778888888888889999999999988865 34321 12222221 112467888
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048258 308 KTRELLVMLLECGFKPDKFTFNSMIDCL----CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLF 383 (504)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 383 (504)
.+.+++...++. ++....||..+--.| .++.+...|.+++...+. ..|...+|...|..-.+.++++.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999888874 444555665544333 467888999999988875 4678888999999999999999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 048258 384 QKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG-LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCN 462 (504)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 462 (504)
++.++-+ +-+..+|......-...|+.+.|..+|.-+++.. +......|...|+.-...|.+++|..+++++++. .
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t 537 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--T 537 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--c
Confidence 9999874 4467788888777788899999999999888742 1112345666677667889999999999999875 4
Q ss_pred CChhhHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 048258 463 PDSYTSNLILETLV-----QQG-----------RFEEAHDIVKTSKE 493 (504)
Q Consensus 463 ~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~ 493 (504)
+...+|...+..-. +.+ ....|+++|+++..
T Consensus 538 ~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 538 QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 45556666554333 234 56778888887754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-15 Score=128.05 Aligned_cols=343 Identities=14% Similarity=0.168 Sum_probs=227.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 048258 113 PNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTV 192 (504)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (504)
-++.++..+|.++++.-..+.|.+++++...........+||.+|.+-.-... .+++.+|....+.||..|||.++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 36677888888888888888888888888877777788888888765443322 67778888888888888888888
Q ss_pred HHHHccCChhh----HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHH-HHHHHHHHHhC----CC----CCCHHHHH
Q 048258 193 TCLVTGLDLNE----TCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVE-GDRYLNHVFKD----RL----VSNVNSYN 259 (504)
Q Consensus 193 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~~ 259 (504)
.+..+.|+++. |.+++.+|.+.|+.|+..+|..++..+.+.++..+ +..++..+... .. +.+...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 88888887765 45677788888888888888888888887777644 34444444321 11 12445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDRD----IAPN---LVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
..+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+..+.|+....+.....|+.|.-.-+.|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 67777778888888877766554431 2222 2335566667777788888888888887776777888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CH--------H-----HHHHHH-------HHHHhCCC
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG-DV--------A-----RSLRLF-------QKMQADRI 391 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~a~~~~-------~~~~~~~~ 391 (504)
++....+.++-.-++|.++...|..-+......++..+++.. +. . -|..++ .++.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 888888888888888888877664333333333333333322 11 0 011111 122222
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCcccHH---HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 048258 392 SPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG-LRPDNFSYS---ALIKALIKSGRFDEAKQTFLSMEQNGC 461 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~ 461 (504)
.......+..+-.+.+.|+.++|.+++.-+.+.+ --|-....+ -+++...+.++...|..+++-|...+.
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3344455666666778888888888888776543 122233333 555666677778888888888876543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-15 Score=136.54 Aligned_cols=482 Identities=13% Similarity=0.074 Sum_probs=333.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
|...........+...|+.++|..++.++.+.. +.+...|..|...|-+.|+.+++...+-...... +-|...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 334445555566677799999999999999887 7789999999999999999999998877776654 45778999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHH----HHHHHHhcC
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCN----TLLYRLSNN 163 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~ 163 (504)
....+.|.+++|.-.|.++.+.++ ++....-.-...|-+.|+...|...|.++....|+.+..-+. ..+..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998853 455555666778889999999999999999988754433333 345667778
Q ss_pred CChHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcC---------------------------
Q 048258 164 SMASEAAAILRKMGDR-GYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRG--------------------------- 215 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------- 215 (504)
++.+.|.+.++..... +-..+...++.++..+.+...++.+...+.......
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8889999999887663 233466778889999999999999988887776621
Q ss_pred CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 048258 216 VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR--LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTF 293 (504)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (504)
..++..+ ..++-++......+....+........ +.-+...|..+..++...|.+++|+.+|..+......-+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 1222223 233334444444444444444444444 4445677888999999999999999999999887555567789
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCChhhHHH
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVE--------WGVPPNTITYNI 365 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ 365 (504)
..+..+|...|..+.|.+.|+......+ -+...--.|...+.+.|++++|.+.+..+.. .+..|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 9999999999999999999999987632 2445566677788899999999999998652 234455555566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----------------------CCCCHHhHHHHHHHHHccCCHHHHHHHHHHH--
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADR----------------------ISPDIYTFNALIQSFCRMNKIEKAEKAFFSM-- 421 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-- 421 (504)
....+...|+.++-+.+-..|.... .+-........+.+-.+.++.....+-...-
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 6677788888777554444433210 1111122222333333333322222211111
Q ss_pred ----HhCCCCCCc--ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCh---hhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 422 ----LTLGLRPDN--FSYSALIKALIKSGRFDEAKQTFLSMEQNGC--NPDS---YTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 422 ----~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
...|+..+. ..+.-++.++++.+++++|..++..+..... .++. ..-...+.+.+..+++..|..+++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111222221 2344566778888889999988888876432 1222 1223445667778888888888888
Q ss_pred HHHc
Q 048258 491 SKER 494 (504)
Q Consensus 491 ~~~~ 494 (504)
+...
T Consensus 692 ~i~~ 695 (895)
T KOG2076|consen 692 VITQ 695 (895)
T ss_pred HHHH
Confidence 7754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-14 Score=123.71 Aligned_cols=445 Identities=9% Similarity=0.036 Sum_probs=336.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-hhHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE-ATVRS 120 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ 120 (504)
..+...|....+.-..++++..|..+|++..... ..+...|.-.+.+-.+...+..|..++++.... -|-+ ..|.-
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyK 146 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHH
Confidence 3445555555555566788899999999999876 457778888888888999999999999999876 2333 35555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLD 200 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (504)
.+..--..|+...|.++|++..+.. |+...|++.+..-.+.+..+.|..++++..- +.|++.+|-.....-.+.|+
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~--P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWE--PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 6666667899999999999999874 5788999999999999999999999999876 36899999999999999999
Q ss_pred hhhHHHHHHHHHhc-CC-CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048258 201 LNETCGILDTFIKR-GV-KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN-VNSYNMVIDCFCKVNMMDRATEI 277 (504)
Q Consensus 201 ~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 277 (504)
...+..+|+...+. |- ......+...+..-.++..++.|.-+|+-++..-+... ...|..+...--+-|+.....+.
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 99999999988875 21 11223344444555567778899999998887755422 44565555555556665444332
Q ss_pred --------HHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH-HHHHHH--------HHHHhcCC
Q 048258 278 --------CREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF-TFNSMI--------DCLCRAHR 340 (504)
Q Consensus 278 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~--------~~~~~~~~ 340 (504)
++.+.+.+ +.|..+|--.+..-...|+.+...++|++.+..-++.+.. .|...| -.-....+
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444443 3477888888888888999999999999998763322221 121111 11135789
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 048258 341 FEDALDCLSEMVEWGVPPNTITYNILIRS----LCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEK 416 (504)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 416 (504)
.+.+.++++..++. +|....||.-+--. ..++.++..|.+++-.++. ..|...+|...|..-.+.+.++.+..
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999985 55566666554443 4567899999999988875 58999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 417 AFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC-NPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+|++.++.+ +-+-.+|......-...|+.+.|..+|+-+++... .-....|...+..-...|.++.|+.+++++++..
T Consensus 459 LYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 459 LYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999999975 34567788888777889999999999999997421 1134456666666678899999999999999875
Q ss_pred CCC
Q 048258 496 ISF 498 (504)
Q Consensus 496 ~~~ 498 (504)
-..
T Consensus 538 ~h~ 540 (677)
T KOG1915|consen 538 QHV 540 (677)
T ss_pred ccc
Confidence 433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-14 Score=121.70 Aligned_cols=427 Identities=12% Similarity=0.118 Sum_probs=302.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhH---HHHHHHHHHcCCCCChhhHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEV---FRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
+=|.|+.. ..+|..+.+.-+|+.|.+.|++.+...-..|++..+-.+.-+-. ++.|-.|...| +.+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence 34555544 45688888888999998888877777777776665543332221 23344444433 2233333
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhh
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNE 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (504)
+.|+..+ ++-+. .| .+..++..+|.++++--..+.|.+++++........+..+||.+|.+..-..+
T Consensus 191 ---K~G~vAd---L~~E~---~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~--- 257 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFET---LP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG--- 257 (625)
T ss_pred ---ccccHHH---HHHhh---cC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc---
Confidence 2343332 22221 22 26678999999999999999999999999988888899999999977554333
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHH
Q 048258 204 TCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD----RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDR-ATEIC 278 (504)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 278 (504)
.+++.+|....+.||..|++.++.+..+.|+++.|. +++.+|.+.|+.|...+|..++..+.+.++..+ +..++
T Consensus 258 -K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 258 -KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred -HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 788999999999999999999999999999887754 566777888999999999999999999888754 55555
Q ss_pred HHHHhC----CC----CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC----CCcc---HHHHHHHHHHHHhcCCHHH
Q 048258 279 REMRDR----DI----APNLVTFNTLISGHCKDAEVHKTRELLVMLLECG----FKPD---KFTFNSMIDCLCRAHRFED 343 (504)
Q Consensus 279 ~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~ 343 (504)
.++... .+ +.|...|...+..|.+..+.+-|.++...+.... +.|+ ..-|..+....++....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432 12 2245667888889999999999988887665321 2222 2235566677788888999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-CH--------H--
Q 048258 344 ALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMN-KI--------E-- 412 (504)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-- 412 (504)
-...++.|.-.-..|+..+...++++..-.|.++-.-++|.++...|...+...-..++...++.. +. .
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 999999998777788999999999999999999999999999888765555555555555555443 11 0
Q ss_pred ---HHHHHH-------HHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCChhhHHHHHHHHHhc
Q 048258 413 ---KAEKAF-------FSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC----NPDSYTSNLILETLVQQ 478 (504)
Q Consensus 413 ---~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 478 (504)
-|..++ .++... .......+.++-.+.+.|+.++|.+++..+..++- .|.......+...-.+.
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 011111 122222 23445667777788999999999999999965432 23333455667777788
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 048258 479 GRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 479 g~~~~a~~~~~~~~~~~~ 496 (504)
+....|...++-|...+.
T Consensus 575 ~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCHHHHHHHHHHHHHcCc
Confidence 899999999999876553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-14 Score=129.87 Aligned_cols=342 Identities=15% Similarity=0.127 Sum_probs=256.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+.+...|.+|...|-..|+.+++...+-.+...+ +.|...|..+.....+.|++++|.-.|.+..+.. +++....---
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~er 247 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYER 247 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHH
Confidence 4566789999999999999999999888777665 6678999999999999999999999999999885 4565555556
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhh----HHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcchhHHHHHHHHHh
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNEAT----VRSLVHGVFRCLDPHKAFELLIRFMERE-PLTQKLVCNTLLYRLS 161 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 161 (504)
...|-+.|+...|..-|.++.+...+.|..- ....++.+...++-+.|.+.++.....+ ...+...++.++..+.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 6778899999999999999998754323332 3334566777888899999999887732 2335567888899999
Q ss_pred cCCChHHHHHHHHHHhhCCCCCChh----------------------hHH----HHHHHHHccCChhhHHHHHHHHHhcC
Q 048258 162 NNSMASEAAAILRKMGDRGYLPESS----------------------TFD----YTVTCLVTGLDLNETCGILDTFIKRG 215 (504)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~----------------------~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (504)
+...++.+.............+|.. .+. .+.-++...+..+....+........
T Consensus 328 ~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n 407 (895)
T KOG2076|consen 328 KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN 407 (895)
T ss_pred HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc
Confidence 9999999998888776622222211 111 22233444445555555555555555
Q ss_pred C--CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 048258 216 V--KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTF 293 (504)
Q Consensus 216 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (504)
. ..+...+..+..++...|++.+|+.++..+.......+...|-.+..+|...|..++|.+.|+......+ .+...-
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~R 486 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDAR 486 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-Cchhhh
Confidence 3 3356778999999999999999999999999887777888999999999999999999999999987742 255666
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHH--------HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLL--------ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEM 351 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (504)
-.|...+.+.|+.++|.++++.+. ..+..|+..........+.+.|+.++=+.+-..|
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 677788899999999999998854 2334455555556666677777776644444333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-14 Score=123.88 Aligned_cols=385 Identities=14% Similarity=0.106 Sum_probs=196.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 048258 49 NILIHGICRIGVVDEALRLVKQMEGLGYAPN-VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVF 126 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 126 (504)
....+-|.++|++++|++.|.+..+. .|| +..|.....+|...|+++++++......+. .|+. ..+..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 33455667778888888888888776 566 667777777788888888888877777765 3333 24555556666
Q ss_pred hcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH---------Hh--hCCCCCChhhHHHHHHHH
Q 048258 127 RCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK---------MG--DRGYLPESSTFDYTVTCL 195 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~--~~~~~~~~~~~~~l~~~~ 195 (504)
..|++++|+.-..- .++...+.......-+.+++++ +. ...+.|+.....+....+
T Consensus 195 ~lg~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 195 QLGKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred hhccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 67777766532211 1112222111111112222211 11 111234433333333222
Q ss_pred Hcc----------------------------CChhhHHHHHHHHHhcC-CCc--c---------HHHHHHHHHHHHhcCC
Q 048258 196 VTG----------------------------LDLNETCGILDTFIKRG-VKP--R---------FSTYLLLMEALYKAGR 235 (504)
Q Consensus 196 ~~~----------------------------~~~~~a~~~~~~~~~~~-~~~--~---------~~~~~~l~~~~~~~~~ 235 (504)
... ..+..+.+.+.+-.... ..+ + ..++......+.-.|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 110 01111222111111000 000 0 1122222223344556
Q ss_pred cHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 236 DVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
...+.+-|+.++...+. +...|-.+...|....+.++-...|....+.++. ++.+|..-.+...-.+++++|..=|++
T Consensus 342 ~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665544 2222555555566666666666666666655433 455555555555555666666666666
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 048258 316 LLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD- 394 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 394 (504)
.+...+ .+...|-.+.-+..+.+++++++..|++.++. +|..+..|+.....+...++++.|.+.|+...+. .|+
T Consensus 420 ai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~ 495 (606)
T KOG0547|consen 420 AISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPRE 495 (606)
T ss_pred HhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cccc
Confidence 655421 13334444444444566666666666666654 4445556666666666666666666666666553 222
Q ss_pred ------HH--hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 395 ------IY--TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 395 ------~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
.. +.-.++. +.-.+++..|.++++++++.. +.....|..|...-.+.|+.++|+++|++...
T Consensus 496 ~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 1111111 123356666666666666542 11234556666666666666666666666554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-15 Score=125.10 Aligned_cols=399 Identities=13% Similarity=0.125 Sum_probs=245.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCcchh----HHHHHHHHHhc
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATV-RSLVHGVFRCLDPHKAFELLIRFMEREPLTQKL----VCNTLLYRLSN 162 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 162 (504)
+-|.......+|+..|+-+.+...-|+.-.+ ..+...+.+..++.+|++.|+..+..-|..+.. ..+.+...+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 3344445566666666666665544554332 234455666666777777776666655544333 23333345566
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCC------------ccHHHHHHHH---
Q 048258 163 NSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVK------------PRFSTYLLLM--- 227 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~--- 227 (504)
.|.++.|+..|+...+. .|+..+-..++-++...|+-+...+.|.+++..... |+....+..+
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 67777777777666553 456555555555666666666666666666653211 1111111111
Q ss_pred --HHHHhcCC--cHHHHHHHHHHHhCCCCCCHH---------------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 228 --EALYKAGR--DVEGDRYLNHVFKDRLVSNVN---------------------SYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 228 --~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
...-+.++ .++++-.--+++.--+.|+-. .--.-.--+.+.|+++.|+++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 11111111 111111111111111111100 00011234566777777777666654
Q ss_pred hCCCCC------------------------------------ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH
Q 048258 283 DRDIAP------------------------------------NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF 326 (504)
Q Consensus 283 ~~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (504)
+.+-+. +......-.......|++++|.+.|.+.......-...
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 432111 11111111112234688999999999988763322222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFC 406 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (504)
.|+ +.-.+-..|+.++|++.|-++... ...+..+...+...|....+...|++++.+.... ++.|+..+.-|...|-
T Consensus 527 lfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 527 LFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 233 233466789999999999887654 2347778888889999999999999999888765 5667889999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH-HHHhcCCHHHHH
Q 048258 407 RMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILE-TLVQQGRFEEAH 485 (504)
Q Consensus 407 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~ 485 (504)
+.|+-..|.+.+-+--+. ++.+..+...|..-|....-+++++..|++..- +.|+..-|..++. ++.+.|+++.|.
T Consensus 604 qegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred cccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999887655543 566788888888888888889999999999876 6899999987765 556789999999
Q ss_pred HHHHHHHHc
Q 048258 486 DIVKTSKER 494 (504)
Q Consensus 486 ~~~~~~~~~ 494 (504)
++++...++
T Consensus 681 d~yk~~hrk 689 (840)
T KOG2003|consen 681 DLYKDIHRK 689 (840)
T ss_pred HHHHHHHHh
Confidence 999988765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-14 Score=119.31 Aligned_cols=396 Identities=12% Similarity=0.036 Sum_probs=265.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHHHHH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD-RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN-VYTYTILIDGF 90 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 90 (504)
+-....-|.++|++++|++.|.+.+.. .|+ +..|.....+|...|+|+++++.-....+. .|+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 445667788999999999999999987 577 888999999999999999999998888876 444 44566666777
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-cC-CC-cchhHHHHHHHHHhc-----
Q 048258 91 CNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME-RE-PL-TQKLVCNTLLYRLSN----- 162 (504)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~-~~~~~~~~l~~~~~~----- 162 (504)
-..|++.+|+.=.....-.+.-.|..+- .++.-..+. .|....++-.. .+ |. |......+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lkk----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIE-PMAERVLKK----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhH-HHHHHHHHH----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 7788888776433222211111121111 111111111 11111111111 11 11 111111111111110
Q ss_pred --------------------CC---ChHHHHHHHHHHhhC-CCCCC-----------hhhHHHHHHHHHccCChhhHHHH
Q 048258 163 --------------------NS---MASEAAAILRKMGDR-GYLPE-----------SSTFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 163 --------------------~~---~~~~a~~~~~~~~~~-~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
.+ .+..|.+.+.+-... -..++ ..++......+.-.|+.-.+.+-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 11 222333332221110 01111 11222222334456889999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048258 208 LDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIA 287 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (504)
++..+.....+ ...|..+...|....+.++....|..+.+.++. ++.+|..-.+...-.+++++|..=|++..+..+.
T Consensus 349 ~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 99999875333 333888888999999999999999999998876 7888888888888889999999999999887533
Q ss_pred CChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChhh
Q 048258 288 PNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVP-----PNTIT 362 (504)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 362 (504)
+...|-.+.-+..+.+.++++...|+..++. ++..+.+|+.....+...++++.|.+.|+..++.... .+...
T Consensus 427 -~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 -NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 6667777777778899999999999999876 5667899999999999999999999999999875211 11111
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 363 --YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 363 --~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
.-.++. +.-.+++..|..++++..+.+ +-....+..|...-...|+.++|+++|++...
T Consensus 505 lV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 505 LVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111221 113489999999999999863 23455899999999999999999999998875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-13 Score=113.96 Aligned_cols=457 Identities=12% Similarity=0.072 Sum_probs=286.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
++-+....++..|+.+++.....+-.-...+-..+..++...|++++|+..+..+.+.. .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677889999999999887654422222333445667788999999999999988765 56777777777777788999
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKM 176 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (504)
.+|..+-....+ ++.....++....+.|+-++-....+.+.+.. .---++.......-.+++|++++...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888776542 44455566677777888777776666654421 22233444555556789999999998
Q ss_pred hhCCCCCChhhHHH-HHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCH
Q 048258 177 GDRGYLPESSTFDY-TVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNV 255 (504)
Q Consensus 177 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (504)
+..+ |+-...+. +.-+|.+..-++-+.++++-..+. ++.++...+..+....+.=.-..|..-...+.......
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 7652 33334443 344667777778888888877765 34444555555555554433334444444444332111
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHH
Q 048258 256 NSYNMVIDCFCKV-----NMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNS 330 (504)
Q Consensus 256 ~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (504)
...+.-.++. .+-+.|++++-.+... .| ..-..++--|.+++++.+|..+...+... .|-......
T Consensus 253 ---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKg 323 (557)
T KOG3785|consen 253 ---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKG 323 (557)
T ss_pred ---chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 1122223333 3557778777666554 22 23344555688889999988877765322 222222222
Q ss_pred HHHHH-----HhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 048258 331 MIDCL-----CRAHRFEDALDCLSEMVEWGVPPNTI-TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQS 404 (504)
Q Consensus 331 l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (504)
+..+- ....+..-|...|+-.-..+..-|+. --.++..++.-..++++.+-.+..+..--...|... -.+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHH
Confidence 22221 12223455666666554444333332 233455555566678888888887776533333333 346788
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCcccH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHH
Q 048258 405 FCRMNKIEKAEKAFFSMLTLGLRPDNFSY-SALIKALIKSGRFDEAKQTFLSMEQNGCNPDS-YTSNLILETLVQQGRFE 482 (504)
Q Consensus 405 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 482 (504)
++..|.+.+|+++|-++....++ |..+| ..+.++|.+.+.++-|+.++-++.. +.+. .....+..-|.+.+.+-
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999998776654333 44555 4566788889999888877655432 2222 34455667888889988
Q ss_pred HHHHHHHHHHHcCCCCCCCCC
Q 048258 483 EAHDIVKTSKERGISFKSFPG 503 (504)
Q Consensus 483 ~a~~~~~~~~~~~~~~~~~~~ 503 (504)
-|.+.|..+...+..|+.|.|
T Consensus 479 yaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 479 YAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred HHHHhhhHHHccCCCccccCC
Confidence 888899988888888888865
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-14 Score=130.18 Aligned_cols=287 Identities=13% Similarity=0.083 Sum_probs=191.0
Q ss_pred cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048258 198 GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEI 277 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 277 (504)
.|+++.|.+.+....+..-. ....+.....+..+.|+++.|.+++.++.+..+.............+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46666666666554443211 12223333444467777777777777776654332222222335566777777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 278 CREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDK-------FTFNSMIDCLCRAHRFEDALDCLSE 350 (504)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (504)
++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7777766533 5666777777777777777777777777766543222 1222333333344556666666666
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc
Q 048258 351 MVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN 430 (504)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 430 (504)
+.+. .+.++.....+...+...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+..++..+.. +-|.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 6543 3457778888888888999999999999888874 4555322 2333445688888998888888762 2334
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 431 FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
..+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++....
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678888889999999999999998874 688888888889999999999999988887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-14 Score=131.95 Aligned_cols=293 Identities=13% Similarity=0.033 Sum_probs=199.0
Q ss_pred HccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048258 196 VTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRAT 275 (504)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (504)
...|+++.|.+.+.+..+.. +.+...+.....+....|+++.|.+++.++.+..+.+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34677777777777666543 11234445556777777888888888888776554433334444567777888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH---HHhcCCHHHHHHHHHHHH
Q 048258 276 EICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC---LCRAHRFEDALDCLSEMV 352 (504)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 352 (504)
..++.+.+..+. +...+..+...+...|+++.+.+.+..+.+.+..+.......-..+ ....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888877533 5667778888888888888888888888877543222221111111 122233333344554444
Q ss_pred HCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh---HHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 048258 353 EWGV---PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYT---FNALIQSFCRMNKIEKAEKAFFSMLTLGL 426 (504)
Q Consensus 353 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 426 (504)
+... +.+...+..+...+...|+.++|.+.+++..+.. |+... ...........++.+.+.+.+++..+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 4321 2377788888889999999999999999998863 34331 111122233457888889998888875
Q ss_pred CCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 427 RPDN---FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 427 ~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.|+. ....++...+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++....
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4544 4556889999999999999999995443335788888889999999999999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-13 Score=113.07 Aligned_cols=365 Identities=14% Similarity=0.055 Sum_probs=249.7
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH--H
Q 048258 112 CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTF--D 189 (504)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 189 (504)
..|...+-.....+.+.|....|...|.......|- .-..|..|.... .+.+ ....+.. +...+...+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~li---t~~e----~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELI---TDIE----ILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhh---chHH----HHHHHHh-cCcccchHHHHH
Confidence 345555555555666778888888888877765432 222333332211 1111 1111111 111122211 1
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCK 267 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 267 (504)
.+..++-...+.++++.-.+...+.|++.+...-+..+.+.....++++|+..|+.+.+..|- -|..+|..++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 233455566678888888888888888877777777788888889999999999999887643 2566666655 333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 048258 268 VNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDC 347 (504)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (504)
..+ ..+.++.+-...-.+--+.|...+.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|++.
T Consensus 310 ~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 322 22222222221111224467777888888888999999999998887532 456777788889999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 048258 348 LSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLR 427 (504)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 427 (504)
++.+++.. |.|...|-.+.++|.-.+-..-|+-.|+++.+.. +.|...|.+|..+|.+.++.++|.+.|.+....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99998874 5588899999999999999999999999998863 5577899999999999999999999999998876 4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 428 PDNFSYSALIKALIKSGRFDEAKQTFLSMEQN----GCNPD--SYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.+...+..+...+-+.++.++|.+.+++.++. |...+ ..+..-|..-+.+.+++++|..+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 45677888999999999999999988887652 22222 22334456667778888888776665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=141.44 Aligned_cols=262 Identities=20% Similarity=0.209 Sum_probs=110.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDR-LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD 303 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (504)
.+...+.+.|++++|.+++....... ++.+...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55777888888888888886554443 3446666666777777888999999999998877543 55667777776 688
Q ss_pred CchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048258 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWG-VPPNTITYNILIRSLCAIGDVARSLRL 382 (504)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 382 (504)
+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999888776554 2466777788888889999999999999877532 345777888888999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 048258 383 FQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCN 462 (504)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 462 (504)
++++.+.. +.|....+.++..+...|+.+++.+++....+.. +.|+..+..+..++...|++++|..++++..... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99998863 3357788889999999999999888888887753 4566778889999999999999999999988752 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 463 PDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 463 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.|+.+...++.++...|+.++|.++..++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4788888999999999999999998887654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-17 Score=140.22 Aligned_cols=260 Identities=17% Similarity=0.092 Sum_probs=86.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQ-CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.+...+.+.|+++.|+++++...... .+.++..|..+.......++++.|++.++++...+. -++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 55788888888888888886544333 244555566666666777888888888888887652 356667777766 678
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREP-LTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
+++++|.++++...+.. +++..+..++..+...++++++.++++.+..... ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766552 4556666777777888888888888887665332 23555666677777777777777777
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 048258 173 LRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (504)
+++..+.... +......++..+...|+.+++.++++...+.. +.++..+..+..++...|+.++|..++++..+..+.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 7777665221 45556666666777777777666666665553 334445556666666666666666666666665433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 253 SNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
|+.....+..++...|+.++|.++..+.
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --HHHHHHHHHHHT---------------
T ss_pred -cccccccccccccccccccccccccccc
Confidence 6666666666666666666666666554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-12 Score=108.87 Aligned_cols=423 Identities=10% Similarity=0.039 Sum_probs=284.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHH---------------HhcCCHHHHHHHH----HHHHh--
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGI---------------CRIGVVDEALRLV----KQMEG-- 73 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------------~~~g~~~~a~~~~----~~~~~-- 73 (504)
.+.+.+..+..++.|.-.++..... -..|..+..-+ .+.+.+..-...| ..+..
T Consensus 83 ~laks~fd~kEf~Raa~fL~~~~s~-----k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~~ 157 (559)
T KOG1155|consen 83 LLAKSYFDCKEFERAAFFLQNCKSK-----KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESKH 157 (559)
T ss_pred hhHhhhhhhHHHHHHHHHHHhcchH-----HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHHH
Confidence 5778899999999998888876631 11121111111 1111222111111 22222
Q ss_pred CCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHH
Q 048258 74 LGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVC 153 (504)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (504)
.+...|...+-...-.+.+.|..+.|++.|......- +..-..|..|..... + .+....+....+.......
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~----~e~~~~l~~~l~~~~h~M~ 229 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---D----IEILSILVVGLPSDMHWMK 229 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---h----HHHHHHHHhcCcccchHHH
Confidence 2234454444444444557788899999988887651 223334444433322 2 2222223222222111111
Q ss_pred H-HHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCC--CccHHHHHHHHHHH
Q 048258 154 N-TLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGV--KPRFSTYLLLMEAL 230 (504)
Q Consensus 154 ~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 230 (504)
. -+..++....+.+++.+-.......|+.-+...-+....+.....|+++|+.+|+++.+... -.|..+|..++..-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1 23355666668888888888888888876666667777788889999999999999998731 12566777666543
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHH
Q 048258 231 YKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTR 310 (504)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (504)
....+..- +-+.+...+ +--+.+...+.+.|+-.++.++|..+|+...+.++. ....|+.+.+-|....+...|.
T Consensus 310 ~~~skLs~---LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSKLSY---LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHHHHH---HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 32222111 111111111 223456667788888899999999999999988644 6678999999999999999999
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 311 ELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR 390 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (504)
+-++...+.. +.|-..|-.+.++|.-.+-+.-|+-.|++..... |.|...|.+|..+|.+.++.++|++.|.+....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999875 4488899999999999999999999999999873 6688999999999999999999999999999876
Q ss_pred CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 391 ISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL----GLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 391 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
..+...+..|...|-+.++..+|...|++.++. |...+ .....-|..-+.+.+++++|.........
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 336688999999999999999999999887762 22111 12222344556677888887776655544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-14 Score=127.16 Aligned_cols=291 Identities=10% Similarity=0.005 Sum_probs=192.2
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHH
Q 048258 161 SNNSMASEAAAILRKMGDRGYLPESS-TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (504)
...|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3467777777777666554 23322 23344556666778888888877776543222223344457777788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---hcCCchHHHHHHHHH
Q 048258 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFN-TLISGH---CKDAEVHKTRELLVM 315 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 315 (504)
...++.+.+..|. ++.++..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+...+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888877755 6677778888888888888888888888877643 222221 111111 222222323334444
Q ss_pred HHHCCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 316 LLECGF---KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT---YNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 316 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
+.+... +.++..+..+...+...|+.++|..++++..+.. |+... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 433321 1367788888888999999999999999998863 33321 112222223457788888888888775
Q ss_pred CCCCCH--HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 390 RISPDI--YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 390 ~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3344 566788888999999999999999533333478888888999999999999999999988653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-13 Score=124.75 Aligned_cols=254 Identities=12% Similarity=0.050 Sum_probs=137.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHH
Q 048258 126 FRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETC 205 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (504)
.+.|+++.|.+.+.++.+..+.............+...|+++.|.+.++++.+.... +......+...|.+.|+++++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444444444333221111112233444444455555544444443211 3334444444555555555555
Q ss_pred HHHHHHHhcCCCccH-------HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 206 GILDTFIKRGVKPRF-------STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEIC 278 (504)
Q Consensus 206 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 278 (504)
+++..+.+.+..++. .++..++.......+.+...++++.+.+.- +.++.....+...+...|+.++|.+++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555544322111 122223333333333444444444443332 236666677777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048258 279 REMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPP 358 (504)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (504)
++..+. +|+... .++.+....++.+++.+..+...+.. +-|+..+..+...|.+.+++++|.+.|+...+. .|
T Consensus 287 ~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P 359 (398)
T PRK10747 287 LDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP 359 (398)
T ss_pred HHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 777664 333321 12233344577777777777776653 235566667777777777777777777777764 56
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 359 NTITYNILIRSLCAIGDVARSLRLFQKMQA 388 (504)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (504)
+...+..+...+.+.|+.++|.+++++...
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777777777777777777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-12 Score=113.57 Aligned_cols=439 Identities=12% Similarity=0.032 Sum_probs=206.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+..-+..+.+-+..+.++..|.-+-+++......|+.. -.+.+++.-.|++.+|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34556777788888899999999999888765444444 44677788888999998887765433 457778888888
Q ss_pred HHHhcCChhhHHHHHHHHHHc--C-----------CCCChhh-----------HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 89 GFCNAKRVAEVFRVLEIMKER--N-----------VCPNEAT-----------VRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~--~-----------~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
++.+..++++|..++...... . +.+|..- +-.-...|....+.++|...|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 888999999999988822110 0 1111110 011123344556677777777776654
Q ss_pred CCCcchhHHHHHHHHHhc-----------------CCChHHHHHHHHHHhh-C----------------CCCCChhhHHH
Q 048258 145 EPLTQKLVCNTLLYRLSN-----------------NSMASEAAAILRKMGD-R----------------GYLPESSTFDY 190 (504)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~-----------------~~~~~~a~~~~~~~~~-~----------------~~~~~~~~~~~ 190 (504)
... .-..+..++....- .+...+-++.+-++.. . +..-+......
T Consensus 171 D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 171 DAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred chh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 322 11122222211111 0111111111111100 0 00111122222
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048258 191 TVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (504)
-..-+...+++.+..++.+...+.. ++....+..-+.++...|+..+-..+-.++.+..|. .+.+|-++.-.|...|.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcC
Confidence 2233334444455555444444442 333333333333444444444444444444443332 34444444444444455
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 271 MDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSE 350 (504)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (504)
..+|.+.|.+....+.. -...|-.+.+.|.-.+..++|...+....+.- +-....+--+.--|.+.+..+.|.+.|.+
T Consensus 328 ~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 55555555444333211 12344444444555555555554444443321 00111111122224444455555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 048258 351 MVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD----R-ISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL 424 (504)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 424 (504)
.... .|.|+..++-+.......+.+.+|..+|+..... + -.+ -..+++.|..+|.+.+.+++|+..+++.+..
T Consensus 406 A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4443 2334444444444444444555555555444321 0 000 1123444455555555555555555555443
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 425 GLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 425 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
. +.+..++.++.-.|...|+++.|++.|.+.+.
T Consensus 485 ~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 485 S-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred C-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 2 33444444555555555555555555555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-13 Score=108.61 Aligned_cols=220 Identities=12% Similarity=0.112 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCh
Q 048258 58 IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE------ATVRSLVHGVFRCLDP 131 (504)
Q Consensus 58 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 131 (504)
+.+.++|+++|-+|.+.. +.+..+..+|.+.|-+.|+.+.|+.+.+.+.++ ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 457778888888887753 334556667777777778888888888877765 332 1334455556666666
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHccCChhhHHHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPES----STFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
+.|+.+|..+.+.+. ........|+..|-...+|++|+++-+++...+..+.. ..|-.+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 666666666555322 13344445555566666666666555555544332221 1222233333334444444444
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 208 LDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
+.+..+.+ +..+.+-..+.+.....|+++.|.+.++.+.+.++.--..+...+..+|...|+.++....+..+.+
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444432 2223333334444444444444444444444444333333444444444444444444444444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-14 Score=124.77 Aligned_cols=284 Identities=12% Similarity=-0.009 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhcCChhhHHHH
Q 048258 25 SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APNVYTYTILIDGFCNAKRVAEVFRV 102 (504)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 102 (504)
+.++|+..|+..... +..+.++...+..+|...+++++|..+|+.+.+... --+..+|...+--+- + +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 445555666553332 233344555555666666666666666666554420 113344444443221 1 111111
Q ss_pred HH-HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC
Q 048258 103 LE-IMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGY 181 (504)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (504)
+. .+... -+..+.+|..+..+|.-+++.+.|++.|++..+.+|. ...+|+.+.+-+....++|.|...|+..+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 11 11111 1224445555555555555555555555555554433 33444444444444445555555555444
Q ss_pred CCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048258 182 LPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMV 261 (504)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (504)
... +-+..+|..+...|.+.++++.|.-.|+++++.++. +......+
T Consensus 483 -------------------------------~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~ 529 (638)
T KOG1126|consen 483 -------------------------------GVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHI 529 (638)
T ss_pred -------------------------------cCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhh
Confidence 321 122334445555555555555555555555555443 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 048258 262 IDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRF 341 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (504)
...+.+.|+.|+|+.++++....+.+ |+..--..+..+...+++++|+..++++.+. ++-+...+..+...|-+.|+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccc
Confidence 55555555555566555555554433 3333333344444555555666555555554 122344455555555555666
Q ss_pred HHHHHHHHHHHHC
Q 048258 342 EDALDCLSEMVEW 354 (504)
Q Consensus 342 ~~a~~~~~~~~~~ 354 (504)
+.|+.-|.-+.+.
T Consensus 608 ~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 608 DLALLHFSWALDL 620 (638)
T ss_pred hHHHHhhHHHhcC
Confidence 6665555555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-13 Score=107.75 Aligned_cols=289 Identities=11% Similarity=0.109 Sum_probs=179.8
Q ss_pred CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 048258 199 LDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN---VNSYNMVIDCFCKVNMMDRAT 275 (504)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 275 (504)
++.++|.+.|-+|.+.. +.+..+...+...+.+.|..+.|+++.+.+.+...-+. ......+.+-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34444444444444432 22334445555555555666666665555554321111 123344566677777788888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 276 EICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDK----FTFNSMIDCLCRAHRFEDALDCLSEM 351 (504)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (504)
.+|..+.+.+.. -......++..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888777765422 3456667777787888888888887777766544332 24555555666677788888888888
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc
Q 048258 352 VEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF 431 (504)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 431 (504)
.+.+ +..+..-..+.+.....|+++.|++.++.+.+.+..--..+...|..+|...|+.++...++.++.+.. +...
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 7764 335555566777788888888888888888877544445677778888888888888888888887753 3333
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQ---QGRFEEAHDIVKTSKER 494 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 494 (504)
.-..+...-....-.+.|...+.+-+.+ +|+...+..++..-.. .|...+-...+..|...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3344444333333455566555555543 6788777777765543 34566666667766644
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-11 Score=105.38 Aligned_cols=472 Identities=11% Similarity=0.083 Sum_probs=231.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVD-QCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+.+|...+..+.++|+....+.+|++.+.. .+......|...+......|-++.++.++++..+. ++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345666777777777777777777776643 22334556666676666677777777777777654 2333455556
Q ss_pred HHHhcCChhhHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 048258 89 GFCNAKRVAEVFRVLEIMKERN------VCPNEATVRSLVHGVFRCLDP---HKAFELLIRFMEREPLTQKLVCNTLLYR 159 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (504)
.++..+++++|.+.+....... .+.+...|..+.....+.-+. -...++++.....-+..-...|.+|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6666667666666666554321 112222333333333322111 1122223333322222233344555555
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH---------------------------------------------
Q 048258 160 LSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTC--------------------------------------------- 194 (504)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------------- 194 (504)
|.+.|.++.|.++|++....- .+..-|..+...
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 555555555555544433220 011111111111
Q ss_pred ---------------------HHccCChhhHHHHHHHHHhcCCCc------cHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 048258 195 ---------------------LVTGLDLNETCGILDTFIKRGVKP------RFSTYLLLMEALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 195 ---------------------~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (504)
-...|+..+.+..+.++.+. +.| -...+..+...|-..|+.+.|..+|++..
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 11223444455555555443 111 12345666677777777777777777776
Q ss_pred hCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------ChhhHHHHHHHHhcCCchH
Q 048258 248 KDRLVSN---VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-----------------NLVTFNTLISGHCKDAEVH 307 (504)
Q Consensus 248 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~ 307 (504)
+.....- ..+|......-.+..+++.|+++.+....-.-.| +...|...++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 6543321 2345555555566667777777666554321110 2223444444444556667
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHh---cCCHHHHHHHH
Q 048258 308 KTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI-TYNILIRSLCA---IGDVARSLRLF 383 (504)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~a~~~~ 383 (504)
....+|+++....+. ++...-.....+-.+.-++++.+++++-+..-..|+.. .|+..+.-+.+ ...++.|..+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777777777655432 22222222222334445666666666555442233332 44544444332 22567777777
Q ss_pred HHHHhCCCCCCHHhHHHHH--HHHHccCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 384 QKMQADRISPDIYTFNALI--QSFCRMNKIEKAEKAFFSMLTLGLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
++..+ +.+|...-+-.|+ ..--+.|-...|..+++++... +++. ...|+..|.-....=-+...+.+|+++++.
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 77776 4455433222222 1122446666666666665443 2222 233444444333322234445555555553
Q ss_pred CCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 460 GCNPDSYTSN---LILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 460 ~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
-|+...-. .....-++.|..+.|+.++....+
T Consensus 652 --Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 --LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred --CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 34333222 223334455666666666655444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-12 Score=111.75 Aligned_cols=425 Identities=12% Similarity=0.042 Sum_probs=294.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC------
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL--GY------ 76 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~------ 76 (504)
|+.-|+..--.+++.+.-.|+++.|..+...-.-. ..|..+.......+.+..+|++|..++...... .+
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 34455555556889999899999998887665322 467777778888889999999999998832110 00
Q ss_pred -----CCcHHh----HHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------------
Q 048258 77 -----APNVYT----YTIL-------IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR------------- 127 (504)
Q Consensus 77 -----~~~~~~----~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------- 127 (504)
.+|..- -+.- ...|....+.++|...|.+....++. ....+..++....-
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 111110 0011 12234445677777777776654321 11222222211110
Q ss_pred ----cCC-hHHHHHHHHHHHhc----------------CCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChh
Q 048258 128 ----CLD-PHKAFELLIRFMER----------------EPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESS 186 (504)
Q Consensus 128 ----~~~-~~~a~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (504)
.+. .+....+|+..... +...+......-...+...+++.+..++++.+.+.. ++...
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~ 279 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLP 279 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcc
Confidence 111 11112222211000 111233344445566778899999999999988763 34666
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 187 TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
.+..-|.++...|+..+-..+=.++.+. .|..+.+|..++--|...|+..+|.++|.+....++. -...|-.+...|.
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa 357 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFA 357 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhh
Confidence 6666777899999988888887788776 3667788999999999999999999999998876544 4567888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 048258 267 KVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALD 346 (504)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 346 (504)
-.|..|+|+..+....+.= +-..--+--+.--|.+.++...|.+.|....... +.|+..++-+.-.....+.+.+|..
T Consensus 358 ~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALK 435 (611)
T ss_pred hcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHH
Confidence 9999999999987776541 1111122334445788999999999999988763 4588888888888888999999999
Q ss_pred HHHHHHHC----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 048258 347 CLSEMVEW----G--VPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420 (504)
Q Consensus 347 ~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 420 (504)
+|+..... + ...-..+++.|..+|.+.+.+++|+..+++..... +.+..++.++.-.|...|+++.|.+.|.+
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99987731 0 01133468899999999999999999999999873 66888999999999999999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHH
Q 048258 421 MLTLGLRPDNFSYSALIKAL 440 (504)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~ 440 (504)
.+- +.|+..+...++..+
T Consensus 515 aL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 515 ALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHh--cCCccHHHHHHHHHH
Confidence 987 478876666666533
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-14 Score=126.15 Aligned_cols=288 Identities=10% Similarity=0.028 Sum_probs=226.1
Q ss_pred CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 048258 199 LDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCKVNMMDRATE 276 (504)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 276 (504)
-+..+|+..|..+..+ +..+..+...+..+|...+++++|.++|+.+.+..+. .+...|...+..+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567888888885544 4455688899999999999999999999999876542 366777777654422 23344
Q ss_pred HHH-HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048258 277 ICR-EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWG 355 (504)
Q Consensus 277 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (504)
++. .+.+. -+-.+.+|..+..+|.-+++++.|++.|++..+.+. -...+|+.+..-+.....++.|...|+..+...
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 443 33333 244779999999999999999999999999988642 267788888888888999999999999998763
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 048258 356 VPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSA 435 (504)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 435 (504)
. -+..+|..+...|.+.++++.|+-.|+++.+.+ +-+......+...+.+.|+.++|+++++++.... +.|+..--.
T Consensus 486 ~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 P-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred c-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 2 245567778889999999999999999999865 4456677778888899999999999999999864 334444445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGIS 497 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 497 (504)
-+..+...+++++|...++++.+. ++.+..++..+++.|.+.|+.+.|..-|.-+.+....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 667788899999999999999985 3335667888899999999999999999888876543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-12 Score=107.81 Aligned_cols=292 Identities=11% Similarity=0.091 Sum_probs=143.8
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHH
Q 048258 163 NSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (504)
.|++..|++...+-.+.+-. ....|.....+.-..||.+.+-.++.+..+....++........+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56666666666555444322 12233333444455556666666655555543334444455555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC
Q 048258 243 LNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFK 322 (504)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (504)
..++.+..+. ++.......++|.+.|++.....++..+.+.+.-.+...-.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 5555555544 45555555555555555555555555555554432221100
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048258 323 PDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402 (504)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (504)
....++..+++-....+..+.-...|+..... .+.++..-..++.-+...|+.++|.++..+..+.+..|+. ..+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~- 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL- 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-
Confidence 00123333333333333333334444444332 2334444445555555556666666655555555444431 111
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 048258 403 QSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFE 482 (504)
Q Consensus 403 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 482 (504)
-.+.+-++...-.+..++..+.- +-++..+.+|...|.+.+.+.+|...|+...+. .|+..++..+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 12334455555555544444331 222344555555566666666666666655542 455556666666666666666
Q ss_pred HHHHHHHHHH
Q 048258 483 EAHDIVKTSK 492 (504)
Q Consensus 483 ~a~~~~~~~~ 492 (504)
+|.+..++..
T Consensus 379 ~A~~~r~e~L 388 (400)
T COG3071 379 EAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH
Confidence 6665555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-12 Score=107.76 Aligned_cols=287 Identities=12% Similarity=0.037 Sum_probs=188.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHH
Q 048258 127 RCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCG 206 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (504)
..|++.+|++...+..+.+.. ....|..-..+....|+.+.+-.++.+..+....++....-...+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 469999999999997776654 4556666778888899999999999999887555666677778888999999999999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHH
Q 048258 207 ILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVN-------SYNMVIDCFCKVNMMDRATEICR 279 (504)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 279 (504)
-+.++.+.+ +-.+.+.....++|.+.|++.....+...+.+.+.-.+.. +|+.+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999886 4567888889999999999999999999999988664443 34444444444444444444444
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048258 280 EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359 (504)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (504)
..... .+.++..-..++.-+.+.|+.++|.++..+..+.+..|+ ...++ .+.+-++...-++..+...+. .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 44332 222444445555555566666666666666555544333 11111 234455555555555544443 2334
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
+..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455555666666666666666666655543 45666666666666666666666666555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-10 Score=103.57 Aligned_cols=473 Identities=13% Similarity=0.090 Sum_probs=311.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+|-...+-.-+--+...+++...+++.+.+.+.. +-...+.....-.+...|+-++|..........+ ..+.+.|..+
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHH
Confidence 3333333333444556889999999999998753 5456666655556677899999999999888765 3477789988
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (504)
.-.+-...++++|++.|..+...+ +.|...+..+.-.-++.++++.....-..+.+..+. ....|..+..++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Confidence 877778899999999999999875 346678888887778889999888888888777554 556788888888899999
Q ss_pred HHHHHHHHHHhhCC-CCCChhhHHHHH------HHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHH
Q 048258 167 SEAAAILRKMGDRG-YLPESSTFDYTV------TCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239 (504)
Q Consensus 167 ~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (504)
..|..+++...+.. ..|+...+.... ....+.|..+.|.+.+...... +......-..-...+.+.++.++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999887654 345666554433 3445678888888777665443 112223334445677889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHhc-CCchHHHHHHHHHHH
Q 048258 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRAT-EICREMRDRDIAPNLVTFNTLISGHCK-DAEVHKTRELLVMLL 317 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 317 (504)
..++..++...+. +...|..+..++.+..+.-+++ .+|....+.- |.......+--.... ..-.+....++....
T Consensus 239 ~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 239 VKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 9999999987544 4444555555554333444444 6666665541 111111111111112 222344455666667
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCChhhH--HHHHHHHHhcCCHHHHHH
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV----EWG----------VPPNTITY--NILIRSLCAIGDVARSLR 381 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~ 381 (504)
+.|+++ ++..+.+.|-.-...+-..++...+. ..| -+|.+..| ..++..+-..|+++.|..
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 777653 33334333322221111111111111 111 14555544 456778889999999999
Q ss_pred HHHHHHhCCCCCCHH-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 048258 382 LFQKMQADRISPDIY-TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 382 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 460 (504)
+++.+..+ .|+.. .|..=.+.+...|++++|..++++..+.+ .+|...-..-+.-..+.++.++|.++.......|
T Consensus 393 yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 393 YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 99999986 56644 66666788999999999999999999875 4554443355566678999999999999998776
Q ss_pred CCC--C---h-hhHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 048258 461 CNP--D---S-YTSNL--ILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 461 ~~~--~---~-~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
... + . -.|.. -+.+|.++|++-.|.+-+....+
T Consensus 470 ~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 470 FGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred cchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 411 1 1 12222 24678888888777766655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-10 Score=98.44 Aligned_cols=319 Identities=12% Similarity=0.132 Sum_probs=211.0
Q ss_pred CCChHHHHHHHHHHhhCCCCCC------hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhc
Q 048258 163 NSMASEAAAILRKMGDRGYLPE------SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR---FSTYLLLMEALYKA 233 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 233 (504)
.|+..+....|.+.... +.|. ...|..+.+.|-..|+++.|..+|++..+...+.- ..+|...+..-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 34455555556555432 2222 23577788889999999999999999988654332 45666667777788
Q ss_pred CCcHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 048258 234 GRDVEGDRYLNHVFKDRLV-----------------SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTL 296 (504)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (504)
.+++.|..+.+.+....-. .+...|...+..--..|-++....+++.+.+..+. ++...-..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 8899999988877643211 12344555666666778899999999999887654 33332222
Q ss_pred HHHHhcCCchHHHHHHHHHHHHCCCCccH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHH
Q 048258 297 ISGHCKDAEVHKTRELLVMLLECGFKPDK-FTFNSMIDCLCR---AHRFEDALDCLSEMVEWGVPPNTIT--YNILIRSL 370 (504)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 370 (504)
...+-...-++++.++|++-+..-..|+. ..|+..+.-+.+ ....+.|..+|++..+ +.+|...- |-.....-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 23344455678888888876655434444 356666555443 3468999999999999 56655432 22222333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH---HHHHHhcCC
Q 048258 371 CAIGDVARSLRLFQKMQADRISPD--IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSAL---IKALIKSGR 445 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~ 445 (504)
.+.|-...|+++++++... +++. ..+||..|.-....--+.....+|+++++. -|+...-... ...=.+.|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhh
Confidence 4568889999999998764 4443 347888777665555567778899999885 5665543332 334467899
Q ss_pred hhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHH
Q 048258 446 FDEAKQTFLSMEQNGCNP--DSYTSNLILETLVQQGRFEEAHDIV 488 (504)
Q Consensus 446 ~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 488 (504)
++.|+.++....+. ..| +...|...-..-.+.|+-+-..+++
T Consensus 674 idRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 674 IDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999888765 344 5566777777778888854444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-12 Score=115.77 Aligned_cols=466 Identities=13% Similarity=0.057 Sum_probs=245.8
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh
Q 048258 3 FLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 3 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
..|+.||..+|.++|.-|+..|+.+.|- +|..|.-...+.+...++.++....+.++.+.+. .|-+.+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4699999999999999999999999998 8888887776777788888888887777776664 567778
Q ss_pred HHHHHHHHHhcCChhh---HHHHHHHHHH----cCCC-CChhhH-------------HHHHHHHHhcCChHHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRVAE---VFRVLEIMKE----RNVC-PNEATV-------------RSLVHGVFRCLDPHKAFELLIRF 141 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~---a~~~~~~~~~----~~~~-~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~ 141 (504)
|..|..+|.+.|+... ..+.++.+.. .|+. |....+ ...+....-.|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888888887544 2222222221 1211 111110 01122222233334444333322
Q ss_pred HhcCCCcchhHHHHHHHHHhcCC-ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccH
Q 048258 142 MEREPLTQKLVCNTLLYRLSNNS-MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRF 220 (504)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (504)
........... .++-+.... .+++-..+.+...+ .|++.++..++.+....|+.+.|..++..|.+.|++.+.
T Consensus 166 Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 21111100011 122221111 12222222222222 356666666666666666666666666666666665555
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH------------------------HHH
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDR------------------------ATE 276 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------a~~ 276 (504)
.-|-.++-. .++..-+..+..-+...|+.|+..++...+..+..+|.... |.+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 544444433 44555555555555555666665555554444444322111 111
Q ss_pred HHH------------HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCC-
Q 048258 277 ICR------------EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG---FKPDKFTFNSMIDCLCRAHR- 340 (504)
Q Consensus 277 ~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~- 340 (504)
.++ +..-.|+.....+|....... .+|.-+....+...+...- ...++..|..++.-|.+.-+
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 111 111112221222333222221 2455555555555554211 11233444444444432111
Q ss_pred ---------------------HHHHHHHHHHHHHCCCCCCh----------------------------hhHHHHHHHHH
Q 048258 341 ---------------------FEDALDCLSEMVEWGVPPNT----------------------------ITYNILIRSLC 371 (504)
Q Consensus 341 ---------------------~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~ 371 (504)
.....+..... .||. ..-+.++..++
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 01111111111 1111 01122333343
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCChhHH
Q 048258 372 AIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL--GLRPDNFSYSALIKALIKSGRFDEA 449 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 449 (504)
..-+..++...-+..... . =...|..|+.-+......+.|..+.++.... .+..|...+..+.+.+.+.+....+
T Consensus 471 se~n~lK~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 333444444333333221 1 1256788888888888899999888887643 2344556678888889999999999
Q ss_pred HHHHHHHHhcCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048258 450 KQTFLSMEQNGC-NP-DSYTSNLILETLVQQGRFEEAHDIVKTSKERGISF 498 (504)
Q Consensus 450 ~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 498 (504)
..+++++.+.-. .| ...++..++......|+.+.-.++.+-+...|+.-
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999998876321 22 23455667777778899988888888888777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.2e-10 Score=100.76 Aligned_cols=378 Identities=14% Similarity=0.050 Sum_probs=222.8
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh-hhHH
Q 048258 111 VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPES-STFD 189 (504)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 189 (504)
+.-+...|..+.-+...+|+++.+-+.|++.+..... ....|+.+...+...|....|..++++.......|+. ..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445566666666666777777777777666543222 3455666666666666666676666665443322322 2222
Q ss_pred HHHHHHHc-cCChhhHHHHHHHHHhc--CC--CccHHHHHHHHHHHHhc-----------CCcHHHHHHHHHHHhCCCCC
Q 048258 190 YTVTCLVT-GLDLNETCGILDTFIKR--GV--KPRFSTYLLLMEALYKA-----------GRDVEGDRYLNHVFKDRLVS 253 (504)
Q Consensus 190 ~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 253 (504)
.....|.+ .+..++++++-.++.+. +. ...+..+..+.-+|... ....++.+.++...+.++.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 22333332 35556666655555542 11 11223333333333321 1133455556666555543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC-CCCc---------
Q 048258 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLEC-GFKP--------- 323 (504)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------- 323 (504)
|+.+...+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+..... |...
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 333333334445556667777777776666644456666666666666667777777666655432 1100
Q ss_pred ---------cHHHHHHHHHHHH-----------------------hcCCHHHHHHHHHHHH--------HCC--------
Q 048258 324 ---------DKFTFNSMIDCLC-----------------------RAHRFEDALDCLSEMV--------EWG-------- 355 (504)
Q Consensus 324 ---------~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~-------- 355 (504)
...|...++..+- ...+..++......+. ..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0011111111110 0011111111111110 001
Q ss_pred -CC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 048258 356 -VP--PN------TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL 426 (504)
Q Consensus 356 -~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 426 (504)
.. |+ ...|......+.+.+..++|...+.+.... .+.....|......+...|.+.+|.+.|......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-- 713 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-- 713 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--
Confidence 11 11 113445566777888888898888888765 3456667777778888999999999999998885
Q ss_pred CCC-cccHHHHHHHHHhcCChhHHHH--HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 427 RPD-NFSYSALIKALIKSGRFDEAKQ--TFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 427 ~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.|+ ..+..++..++.+.|+..-|.. ++..+.+.+ +.+...|..++..+.+.|+.++|.+.|..+.+.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 555 5678899999999999888877 999999864 457889999999999999999999999998875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.1e-11 Score=97.56 Aligned_cols=415 Identities=13% Similarity=0.134 Sum_probs=210.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.++...+...|++++|..+|..+.+.. .++...+..|.-.+.-.|.+.+|..+-+...+ ++..-..++..-.+.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHh
Confidence 346677889999999999999988765 56777777777777778999999988776543 333334445555577
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHH-HHHHHhcCCChHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNT-LLYRLSNNSMASEAAAI 172 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~ 172 (504)
++-++...+.+.+... ..--.++.......-.+.+|.++|.+++..++.. ...|. +.-+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey--~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY--IALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh--hhhHHHHHHHHHhcchhhhHHHH
Confidence 7777776666666532 2333445555556667889999999988875542 22332 33456677777777777
Q ss_pred HHHHhhCCCCCChh-hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-----CCcHHHHHHHHHH
Q 048258 173 LRKMGDRGYLPESS-TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKA-----GRDVEGDRYLNHV 246 (504)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~ 246 (504)
++-.+.. .||+. ..+..+....+.-+-..|..-.+.+...+-.. .-.+.-+++. ..-+.|++++--+
T Consensus 208 l~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 208 LKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 7766654 23333 23333322222222222233233333222110 0011111111 2234445444443
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-----hcCCchHHHHHHHHHHHHCCC
Q 048258 247 FKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH-----CKDAEVHKTRELLVMLLECGF 321 (504)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~ 321 (504)
.+.- +..--.++-.|.+.++..+|..+.+++..- .|-......++.+- .......-|...|...-+.+.
T Consensus 281 ~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 281 MKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred HhhC----hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 3321 122223444566666666666666554321 22222222222211 111223344444444333332
Q ss_pred CccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 048258 322 KPDKF-TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNA 400 (504)
Q Consensus 322 ~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 400 (504)
.-|.. --..+.+++.-..++++.+..++.+...-...|...+ .+..+++..|++.+|+++|-++....++.+..-...
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 22211 1122333333444566666666665554222233333 355566666666666666665554433333333344
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 401 LIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS-YSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 401 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
|.++|.+.+.++.|++++-++-. +.+..+ ...+...|.+.+++=-|.+.|..+..
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 45556666666666665433321 111222 22333445555555555555555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-10 Score=99.91 Aligned_cols=433 Identities=14% Similarity=0.083 Sum_probs=286.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF 126 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (504)
.|..++.. ...+++...+++.+.+.+. .+....+.....-.+...|+-++|..........++ -+...|..+.-.+.
T Consensus 10 lF~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 34444444 4678999999999998874 344455555555556778999999999888887644 36678888888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHH
Q 048258 127 RCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETC 205 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 205 (504)
...++++|.+.|......++. +...+.-+...-.+.++++.....-..+.+. .| ....|..++.++.-.|+...|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998876 6677776666666777777776666666553 23 4456777888888899999999
Q ss_pred HHHHHHHhcCC-CccHHHHHHH------HHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 206 GILDTFIKRGV-KPRFSTYLLL------MEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEIC 278 (504)
Q Consensus 206 ~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 278 (504)
.+++...+... .|+...+... .......|..++|.+.+......-.. ....-..-...+.+.+++++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99999888752 4555544332 23445677778887766655433211 2223334556788999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHH-HHhcCCchHHHH-HHHHHHHHCCCCccHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC
Q 048258 279 REMRDRDIAPNLVTFNTLIS-GHCKDAEVHKTR-ELLVMLLECGFKPDKFTFNS-MIDCLCRAHRFEDALDCLSEMVEWG 355 (504)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (504)
..+... .||...|..... ++.+-.+..++. .+|....+.- |....-.. =++......-.+..-.++..+.+.|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 999987 456665555444 443333333333 5666554431 11111111 1111112223445556677777887
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHhH--HHHHHHHHccCCHHHHHHHHH
Q 048258 356 VPPNTITYNILIRSLCAIGDVARSLRLFQKMQ----ADR----------ISPDIYTF--NALIQSFCRMNKIEKAEKAFF 419 (504)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~ 419 (504)
+++- +..+...|-.-...+-..++...+. ..| -+|+...| -.++..+-..|+++.|..+++
T Consensus 319 ~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 7643 3333333322211111111111111 111 14555444 456677889999999999999
Q ss_pred HHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048258 420 SMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 420 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 496 (504)
.++.+ .|+ ...|..-.+.+...|++++|..++++..+.. .||..+-..-+.-..++++.++|.++.....+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99986 565 3445555678899999999999999999864 56777777888888999999999999998888764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-13 Score=108.82 Aligned_cols=231 Identities=9% Similarity=0.026 Sum_probs=197.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
-+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-++|.+..+++.|+.++.+-.+. .+-|+.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999998876 677888999999999999999999999998876 33455566778889999
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHH
Q 048258 128 CLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
.++.++|.++|+.+.+..+. ++.....+...|.-.++++-|+.+|+++++.|+. ++..|..+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999988665 5666666777788899999999999999999887 888999999999999999999999
Q ss_pred HHHHHhcCCCcc--HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 208 LDTFIKRGVKPR--FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 208 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
|++....--.|+ .++|..+.......|++..|.+.|+..+..+.. +...++.+.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 998887644443 467888888888899999999999998887655 6778888888888999999999999887765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-09 Score=95.45 Aligned_cols=222 Identities=12% Similarity=0.150 Sum_probs=141.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH-
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC- 91 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 91 (504)
.-+=+..+...|++++|.+...++...+ +.+...+..-+-++.+.++|++|+.+.+.-... ..+...+ +=.+||
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~ 89 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCE 89 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHH
Confidence 3355677888999999999999999876 667788888888999999999999665543321 1111111 234554
Q ss_pred -hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-chhHHHHHHHHHhcCCChHHH
Q 048258 92 -NAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT-QKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 92 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 169 (504)
+.+..++|+..++-.. ..+..+...-...+.+.|++++|+.+|+.+.+.+... +...-..++.+-. ...+
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 7899999999998322 1244466667788899999999999999997764431 2222112221110 0011
Q ss_pred HHHHHHHhhCCCCCChhhHHHH---HHHHHccCChhhHHHHHHHHHhcC-------CCc--c-----HHHHHHHHHHHHh
Q 048258 170 AAILRKMGDRGYLPESSTFDYT---VTCLVTGLDLNETCGILDTFIKRG-------VKP--R-----FSTYLLLMEALYK 232 (504)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------~~~--~-----~~~~~~l~~~~~~ 232 (504)
++.+. ....| ..+|..+ .-.++..|++.+|+++++.....+ -.. + ...-..+...+..
T Consensus 162 -~~~q~---v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 -QLLQS---VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred -HHHHh---ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11222 22222 3344433 445667899999999998883321 000 1 1133456677788
Q ss_pred cCCcHHHHHHHHHHHhCCCC
Q 048258 233 AGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~ 252 (504)
.|+..+|..+|..+++..+.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC
Confidence 89999999999888877644
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-09 Score=90.16 Aligned_cols=306 Identities=9% Similarity=0.010 Sum_probs=219.2
Q ss_pred CCCChhhHHHHHHHHHc--cCChhhHHHHHHHHHhc-CCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHH
Q 048258 181 YLPESSTFDYTVTCLVT--GLDLNETCGILDTFIKR-GVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNS 257 (504)
Q Consensus 181 ~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (504)
..|...+....+.+++. .++...+..++-.+... -++.+......+..++...|+..+|...|++..-.++. +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 34444455555554433 45555555555444443 35667788889999999999999999999998876544 4444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 048258 258 YNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR 337 (504)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (504)
.....-.+.+.|+.+....+...+.... ..+...|-.-........++..|+.+-++.++.+. .+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 4444555667888888888888776552 11333344444445567788899988888887642 244445444566788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HHHH-ccCCHHHHH
Q 048258 338 AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI-QSFC-RMNKIEKAE 415 (504)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~ 415 (504)
.+++++|.-.|+..+... +-+...|..|+.+|...|.+.+|..+-...... ++.+..+...+. ..+. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 899999999999988763 457889999999999999999998877776654 344555655552 3332 333458899
Q ss_pred HHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 416 KAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 416 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+++++..+. .|+ ....+.+...|...|..+.++.++++.+. ..||......|+..+...+.+++|.+.|..+++.
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 998888874 565 34456677788899999999999999887 4789999999999999999999999999988876
Q ss_pred C
Q 048258 495 G 495 (504)
Q Consensus 495 ~ 495 (504)
+
T Consensus 501 d 501 (564)
T KOG1174|consen 501 D 501 (564)
T ss_pred C
Confidence 5
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-09 Score=98.04 Aligned_cols=293 Identities=11% Similarity=0.084 Sum_probs=171.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc--
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA-- 93 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 93 (504)
....+...|++++|++.++.-.+. +.............+.+.|+.++|..+|..+...+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 445678889999999998775543 24445566777788889999999999999998885 33444455555544222
Q ss_pred ---CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 94 ---KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH-KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 94 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
...+....+|+++...- |.......+.-.+....++. .+...+...+..|.+ .+|+.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24667777888877652 44333333332222222222 233344444444432 4566666666655555444
Q ss_pred HHHHHHHhhC----C----------CCCCh--hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 048258 170 AAILRKMGDR----G----------YLPES--STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKA 233 (504)
Q Consensus 170 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (504)
.+++...... + -.|+. .++..+...|...|++++|++.++..+++. +..+..|..-++.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555444321 1 11222 233455566667777777777777777653 22356666667777777
Q ss_pred CCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHhcCCc
Q 048258 234 GRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVT--------FNTLISGHCKDAE 305 (504)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~ 305 (504)
|++.+|.+.++.+...+.. |...-+..+..+.+.|+.++|.+++......+..|-... ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777666544 555555666667777777777777776665543221111 1223445666666
Q ss_pred hHHHHHHHHHHH
Q 048258 306 VHKTRELLVMLL 317 (504)
Q Consensus 306 ~~~a~~~~~~~~ 317 (504)
+..|+..|..+.
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-11 Score=113.86 Aligned_cols=269 Identities=10% Similarity=0.019 Sum_probs=187.2
Q ss_pred CCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 048258 42 KPDRFTYNILIHGICR-----IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN---------AKRVAEVFRVLEIMK 107 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 107 (504)
+.+...|...+++-.. .+.+++|+.+|++..+.. +.+...|..+..++.. .+++++|...++++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666655322 234679999999998874 3345566666555442 244789999999998
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhh
Q 048258 108 ERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESST 187 (504)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (504)
+.+. .+...+..+...+...|++++|...|++..+..|. +...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 8753 36677888888888999999999999999988776 5567777888899999999999999998876433 2223
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048258 188 FDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK 267 (504)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (504)
+...+..+...|++++|+..+++......+.++..+..+..++...|+.++|...+.++....+. +....+.+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence 33344456668899999999998877643335556777888888999999999999887665433 45556666667777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC
Q 048258 268 VNMMDRATEICREMRDRD-IAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG 320 (504)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 320 (504)
.| +.|...++.+.+.. ..+....+ .-..+.-.|+.+.+..+ .++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777766542 12222222 33334555666666655 7776653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-10 Score=101.24 Aligned_cols=431 Identities=14% Similarity=0.072 Sum_probs=276.9
Q ss_pred HHHhcCCHHHHHHHHH----HhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 19 ALVKSNSIDLAYLKFQ----QMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
.++-..+.+++....- ++....+..+...|..+.-++...|+++.+.+.|++....- --....|..+...|...|
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag 371 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAG 371 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhc
Confidence 3344455555554332 22223345688888888888889999999999999877542 235567888888888888
Q ss_pred ChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHH-hcCChHHHHHHHHHHHhcC----CCcchhHHHHHHHHHhcC-----
Q 048258 95 RVAEVFRVLEIMKERNVCPN-EATVRSLVHGVF-RCLDPHKAFELLIRFMERE----PLTQKLVCNTLLYRLSNN----- 163 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~----- 163 (504)
.-..|..+++.-......|+ ...+......|. +.+..++++.+..++.... .......+..+.-+|...
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 88888888887765532243 334444444444 4466777777766666521 112233343343333321
Q ss_pred ------CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcH
Q 048258 164 ------SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 164 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
....++++.+++..+.+.. |+.....+.--|+..++++.|.+..++..+.+...+...+..++-.+...+++.
T Consensus 452 ~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 1235677777777665433 444444455567778889999999999888866778888888888888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------C-------CCCC
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR---------------------D-------IAPN 289 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~ 289 (504)
+|+.+.+..+..-.. |......-+..-...++.++++.....+... | ..-.
T Consensus 531 ~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 531 EALDVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 999988888765322 2222222222333356666666555444321 0 0001
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHCCC--Ccc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 048258 290 LVTFNTLISGHCKDAEVHKTRELLVMLLECGF--KPD------KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI 361 (504)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (504)
..++..+.......+....-... +..... .|+ ...|......+.+.+..++|...+.+..+. .+....
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~ 685 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSAS 685 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHH
Confidence 11111111111100000000000 111001 122 123445566677888899999888888776 355777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHH--HHHHHHhCCCCCCcccHHHHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEK--AFFSMLTLGLRPDNFSYSALIK 438 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~ 438 (504)
.|......+...|..++|.+.|...... .|+ +....++..++...|+..-|.. ++..+.+.+ +.+...|..+..
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 8888888889999999999999998875 454 5588899999999998877777 999999976 457889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 048258 439 ALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~~ 459 (504)
.+-+.|+.++|.+.|....+.
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHccchHHHHHHHHHHHhh
Confidence 999999999999999998864
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-11 Score=103.20 Aligned_cols=202 Identities=9% Similarity=-0.029 Sum_probs=137.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLV 122 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (504)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.+. .+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 345566667777777777777777777776653 33456666777777777777777777777776532 3445666667
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPL-TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDL 201 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (504)
..+...|++++|.+.+++....... .....+..+...+...|++++|.+.+.+....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 7777777777777777777654321 23345555667777778888888888777664322 445666777777788888
Q ss_pred hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 048258 202 NETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFK 248 (504)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (504)
++|...+++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888877766 344556666677777788888888877766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-10 Score=106.62 Aligned_cols=253 Identities=14% Similarity=0.111 Sum_probs=176.1
Q ss_pred HHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 048258 31 LKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 110 (504)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-+..+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667778899999999999999999999999998 9999988887888889999999888888877766
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHH----HHhc----CCC-cchhHH-------------HHHHHHHhcCCChHH
Q 048258 111 VCPNEATVRSLVHGVFRCLDPHKAFELLIR----FMER----EPL-TQKLVC-------------NTLLYRLSNNSMASE 168 (504)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~----~~~-~~~~~~-------------~~l~~~~~~~~~~~~ 168 (504)
.|.+.+|..|..+|...||... ++..++ +... |.. +....+ ...+......|.++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5788899999999999999765 333222 2211 111 001111 112233344555666
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 048258 169 AAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFK 248 (504)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (504)
+++++..+...... .++..+++-+... .....++........-.|++.++..++.+-...|+.+.|..++..|.+
T Consensus 158 llkll~~~Pvsa~~---~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN---APFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCCccccc---chHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 66666555432211 1111123333322 222333333333322258889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 048258 249 DRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA 304 (504)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (504)
.|++.+..-|-.++-. .++...+..+++-|.+.|+.|+..|+...+..+.++|
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9988777766666544 7888888999999999999999999887776666644
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-08 Score=85.53 Aligned_cols=295 Identities=11% Similarity=0.016 Sum_probs=217.2
Q ss_pred HhcCCChHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHH
Q 048258 160 LSNNSMASEAAAILRKMGDRG-YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVE 238 (504)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (504)
.+-.++...+...+-.+.... ++-|++....+..++...|+.++|+..|++....+ +-...........+...|+.+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence 344555555555544443332 44577788899999999999999999999887753 2234445555566778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHH
Q 048258 239 GDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLE 318 (504)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (504)
...+...++..... ....|-.-+.......+++.|+.+-++..+.+.. +...+-.-...+...+++++|.-.|.....
T Consensus 285 ~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 88888777754322 3334444445555678899999999888776433 445555556678889999999999988876
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-H
Q 048258 319 CGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILI-RSLC-AIGDVARSLRLFQKMQADRISPD-I 395 (504)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~ 395 (504)
.. +.+..+|.-|+.+|...|.+.+|...-+...+. ++.+..+...+. ..+. ...--++|.++++..... .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 53 347889999999999999999999888877765 455677776663 3332 233457899999888774 565 3
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 048258 396 YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS 465 (504)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 465 (504)
...+.+...+...|..+++..++++.... .||....+.|.+.+...+.+++|...|..++.. .|..
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 47778888899999999999999998874 788888899999999999999999999999874 4543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-10 Score=111.02 Aligned_cols=250 Identities=13% Similarity=0.039 Sum_probs=172.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc
Q 048258 235 RDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK---------VNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305 (504)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (504)
..++|...++++.+..+. +...|..+..++.. .+++++|...+++..+.++. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 357888889988887655 55666666554442 24478999999998887543 67778888888888999
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQK 385 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 385 (504)
+++|...+++..+.+ +.+...+..+..++...|++++|+..++++.+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999988875 335667778888889999999999999999886422 333333445556668899999999998
Q ss_pred HHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCC
Q 048258 386 MQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN-FSYSALIKALIKSGRFDEAKQTFLSMEQNG-CNP 463 (504)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 463 (504)
+.+...+.+...+..+..++...|++++|...+.++... .|+. ...+.+...|...| ++|...++.+.+.. -.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 876532224445677778888899999999999887654 3443 33445555666666 47777777766431 122
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 464 DSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
....+ ....+.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22222 33344455666666655 7776654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-11 Score=100.41 Aligned_cols=229 Identities=13% Similarity=0.080 Sum_probs=117.9
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKV 268 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (504)
+.+.++|.+.|-+.+|.+.++..++. .|-+.+|..+..+|.+..++..|+.++.+.++.-+. ++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 34555555556666665555555543 344455555555555555555555555555544322 333333444555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 269 NMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCL 348 (504)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (504)
++.++|.++++...+.. +.+......+...|.-.++++-|...|.++.+.|.. ++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555555443 224444444444555555555555555555555543 5555555555555555555555555
Q ss_pred HHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 349 SEMVEWGVPPNT--ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 349 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
++....--.|+. ..|..+.......||+..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++.+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555543222222 234445555555555555555555554442 22344555555555555555555555555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.4e-11 Score=100.03 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=113.3
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC 371 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (504)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444445555555555555555554432 1234445555555566666666666666655542 224445555566666
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 048258 372 AIGDVARSLRLFQKMQADRI-SPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (504)
..|++++|.+.++++..... ......+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666654321 1123345555666667777777777777766642 223445666666677777777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 451 QTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
..+++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777776654 233445555566666677777777777666554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-09 Score=99.26 Aligned_cols=290 Identities=18% Similarity=0.212 Sum_probs=157.4
Q ss_pred HHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 048258 194 CLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKV----- 268 (504)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 268 (504)
.+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.++. +..-|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 334455555555555443332 2333344455555566666666666666666655543 444444444443211
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCch-HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 048258 269 NMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEV-HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDC 347 (504)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (504)
.+.+...++++++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|.......-...+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23555566666665442 2222222222222221222 2333344445555543 2344444444444444444444
Q ss_pred HHHHHHC--------------CCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCC
Q 048258 348 LSEMVEW--------------GVPPNTI--TYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNK 410 (504)
Q Consensus 348 ~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 410 (504)
+...... .-+|+.. ++..+...|...|++++|++++++.+++ .|+ +..|..-.+.+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 4443321 0123332 3355566677788888888888887776 444 5577777777788888
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh------hH--HHHHHHHHhcCCHH
Q 048258 411 IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSY------TS--NLILETLVQQGRFE 482 (504)
Q Consensus 411 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~ 482 (504)
+.+|.+.++.+.... .-|...-+..+..+.+.|++++|.+++......+..|-.. .| ...+.+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888888888777754 2344445556666777888888888887777655434221 12 33467777888888
Q ss_pred HHHHHHHHHHH
Q 048258 483 EAHDIVKTSKE 493 (504)
Q Consensus 483 ~a~~~~~~~~~ 493 (504)
.|.+.+....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88777766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-08 Score=87.17 Aligned_cols=421 Identities=10% Similarity=0.084 Sum_probs=246.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 048258 49 NILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC 128 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (504)
-+=++.+..+|++++|.+...++...+ +.|...+..=+-++.+.+++++|+.+.+.-... ..+..-+..-+-+..+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 334667788899999999999999876 445566666666788999999999666554321 11111112334455688
Q ss_pred CChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHHHH
Q 048258 129 LDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
+..++|+..++-.... +..+...-...+.+.+++++|+++|+.+.+.+..- +...-..++..-.. ..+. +
T Consensus 93 nk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-L 163 (652)
T ss_pred ccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-H
Confidence 9999999988832221 33355555677889999999999999997764331 11111222211111 1111 1
Q ss_pred HHHHHhcCCCc--cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHhcCCH
Q 048258 208 LDTFIKRGVKP--RFSTYLLLMEALYKAGRDVEGDRYLNHVFKD-------RLVSNVN-------SYNMVIDCFCKVNMM 271 (504)
Q Consensus 208 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~l~~~~~~~~~~ 271 (504)
+......| +...+......+...|++.+|+++++...+. +-..+.. .-..+.-.+...|+-
T Consensus 164 ---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 164 ---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred ---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 12222222 3455666677788999999999999988321 1110111 122344566788999
Q ss_pred HHHHHHHHHHHhCCCCCChhh----HHHHHHHHhcCCchHH--------------HHHHHHHH-----------------
Q 048258 272 DRATEICREMRDRDIAPNLVT----FNTLISGHCKDAEVHK--------------TRELLVML----------------- 316 (504)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~--------------a~~~~~~~----------------- 316 (504)
++|..++......... |... -|.++. +....++.. +..+...+
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887533 3211 122211 111111000 00000000
Q ss_pred ------------HHC-CCCccHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048258 317 ------------LEC-GFKPDKFTFNSMIDCLC--RAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLR 381 (504)
Q Consensus 317 ------------~~~-~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 381 (504)
... +..| ...+..++..+. +...+..+..++...-+........+.-..+......|+++.|.+
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 000 0111 223333433322 222466777777777665333234455666777788999999999
Q ss_pred HHH--------HHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCcc----cHHHHHHHHHhcCChh
Q 048258 382 LFQ--------KMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL--GLRPDNF----SYSALIKALIKSGRFD 447 (504)
Q Consensus 382 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~ 447 (504)
++. .+.+.+.. +.+..++...+.+.++.+.|..++.+.+.. .-.+... ++.-++..-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 998 44444333 345556666777777777777777666542 0012222 2333334445679999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 448 EAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 448 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
+|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 476 ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 476 EASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999863 66888888888888875 466776665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-09 Score=86.01 Aligned_cols=363 Identities=14% Similarity=0.108 Sum_probs=231.9
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 048258 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNV 80 (504)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 80 (504)
|.-.|+.-...-+++++..+.+..++++|++++..-.+.. +.+....+.+..+|....++..|-+.++++... .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 4445666666668888989999999999999998887774 447888899999999999999999999999876 4554
Q ss_pred HhHHH-HHHHHHhcCChhhHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHH
Q 048258 81 YTYTI-LIDGFCNAKRVAEVFRVLEIMKERNVCPNE--ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLL 157 (504)
Q Consensus 81 ~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (504)
.-|.. -.+.+-+.+.+..|+.+...|... ++. .+...-.....+.+|+..+..++++....+ +..+.+...
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g 151 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence 44432 245566889999999999888753 121 122222233446788888888888765432 444555555
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHH----HHHHHHHhc
Q 048258 158 YRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYL----LLMEALYKA 233 (504)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~ 233 (504)
....+.|++++|.+-|+...+-+--.....|+..+ +..+.++++.|++...+++++|++..+..-. ..+++- ..
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-sv 229 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SV 229 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cc
Confidence 56678999999999999987754433455565554 4456789999999999999988653322110 000000 00
Q ss_pred CCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCchHHHHHH
Q 048258 234 GRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRD-IAPNLVTFNTLISGHCKDAEVHKTREL 312 (504)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (504)
|+. ... ..++ -+..+|.-...+.+.++++.|.+.+-+|..+. ...|+.|...+.-. -..+++....+-
T Consensus 230 gNt---~~l----h~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~K 298 (459)
T KOG4340|consen 230 GNT---LVL----HQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEK 298 (459)
T ss_pred cch---HHH----HHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHH
Confidence 000 000 0000 12344555556678899999999888886553 34466776655422 223455556666
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 048258 313 LVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-PPNTITYNILIRSLC-AIGDVARSLRLFQKMQ 387 (504)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 387 (504)
+.-+.+..+ -...||..++-.|++..-++-|-+++.+-..... -.+...|+ ++.++. ..-..++|.+-+..+.
T Consensus 299 LqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 299 LQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 666666544 3467888888889999888888888765432211 11233333 333333 3345666666555543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-09 Score=85.34 Aligned_cols=391 Identities=13% Similarity=0.059 Sum_probs=200.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
+++..+.+..+++.|++++..-.+++. .+...+..+..+|....++..|-..|+++-...|.....-+. -...+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY-~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY-QAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HHHHHHHhc
Confidence 333334444445555555444444421 133344444444555555555555555444433321111110 122334455
Q ss_pred ChHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESS--TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (504)
.+..|+++...|.+. |+.. ....-.......+|+..+..++++.... .+..+.....-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 555666665555442 1111 1111112233456666666666655432 2455555566666777888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------Ch---------------hhHH
Q 048258 243 LNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-------------NL---------------VTFN 294 (504)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~ 294 (504)
|+...+.+--.....|+..+. ..+.++++.|+++..++.++|++. |. ..+|
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 877776554435556665443 345677888888887777665421 11 1123
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 295 TLISGHCKDAEVHKTRELLVMLLE-CGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
.-...+.+.++.+.|.+.+-.|.. .....|++|...+.-. ...+++....+-++-+...+. -...||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 333345678888888888887752 2334577777665422 234556666666666666543 3456888888899998
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HhcCCh---
Q 048258 374 GDVARSLRLFQKMQADRI-SPDIYTFNALIQSFC-RMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKAL--IKSGRF--- 446 (504)
Q Consensus 374 g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~--- 446 (504)
.-++.|-+++.+-..... -.+...|+.| .++. -.-..++|.+-+..+...- ....-...+..- ...++-
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHH
Confidence 888888887765332211 1233334333 3333 3445666666555443310 000000111111 111111
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 447 DEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 447 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
..+++-+++..+. =..+...-.+.+.+..++..+++.|..-.+-
T Consensus 400 R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 400 RKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1222222222221 1123334456677788899999998876654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-09 Score=98.65 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=112.1
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhc-----C--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC-----C-CCC-H
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKR-----G--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR-----L-VSN-V 255 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~-~ 255 (504)
.+...|...+++.+|..+|+++... | .+--..++..|..+|.+.|++.+|..+++.+.+-- . .+. .
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3556667777777777777766543 1 11123456666777777777777776665554310 0 001 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCL 335 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (504)
..++.+...+...+++++|..+++...+. +.......-..-..+++.|...|
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i----------------------------~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKI----------------------------YLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHH----------------------------HHhhccccchHHHHHHHHHHHHH
Confidence 12333344444445555555554432221 11000000001234666777777
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHhHHHHH
Q 048258 336 CRAHRFEDALDCLSEMVEW----GVP---PNTITYNILIRSLCAIGDVARSLRLFQKMQAD----RI-SPD-IYTFNALI 402 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~ 402 (504)
...|++++|.+++++++.. +.. -....++.+...|.+.+++++|.++|.+.... |. .|+ ..+|..|.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 7777777777777766542 111 11234566777777777777777777664321 11 222 34777778
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 048258 403 QSFCRMNKIEKAEKAFFSML 422 (504)
Q Consensus 403 ~~~~~~g~~~~a~~~~~~~~ 422 (504)
..|...|+++.|.++.+...
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 88888888888887776665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-09 Score=84.16 Aligned_cols=199 Identities=10% Similarity=-0.007 Sum_probs=135.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF 126 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (504)
+...|.-.|...|++..|..-+++..+.+ +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+++.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34455666777777777777777777664 3355567777777777777777777777777653 235556677777777
Q ss_pred hcCChHHHHHHHHHHHhcCCC-cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHH
Q 048258 127 RCLDPHKAFELLIRFMEREPL-TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETC 205 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (504)
..|++++|.+.|++.+....- ....+|..+..+..+.|+.+.|...|++.++.... ...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 777777777777776654221 23456666777777777777777777777665322 3455666777777788888888
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 206 GILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
..++.....+. ++..++...++.--..|+...+-++=.++.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88887777764 77777777777777778877776665555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-12 Score=76.56 Aligned_cols=49 Identities=53% Similarity=1.018 Sum_probs=28.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
||..+||.++++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-08 Score=89.69 Aligned_cols=413 Identities=13% Similarity=0.122 Sum_probs=212.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcCC
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN-VYTYTILIDGFCNAKR 95 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 95 (504)
..+.+..|+++.|+..|-...... ++|-..|..-..+|...|++++|++=-.+..+. .|+ +..|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 356678899999999999998887 668888999999999999999998877777665 455 5679999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH---HHHHHHHhcCCC----cchhHHHHHHHHHhcC-----
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAF---ELLIRFMEREPL----TQKLVCNTLLYRLSNN----- 163 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~----~~~~~~~~l~~~~~~~----- 163 (504)
+++|+..|.+-++.. +.+...+..+..++.......+.+ .++..+.. .|. .....|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~-~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN-LPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc-ChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999988873 234455666666651110000000 00000000 000 0111122222111110
Q ss_pred -----CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHcc-CChh----hHHHHHHHHHh-cCCCccHHHHHHHHHHHHh
Q 048258 164 -----SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTG-LDLN----ETCGILDTFIK-RGVKPRFSTYLLLMEALYK 232 (504)
Q Consensus 164 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 232 (504)
.+...+.-.+...... .+...-...... .... .......+..+ ...+.-..-...++.+..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~-------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDEL-------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cccccHHHHHHHHHHhcCccc-------cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 0011111111000000 000000000000 0000 00000000000 0001112335567778888
Q ss_pred cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-------HHHHHhcCCc
Q 048258 233 AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNT-------LISGHCKDAE 305 (504)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~ 305 (504)
..++..+.+.+....... .+..-++....+|...|.+.++........+.|-. ...-|+. +..+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 888889999888888766 36667777778888888888888777776665432 2222222 3335556677
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT-ITYNILIRSLCAIGDVARSLRLFQ 384 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 384 (504)
.+.++..|.+.......|+.. .+....+++........-.+ |.. .-...-...+.+.|++..|+..|.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 788888887765543333221 11222233333332222211 111 011111344445555555555555
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 385 KMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
++++.. +.|...|..-.-+|.+.|.+..|+.--+..++. .|+ ...|..=..++....++++|.+.|++.++
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555543 334455555555555555555555555555543 222 22233333333334455555555555555
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-09 Score=82.16 Aligned_cols=196 Identities=15% Similarity=0.046 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN 162 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (504)
...|.-.|.+.|++..|.+-+++..+.+. .+..++..+...|-+.|+.+.|.+.|++.+...|. +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 34444455555666666666666555531 13335555555555556666666555555555444 44455555555555
Q ss_pred CCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHH
Q 048258 163 NSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (504)
.|++++|...|++......-| -..+|..+.-+..+.|+.+.|.+.+++.++.. +....+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 555555555555554432211 22344444444555555555555555544442 2223334444444444455544444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
.++.....+. ++..+.-..|+.--+.|+-+.+-++=.++.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444444333 344444444444444444444444444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-09 Score=89.79 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHhhhCC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHH
Q 048258 24 NSIDLAYLKFQQMSVDQ-CKP--DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVF 100 (504)
Q Consensus 24 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 100 (504)
+..+.++..+.++.... ..| ....|..+...+...|++++|+..|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44556666666666432 111 13345566666677777777777777776654 335667777777777777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCC
Q 048258 101 RVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (504)
..|++..+.+. .+..++..+..++...|++++|.+.+++.....|.... ...........++.++|.+.|.+.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~--~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY--RALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 77777766532 23445666666666777777777777777766554221 1111122334556677777775543221
Q ss_pred CCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc---CC---CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 048258 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR---GV---KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRL 251 (504)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (504)
.|+. +.. .......|+...+ +.++.+.+. .. +.....|..+...+.+.|++++|...|+++....+
T Consensus 196 -~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 -DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1221 111 1122223444332 233333221 00 11223555566666666666666666666665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-09 Score=96.76 Aligned_cols=235 Identities=14% Similarity=0.049 Sum_probs=117.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-----C-CCCChhh-HHHHHHHHHhcCChHHHHHHHHHHHhc-----CC--C
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKER-----N-VCPNEAT-VRSLVHGVFRCLDPHKAFELLIRFMER-----EP--L 147 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~ 147 (504)
+...+...|...|+++.|..+++...+. | ..|...+ ...+...|...+++++|..+|+++... |. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444566666666666666666665543 1 1122222 223555666666666666666665542 11 1
Q ss_pred cchhHHHHHHHHHhcCCChHHHHHHHHHHhhC-----C-CCCCh-hhHHHHHHHHHccCChhhHHHHHHHHHhcC---CC
Q 048258 148 TQKLVCNTLLYRLSNNSMASEAAAILRKMGDR-----G-YLPES-STFDYTVTCLVTGLDLNETCGILDTFIKRG---VK 217 (504)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~ 217 (504)
.-..+++.|...|.+.|++++|...+++..+. + ..|.. ..++.+...+...+++++|..+++...+.- +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 22345666666677777777766666554321 1 11222 234556667777788888888777554420 11
Q ss_pred c----cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 048258 218 P----RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR----L---VSNVNSYNMVIDCFCKVNMMDRATEICREMRDR-- 284 (504)
Q Consensus 218 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 284 (504)
+ -..++..+...|...|++.+|.+.++.++... . .-....++.+...|.+.+++.+|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 12345555555555555555555555554321 0 111223444555555555555555555433211
Q ss_pred --CC--CCChhhHHHHHHHHhcCCchHHHHHHHHHH
Q 048258 285 --DI--APNLVTFNTLISGHCKDAEVHKTRELLVML 316 (504)
Q Consensus 285 --~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (504)
|+ +....+|..|...|.+.|+++.|.++.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 11 111234444444444444444444444433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=9e-12 Score=75.11 Aligned_cols=50 Identities=38% Similarity=0.730 Sum_probs=48.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR 57 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (504)
||..+||++|.+|++.|++++|.++|++|.+.|++||..+|+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.5e-09 Score=89.87 Aligned_cols=197 Identities=16% Similarity=0.066 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..|..+...+.+.|+++.|...|++..+.. +.+...|+.+...+...|++++|+..|++..+.. +.+..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4557788888999999999999999999886 6678999999999999999999999999999874 3356788888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
+...|++++|.+.|+...+.+ |+..............+++++|.+.+.+....... +...+ .+. ....|+..++
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~-~~~~~-~~~--~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDK-EQWGW-NIV--EFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCc-cccHH-HHH--HHHccCCCHH
Confidence 999999999999999999874 44332222222344578899999999776544322 22222 222 2234444433
Q ss_pred HHHHHHHh---hCCCC---CChhhHHHHHHHHHccCChhhHHHHHHHHHhcC
Q 048258 170 AAILRKMG---DRGYL---PESSTFDYTVTCLVTGLDLNETCGILDTFIKRG 215 (504)
Q Consensus 170 ~~~~~~~~---~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (504)
+.+..+. +.... .....|..+...+...|++++|+..|++....+
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 21111 123578889999999999999999999999875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-07 Score=84.26 Aligned_cols=144 Identities=14% Similarity=0.227 Sum_probs=97.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 048258 324 DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQ 403 (504)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (504)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++..+.+..-.|... ..|+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3456667777777777777776655443 266678888888888888888888887777664444443 46777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEE 483 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 483 (504)
+|++.++..+.++++ ..||......+.+-|...|.++.|.-+|.... .|..+...+...|+++.
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHH
Confidence 788888877766653 25677777777777888887777776665433 35666677777777777
Q ss_pred HHHHHHHH
Q 048258 484 AHDIVKTS 491 (504)
Q Consensus 484 a~~~~~~~ 491 (504)
|.+..+++
T Consensus 1239 AVD~aRKA 1246 (1666)
T KOG0985|consen 1239 AVDAARKA 1246 (1666)
T ss_pred HHHHhhhc
Confidence 76655443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-07 Score=76.80 Aligned_cols=317 Identities=11% Similarity=0.027 Sum_probs=193.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh-HHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEAT-VRSLV 122 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 122 (504)
++.--.-+...+...|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.=+++..+. +||-.. -..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44444556677777888888888888877642 112223333345567778888888888877765 566442 22334
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN 202 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (504)
..+.+.|.++.|..-|+.+++..+... ...++..-+..+.+ .......+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~---------------~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNG---------------LVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcc---------------hhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchh
Confidence 566788888888888888887765421 11111111111110 111233445556667777
Q ss_pred hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 203 ETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
.+++.+..+++.. +-|...+..-..+|...|++..|+.-++.+.+.... +...+..+...+...|+.+.++...++..
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7777777777753 456666777777777777777777777666655433 45555556666677777777777777766
Q ss_pred hCCCCCChhhH----HH---H------HHHHhcCCchHHHHHHHHHHHHCCCCccHH---HHHHHHHHHHhcCCHHHHHH
Q 048258 283 DRDIAPNLVTF----NT---L------ISGHCKDAEVHKTRELLVMLLECGFKPDKF---TFNSMIDCLCRAHRFEDALD 346 (504)
Q Consensus 283 ~~~~~~~~~~~----~~---l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~ 346 (504)
+.+ ||...+ .. + +......++|.++.+..+...+........ .+..+-.++...+++.+|++
T Consensus 251 Kld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred ccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 552 332211 11 1 112334566777777777776654332222 33444556667778888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 347 CLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
...+..+.. +.|..++.--..+|.-...++.|+.-|+.+.+.
T Consensus 329 qC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 329 QCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888887752 334777777777888777888888888888775
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-07 Score=83.21 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 445 RFDEAKQTFLSMEQNGCNPD----SYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 445 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+....++-...|.....-|| ..+|..++..+....+|+.|-+.++.|..+-
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 44555555556665433332 3467788899999999999999999988763
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-07 Score=83.81 Aligned_cols=93 Identities=10% Similarity=-0.048 Sum_probs=55.5
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHH
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-SN--VNSYNMVIDCFC 266 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~ 266 (504)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.....+. ++ ...|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 44455566666666666666666653 334455666666666777777777776666654322 11 123445566666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 048258 267 KVNMMDRATEICREMRD 283 (504)
Q Consensus 267 ~~~~~~~a~~~~~~~~~ 283 (504)
..|++++|..++++...
T Consensus 198 ~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 198 ERGDYEAALAIYDTHIA 214 (355)
T ss_pred HCCCHHHHHHHHHHHhc
Confidence 77777777777776643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-07 Score=84.65 Aligned_cols=199 Identities=16% Similarity=0.033 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQC-KPDR-FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
..|..+...+...|+.+.+...+....+... .++. .........+...|++++|...+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455566677777888887777777655431 1222 222223344567889999999999887763 334444442 22
Q ss_pred HHH----hcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 89 GFC----NAKRVAEVFRVLEIMKERNVCPN-EATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 89 ~~~----~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
.+. ..+....+.+.++.. ....|+ ......+...+...|++++|.+.+++..+..|. +...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 222 234445555555441 111223 334445666778888999999999888887765 456677778888888
Q ss_pred CChHHHHHHHHHHhhCCCC-CCh--hhHHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 164 SMASEAAAILRKMGDRGYL-PES--STFDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
|++++|...+++....... |+. ..+..+...+...|++++|...++.....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8888888888887654321 222 23445667777788888888888776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-07 Score=82.59 Aligned_cols=406 Identities=12% Similarity=0.056 Sum_probs=243.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCh
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVFRCLDP 131 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 131 (504)
.+.+..|+++.|+..|.+..... ++|...|..-..+|+..|++++|++=-.+..+. .|+. ..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45567899999999999999886 558888999999999999999998877776665 3443 4788889999999999
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHH-HHHHHHhhCCCCCChhhHHHHH-----HHHHccCChhhHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAA-AILRKMGDRGYLPESSTFDYTV-----TCLVTGLDLNETC 205 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~ 205 (504)
++|+..|.+-++..+. +...++-+..++. .+.+. +.|. ++..+..+. ..+.....+...+
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~----~~~~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYL----EDYAADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhh----HHHHhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 9999999998888766 6666666666651 11111 1110 111111111 1111111111111
Q ss_pred HHHHHHHhc-CCCc-cHHHHHHHHHHHHhcCCcHHHHHH-HHHH-HhCCCCC----------------------CHHHHH
Q 048258 206 GILDTFIKR-GVKP-RFSTYLLLMEALYKAGRDVEGDRY-LNHV-FKDRLVS----------------------NVNSYN 259 (504)
Q Consensus 206 ~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~-~~~~~~~----------------------~~~~~~ 259 (504)
+.++.-... +... ++. ++.+.......+.-... -..+ ...+..| -..-..
T Consensus 153 ~~~~~~p~~l~~~l~d~r----~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPR----LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHhhcCcHhhhcccccHH----HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 111100000 0000 111 11111100000000000 0000 0000000 011234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHH-------H
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSM-------I 332 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~ 332 (504)
.+.++..+..+++.|++-+....+.. .+..-++....+|...|.+..+...-+...+.|.. ...-|+.+ .
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 56666667778888888887777664 25555666677778888777777766666555432 22223333 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHccCCH
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDI-YTFNALIQSFCRMNKI 411 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 411 (504)
.+|.+.++++.++..|++.......|+. ..+....+++....+...-. .|.. .-...-...+.+.|++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCH
Confidence 3455567778888888876654333221 12223344444444443332 2322 1222235667889999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 412 EKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
..|...|.+++... +-|...|....-+|.+.|.+..|+.-.+...+.. ++....|..-+.++....+|+.|.+.|+..
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 4567889999999999999999999999988862 334567777788888889999999999998
Q ss_pred HHcC
Q 048258 492 KERG 495 (504)
Q Consensus 492 ~~~~ 495 (504)
++.+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 8865
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-07 Score=85.33 Aligned_cols=465 Identities=10% Similarity=-0.004 Sum_probs=279.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
+..|.+. +...|+..|-+..+.+ +.-...|..|...|+..-+..+|.+.|+...+.+ ..+...+......|++..++
T Consensus 466 a~~~~rK-~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 466 ALGCMRK-NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHhhh-hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccH
Confidence 3344433 3777788777777665 3345678999999998889999999999999886 45788899999999999999
Q ss_pred hhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNV-CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+.|..+.-..-+... ..-...|....-.|...++...|..-|+......|. +...|..+..+|.+.|++..|+++|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 999998444333211 011122334555677889999999999999988776 788999999999999999999999988
Q ss_pred HhhCCCCCChhhHHHH--HHHHHccCChhhHHHHHHHHHhc------CCCccHHHHHHHHHHHHhcCCcHHH-------H
Q 048258 176 MGDRGYLPESSTFDYT--VTCLVTGLDLNETCGILDTFIKR------GVKPRFSTYLLLMEALYKAGRDVEG-------D 240 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a-------~ 240 (504)
.... +|+ .+|... ...-+..|.+.+++..+..+... +...-..++......+...|-...+ +
T Consensus 622 As~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 622 ASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 7654 333 233322 23445679999999988877653 1122233444444444433433333 3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH------HHHHHH-HHHHhCCC--------------------CCChhhH
Q 048258 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD------RATEIC-REMRDRDI--------------------APNLVTF 293 (504)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~~~~~~~--------------------~~~~~~~ 293 (504)
+.|.-........+...|-.+-.++.-.-..+ ....++ .+....+. ..+..+|
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 33333333322223333322222211100000 001111 11111111 1123344
Q ss_pred HHHHHHHhc-------CC-chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 048258 294 NTLISGHCK-------DA-EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNI 365 (504)
Q Consensus 294 ~~l~~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (504)
..++..|.+ .+ +...|...+....+... .+..+|+.|.- ....|.+.-|...|-+-.... +.+..+|..
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGV-lsg~gnva~aQHCfIks~~se-p~~~~~W~N 855 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGV-LSGIGNVACAQHCFIKSRFSE-PTCHCQWLN 855 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHH-hhccchhhhhhhhhhhhhhcc-ccchhheec
Confidence 444433332 12 22356666666655421 24555555543 355677777777777666542 446677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCcccHHHHHHHHH
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT----LGLRPDNFSYSALIKALI 441 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~ 441 (504)
+...+.+..+++-|...|....... +.+...|..........|+.-++..+|..-.+ .|--|...-|-.....-.
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 8888888899999999998888753 34555666665556677888888888766222 222333333333333344
Q ss_pred hcCChhHHHHHHHHHHh---------cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 442 KSGRFDEAKQTFLSMEQ---------NGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 442 ~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 492 (504)
..|+.++-+...+++.. .+.+.+...|...+..+.+.+.+.+|.+...++.
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55665554443333321 1234455677777777778888888877777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.3e-07 Score=90.82 Aligned_cols=336 Identities=14% Similarity=0.080 Sum_probs=212.5
Q ss_pred HHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCC------Ccc--HHHHHHHHHHH
Q 048258 159 RLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGV------KPR--FSTYLLLMEAL 230 (504)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~ 230 (504)
.....|+.+.+...+..+.......+..........+...|+++++...+......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766653221111223333444556678999999999887755311 111 12233344566
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHh
Q 048258 231 YKAGRDVEGDRYLNHVFKDRLVSNV----NSYNMVIDCFCKVNMMDRATEICREMRDRDI-----APNLVTFNTLISGHC 301 (504)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 301 (504)
...|++++|...++.........+. ...+.+...+...|++++|...+.+...... .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999988764222222 2345566677789999999999988764311 111234455667788
Q ss_pred cCCchHHHHHHHHHHHH----CCCC--c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHH
Q 048258 302 KDAEVHKTRELLVMLLE----CGFK--P-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWG--VPP--NTITYNILIRSL 370 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 370 (504)
..|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998887653 2211 1 22334455566777899999999998876531 111 233455566677
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHH--hH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc----cHHHHHHHH
Q 048258 371 CAIGDVARSLRLFQKMQADR--ISPDIY--TF--NALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF----SYSALIKAL 440 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~ 440 (504)
...|++++|...+.++.... ...... .. ...+..+...|+.+.|..++........ .... .+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHH
Confidence 88999999999998875421 111110 10 1122344568899999998877554211 1111 134566778
Q ss_pred HhcCChhHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 441 IKSGRFDEAKQTFLSMEQN----GCNPD-SYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 441 ~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8899999999999988753 22222 2356677888999999999999999988753
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.8e-07 Score=90.97 Aligned_cols=376 Identities=10% Similarity=-0.045 Sum_probs=215.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+......+...|++..|...+...... ..-..............|++..+..+++.+.......+..........+..
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 344455566667776666544443211 000011112223345567777777777665321111122222333444556
Q ss_pred cCChhhHHHHHHHHHHcCC------CCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcch----hHHHHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNV------CPNE--ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQK----LVCNTLLYRL 160 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 160 (504)
.|+++++...++.....-- .+.. .....+...+...|++++|...+++.....+..+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 7888888888887754310 0111 12222334556788999999988887764222221 2345556667
Q ss_pred hcCCChHHHHHHHHHHhhCCCC---C--ChhhHHHHHHHHHccCChhhHHHHHHHHHhc----CCC--c-cHHHHHHHHH
Q 048258 161 SNNSMASEAAAILRKMGDRGYL---P--ESSTFDYTVTCLVTGLDLNETCGILDTFIKR----GVK--P-RFSTYLLLME 228 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~ 228 (504)
...|++++|...+.+....... + .......+...+...|++++|...+++.... +.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 7889999998888877542111 1 1234455566778889999998888776653 211 1 1233445566
Q ss_pred HHHhcCCcHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhH-----HHHHH
Q 048258 229 ALYKAGRDVEGDRYLNHVFKDR----LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-NLVTF-----NTLIS 298 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~ 298 (504)
.+...|++++|...+....... .......+..+...+...|+++.|...+.......... ....+ ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 6777899999988887765431 11123344445667778899999988887775421100 11111 11123
Q ss_pred HHhcCCchHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHH
Q 048258 299 GHCKDAEVHKTRELLVMLLECGFKPD---KFTFNSMIDCLCRAHRFEDALDCLSEMVEW----GVPP-NTITYNILIRSL 370 (504)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 370 (504)
.+...|+.+.|...+........... ...+..+..++...|++++|...+++.... +... ...+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34557888888888766543211111 111345566677888888988888877642 2221 123556667778
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 048258 371 CAIGDVARSLRLFQKMQADR 390 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~ 390 (504)
...|+.++|...+.+..+..
T Consensus 742 ~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 88899999998888887653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=87.27 Aligned_cols=251 Identities=11% Similarity=0.069 Sum_probs=151.6
Q ss_pred HHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048258 193 TCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD 272 (504)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (504)
+-+.-.|++..++.-.+ ........+......+.+++...|++..++. .+... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34445667776665554 2222222234455666777777787664432 23222 2555666655555554445555
Q ss_pred HHHHHHHHHHhCCCC-CChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 273 RATEICREMRDRDIA-PNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEM 351 (504)
Q Consensus 273 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (504)
.++.-+++....... .+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 565555544433322 22222333334566778888888777542 35666777788888888999999888888
Q ss_pred HHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 048258 352 VEWGVPPNTITYNILIRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLR 427 (504)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 427 (504)
.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8753 23 334444444432 33688889999887665 46777888888888888899999998888887654 3
Q ss_pred CCcccHHHHHHHHHhcCCh-hHHHHHHHHHHhc
Q 048258 428 PDNFSYSALIKALIKSGRF-DEAKQTFLSMEQN 459 (504)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 459 (504)
-++.++..++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3466666777777777777 5677777777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-06 Score=82.73 Aligned_cols=180 Identities=8% Similarity=-0.033 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
.|+..+.+.++..-. +...|+.+.-. ...|++.-+.--|-+-.... +....+|..+.-.+.+..+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 455555555543322 44555554433 44455555555444433332 2245566666666777777888888887776
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV----EWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD---- 389 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 389 (504)
... +.+...|..........|+.-++..+|..-- ..|-.++..-|-.........|+.++-+...+++...
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 553 2244444444444445566666666665411 1222334444444444444455544433333322211
Q ss_pred -----CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 390 -----RISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 390 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
+.+.+...|.......-+.+.+..|.++..+.
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22333445555555555555555555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-06 Score=73.85 Aligned_cols=432 Identities=9% Similarity=0.057 Sum_probs=249.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 6 ISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
.+-|..+|+.+++-+..+ ..++++.+++++...- +-.+..|..-+..-...++++....+|.+.... ..+...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence 456888999999988877 9999999999999664 567888999999999999999999999999876 456777887
Q ss_pred HHHHHHhc-CCh----hhHHHHHHHHHHc-CCCCCh-hhHHHHHHH---------HHhcCChHHHHHHHHHHHhcCCCcc
Q 048258 86 LIDGFCNA-KRV----AEVFRVLEIMKER-NVCPNE-ATVRSLVHG---------VFRCLDPHKAFELLIRFMEREPLTQ 149 (504)
Q Consensus 86 l~~~~~~~-g~~----~~a~~~~~~~~~~-~~~~~~-~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (504)
.++-..+. |+. +...+.|+-.... |+.+-. ..|+..+.. +....+.+...++|++++......-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 77643322 332 2334455555443 443322 345554433 2334456667778888776543322
Q ss_pred hhHHHHHH------HH-------HhcCCChHHHHHHHHHHhh--CCCC------CChhh---------HHHHHHHHHccC
Q 048258 150 KLVCNTLL------YR-------LSNNSMASEAAAILRKMGD--RGYL------PESST---------FDYTVTCLVTGL 199 (504)
Q Consensus 150 ~~~~~~l~------~~-------~~~~~~~~~a~~~~~~~~~--~~~~------~~~~~---------~~~l~~~~~~~~ 199 (504)
...|+... .. --+...+..|.++++++.. +|.. |...| |..+|.-= +.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 33333221 11 1123445667777666632 2211 11111 22222111 111
Q ss_pred Chh---------hHHHHHHHHHhc-CCCccHHHHHHH-------HHHHHhcCC-------cHHHHHHHHHHHhCCCCCCH
Q 048258 200 DLN---------ETCGILDTFIKR-GVKPRFSTYLLL-------MEALYKAGR-------DVEGDRYLNHVFKDRLVSNV 255 (504)
Q Consensus 200 ~~~---------~a~~~~~~~~~~-~~~~~~~~~~~l-------~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 255 (504)
-+. ...=.+++.... +..|+. |... .+.+...|+ .+++..+++.....-...+.
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~pei--Wy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEI--WYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 100 111112222211 222322 2111 112223333 34455555555544333333
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 048258 256 NSYNMVIDCFCKVN---MMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKP-DKFTFNSM 331 (504)
Q Consensus 256 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 331 (504)
..|..+...--..- ..+...+.++++......--.-+|...+..-.+..-+..|..+|.++.+.+..+ ++.+.+++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 34443333221111 255566666666554322223466777777777777888888888888776655 66677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccC
Q 048258 332 IDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD--IYTFNALIQSFCRMN 409 (504)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 409 (504)
+.-++ .++..-|.++|+--.+. ...++.--...+..+...++-..+..+|++....+++|+ ..+|..++.--+.-|
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 77554 46778888888876664 334555556677777788888888888888887755554 458888888778888
Q ss_pred CHHHHHHHHHHHHhCC---CCCCcccHHHHHHHHHhcCCh
Q 048258 410 KIEKAEKAFFSMLTLG---LRPDNFSYSALIKALIKSGRF 446 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~ 446 (504)
++..+.++-+++...- ..+....-..+++.|.-.+.+
T Consensus 487 dL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred cHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 8888888877665431 122222334455555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-06 Score=70.71 Aligned_cols=316 Identities=9% Similarity=0.067 Sum_probs=223.5
Q ss_pred CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH---HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHH
Q 048258 78 PNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS---LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCN 154 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (504)
.++.-..-+...+...|++..|+.-|....+- |+..|.+ -...|...|+...|+.-+.++++..|... ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~-~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM-AARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH-HHHH
Confidence 45555666778888889999999999988865 3344444 45578889999999999999988765421 1112
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 048258 155 TLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAG 234 (504)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (504)
.-...+.+.|.+++|..-|+..+... |+..+ ..++.+-+..+. ........+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~------e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQ------EHWVLVQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHH------HHHHHHHHHHHHhcCC
Confidence 22345778999999999999988763 22211 111111111111 1122334455667789
Q ss_pred CcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHH
Q 048258 235 RDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLV 314 (504)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (504)
+...|++....+++..+. +...+..-..+|...|.+..|+.=++...+..- .+..++.-+...+...|+.+.++....
T Consensus 170 D~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred chhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999987755 888999999999999999999988887766532 356677777888889999999999999
Q ss_pred HHHHCCCCccHHHH----HHH---H------HHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHH
Q 048258 315 MLLECGFKPDKFTF----NSM---I------DCLCRAHRFEDALDCLSEMVEWGVPPNT---ITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 315 ~~~~~~~~~~~~~~----~~l---~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 378 (504)
+..+. .||.... -.+ . ......++|-+++...+...+....... ..+..+-.++...|++.+
T Consensus 248 ECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 88876 3554322 111 1 1234567788888888887776432122 234556667778899999
Q ss_pred HHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 379 SLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
|++...++... .|+ +.++..-..+|.-...++.|+.-|+.+.+.+
T Consensus 326 AiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 326 AIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 99999999875 454 7788888888998899999999999998753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-06 Score=73.19 Aligned_cols=427 Identities=10% Similarity=0.057 Sum_probs=234.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
+-|..+|+.||+-+..+ ..+++++.++++... ++.....|..-|+.-....+++...++|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 77999999999987666 999999999999865 45577889999999999999999999999998763 355566655
Q ss_pred HHHHHhc-CChHH----HHHHHHHHHhc-CCCc-chhHHHHHHHH---------HhcCCChHHHHHHHHHHhhCCCCCCh
Q 048258 122 VHGVFRC-LDPHK----AFELLIRFMER-EPLT-QKLVCNTLLYR---------LSNNSMASEAAAILRKMGDRGYLPES 185 (504)
Q Consensus 122 ~~~~~~~-~~~~~----a~~~~~~~~~~-~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (504)
+..-.+. |+... ..+.|+-.+.. +.++ .-..|+..+.. +..+.+.+...++++++....+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 5543332 33322 22333333322 2111 22334444332 22233445556666666543222111
Q ss_pred hhHHH------HHHHH-------HccCChhhHHHHHHHHHhc--CCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 186 STFDY------TVTCL-------VTGLDLNETCGILDTFIKR--GVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 186 ~~~~~------l~~~~-------~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
..|+. -+... -+...+..|.++++++... |......+ .-..|-.++..++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv-------- 237 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQV-------- 237 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHH--------
Confidence 11111 11000 0111222233333332221 11100000 0000111111000
Q ss_pred CCCCHHHHHHHHHHHHhcC------C--HHHHHHHHHHHH-hCCCCCChhhH-----HHHHHHHhcCCc-------hHHH
Q 048258 251 LVSNVNSYNMVIDCFCKVN------M--MDRATEICREMR-DRDIAPNLVTF-----NTLISGHCKDAE-------VHKT 309 (504)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~------~--~~~a~~~~~~~~-~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~a 309 (504)
..|-.+|..--.++ . -....-.+++.. -.+..|+..-. ....+.+...|+ .+++
T Consensus 238 -----~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 238 -----ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred -----HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence 00111111100000 0 001111111111 11122211100 001112333333 4556
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 310 RELLVMLLECGFKPDKFTFNSMIDCLCRA---HRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKM 386 (504)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 386 (504)
..+++.....-..-+..+|..+..---.. ...+.....++++...-...-..+|..++..-.+...++.|..+|.++
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666665432222333443333221111 235666777777765433333446888888888888999999999999
Q ss_pred HhCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-
Q 048258 387 QADRISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPD- 464 (504)
Q Consensus 387 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 464 (504)
.+.+..+ ++.+.++++.-|| .++.+.|.++|+--++. +..++.--...++-+...|+-..|+.+|++....+++||
T Consensus 393 R~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred hhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 9887666 6678888888766 67889999999876664 222334446778888889999999999999998866664
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 465 -SYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 465 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
..+|..++.--..-|+...+.++-+++...
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 468999999888899999999888877653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-08 Score=86.99 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=81.8
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh----cC
Q 048258 228 EALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHC----KD 303 (504)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 303 (504)
..+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ +..+...+..++. ..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCc
Confidence 3444456666665544322 244555556666777777777777777766542 2233333333322 23
Q ss_pred CchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHH
Q 048258 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDV-ARSLRL 382 (504)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~ 382 (504)
+.+.+|..+|+++... ..+++.+.+.+..++...|++++|..++.+....+ +.++.+...++.+....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3566677777665543 34566666666666666777777777766666543 33555555566666666655 455566
Q ss_pred HHHHHh
Q 048258 383 FQKMQA 388 (504)
Q Consensus 383 ~~~~~~ 388 (504)
+.++..
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-08 Score=85.78 Aligned_cols=255 Identities=14% Similarity=0.069 Sum_probs=180.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (504)
...-+.+.|+..+|.-.|+..++.+|. +...|..|.......++-..|+..+++..+.++. +....-.|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 345566788888888888888888766 7788888888888888888888888888877543 66777777778888888
Q ss_pred hHHHHHHHHHHHHCCCCc--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCH
Q 048258 306 VHKTRELLVMLLECGFKP--------DKFTFNSMIDCLCRAHRFEDALDCLSEMV-EWGVPPNTITYNILIRSLCAIGDV 376 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~ 376 (504)
-..|...++.-+...++- +...-.. +.+.....+....++|-++. ..+..+|+.....|...|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 888888888776543210 0000000 11111222334445554444 344447788888888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 048258 377 ARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLS 455 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (504)
++|++.|+.++... +.|..+||-|...++...+.++|+..|+++++. +|+ +...-.|.-.|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999998863 445669999999999999999999999999984 676 44555677788999999999988876
Q ss_pred HHhc---C------CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048258 456 MEQN---G------CNPDSYTSNLILETLVQQGRFEEAHDI 487 (504)
Q Consensus 456 ~~~~---~------~~~~~~~~~~l~~~~~~~g~~~~a~~~ 487 (504)
++.. + ..++..+|..|-.++...++.+-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 6531 1 112345777777777777777644443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-08 Score=87.32 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=125.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChh
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVA 97 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 97 (504)
.-+.+.|+..+|.-.|+..++.+ |-+..+|..|......+++-..|+..+++..+.. +.|......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44567777777777777777665 5577777777777777777777777777777764 335666666666677777777
Q ss_pred hHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CcchhHHHHHHHHHhcCCChHH
Q 048258 98 EVFRVLEIMKERNVCP--------NEATVRSLVHGVFRCLDPHKAFELLIRFMEREP-LTQKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 168 (504)
+|.+.++.-....++- +...-.. ..+.....+....++|-++....+ ..+..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 7777776665432110 0000000 000111112223333433333332 2455555555555666666666
Q ss_pred HHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 169 AAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR-FSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 169 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
|.+.|+..+.. .| |...||.+...++...+.++|+..|.++++. .|. +.+...+.-+|...|.+++|...|-.+
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 66666665543 22 3445566666666666666666666666554 232 344455555566666666666555544
Q ss_pred H
Q 048258 247 F 247 (504)
Q Consensus 247 ~ 247 (504)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 4
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-05 Score=76.02 Aligned_cols=322 Identities=12% Similarity=0.126 Sum_probs=160.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLG--YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (504)
.|+...+..+.++...+-+.+.+++++++.-.. +..+...-|.|+-...+. +..+..+..+++-.-+. ..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-------~~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-------PD 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-------hh
Confidence 456666666777777777777777777765321 122233334444333332 33444444444433211 12
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLD 200 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (504)
+.......+-+++|+++|++.-. +....+.++. .-+..+.|.+.-++.. .+..|..+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 33444555666666666665422 2233333332 2344455554444332 34556666666666666
Q ss_pred hhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 201 LNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICRE 280 (504)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (504)
..+|++-|-+ ..|+..|..+++...+.|.+++-.+++..+.+....|... ..++-+|++.++..+..+++.
T Consensus 1120 v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence 6666655432 2245566666666666666666666665555544333322 345556666666555444331
Q ss_pred HHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 048258 281 MRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360 (504)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (504)
-|+......+.+-|...+.++.|.-+|.. ...|..+...+...|++..|.+.-++. .+.
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 23555555555556666666665555542 233555555555556655555443332 134
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
.+|-.+-.+|...+.+.-| +|...++-....-...++..|...|-+++...+++..
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 4555555555444433222 2222222223333444555555555555555554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.6e-06 Score=76.25 Aligned_cols=393 Identities=14% Similarity=0.059 Sum_probs=180.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCc-HHhHHHHHHH
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG---------YAPN-VYTYTILIDG 89 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~-~~~~~~l~~~ 89 (504)
|...|+.+.|.+-.+.++ +..+|..+.+.|.+..+.+-|.-.+-.|.... -.++ ...-.++ .
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv--L 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV--L 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH--H
Confidence 445566666666655554 34556666666666655555544444332210 0111 1111111 1
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
....|..++|+.+|.+-++. ..|=..|-..|.+++|+++-+.--.. .-..+|......+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHH
Confidence 23456666666666665543 12233444556666666554432111 1123344444444445556666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 170 AAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
+++|++.... -...+..+. .+......+.+. ..|...|.-....+-..|+.+.|+.+|..+..
T Consensus 878 leyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 878 LEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 6666554221 111111110 001111111111 12334444455555556666666666654432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHH
Q 048258 250 RLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFN 329 (504)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (504)
|..+.+..+-.|+.++|-.+-++- | |......+.+.|-..|++.+|...|.+... |.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 344555555566666666655442 1 445566667777777777777776665432 11
Q ss_pred HHHHHH-------------H--hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH--------H
Q 048258 330 SMIDCL-------------C--RAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQK--------M 386 (504)
Q Consensus 330 ~l~~~~-------------~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~ 386 (504)
..|+.| . ...+.-.|-++|++.- . .....+..|-+.|.+.+|+++--+ +
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 112211 1 1112222333333321 0 112233345566666655543221 1
Q ss_pred HhCCC--CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCC
Q 048258 387 QADRI--SPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME-QNGCNP 463 (504)
Q Consensus 387 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~ 463 (504)
+..++ ..|+...+--...++...++++|..++-...+ |...+..|.. .+..-..++-+.|. .+.-.|
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN-RNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc-CCCchhHHHHHhcCcCcCCCc
Confidence 11112 23455566666666777777777777655544 2222333322 23333334444443 111122
Q ss_pred Ch----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 464 DS----YTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 464 ~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
+. .++..++..|.++|.|..|-+-|.+
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 22 3455667777777777766555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.5e-07 Score=88.20 Aligned_cols=243 Identities=9% Similarity=0.070 Sum_probs=183.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC---hhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR-DIAPN---LVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
-|++.....|. +...|-..|......++.++|.++.++.... +++-. ...|.++++.-..-|.-+...++|+++.
T Consensus 1446 DferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34445555444 6677888889999999999999999888754 22111 2356666666666778888899999988
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD--- 394 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 394 (504)
+. .-....|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+..+-+.|..++.++.+. -|.
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eH 1599 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEH 1599 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhh
Confidence 75 223567888999999999999999999999986 3457778999999999999999999999999875 333
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh--hHHHHH
Q 048258 395 IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSY--TSNLIL 472 (504)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~ 472 (504)
.....-.+..-.+.|+.+.+..+|+..+... +.....|+.+++.-.++|+.+.++.+|++....++.|... .|..++
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 3345555666678999999999999988763 3456789999999999999999999999999988777432 455556
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 048258 473 ETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~ 491 (504)
..--..|+-+.++.+=.++
T Consensus 1679 eyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHhcCchhhHHHHHHHH
Confidence 5555567665544443333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-06 Score=76.61 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=64.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHR 340 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (504)
.+.+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34445556677777777777766532 23345666677777777777777765431 23445666777777
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048258 341 FEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQ 384 (504)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 384 (504)
|+.|.++-.+... .......|..-..-+-+.|++.+|.+++-
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 7777766655432 22233344444444455566555555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-05 Score=71.57 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 048258 364 NILIRSLCAIGDVA---RSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKAL 440 (504)
Q Consensus 364 ~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (504)
+.++..+.+.++.. +|+-+++...... +.|..+--.+++.|+-.|-+..|.++|..+.-..+..|..-|- +...+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 45566666666644 3444444444431 3334444566777777777777777777766554544433221 22334
Q ss_pred HhcCChhHHHHHHHHHH
Q 048258 441 IKSGRFDEAKQTFLSME 457 (504)
Q Consensus 441 ~~~g~~~~a~~~~~~~~ 457 (504)
...|++..+...+....
T Consensus 518 ~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHL 534 (932)
T ss_pred HhcccchhHHHHHHHHH
Confidence 44556665555555444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-06 Score=73.20 Aligned_cols=213 Identities=6% Similarity=-0.064 Sum_probs=138.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG-VVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
+..+-..+...+..++|+...+++++.+ +-+..+|+....++...| ++++++..++++.+.. +.+..+|+.-...+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4445555666778899999999988775 556667776666666667 5789999999888775 446667776665666
Q ss_pred hcCCh--hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC---CC-
Q 048258 92 NAKRV--AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN---SM- 165 (504)
Q Consensus 92 ~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~- 165 (504)
+.|+. ++++..++.+.+.+. -+..+|.....++...|+++++++.++++++.++. +..+|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 66653 677888888887753 46778888888888888899999999998887765 556666555444433 22
Q ss_pred ---hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHcc----CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 048258 166 ---ASEAAAILRKMGDRGYLPESSTFDYTVTCLVTG----LDLNETCGILDTFIKRGVKPRFSTYLLLMEALY 231 (504)
Q Consensus 166 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (504)
.++.++...++...... +...|+.+...+... +...++.+.+....+.+ +.+...+..++..++
T Consensus 196 ~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 23455555555544322 555666555555542 23344555555554432 234444555555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-06 Score=78.54 Aligned_cols=221 Identities=17% Similarity=0.199 Sum_probs=178.8
Q ss_pred CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 048258 216 VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNT 295 (504)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (504)
.+|--..-..+...+.+.|-..+|..++++.. .|...+.+|...|+..+|..+..+..++ +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444556677788889999999999888654 4677888999999999999999888874 678889999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 048258 296 LISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGD 375 (504)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (504)
+.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 988888888888898888765432 11122222345789999999999887763 4467789889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 376 VARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
++.|.+.|...... .|+ ...||.+-.+|.+.++-.+|...+.++.+.+ .-+...|...+-...+.|.+++|++.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999998875 454 5699999999999999999999999999887 5567778888888899999999999999
Q ss_pred HHHh
Q 048258 455 SMEQ 458 (504)
Q Consensus 455 ~~~~ 458 (504)
++..
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 8874
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-05 Score=70.84 Aligned_cols=292 Identities=12% Similarity=0.021 Sum_probs=133.3
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcH
Q 048258 158 YRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
.+.....++.+|+.+++.+.++.. ...-|..+...|+..|+++.|.++|.+. ..+...+..|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344455556666666665554422 2233445555666666666666665432 22344455666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
+|.++-.... ++......|-.-..-+-..|++.+|.++|-.+.. |+ ..+..|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 6655544432 2333344444444455555666655555533221 11 23445555555555555554432
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD-------- 389 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------- 389 (504)
.. .-..|...+..-+...|+...|..-|-+..+ |...+..|-..+-|++|.++-+.--..
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF 945 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence 11 1122333444445555666666555544322 233344444444444444332211000
Q ss_pred ------CCCC------CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 390 ------RISP------DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 390 ------~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
|-.. .......-+...+..+.++-|.++-+-..+.. .| .....+...+-..|++++|-+.+-+.+
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~--~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MG--EVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cc--cchhHHhhhhhhccchhhhhHhhHHHh
Confidence 0000 00011122233344444555555444333321 11 222334444556777888877777776
Q ss_pred hcCCCCChhhHHH-----HHHHHHhcC-CHHHHHHHH
Q 048258 458 QNGCNPDSYTSNL-----ILETLVQQG-RFEEAHDIV 488 (504)
Q Consensus 458 ~~~~~~~~~~~~~-----l~~~~~~~g-~~~~a~~~~ 488 (504)
+.+ .-..+|.. .-.-+.+.| +.++|..+|
T Consensus 1023 kln--tynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1023 KLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred hcc--cccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 542 11222321 222344555 567776665
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-06 Score=72.20 Aligned_cols=211 Identities=11% Similarity=0.006 Sum_probs=120.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 048258 50 ILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK-RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC 128 (504)
Q Consensus 50 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (504)
.+-..+...++.++|+.+.+++.+.. +-+..+|+.-..++...| .+++++..++++.+.+. -+..+|......+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 33344455677888888888888764 334556666666666666 56888888888887643 2445566555555556
Q ss_pred CCh--HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHcc---CCh--
Q 048258 129 LDP--HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTG---LDL-- 201 (504)
Q Consensus 129 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~-- 201 (504)
|+. ++++..++++++..+. +..+|+....++...|.++++++.+.++.+.+.. +...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 653 5667777777776664 6667777777777777788888888887776544 455555554444332 111
Q ss_pred --hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc----CCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 202 --NETCGILDTFIKRGVKPRFSTYLLLMEALYKA----GRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 202 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
++.++...+++... +-+...+..+...+... +...+|.+.+..+.+..+. +......++..|+
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 23444444444432 23344444444444331 2223344444444433222 3444444444444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-07 Score=76.30 Aligned_cols=184 Identities=11% Similarity=-0.012 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc-HHhHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDR---FTYNILIHGICRIGVVDEALRLVKQMEGLGYA-PN-VYTYT 84 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~~ 84 (504)
+..+......+...|+++.|...|+++.+.. +.++ .++..+..++...|++++|+..++++.+.... +. ..++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3345555566666666666666666665543 2222 34455556666666666666666666554211 01 01233
Q ss_pred HHHHHHHhc--------CChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHH
Q 048258 85 ILIDGFCNA--------KRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNT 155 (504)
Q Consensus 85 ~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (504)
.+..++... |++++|.+.|+.+.... |+. .....+..... .... . ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 333333332 45566666666665542 222 11111110000 0000 0 001123
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhCCC-CC-ChhhHHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 156 LLYRLSNNSMASEAAAILRKMGDRGY-LP-ESSTFDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
+...+.+.|++.+|...+........ .| ....+..+..++...|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667888888888888888776532 12 3457778888888888888888888877664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.1e-05 Score=70.09 Aligned_cols=455 Identities=14% Similarity=0.148 Sum_probs=248.3
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHG--ICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
-....+++..|.+...++.+. .|+.. |..++.+ +.+.|+.++|..+++.....+. .|..|...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 345678899999999998876 35543 3334444 4688999999999988877653 3888888888899999999
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh---------H
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA---------S 167 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~ 167 (504)
++|..+|++..+. .|+......+..+|.+.+++.+-.+.--++-+.-|...-..|+.+--.+...... .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999999877 5677888888889999888876655555555544443434444332222221111 2
Q ss_pred HHHHHHHHHhhCC-CCCChhhHHHHHHHHHccCChhhHHHHHHH-HHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 048258 168 EAAAILRKMGDRG-YLPESSTFDYTVTCLVTGLDLNETCGILDT-FIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNH 245 (504)
Q Consensus 168 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (504)
-|.+.++.+.+.+ ..-+..-.......+...|++++|++++.. ..+.-.+-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3455555655543 222233333344455667889999988843 33332333444445666777788888888888888
Q ss_pred HHhCCCCCCHHHH----HHHHH-H--------HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH---hcCCchHHH
Q 048258 246 VFKDRLVSNVNSY----NMVID-C--------FCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH---CKDAEVHKT 309 (504)
Q Consensus 246 ~~~~~~~~~~~~~----~~l~~-~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a 309 (504)
++..+.. |-..| ..++. . +...+..+...+...+..... ....|-+-+.+. ..-|+.+++
T Consensus 252 Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~ 327 (932)
T KOG2053|consen 252 LLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEM 327 (932)
T ss_pred HHHhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHH
Confidence 8877644 21111 11111 1 111122333333333322221 112222223322 234666665
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHhcCC-----HH
Q 048258 310 RELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI-------TYNILIRSLCAIGD-----VA 377 (504)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~ 377 (504)
...|-+ +.|-.| .+..=+..|...=..++-..++....... ++.. .+...+..-...|. .+
T Consensus 328 ~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 328 LSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred HHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 444322 222122 12222222332223333334443333221 1111 12222222223332 22
Q ss_pred HHHHHHHHHH---hC------CCCCCHH---------hHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCcccHHHH
Q 048258 378 RSLRLFQKMQ---AD------RISPDIY---------TFNALIQSFCRMNKIE---KAEKAFFSMLTLGLRPDNFSYSAL 436 (504)
Q Consensus 378 ~a~~~~~~~~---~~------~~~~~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l 436 (504)
.-..++++.. +. ++-|+.. +.+.|++.|.+.++.. +|+.+++.-.... +.|..+--.+
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlL 479 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLL 479 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHH
Confidence 2333332221 11 1223322 2366778888888765 4445555554432 2334444578
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 437 IKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 492 (504)
+..|.-.|-+..|.++|+.+--+.+.-|..-+. +..-+...|++..+...++...
T Consensus 480 iriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 480 IRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred HHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHH
Confidence 889999999999999999987665554443322 3344455667777666665544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.7e-06 Score=81.46 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=173.8
Q ss_pred CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 048258 217 KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR-LVS---NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVT 292 (504)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (504)
|.+...|...|......++.+.|.++.++++..- +.- -...|.++++.-...|.-+...++|++..+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 5566778888889999999999999999988642 111 23467777777777888899999999988763 13456
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHH
Q 048258 293 FNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVP-PNTITYNILIRSLC 371 (504)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 371 (504)
|..|...|.+.+..++|.++++.|.+. +......|..++..+.++++-+.|..++.++.+.-.+ -......-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888899999999999999999999875 2357788999999999999999999999999876211 13334555666677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCCh
Q 048258 372 AIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN--FSYSALIKALIKSGRF 446 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 446 (504)
+.|+.+.+..+|+...... +.....|+..++.-.++|+.+.++.+|++++..++.|-. ..|...+.-=-..|+-
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 8999999999999998763 446779999999999999999999999999998776542 2344444333334443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-06 Score=73.44 Aligned_cols=186 Identities=10% Similarity=0.051 Sum_probs=115.9
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC-c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hH
Q 048258 289 NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFK-P-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI---TY 363 (504)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 363 (504)
....+..+...+...|+++.|...++.+...... | ....+..+..++...|++++|+..++++.+.... +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 4455666667777788888888888877665321 1 1235566667777788888888888887765321 222 34
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHH
Q 048258 364 NILIRSLCAI--------GDVARSLRLFQKMQADRISPDI-YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYS 434 (504)
Q Consensus 364 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 434 (504)
..+..++... |++++|.+.++++... .|+. ..+..+..... .... .. ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence 4445555443 5677777777777664 2332 22222111100 0000 00 0112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 435 ALIKALIKSGRFDEAKQTFLSMEQNGC--NPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
.+...+.+.|++++|...++++.+... +.....+..++.++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456678899999999999999987521 1234678889999999999999999988887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-06 Score=68.43 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
..+-..+...|+-+....+....... .+.|......++....+.|++..|...+++.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 44445555556655555555553322 1335555555666666677777777777766664 255666777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 048258 374 GDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
|+.+.|..-|.+..+.. .-+....+.+...+.-.|+++.|..++......+ .-|...-..+.-+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777766666642 2344456666666666677777777766666543 224555556666666667777776665
Q ss_pred HHHH
Q 048258 454 LSME 457 (504)
Q Consensus 454 ~~~~ 457 (504)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 4443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-05 Score=63.74 Aligned_cols=250 Identities=13% Similarity=0.067 Sum_probs=118.5
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 048258 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNV 80 (504)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 80 (504)
|...+..|+...|+ ++-+.=.|++..++..-+..... +.++..-..+-++|...|++..... +++... .|..
T Consensus 1 m~~~~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~l 72 (299)
T KOG3081|consen 1 MSSMEAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPL 72 (299)
T ss_pred CCccccCcchhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChH
Confidence 44555556555554 35566667777777766655443 2344444555666777776644332 222221 2222
Q ss_pred HhHHHHHHHHHhcCChhhH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 048258 81 YTYTILIDGFCNAKRVAEV-FRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYR 159 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (504)
.....+......-++.++. .++.+.+.......+......-...|.+.|++++|++...... +..+...-...
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI 146 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHH
Confidence 2222222222222332222 2344444443332232223333445666677777766655421 11222222233
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 048258 160 LSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGR 235 (504)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (504)
+.+..+.+-|.+.+++|.+. .+..|.+.+..++.+ .++..+|.-+|+++.+. .+|+..+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 45555666666666666553 144455545444433 23455555555555543 24455555555555555555
Q ss_pred cHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 236 DVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
+++|..+++.++..... ++.+...++.+-...|
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 55555555555544433 3444444443333333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-06 Score=77.25 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLC 336 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (504)
.-..+...+...|-...|+.+|+++. .|..++.+|+..|+..+|..+..+..+. +|++..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456677888888888888888764 4566778888889999999888887774 678888888888877
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 048258 337 RAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEK 416 (504)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 416 (504)
...-+++|.++.+..... .-..+.......++++++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888766442 11222222334789999999999887763 4456688888888889999999999
Q ss_pred HHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 417 AFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 417 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.|...+.. .|+ ...|+.+-.+|.+.|+-.+|...+.++.+.+ ..+..+|..........|.+++|.+.+.++...
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999885 555 6789999999999999999999999999876 556777888888888999999999999998754
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-06 Score=80.09 Aligned_cols=234 Identities=13% Similarity=0.010 Sum_probs=115.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...|..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID-------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------
Confidence 345567777777777777777777777665542 22233333333345555555544443 2221
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
......++.-+..++..+... .-+...+..+..+|-+.|+.++|.++++++++..+. +..+.|.+...|... +.+
T Consensus 92 -~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 -SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 111122222222222222222 113345556666666666666666666666666543 555666666666666 666
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHH-----HHccCChhhHHHHHHHHHhc-CCCccHHHHHHHHHHHHhcCCcHHHHH
Q 048258 168 EAAAILRKMGDRGYLPESSTFDYTVTC-----LVTGLDLNETCGILDTFIKR-GVKPRFSTYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (504)
+|.+++.+....-+ +..-|+.+... .....+.+.-.++.+.+... +..--..++..+-..|....+++++..
T Consensus 167 KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 167 KAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 66666655543210 00011111100 00112222333333333332 222223444555566667777888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
+++.+++..+. |.....-++.+|.
T Consensus 245 iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCc-chhhHHHHHHHHH
Confidence 88888877655 5566666666665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-08 Score=54.51 Aligned_cols=32 Identities=34% Similarity=0.622 Sum_probs=20.2
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQM 36 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 36 (504)
|++||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666655
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-08 Score=54.68 Aligned_cols=32 Identities=50% Similarity=0.972 Sum_probs=15.7
Q ss_pred CCCCcHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048258 75 GYAPNVYTYTILIDGFCNAKRVAEVFRVLEIM 106 (504)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 106 (504)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555544444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-06 Score=67.96 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=112.6
Q ss_pred HHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 048258 297 ISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDV 376 (504)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (504)
+..|...|+++.+......+.. |. ..+...++.++++..++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3467888888876544432221 10 01223667788888888877764 55788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HccCC--HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 048258 377 ARSLRLFQKMQADRISPDIYTFNALIQSF-CRMNK--IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
++|...+++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988864 44666777777764 56676 589999999999864 335677788888889999999999999
Q ss_pred HHHHhcCCCCChhh
Q 048258 454 LSMEQNGCNPDSYT 467 (504)
Q Consensus 454 ~~~~~~~~~~~~~~ 467 (504)
+++.+.. +|+..-
T Consensus 168 ~~aL~l~-~~~~~r 180 (198)
T PRK10370 168 QKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHhhC-CCCccH
Confidence 9998763 454443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-05 Score=63.97 Aligned_cols=248 Identities=12% Similarity=0.100 Sum_probs=139.1
Q ss_pred HHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048258 194 CLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDR 273 (504)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (504)
-+.-.|++..++.......... .+...-..+.++|...|.+.....- +... ..+.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHH
Confidence 3344455555555444433321 3344444455666666655433221 1111 12233333333333333444443
Q ss_pred HH-HHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 274 AT-EICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV 352 (504)
Q Consensus 274 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (504)
-+ ++.+.+.......+......-...|+..+++++|.+...... +......=+..+.+..+++-|...+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 334444444333333333344456777888888877776521 23333333445667777888888888887
Q ss_pred HCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 048258 353 EWGVPPNTITYNILIRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRP 428 (504)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 428 (504)
+.. +..+.+.|..++.+ .+.+..|.-+|+++.+. .+|+..+.+....++...|++++|..+++.+.... ..
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 642 55566666666654 34577788888888764 47777788888888888888888888888887764 33
Q ss_pred CcccHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 048258 429 DNFSYSALIKALIKSGRFDE-AKQTFLSMEQ 458 (504)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 458 (504)
++.+...++.+-...|...+ ..+.+.++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 45666555555555565433 3445555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-06 Score=68.91 Aligned_cols=166 Identities=13% Similarity=-0.042 Sum_probs=130.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
|... ..+-..+...|+-+....+........ +.|......++....+.|++..|...+.+..... ++|...++.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 556667777888888888777765432 4466667778888889999999999999988764 568889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhh
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNE 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (504)
+|.+.|+++.|..-|.+..+..+. +....+.+...+.-.|+.+.|..++......+.. +...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 999999999999999998887665 5567777888888899999999999888765433 67777888888889999999
Q ss_pred HHHHHHHHHhc
Q 048258 204 TCGILDTFIKR 214 (504)
Q Consensus 204 a~~~~~~~~~~ 214 (504)
|..+...-...
T Consensus 221 A~~i~~~e~~~ 231 (257)
T COG5010 221 AEDIAVQELLS 231 (257)
T ss_pred HHhhccccccc
Confidence 99887765543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.7e-06 Score=78.83 Aligned_cols=221 Identities=11% Similarity=0.010 Sum_probs=150.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN-VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (504)
+.+...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++.+++.-+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------ 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------ 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence 456778999999999999999999999987766 344 33444444466677776666555 2222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLD 200 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (504)
......++.-..-++..+... + .+..++..+..+|.+.|+.+++.++++++++.. .-|....+.+...+... +
T Consensus 92 ---~~~~~~~~~~ve~~~~~i~~~-~-~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 ---SFSQNLKWAIVEHICDKILLY-G-ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ---hcccccchhHHHHHHHHHHhh-h-hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 222222332222222223222 1 244577788999999999999999999999886 33788999999999999 9
Q ss_pred hhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC-------------------CCCCHHHHHHH
Q 048258 201 LNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR-------------------LVSNVNSYNMV 261 (504)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l 261 (504)
+++|.+++.+.... +....++..+.+++..+.... ...-..++..+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 99999999988765 333334444444444444332 22234455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 048258 262 IDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHC 301 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (504)
-..|...+++++++.+++.+.+.... |.....-++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 67788888999999999999988644 6666777777665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-06 Score=65.15 Aligned_cols=94 Identities=14% Similarity=0.020 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+++.... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555555666666666666655542 3344555555555666666666666666666542 2344555555555666
Q ss_pred cCChhHHHHHHHHHHh
Q 048258 443 SGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~ 458 (504)
.|++++|+..|+....
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-06 Score=70.34 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=120.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
-+..|...|+++.+....+.+.. |. ..+...++.++++..++...+.+ +.|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34678889999887655533321 11 01223677788888888888765 6688899999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGV-FRCLD--PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
+++|...|++..+... .+...+..+..++ ...|+ .++|.+++++..+..|. +..++..+...+...|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998753 3667777777764 67777 59999999999999887 677888888899999999999999
Q ss_pred HHHHhhCCCCCChhhH
Q 048258 173 LRKMGDRGYLPESSTF 188 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~ 188 (504)
++++.+.. .|+..-.
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99998764 3344333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-05 Score=76.15 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=157.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHH-HHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 048258 114 NEATVRSLVHGVFRCLDPHKAFE-LLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTV 192 (504)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (504)
++.....+=.+...-|..++|-+ ++.+.. .++....+.....+++.-....... ...+...+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 33344444445555666666643 333221 1333333333333333333333322 334678888888
Q ss_pred HHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048258 193 TCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD 272 (504)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (504)
......|.+++|..+++.+.+.. +.+......++..+.+.+++++|...+++.+...+. +......+..++.+.|+++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchH
Confidence 99999999999999999998863 445667888888999999999999999999988766 7788888888999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 273 RATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV 352 (504)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (504)
+|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.. .+....|+.++. +...-...++++.
T Consensus 172 ~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 9999999998743 2357888888888999999999999999887653 234455554432 3344455566554
Q ss_pred HCC----CCCChhhHHHHHHHHHhc
Q 048258 353 EWG----VPPNTITYNILIRSLCAI 373 (504)
Q Consensus 353 ~~~----~~~~~~~~~~l~~~~~~~ 373 (504)
-.+ .+....+....+..+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 244 VEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cccccCCCceeeeeHHHHHHHHhhc
Confidence 332 233334455555555543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-06 Score=66.42 Aligned_cols=111 Identities=10% Similarity=-0.100 Sum_probs=73.4
Q ss_pred HHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 048258 31 LKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 110 (504)
.+|++..+. .|+ .+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 232 24445666677777777777777777664 4466677777777777777777777777777654
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 111 VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+.+...+..+..++...|++++|...|+......|.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 235566777777777777777777777777766554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-05 Score=74.50 Aligned_cols=235 Identities=13% Similarity=0.158 Sum_probs=164.5
Q ss_pred cHHhHHHHHHHHHhcCChhhHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHH
Q 048258 79 NVYTYTILIDGFCNAKRVAEVF-RVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLL 157 (504)
Q Consensus 79 ~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (504)
++.....+=.+.+..|+.++|- +++.+.. .++....+.....+++.-...+....+. +...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRRYPH-TELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHhccc-cHHHHHHHH
Confidence 4444444445556667766663 3444433 2233333333444444444444444444 578888899
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCc
Q 048258 158 YRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRD 236 (504)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (504)
....+.|..++|+.+++...+. .| +......+...+.+.+++++|+..+++..... +.+......+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999999886 44 45567888899999999999999999999875 55778889999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHH
Q 048258 237 VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVML 316 (504)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (504)
++|..+|+++...++. +..++..+..++...|+.++|...|+...+.. .+....|+..+ ++...-...++++
T Consensus 171 ~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 171 EQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHc
Confidence 9999999999985543 68889999999999999999999999988763 23445555444 3344455556655
Q ss_pred HHC----CCCccHHHHHHHHHHHHh
Q 048258 317 LEC----GFKPDKFTFNSMIDCLCR 337 (504)
Q Consensus 317 ~~~----~~~~~~~~~~~l~~~~~~ 337 (504)
.-. |.+....+...++..+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 243 GVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred CcccccCCCceeeeeHHHHHHHHhh
Confidence 432 233333445555555543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-05 Score=60.97 Aligned_cols=189 Identities=12% Similarity=0.146 Sum_probs=132.6
Q ss_pred hcCCHHHHHHHHHHHHhC---C-CCCChh-hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 048258 267 KVNMMDRATEICREMRDR---D-IAPNLV-TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRF 341 (504)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (504)
...+.++..+++.++... | ..++.. .+..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345788888888887653 3 333433 34455556677888888998888887653 33333333223335567889
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 342 EDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
++|+++++.+.+.+ +.|..++-.=+...-..|+..+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999988875 556677766666666778877888888887776 5678889999999999999999999999988
Q ss_pred HhCCCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHhc
Q 048258 422 LTLGLRPDNFSYSALIKALIKSG---RFDEAKQTFLSMEQN 459 (504)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 459 (504)
+-.. +.++..+..+...+.-.| +..-+.+.|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8752 234445566666655444 466788888888874
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00021 Score=57.43 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 048258 223 YLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK 302 (504)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (504)
+..++-+....|+.+.|..+++++...-+. +..+-..-.-.+-..|++++|+++++.+.+.+ +.|..++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 445555666667777777777766654322 33333333333445677777777777777665 2355566655555556
Q ss_pred CCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHH
Q 048258 303 DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG---DVARS 379 (504)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a 379 (504)
.|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. |.++..+..+...+.-.| +.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66666666666665554 34577777777777777777777777777776542 334444444554443333 45566
Q ss_pred HHHHHHHHhC
Q 048258 380 LRLFQKMQAD 389 (504)
Q Consensus 380 ~~~~~~~~~~ 389 (504)
.++|.+..+.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 6677666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00029 Score=62.32 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=47.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHccCChhhH
Q 048258 126 FRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE-SSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 204 (504)
...|++++|+..++.+....|. +...+......+.+.++..+|.+.++++... .|+ ......+..++.+.|+..+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445555555555554444332 3344444444444455555555555544443 222 22223334444444444444
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcH
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
+.+++...... +.|+..|..+.++|...|+..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchH
Confidence 44444444332 334444444444444444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.48 E-value=9e-06 Score=61.78 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
...+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..+..++..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2244445555555555555555555555555432 2233444444555555
Q ss_pred cCChhHHHHHHHHHHh
Q 048258 443 SGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~ 458 (504)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.8e-06 Score=62.13 Aligned_cols=101 Identities=15% Similarity=0.064 Sum_probs=59.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
+......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...++...+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33444555555666666666666666665543 3355556666666666666666666666665543 234455555566
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC
Q 048258 124 GVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
++...|++++|.+.++...+..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhcc
Confidence 66666666666666666666544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-05 Score=60.68 Aligned_cols=125 Identities=15% Similarity=0.082 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD---RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--VYTYTIL 86 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 86 (504)
.|..++..+ ..++...+...++.+.+.+ +.+ ....-.+...+...|++++|...|+++......|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 2566666666666665543 222 12223344555566666666666666665431121 1123334
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIR 140 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (504)
...+...|++++|+..++..... ...+..+.....++.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555566666666666543222 12333444455555555666666555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00029 Score=62.26 Aligned_cols=202 Identities=14% Similarity=0.032 Sum_probs=132.2
Q ss_pred CCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHH
Q 048258 24 NSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFR 101 (504)
Q Consensus 24 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (504)
.+..++...-++++..+ -+|+...+...+.+......-..+-.++.+..+. .-...-|..-+. +...|++++|++
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHH
Confidence 44566666666666442 1456666666666554433333333333333331 112333544443 446788888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC
Q 048258 102 VLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGY 181 (504)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (504)
.++.+... .+-|++.+......+...++.++|.+.++++....|.. ....-.+..++.+.|++.+|..+++......
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~- 404 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFND- 404 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Confidence 88887765 23455666667778888888888888888888887764 5666677888888888888888888877653
Q ss_pred CCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 182 LPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
+-++..|..+..+|...|+..++.....+ .+...|+++.|...+....+.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 33777888888888888887776655433 445567777777777666654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.7e-05 Score=59.71 Aligned_cols=125 Identities=18% Similarity=0.311 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--cccHHHHH
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPD---IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD--NFSYSALI 437 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 437 (504)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344433 3566666666666666542 222 12233344556667777777777777776541221 12233455
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 438 KALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
..+...|++++|+..++..... ......+...+.++.+.|++++|+..|+.+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666777777777777553322 223445566677777777777777777654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.3e-05 Score=67.91 Aligned_cols=129 Identities=14% Similarity=0.086 Sum_probs=102.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
......++..+...++++.|+.+|+++.+.. |+ ....+++.+...++..+|.+++.+..+.. +.+...+......
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344566677777889999999999998763 54 34457777777888889999988888763 3466677777788
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhC
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (504)
+.+.++++.|+++.++.....|. +-.+|..|..+|...|+++.|+..++.+.-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 88999999999999999888765 6678888999999999999999998887643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-05 Score=67.86 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 048258 330 SMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMN 409 (504)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (504)
.++..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+..+.. +.+...+..-...+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555555542 22 23334444444555555555555555431 223334444444455555
Q ss_pred CHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 410 KIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
+++.|+.+.+++.+. .|+ ..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555555553 232 3345555555555555555555554443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.4e-06 Score=45.47 Aligned_cols=33 Identities=52% Similarity=0.898 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPN 79 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 79 (504)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555544
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.4e-05 Score=53.03 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+..+...+...|+++.|+..++.+.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445556666666666666666665543 3334555556666666666666666666665543 2333455555556666
Q ss_pred cCChhhHHHHHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKE 108 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~ 108 (504)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0092 Score=55.59 Aligned_cols=206 Identities=11% Similarity=0.011 Sum_probs=128.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC--------cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGL-GYAP--------NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC 112 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 112 (504)
.|.+..|..+...-...-.++.|...|-+...- |++. +...-.+=+ -+--|++++|.++|-.+-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhh--
Confidence 688999998888777777777887777665432 2111 000111111 123588999999998887663
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 048258 113 PNEATVRSLVHGVFRCLDPHKAFELLIRFMER-EPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYT 191 (504)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (504)
..+..+.+.||+-...++++.--.. ....-...|+.+...+.....+++|.++|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2355666778877666665431111 0111235778888888888888888888876542 1234
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMM 271 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (504)
+.++.+..++++-..+... ++.+....-.+..++.+.|.-++|.+.|-+... + ...+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHHHHH
Confidence 5666666666655444433 345566777788888888888888876644321 1 2344567777888
Q ss_pred HHHHHHHHHH
Q 048258 272 DRATEICREM 281 (504)
Q Consensus 272 ~~a~~~~~~~ 281 (504)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 8888776554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=8e-06 Score=44.77 Aligned_cols=33 Identities=42% Similarity=0.734 Sum_probs=16.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQNGCNPD 464 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 464 (504)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.4e-06 Score=44.50 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=8.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 49 NILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
+.++.+|++.|+++.|.++|+.|.
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333333333333333333333333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=1e-05 Score=55.25 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHhhhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHH
Q 048258 23 SNSIDLAYLKFQQMSVDQCK-PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFR 101 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (504)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ +.+......+.+++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566666666666554311 1333344455666666666666666655 2221 1122333344555556666666666
Q ss_pred HHHH
Q 048258 102 VLEI 105 (504)
Q Consensus 102 ~~~~ 105 (504)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=65.51 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHH
Q 048258 250 RLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRD--IAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFT 327 (504)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (504)
+...+......+++.+....+.+.+..++....... ...-..|..++++.|.+.|..+.+..++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 334466666677777777777888888887776652 222345566888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 328 FNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
++.++..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877766666666666656555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0003 Score=52.85 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=69.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGV 125 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (504)
...-.+..-+...|++++|..+|+.+...+ +-+..-|..|.-++-..|++++|+..|......++ .|+..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 333444555667788888888888777664 33566667777777777888888888887777653 4666777777778
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 048258 126 FRCLDPHKAFELLIRFMERE 145 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~ 145 (504)
...|+.+.|.+.|+..+...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 88888888888887776653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00023 Score=52.60 Aligned_cols=98 Identities=11% Similarity=-0.075 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHHhHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQC--KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYA--PNVYTYTILI 87 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 87 (504)
++......+.+.|+++.|...|+.+.+... +.....+..+..++.+.|+++.|...|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444555666666666666666666654421 011234445556666666666666666666543211 1133455555
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 048258 88 DGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.++...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5556666666666666666555
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00013 Score=65.31 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=103.7
Q ss_pred cCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 048258 214 RGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR--LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLV 291 (504)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 291 (504)
.+.+.+......++..+....+.+.+..++.+..... ...-..+..++++.|...|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4456677778888888888888899999888887652 22234455699999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRA 338 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (504)
+++.+|+.+.+.|++..|.++...|...+...++.++...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988777666777777666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=9e-06 Score=44.16 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKP 43 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (504)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999877
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=62.88 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA-IGDVARSLRLFQKMQADRISPDIYTFNALIQSF 405 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (504)
+|..+++...+.+..+.|..+|.++.+.+ ..+...|......... .++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666677777777666432 2233344444433223 44555577777666654 344555666666666
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 406 CRMNKIEKAEKAFFSMLTLGLRPDN---FSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 406 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
...|+.+.|..+|++.+.. +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666777777777666654 22221 25666666666666666666666666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=62.17 Aligned_cols=133 Identities=9% Similarity=0.021 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR-IGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|......-.. .++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888888888888887553 3344445444444233 56677788888888765 45677788888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNE---ATVRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
+...|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.-+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 88888888888888888765 22222 3677777777778888888888777776543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00022 Score=63.78 Aligned_cols=94 Identities=12% Similarity=-0.018 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
.-...+...|+++.|+..|+++.+.+ +.+...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 34567778899999999999988776 5677888888888899999999999999988875 446778888888888899
Q ss_pred ChhhHHHHHHHHHHcC
Q 048258 95 RVAEVFRVLEIMKERN 110 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~ 110 (504)
++++|+..|++..+.+
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999888763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=50.90 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++....... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 4456666777888888888888877653 33445666777777777888888888887776532 244566667777777
Q ss_pred cCChHHHHHHHHHHHhc
Q 048258 128 CLDPHKAFELLIRFMER 144 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~ 144 (504)
.|+++.|...+......
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 77777777777766554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0027 Score=53.28 Aligned_cols=178 Identities=9% Similarity=0.008 Sum_probs=89.7
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRGVKPR--FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK 267 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (504)
.....+...|++++|.+.|+.+......+. ......++.++.+.+++++|...+++..+..|......+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344445566777777777777766532111 122355667777778888888888777776554333333333333221
Q ss_pred --cC---------------C---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHH
Q 048258 268 --VN---------------M---MDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFT 327 (504)
Q Consensus 268 --~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (504)
.+ + ..+|+..|+.+.+. |-.+.-..+|...+..+... .- ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~---la-~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR---LA-KY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH---HH-HH
Confidence 00 1 12233333333332 22222233343333332211 00 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 328 FNSMIDCLCRAHRFEDALDCLSEMVEW--GVPPNTITYNILIRSLCAIGDVARSLRLFQKM 386 (504)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 386 (504)
-..+...|.+.|.+..|+.-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 113444566677777777777776653 11222334556666677777777766665544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00023 Score=52.60 Aligned_cols=101 Identities=12% Similarity=0.022 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYA--PNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC--PNEATVRSLV 122 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 122 (504)
++-.++..+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|++++|...|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555666777788888888888888765311 11345666777788888888888888887765321 1244566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
.++.+.|+.++|.+.++++....|.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 7777788888888888887777654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0017 Score=56.33 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 222 TYLLLMEALYKAGRDVEGDRYLNHVFKDRLVS-----NVN-SYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
.+..++..+.+.|++++|.++|+++....... +.. .+-..+-++...|++..|.+.++.....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444555555555555555555554432211 111 1222233444556666666666665544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=50.68 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=35.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQC-KPDRFTYNILIHGICRIG--------VVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3444444555555555555555555 455555555555444321 1223444444444444455555555444
Q ss_pred HHH
Q 048258 88 DGF 90 (504)
Q Consensus 88 ~~~ 90 (504)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.004 Score=52.25 Aligned_cols=57 Identities=11% Similarity=0.193 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
.+...|.+.|.+..|..-++.+++.-+. ........+..+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3444555555565566555555544221 12334445556666666666666555444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=54.99 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048258 408 MNKIEKAEKAFFSMLTLGLR-PDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHD 486 (504)
Q Consensus 408 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 486 (504)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ ...+ +.+......++.++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777765321 1334445567777777777777777777 3221 1223444455777777777777777
Q ss_pred HHHH
Q 048258 487 IVKT 490 (504)
Q Consensus 487 ~~~~ 490 (504)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00047 Score=51.86 Aligned_cols=95 Identities=8% Similarity=-0.065 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (504)
.....+...+...|++++|..+|+.+...++. +..-|..+..++-..|++++|+..|......++ .|+..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 34444455555555555555555555554433 444455555555555555555555555555442 2445555555555
Q ss_pred hcCCchHHHHHHHHHHH
Q 048258 301 CKDAEVHKTRELLVMLL 317 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~ 317 (504)
...|+.+.|.+.|+..+
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.012 Score=51.31 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=53.2
Q ss_pred HhcCCchHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 048258 300 HCKDAEVHKTRELLVMLLECG---FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDV 376 (504)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (504)
..+.|++..|.+.|.+.+... ..++...|.....+..+.|+.++|+.-.+...+.+. .-...|..-..++...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHH
Confidence 345677777777777766432 344555566666666677777777777777665420 0111333334455566777
Q ss_pred HHHHHHHHHHHhC
Q 048258 377 ARSLRLFQKMQAD 389 (504)
Q Consensus 377 ~~a~~~~~~~~~~ 389 (504)
++|.+-++...+.
T Consensus 338 e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 338 EEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00019 Score=59.29 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=58.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 048258 55 ICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKA 134 (504)
Q Consensus 55 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (504)
+.+.++|.+|+..|.+..+.. +.|++.|..-..+|++.|.++.|++-.+.....+. .-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHHH
Confidence 455667777777777776663 34555566666667777777777777766665521 1233666677777777777777
Q ss_pred HHHHHHHHhcCCC
Q 048258 135 FELLIRFMEREPL 147 (504)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (504)
.+.|++.++..|.
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 7777776666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00079 Score=53.44 Aligned_cols=114 Identities=15% Similarity=0.032 Sum_probs=59.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
..+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++..+... .+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3445555555555666666666665554321111 23455555555566666666666665555421 13334444445
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 124 GVFRCLD--------------PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 124 ~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
++...|+ +++|.+.+++.....|.. +..++..+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN----YIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh----HHHHHHHHHhcC
Confidence 5555444 467777887777765432 444444444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.006 Score=46.82 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=91.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHhH
Q 048258 322 KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR---ISPDIYTF 398 (504)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 398 (504)
.|+...--.|..+..+.|+..+|...|++...--+..|....-.+.++....+++..|...++++-+.. -.|| ..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 466666667777788888888888888887765555677777777777777888888888888776652 1223 34
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 399 NALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 399 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
..+.+.+...|++.+|+..|+..... -|+...-......+.+.|+.+++..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45667777788888888888887774 45555545555666777777766655554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0013 Score=61.69 Aligned_cols=135 Identities=10% Similarity=-0.032 Sum_probs=73.8
Q ss_pred CCCHHhHHHHHHHHHh--cC---CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc--------CChhhHHHHHHHHHH
Q 048258 42 KPDRFTYNILIHGICR--IG---VVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA--------KRVAEVFRVLEIMKE 108 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 108 (504)
+.+..+|...+++... .+ +...|+.+|++..+.. +-+...|..+..++... .+...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5566666666665432 22 2556777777776653 22233444433333211 112233333333333
Q ss_pred c-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhC
Q 048258 109 R-NVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 109 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (504)
. ....++..+..+.......|++++|...+++.....+ +...|..+...+...|+.++|.+.+++....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2 1223445555555555566777777777777777664 3456666777777777777777777776554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.021 Score=52.54 Aligned_cols=410 Identities=10% Similarity=0.023 Sum_probs=225.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDR-FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
..|..++.---...+.+.+..++..+... -|.. ..|......-.+.|..+.+.++|++..+ |++.+...|...+..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 34555665555555667777777777754 3443 3455666666778899999999999886 466677778777766
Q ss_pred HH-hcCChhhHHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHH---hcC
Q 048258 90 FC-NAKRVAEVFRVLEIMKER-NVC-PNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRL---SNN 163 (504)
Q Consensus 90 ~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~ 163 (504)
+. ..|+.+.....|+.+... |.. .....|...+..-..++++.....+++++++... ..++.....| ...
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHHhc
Confidence 55 447788888888888765 321 3455677788877888899999999999887522 2222222111 111
Q ss_pred ------CChHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHc-cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 048258 164 ------SMASEAAAILRKMGDR----GYLPESSTFDYTVTCLVT-GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYK 232 (504)
Q Consensus 164 ------~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (504)
...+++.++-.....+ ...+....+...+.-... .+.++++...+...... --..+-.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~-----------~~~~~~~ 267 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI-----------HEKVYQK 267 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH-----------HHHHHHh
Confidence 1122222222211110 000011111111111000 11111111111111110 0011112
Q ss_pred cCCcHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc
Q 048258 233 AGRDVEGDRYLNHVFKDR-------LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305 (504)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (504)
.....+....++...+.. ..++...|...+......|+.+.+.-+|+...-.- ..-...|-..+......|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCc
Confidence 222223333333333221 12245678888888889999999999998876431 1122344444444455588
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHH---H
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI-TYNILIRSLCAIGDVARSL---R 381 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~---~ 381 (504)
.+.+..++.+..+...+..+.+--.-....-..|++..|..+++.+...- |+.. .-..-+....+.|+.+.+. .
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 88888888777665444333322222223445789999999999998863 4433 3333445556778888777 3
Q ss_pred HHHHHHhCCCCCCHHhHHHHHH-----HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 048258 382 LFQKMQADRISPDIYTFNALIQ-----SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSG 444 (504)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (504)
++...... .-+......+.- .+.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 425 l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 33333322 112222222221 233457889999999999886 3566677777777776655
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.002 Score=55.88 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----Chh-hHHHHHHHHhcCCchHHHHHHHHHHHHCC--CCc--cH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-----NLV-TFNTLISGHCKDAEVHKTRELLVMLLECG--FKP--DK 325 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~ 325 (504)
.++..+...+.+.|++++|.++|+++....... +.. .+...+-++...||...|.+.++...... +.. ..
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 345567778889999999999999887653221 111 22233445667789999999999887542 222 23
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 048258 326 FTFNSMIDCLCRA--HRFEDALDCLSEMVE 353 (504)
Q Consensus 326 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~~ 353 (504)
.....|+.++-.. ..+..++.-|+.+.+
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 4555666665432 335555555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.018 Score=50.90 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=44.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+.|..+|-.+++-+..+|.+++.+++++++...- +--+.+|..-+++-...+++.....+|.+.... ..+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k--~l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKK--SLNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--hccHhHHHHH
Confidence 4455556666666666666666666666665321 223345555555555556666666666666554 2344455554
Q ss_pred HH
Q 048258 87 ID 88 (504)
Q Consensus 87 ~~ 88 (504)
+.
T Consensus 116 l~ 117 (660)
T COG5107 116 LE 117 (660)
T ss_pred HH
Confidence 44
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00054 Score=61.32 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=56.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHH
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIE 412 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 412 (504)
..+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|+..++++.... +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34555666777777777666653 3355566666666666677777776666666642 234455666666666666666
Q ss_pred HHHHHHHHHHhC
Q 048258 413 KAEKAFFSMLTL 424 (504)
Q Consensus 413 ~a~~~~~~~~~~ 424 (504)
+|...|+++++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666666663
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.017 Score=50.46 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
.....+.+..++..|+..+..+.+.. +.+...|.--+..+...|++++|.-=.++-.
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 34445556667777777777777664 4445555555556666666666665554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0027 Score=48.66 Aligned_cols=157 Identities=14% Similarity=-0.003 Sum_probs=108.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
+..+..+.=|++....-..+-... .|++..--.|..++.+.|++.+|...|++...--+.-|......+.++....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~--ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAI--APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 334444444555544433333322 567777777888899999999999999998875566688888888888888899
Q ss_pred hhhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNV-CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILR 174 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (504)
+..|...++.+-+.+. ..++.....+.+.+...|.+.+|...|+....-.|.+....+.. ..+.+.|+.+++..-+.
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~--e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYA--EMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH--HHHHHhcchhHHHHHHH
Confidence 9999999998877641 11333455677888889999999999999888777665554432 23456676666554444
Q ss_pred HH
Q 048258 175 KM 176 (504)
Q Consensus 175 ~~ 176 (504)
.+
T Consensus 218 ~v 219 (251)
T COG4700 218 AV 219 (251)
T ss_pred HH
Confidence 33
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.4e-05 Score=48.54 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=37.5
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 21 VKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
.+.|++++|+..|+.+.+.. |.+...+..+..+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777777777664 446667777777777777777777777777765
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.02 Score=50.63 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=74.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHh------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH-
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFT------YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC- 91 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 91 (504)
.+.+++++.+|.++|.++.+.. ..++.. -+.++++|.. .+.+.....+....+. .| ...|..+..++.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 3567788888888888887653 223222 2456666654 3455555555555443 22 234555554433
Q ss_pred -hcCChhhHHHHHHHHHHc--CCCC---ChhhH---------HHHHHHHHhcCChHHHHHHHHHHHhcC----CCcchhH
Q 048258 92 -NAKRVAEVFRVLEIMKER--NVCP---NEATV---------RSLVHGVFRCLDPHKAFELLIRFMERE----PLTQKLV 152 (504)
Q Consensus 92 -~~g~~~~a~~~~~~~~~~--~~~~---~~~~~---------~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 152 (504)
+.+.+.+|.+.+..-.+. +..+ |.... ...+.+++..|++.+++.++.++...- ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 667888888887776654 2211 11111 122445566677777776666655432 2245555
Q ss_pred HHHHHHHH
Q 048258 153 CNTLLYRL 160 (504)
Q Consensus 153 ~~~l~~~~ 160 (504)
|+.++-.+
T Consensus 170 yd~~vlml 177 (549)
T PF07079_consen 170 YDRAVLML 177 (549)
T ss_pred HHHHHHHH
Confidence 55544333
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00097 Score=52.74 Aligned_cols=81 Identities=11% Similarity=0.074 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048258 325 KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPP--NTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402 (504)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (504)
...+..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3344555555666677777777777766542221 12356666667777777777777777766542 22233444444
Q ss_pred HHHH
Q 048258 403 QSFC 406 (504)
Q Consensus 403 ~~~~ 406 (504)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.022 Score=50.42 Aligned_cols=378 Identities=14% Similarity=0.140 Sum_probs=178.7
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCC------------cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCChhh
Q 048258 56 CRIGVVDEALRLVKQMEGL--GYAP------------NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNV----CPNEAT 117 (504)
Q Consensus 56 ~~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~ 117 (504)
-+.+.++.|++.+...... +..| |-..-+..++++...|++.++..+++++..+=+ ..+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4667788888877776654 2221 111224455666778888888887777765432 256667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc
Q 048258 118 VRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVT 197 (504)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (504)
|+.++-.+.+ ..|-++.+.....--.-|..++..|.+.=. .++.-.-..+.|....+..++....-
T Consensus 170 yd~~vlmlsr--------SYfLEl~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSR--------SYFLELKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhH--------HHHHHHHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 7765555443 233333332111111122223333322111 11110111223444444444433322
Q ss_pred c--CChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCCcHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCC
Q 048258 198 G--LDLNETCGILDTFIKRGVKPRFST-YLLLMEALYKAGRDVEGDRYLNHVFKDRLV----SNVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 198 ~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 270 (504)
. ....--.++++.....-+.|+... ...+...+.. +.+++..+.+.+....+. .-..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 223333444444444444454433 2223333332 445555554444433211 123456777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhH-------HHHHHHHh-cCC---chHHHHHHHHHHHHCCCCccHH-HHHHHH---HHH
Q 048258 271 MDRATEICREMRDRDIAPNLVTF-------NTLISGHC-KDA---EVHKTRELLVMLLECGFKPDKF-TFNSMI---DCL 335 (504)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~~~ 335 (504)
...|...+.-+...++ +...- ..+-+..+ ... +...-+.+|+.....++ |.. .-..++ .-+
T Consensus 314 T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 314 TEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHL 389 (549)
T ss_pred HHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHH
Confidence 8888877777665432 22111 11222222 111 12233344444444322 221 112222 223
Q ss_pred HhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHH
Q 048258 336 CRAHR-FEDALDCLSEMVEWGVPPNTITYNILI----RSLCA---IGDVARSLRLFQKMQADRISPDI----YTFNALIQ 403 (504)
Q Consensus 336 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 403 (504)
-+.|. -++|+.+++.+.+.. +-|...-|.+. ..|.. ...+.+-..+-+-+.+.|++|-. ..-|.|.+
T Consensus 390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 44454 677888887777642 22333322222 12211 12233333333444455655532 23333333
Q ss_pred H--HHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048258 404 S--FCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 404 ~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
+ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|..++..+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3 3456777777666555555 4677777777777777777777777777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.011 Score=48.33 Aligned_cols=169 Identities=16% Similarity=0.097 Sum_probs=83.8
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK 267 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (504)
.....+...|++.+|++.|+.+.... .+--......++.++.+.|+++.|...++.+++..|......+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 34445556677777777777776652 1223455666777777777777777777777766544333323322222221
Q ss_pred cCC-------------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 048258 268 VNM-------------MDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC 334 (504)
Q Consensus 268 ~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (504)
... ..+|... +..++.-|-.+.-..+|...+..+... =...--.+...
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 111 1222222 333344444444445554444444321 01111224555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCCHHHH
Q 048258 335 LCRAHRFEDALDCLSEMVEWGVPPNTI----TYNILIRSLCAIGDVARS 379 (504)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a 379 (504)
|.+.|.+..|..-++.+++. -|++. ....++.++.+.|..+.+
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777777777764 22222 345566666676666543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0013 Score=54.91 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC---CHHHHHHH
Q 048258 341 FEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMN---KIEKAEKA 417 (504)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~ 417 (504)
.+....-++.-...+ +-|...|..|...|...|+...|..-|.+..+.. .++...+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 444444444444432 4466677777777777777777777777766652 344555555555543322 34566677
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 418 FFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
|++++... +-|......|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777642 223444555556667777777777777777764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0011 Score=52.52 Aligned_cols=112 Identities=13% Similarity=-0.013 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhh-hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhcCChhhHHHH
Q 048258 26 IDLAYLKFQQMS-VDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAP--NVYTYTILIDGFCNAKRVAEVFRV 102 (504)
Q Consensus 26 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 102 (504)
+..+...+..+. ..+.......|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444454543 22212234556666777777788888888888876553222 234677777777788888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHH-------hcCChHHHHHHH
Q 048258 103 LEIMKERNVCPNEATVRSLVHGVF-------RCLDPHKAFELL 138 (504)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~ 138 (504)
++...... +.....+..+...+. ..|+++.|...+
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 88877653 223344555555555 667766444333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00089 Score=46.58 Aligned_cols=79 Identities=13% Similarity=0.205 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHHhHHHHHHHHHhcC--------ChhhHHHHHHHHHHcCCCCChhhHH
Q 048258 49 NILIHGICRIGVVDEALRLVKQMEGLGY-APNVYTYTILIDGFCNAK--------RVAEVFRVLEIMKERNVCPNEATVR 119 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (504)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-+++.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999887542 3456778888998888999999998
Q ss_pred HHHHHHHh
Q 048258 120 SLVHGVFR 127 (504)
Q Consensus 120 ~l~~~~~~ 127 (504)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0023 Score=59.99 Aligned_cols=145 Identities=14% Similarity=0.065 Sum_probs=87.3
Q ss_pred CCCccHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 048258 320 GFKPDKFTFNSMIDCLCR--A---HRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG--------DVARSLRLFQKM 386 (504)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~ 386 (504)
..+.+...|..++.+... . ++...|..+|++..+.. +.....|..+..++.... +...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345567777777776432 2 23667888888888763 223344554444443221 122333333333
Q ss_pred HhC-CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 048258 387 QAD-RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS 465 (504)
Q Consensus 387 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 465 (504)
... ....+...+..+.-.....|++++|...++++++. .|+...|..+...+...|+.++|.+.++++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 12334456666655566678888888888888875 45666777777788888888888888888776 35655
Q ss_pred hhHH
Q 048258 466 YTSN 469 (504)
Q Consensus 466 ~~~~ 469 (504)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 5544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=4e-05 Score=40.49 Aligned_cols=28 Identities=43% Similarity=0.795 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=46.36 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=30.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
...+.+.|++++|+..|+++.+.. +-+...+..+..++...|++++|+..|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555555555554 334555555555555555555555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=5e-05 Score=40.09 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQ 40 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 40 (504)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.042 Score=51.47 Aligned_cols=201 Identities=11% Similarity=0.025 Sum_probs=116.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHH----------HHHhcCCHHHHHHHHHHHHhCCC
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIH----------GICRIGVVDEALRLVKQMEGLGY 76 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~a~~~~~~~~~~~~ 76 (504)
.|.+..|..+.......-.++.|...|-+.... +.......|-. .-+--|.+++|.++|-.+.++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 588899999998888888999999888766542 22221111111 11224889999999988876531
Q ss_pred CCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhH
Q 048258 77 APNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPN----EATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLV 152 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
.|..+.+.|++-...++++.- |...| ...++.+...+.....|++|.+.|..--..
T Consensus 766 ---------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 766 ---------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred ---------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 345556667776666555431 11112 235667777777777777777776553211
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 048258 153 CNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYK 232 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (504)
...+.++.+...+++-+.+-+.+.+ +....-.+..++.+.|.-++|.+.+-+. + .| ...+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHH
Confidence 1234444444445444444443332 4555666777777777777776665332 1 11 123445556
Q ss_pred cCCcHHHHHHHHH
Q 048258 233 AGRDVEGDRYLNH 245 (504)
Q Consensus 233 ~~~~~~a~~~~~~ 245 (504)
.+++.+|.++.+.
T Consensus 891 LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 891 LNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0035 Score=49.75 Aligned_cols=81 Identities=10% Similarity=-0.003 Sum_probs=36.8
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKP--RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
..+...+...|++++|...+++..+....+ ....+..++..+.+.|++++|...+.++.+..+. +...+..+..++.
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 117 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 333444444455555555554444332111 1234455555555555555555555555544332 3344444444444
Q ss_pred hcCC
Q 048258 267 KVNM 270 (504)
Q Consensus 267 ~~~~ 270 (504)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 4444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00068 Score=56.18 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=55.5
Q ss_pred HhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048258 300 HCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARS 379 (504)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 379 (504)
+.+.+++.+|+..|...++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 445566666666666666653 2355555566666666666666666666666542 22334566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHhH
Q 048258 380 LRLFQKMQADRISPDIYTF 398 (504)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (504)
++.|++.++. .|+-.+|
T Consensus 169 ~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHhhhcc--CCCcHHH
Confidence 6666666653 4544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=46.88 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---c-ccHHHHHH
Q 048258 365 ILIRSLCAIGDVARSLRLFQKMQADRISPD--IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD---N-FSYSALIK 438 (504)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~-~~~~~l~~ 438 (504)
.+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++.... .|+ . .....+.-
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 345566777888888888888887765544 335666777778888888888888877764 243 1 12222334
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 048258 439 ALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~ 458 (504)
++...|+.++|+..+-....
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 56677888888887766553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0002 Score=46.61 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG-VVDEALRLVKQMEG 73 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 73 (504)
+.+|..+...+...|+++.|+..|++..+.+ +.+...|..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555556666666666666666655554 344555555555555555 45666665555544
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00035 Score=44.81 Aligned_cols=59 Identities=29% Similarity=0.364 Sum_probs=37.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+...+...|++++|...|+++++.. +-+...+..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445666777777777777777653 2255566666777777777777777777766543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.037 Score=48.07 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=67.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH--hcCChhhHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCChHH
Q 048258 58 IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC--NAKRVAEVFRVLEIMKERNVCPNEA--TVRSLVHGVFRCLDPHK 133 (504)
Q Consensus 58 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 133 (504)
.|+-..|.++-.+..+. +..|......|+.+-. -.|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 46666676666655432 2334444555554433 357777777777777742 2221 12333333345677777
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 134 AFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
|..+-++.-..-+. -...+...+...+..|+++.|+++.+.-+.
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 77776666655444 445666677777777777777777766544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.019 Score=46.95 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=21.6
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcH
Q 048258 191 TVTCLVTGLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
+...|.+.|.+..|..-++.+++.- .+........++.++.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 3445555566666665555555541 1111233444455555555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0049 Score=51.55 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=54.9
Q ss_pred CCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCcchhHH
Q 048258 77 APNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL---DPHKAFELLIRFMEREPLTQKLVC 153 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 153 (504)
+-|...|-.|..+|.+.|+++.|...|....+.. .+++..+..+..++.... ...++.++|++++..++. +..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 3455566666666666666666666666665542 234444444444443322 234555666666555444 44444
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhC
Q 048258 154 NTLLYRLSNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (504)
..+...+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 45555566666666666666666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.026 Score=46.13 Aligned_cols=138 Identities=17% Similarity=0.231 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH-----H
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNA-----L 401 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 401 (504)
+.+.++.++.-.+.+.-....+++.++...+.++.....+++.-.+.||.+.|...|++..+..-..+...++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45566777777888888888888888876677788888888888888998888888887765433334333333 3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 048258 402 IQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYT 467 (504)
Q Consensus 402 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 467 (504)
...|.-++++..|...+.+....+ ..|+...|.-.-+..-.|+...|++.++.+.+. .|...+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 344556678888888888887764 334444555555556678888899988888875 444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.002 Score=55.83 Aligned_cols=282 Identities=12% Similarity=-0.025 Sum_probs=149.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CcHHhHHHHHH
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPD----RFTYNILIHGICRIGVVDEALRLVKQME----GLGYA-PNVYTYTILID 88 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~ 88 (504)
.-+++.|+.+..+.+|+.+++-| .-| ...|..|..+|.-.+++++|+++...=. ..|-+ -...+-..|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45678888888888888888766 323 3346667777777778888877644311 00100 01223333444
Q ss_pred HHHhcCChhhHHHHHHHHH----HcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 89 GFCNAKRVAEVFRVLEIMK----ERNV-CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
.+--.|.+++|+-...+-. +.|- ......+..+...|...|+.-... +|. +...++.=+ .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pe-e~g~f~~ev-----~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APE-EKGAFNAEV-----T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------Chh-hcccccHHH-----H
Confidence 4445566666665433322 1111 012223444444554443321000 000 000000000 0
Q ss_pred CChHHHHHHHHH-------HhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHh----cCCC-ccHHHHHHHHHHHH
Q 048258 164 SMASEAAAILRK-------MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIK----RGVK-PRFSTYLLLMEALY 231 (504)
Q Consensus 164 ~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~ 231 (504)
..++.|.++|.+ +.+++ .....|..+...|.-.|+++.|+...+.-+. .|-+ .....+..+..++.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~--aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRL--AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHH--hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 011222233322 21111 1234566666677777888888877664332 2211 12356777888888
Q ss_pred hcCCcHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHh
Q 048258 232 KAGRDVEGDRYLNHVFKD----RL-VSNVNSYNMVIDCFCKVNMMDRATEICREMRDR-----DIAPNLVTFNTLISGHC 301 (504)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~ 301 (504)
-.|+++.|.+.|+..... +- .........+.+.|.-..++++|+.++.+-... +..-....+.++..+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888999998888765532 21 123344556777777777888888877543221 11224567778888888
Q ss_pred cCCchHHHHHHHHHHH
Q 048258 302 KDAEVHKTRELLVMLL 317 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~ 317 (504)
..|..++|+...+.-.
T Consensus 327 alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHL 342 (639)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 8888888887766544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0074 Score=43.81 Aligned_cols=90 Identities=18% Similarity=0.054 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HHhHHHHHHH
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPD--RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN----VYTYTILIDG 89 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 89 (504)
...++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++..... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44555556666666666666665553322 2334445555666666666666666655431 22 1111112223
Q ss_pred HHhcCChhhHHHHHHHHH
Q 048258 90 FCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~ 107 (504)
+...|+.++|+..+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 445566666666554443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=52.18 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=73.8
Q ss_pred HHHHHHhhhCCCCCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc-----------
Q 048258 30 YLKFQQMSVDQCKPDRFTYNILIHGICR-----IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA----------- 93 (504)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 93 (504)
...|+..... ..+..+|..++..+.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3445555322 5688888888988875 477888888899999999999999999999886431
Q ss_pred -----CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 048258 94 -----KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLD 130 (504)
Q Consensus 94 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (504)
.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345677788888888888888888777777665543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00031 Score=45.59 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 57 RIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 57 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
+.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666665543 235555556666666666666666666666654
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00077 Score=43.82 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC-ChhhHHHHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK-RVAEVFRVLEIMKE 108 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 108 (504)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555556666666666666666665553 334555555555555555 46666666655554
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.002 Score=51.07 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=75.4
Q ss_pred CCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhc----------------CCHHHH
Q 048258 6 ISPSTRLYNAVIDALVKS-----NSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRI----------------GVVDEA 64 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a 64 (504)
-..+-.+|..+++.+.+. |..+=....+..|.+-|+..|..+|+.|+..+=+. .+-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 455677888888888654 67777888889999999999999999999987652 234789
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 65 LRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
++++++|...|+-||..++..+++.+.+.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 9999999999999999999999999976653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0022 Score=55.54 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHh
Q 048258 328 FNSMIDCLCRAHRFEDALDCLSEMV----EWGVP-PNTITYNILIRSLCAIGDVARSLRLFQKMQA----DR-ISPDIYT 397 (504)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~ 397 (504)
|..|.+.|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .| -.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3444444444556666655544322 11211 1122455556666666666666665554422 11 1112233
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 398 FNALIQSFCRMNKIEKAEKAFFSMLTL----G-LRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 398 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
.-+|...|.-..++.+|+.++.+-+.. + .--....+.+|..++...|..++|..+.+...
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444555555555555565555443210 0 01123344555555555555555555554443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0027 Score=53.67 Aligned_cols=85 Identities=8% Similarity=0.054 Sum_probs=35.5
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--chhHHHHHHHHHhcCCC
Q 048258 92 NAKRVAEVFRVLEIMKERNVCPNE----ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT--QKLVCNTLLYRLSNNSM 165 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 165 (504)
+.|++++|+..|+.+.+.. |+. ..+..+...|...|++++|...|+.+....|.. ....+..+...+...|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 3344444444444444431 221 233444444444444444444444444433321 12222233334444445
Q ss_pred hHHHHHHHHHHhh
Q 048258 166 ASEAAAILRKMGD 178 (504)
Q Consensus 166 ~~~a~~~~~~~~~ 178 (504)
.++|..+|+.+..
T Consensus 233 ~~~A~~~~~~vi~ 245 (263)
T PRK10803 233 TAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0049 Score=52.15 Aligned_cols=99 Identities=12% Similarity=-0.017 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCChhhHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPN----VYTYTILIDGFCNAKRVAEVFRVLEIMKERNV--CPNEATVRS 120 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ 120 (504)
.|...+..+.+.|++++|+..|+.+.+.. |+ ..++..+..+|...|++++|...|+.+.+.-. +.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566666666666666542 22 23455566666666666666666666665411 112233444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+..++...|+.++|.+.|+++.+..|.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 455566666677777776666666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.03 Score=51.91 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH----------
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF---------- 326 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 326 (504)
+...+...+.+...+.-|.++|..|-+. ..+++.....++|++|..+-+...+. .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3334444444455555555666555332 23445555566666666655554432 12211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 327 -TFNSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 327 -~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
-|...-++|.+.|+-.+|..+++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122223455666777777777776654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0016 Score=42.85 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=35.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
..+.+.++++.|.++++.+...+ |.++..+......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44566666666666666666654 445555666666666666666666666666655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.047 Score=41.62 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 048258 222 TYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHC 301 (504)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (504)
........+...|++++|..+|..+.-.++. +..-+..|..++-..+++++|+..|......+. -|+..+-....++.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHH
Confidence 3455566667778888888888777766544 566666777777777888888887776655443 25555566667777
Q ss_pred cCCchHHHHHHHHHHHH
Q 048258 302 KDAEVHKTRELLVMLLE 318 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~~ 318 (504)
..|+.+.|...|.....
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 77888888887777766
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.089 Score=43.18 Aligned_cols=132 Identities=8% Similarity=-0.003 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHH-----HH
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCN-----TL 156 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 156 (504)
..+.++..+.-.|++.-...++.+..+.+.+.++.....+.+.-.+.||.+.|...|+++.+.....+...++ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4555666666677788888888888877666677777888888888888888888888776543322322222 23
Q ss_pred HHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 157 LYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
...+.-.+++.+|...+.++...... +....|.-.-+..-.|+..+|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455566777777777776654322 3333344344444556677777777777665
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.013 Score=44.58 Aligned_cols=90 Identities=13% Similarity=-0.088 Sum_probs=59.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH 132 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (504)
.-+...|++++|..+|.-+...+ .-|..-|..|..++-..+++++|+..|......+. -|+........++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33456677777777777776654 23555566666666667777777777776665542 35555666667777777777
Q ss_pred HHHHHHHHHHhc
Q 048258 133 KAFELLIRFMER 144 (504)
Q Consensus 133 ~a~~~~~~~~~~ 144 (504)
.|...|+.+...
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 777777777664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.17 Score=44.94 Aligned_cols=186 Identities=17% Similarity=0.083 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhCCCCC---ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHh---cCCHH
Q 048258 272 DRATEICREMRDRDIAP---NLVTFNTLISGHCKDAEVHKTRELLVMLLECG---FKPDKFTFNSMIDCLCR---AHRFE 342 (504)
Q Consensus 272 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~ 342 (504)
++..+.+..+...=..| +..+...++-.|....+++...++.+.+.... +.-...+-.....++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 34444445554431122 33344455556888899999999999887651 11223333344556666 88999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC-H-
Q 048258 343 DALDCLSEMVEWGVPPNTITYNILIRSLCA---------IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNK-I- 411 (504)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~- 411 (504)
+|+.++..+......+++.+|..+...|-. ....++|+..|.+.-+. .|+...=-.++..+...|. +
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 999999986665567788888888877632 12356677777766554 3554322222222233332 2
Q ss_pred --HHHHHHH---HH-HHhCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 412 --EKAEKAF---FS-MLTLGLRPDNF---SYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 412 --~~a~~~~---~~-~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
.+..++- .. +.+.|...... .+.+++.++.-.|++++|.+..++|...
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2233332 11 11233222222 2346677777788888888888888765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0044 Score=40.74 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=36.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
..|.+.++++.|+++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45566667777777777766654 335556666666666667777777777766665
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.25 Score=45.85 Aligned_cols=410 Identities=11% Similarity=0.015 Sum_probs=222.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVY-TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
.+...|..++.---.....+.+..++..+... -|... -|......=.+.|..+.+.++|++.... ++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 44455666665444444556777777777754 34433 3333444345678899999999998864 45555666666
Q ss_pred HHHHH-hcCChHHHHHHHHHHHhcCC--CcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc-
Q 048258 122 VHGVF-RCLDPHKAFELLIRFMEREP--LTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVT- 197 (504)
Q Consensus 122 ~~~~~-~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 197 (504)
+..+. ..|+.+.....|+.....-. -.....|...+..-..++++.....+++++++.. ...++.....|.+
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHH
Confidence 55444 45788888888888776422 1245678888888888889999999999988742 2222222222211
Q ss_pred --c------CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHH-HHHHHHHhCCCCCCHHHHHHH-------
Q 048258 198 --G------LDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD-RYLNHVFKDRLVSNVNSYNMV------- 261 (504)
Q Consensus 198 --~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l------- 261 (504)
. ...+++.++-...... ......+...+-. ...+.+-..... -....+.+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~~-l~~~~~~l~~~~~~~ 261 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSKS-LTEEKTILKRIVSIH 261 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccch-hhHHHHHHHHHHHHH
Confidence 1 1122222222211110 0000000111100 001111100000 00011111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CC----CChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 048258 262 IDCFCKVNMMDRATEICREMRDRD---IA----PNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC 334 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (504)
-..+...-........|+.-.... ++ ++..+|..-+..-...|+.+.+.-+++++.--= ..=...|-..+.-
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~ 340 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARW 340 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHH
Confidence 112222223333333444433331 22 245677888888888999999999998875310 1112334444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHccCCHHH
Q 048258 335 LCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY-TFNALIQSFCRMNKIEK 413 (504)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 413 (504)
....|+.+-|..++....+...+..+.+--.-....-..|++..|..+++.+.+.- |+.. .-..-+..-.+.|..+.
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~ 418 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLED 418 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhh
Confidence 55569999888888877765444333332222233345789999999999998863 4433 22233444567788888
Q ss_pred HH---HHHHHHHhCCCCCCcccHHHHHHH-----HHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 414 AE---KAFFSMLTLGLRPDNFSYSALIKA-----LIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 414 a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
+. .++....+. .-+..+...+.-- +.-.++.+.|..++.++.+. ++++-..|..+++.....+
T Consensus 419 ~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 419 ANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 77 333333332 2232333333222 33467889999999999986 4566667777776665544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.007 Score=46.52 Aligned_cols=73 Identities=25% Similarity=0.323 Sum_probs=52.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE-----RNVCPNEATV 118 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 118 (504)
..+...++..+...|++++|+.+.+.+.... +.|...|..+|.+|...|+...|.+.|+.+.+ .|+.|++.+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3456677778888899999999999988775 55788889999999999999999998887753 4788877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.01 Score=45.55 Aligned_cols=124 Identities=12% Similarity=0.078 Sum_probs=77.7
Q ss_pred hhhHHHHH---HHHHhcCCHHHHHHHHHHhhhC--C-CCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCcHHh
Q 048258 10 TRLYNAVI---DALVKSNSIDLAYLKFQQMSVD--Q-CKPDRFTYNILIHGICRIGVV-DEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 10 ~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~ 82 (504)
...|..++ ......++.+.+...++++... | +-++... ..| ......++... ..+
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-----------~~W~~~~r~~l~~~~-------~~~ 64 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-----------EEWVEPERERLRELY-------LDA 64 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-----------STTHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-----------cHHHHHHHHHHHHHH-------HHH
Confidence 34455553 3345678899999988888765 2 1122111 111 11222222222 235
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCcchhH
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME-----REPLTQKLV 152 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 152 (504)
...++..+...|++++|...++.+.... +.+...+..++.++...|+...|.+.|+++.. .|..|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 6667788889999999999999999885 35778999999999999999999999988764 255555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.26 Score=43.08 Aligned_cols=218 Identities=12% Similarity=0.116 Sum_probs=109.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC-CCccHH--HHHHHHHHHH---hcCC
Q 048258 267 KVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG-FKPDKF--TFNSMIDCLC---RAHR 340 (504)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~ 340 (504)
+.|..+.|..+-+..-..-.. -...+...+...+..|+|+.|+++.+.-.... +.++.. .-..|+.+-. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 445555555555444433211 23445555555555555555555555443221 112211 1111221111 1234
Q ss_pred HHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 048258 341 FEDALDCLSEMVEWGVPPNTIT-YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFF 419 (504)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 419 (504)
...|...-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+ .+..-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l--Y~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL--YVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH--HHHhcCCC--cHHHHHH
Confidence 55555555555543 344332 223345667777777777777777765 344333322 22345554 2222222
Q ss_pred HHHhC-CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 048258 420 SMLTL-GLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQ-GRFEEAHDIVKTSKERG 495 (504)
Q Consensus 420 ~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 495 (504)
+..+. .++|| .+....+..+....|++..|..--+.... ..|....|-.+.+.-... |+-.+++.++.+..+.-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 22211 13343 44455566666777777777776666655 366677776666655444 77777777777776653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.47 Score=45.94 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD--RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
....-+..+.+...++.|+.+-..-. ..++ ..........+.+.|++++|...|-+.... +.|. .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 45566778888888888888755432 1222 122333445556789999998887776643 2322 24555
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
|....+..+....++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66666777777788888887764 44455677888888888777666554433 1110 11123344555555555555
Q ss_pred HHHHHH
Q 048258 170 AAILRK 175 (504)
Q Consensus 170 ~~~~~~ 175 (504)
.-+-.+
T Consensus 483 ~~LA~k 488 (933)
T KOG2114|consen 483 ELLATK 488 (933)
T ss_pred HHHHHH
Confidence 544433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.21 Score=41.23 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=48.0
Q ss_pred HHHHccCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 193 TCLVTGLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
..-.+.|++++|.+.|+.+.... -+-...+...++.++.+.+++++|....++..+..+......|...|.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 33455677777777777776552 233456677777778888888888888887777665544455555555554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.34 Score=43.07 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=18.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 359 NTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
+.-.+..++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3334455556666666666666666666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0026 Score=42.51 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=37.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCC---C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQN--GCNP---D-SYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+++.+..+|...|++++|+..+++..+. ...+ + ..++..++.++...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666666666666532 0111 1 33566667777777777777777776654
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.028 Score=49.14 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=58.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSY-TSNLILETL 475 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 475 (504)
+++.+..++.+.+++..|++.-++.++.+ ++|...+-.-..+|...|+++.|+..|+++.+. .|+.. +-..++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 45566667777777777777777777664 445555555667777777777777777777773 55433 333444433
Q ss_pred HhcCCH-HHHHHHHHHHHHc
Q 048258 476 VQQGRF-EEAHDIVKTSKER 494 (504)
Q Consensus 476 ~~~g~~-~~a~~~~~~~~~~ 494 (504)
.+..++ +...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 333333 3346666666543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0047 Score=41.30 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=11.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
++..+..++...|++++|++++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444443
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.043 Score=40.34 Aligned_cols=51 Identities=8% Similarity=0.203 Sum_probs=29.6
Q ss_pred CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCChhhHHHHHHHHH
Q 048258 76 YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER-NVCPNEATVRSLVHGVF 126 (504)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 126 (504)
..|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|+....
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666666666666666666666666666543 44444555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.26 Score=40.09 Aligned_cols=85 Identities=9% Similarity=-0.005 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF 126 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (504)
.|..-..+|...+++++|...+.+..+- ...| ..+-.... .+++|.-+.+++.+.+ --...+......|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnn-rslfhAAK------ayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENN-RSLFHAAK------AYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc-ccHHHHHH------HHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3444555666666777777666665532 1212 22222222 2344444555544321 11123344445566
Q ss_pred hcCChHHHHHHHHHH
Q 048258 127 RCLDPHKAFELLIRF 141 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~ 141 (504)
.+|.++.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 666666555555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.58 Score=43.96 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC---------CHH
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVS---------NVN 256 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~ 256 (504)
++...+...+.+...+..|-++|..+-+ ...+++.+...+++.+|..+.+...+.-... ...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 3344444444444555555555554432 1234445555566666655544433221100 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
-|...-.+|.+.|+-.+|..+++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222334566667777777777776543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.43 Score=41.92 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 048258 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKS 443 (504)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (504)
+..+.-+...|+...|.++-.+.. -|+...|-.-+.+++..++|++-.++... +-.+.-|...+.+|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444444455555444444332 24444555555555555555544443211 11234455555555555
Q ss_pred CChhHHHHHHHH
Q 048258 444 GRFDEAKQTFLS 455 (504)
Q Consensus 444 g~~~~a~~~~~~ 455 (504)
|...+|..++.+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555554444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.09 Score=39.13 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQC--KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
..+-.-.....+.|+++.|++.|+.+..... +-...+...++.+|.+.++++.|+..+++..+.....-...|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3344556677788999999999998887631 23455667788888899999999999998888753322345666666
Q ss_pred HHHhc
Q 048258 89 GFCNA 93 (504)
Q Consensus 89 ~~~~~ 93 (504)
+++..
T Consensus 91 gL~~~ 95 (142)
T PF13512_consen 91 GLSYY 95 (142)
T ss_pred HHHHH
Confidence 65543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.49 Score=41.58 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+|..+...-...|+.+-|..+++. .|+..-- +..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~q---VplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASKQ---VPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHHH---HHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 456666777777777777776543 4444322 3344556666666 44555554 3343 3555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.57 Score=42.55 Aligned_cols=85 Identities=12% Similarity=-0.007 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHH
Q 048258 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPN-EATVRSLVHGVFRCLDPHKAFELLI 139 (504)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (504)
..+|.++.++..+.+ +.|+.+...+..+..-.++++.+...|++....+ || ..++........-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345666666666665 4466666666666666666777777777776653 33 3345555555566677777777777
Q ss_pred HHHhcCCCc
Q 048258 140 RFMEREPLT 148 (504)
Q Consensus 140 ~~~~~~~~~ 148 (504)
+..+..|..
T Consensus 397 ~alrLsP~~ 405 (458)
T PRK11906 397 KSLQLEPRR 405 (458)
T ss_pred HHhccCchh
Confidence 766665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.072 Score=46.76 Aligned_cols=92 Identities=11% Similarity=-0.036 Sum_probs=54.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC-----CC---------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQ-----CK---------PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
...+.+.|++..|...|+++...- .+ .-..+++.+..++.+.+.+..|++..+..+..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 346788899999999988865420 01 112234444555556666666666666666554 445555
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
...=.+++...|+++.|...|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555556666666666666666666654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.076 Score=39.07 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=69.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhh---------------hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMS---------------VDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 73 (504)
|..++.++|.++++.|+.+....+.+..= .....|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 56788999999999999999999987652 112458899999999999999999999999999876
Q ss_pred C-CCCCcHHhHHHHHHHHHh
Q 048258 74 L-GYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 74 ~-~~~~~~~~~~~l~~~~~~ 92 (504)
. +++.+..+|..|++-...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 5 566678889998876543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.51 Score=39.85 Aligned_cols=122 Identities=16% Similarity=0.073 Sum_probs=60.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN 202 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (504)
......|+..+|...|.......+. +...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777777766555 244445566677777777777777776654321111111112223333333333
Q ss_pred hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 048258 203 ETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (504)
+...+-...-.. +.|...-..+...+...|+.+.|.+.+-.++
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333332221 2244444445555555555555554444433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.43 Score=38.93 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
.|..-..+|-...+++.|...+.+..+.. ..+...|+. .+.++.|.-+.+++.+. +.-+..|+-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 34444555555666666666655555321 222222221 23456666666666654 223445677778888
Q ss_pred hcCChhhHHHHHHHHHH
Q 048258 92 NAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~ 108 (504)
..|..+.|-..+++.-+
T Consensus 103 E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK 119 (308)
T ss_pred HhCCcchHHHHHHHHHH
Confidence 88988888888887754
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.36 Score=45.25 Aligned_cols=178 Identities=17% Similarity=0.097 Sum_probs=110.1
Q ss_pred HHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH------hHHHHHHHHHh----cCChhhH
Q 048258 30 YLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVY------TYTILIDGFCN----AKRVAEV 99 (504)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~a 99 (504)
.-+|..+...= || .+..++....-.|+-+.+++++.+..+.+--..+. .|...+..++. ....+.|
T Consensus 177 ~G~f~L~lSlL-Pp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSLL-PP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHhC-CH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 44555555321 33 45667777777888888888888876643111111 23333333332 3467888
Q ss_pred HHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHhcC---CCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 100 FRVLEIMKERNVCPNEATVRS-LVHGVFRCLDPHKAFELLIRFMERE---PLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
.++++.+.++ .|+...|.. -.+.+...|++++|.+.|++..... +......+-.+...+.-..++++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888876 566655433 3456677889999999998765422 222334455566778888899999999998
Q ss_pred HhhCCCCCChhhHHHHH-HHHHccCCh-------hhHHHHHHHHHhc
Q 048258 176 MGDRGYLPESSTFDYTV-TCLVTGLDL-------NETCGILDTFIKR 214 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~~~ 214 (504)
+.+.+-- +..+|.-+. .++...++. ++|.+++.++...
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 8875322 333333333 334456666 7888888876643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.084 Score=47.52 Aligned_cols=66 Identities=8% Similarity=-0.131 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDR---FTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
.++..|+.+..+|.+.|++++|+..|++..+.+ +.+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666553 2222 23556666666666666666666666653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.1 Score=43.13 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
.+--+.-+...|+..+|.++-.+.. -||-..|-.=+.+++..+++++-+++-+... .+.-|...+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3344444455555555555554443 2444455444555555555555444422211 13345555555555
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048258 443 SGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIV 488 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 488 (504)
.|+.++|.+++.+.... . ....+|.+.|++.+|.+..
T Consensus 757 ~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 55555555555443221 0 3344555555555554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.39 Score=45.07 Aligned_cols=164 Identities=11% Similarity=0.016 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhCC-CCCCh-----hhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHH
Q 048258 152 VCNTLLYRLSNNSMASEAAAILRKMGDRG-YLPES-----STFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFS 221 (504)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 221 (504)
....++....-.|+-+.+++.+....+.+ +.... -.|...+..++. ..+.+.+.++++.+.+.- |.+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~l 268 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSAL 268 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHH
Confidence 34456666666777777777776654422 22111 123333333322 345677777777777762 33333
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048258 222 TYLLLMEALYKAGRDVEGDRYLNHVFKDR---LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLIS 298 (504)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (504)
-...-.+.+...|+.++|++.++...... .......+--++-++.-.++|++|.+.|..+.+.. ..+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 44445566777788888888887655321 12233344456666777788888888888887753 223334443333
Q ss_pred -HHhcCCch-------HHHHHHHHHHH
Q 048258 299 -GHCKDAEV-------HKTRELLVMLL 317 (504)
Q Consensus 299 -~~~~~~~~-------~~a~~~~~~~~ 317 (504)
++...++. ++|.+++.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 23345555 77777777664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.056 Score=48.62 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=66.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccc
Q 048258 357 PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDI----YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS 432 (504)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 432 (504)
+.+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 445667888888999999999999999998875 4553 358888888999999999999999888752 11 2
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHhcCC
Q 048258 433 YSALIK--ALIKSGRFDEAKQTFLSMEQNGC 461 (504)
Q Consensus 433 ~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~ 461 (504)
|..+.. .+....+..+..++++.+...|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 01112233456666666666653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.75 Score=41.26 Aligned_cols=131 Identities=15% Similarity=0.226 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH-HHHH
Q 048258 360 TITYNILIRSLCAIGDVARSLRLFQKMQADR-ISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSY-SALI 437 (504)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 437 (504)
..+|...+..-.+...++.|..+|-++.+.+ +.+++..+++++..++ .|+...|..+|+--... -||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456777777788888999999999999988 6788889999998665 78899999999876664 4565554 5677
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 438 KALIKSGRFDEAKQTFLSMEQNGCNPD--SYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.-+...++-+.|..+|+..+.+ +..+ ..+|..++.--..-|+...+..+-+++...
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 8888999999999999987764 3444 568999999888999999999888888764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.26 Score=45.47 Aligned_cols=130 Identities=11% Similarity=-0.018 Sum_probs=62.8
Q ss_pred HhcCCHHHHHHHHH--HHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 048258 56 CRIGVVDEALRLVK--QMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHK 133 (504)
Q Consensus 56 ~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (504)
.-.++++.+.++.+ ++... ......+.+++.+.+.|..+.|+++-..-.. -.....+.|+.+.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~---i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPN---IPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhccc---CChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 34566666555554 11110 1133455666666666666666665433221 2334456666666
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHh
Q 048258 134 AFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIK 213 (504)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (504)
|.++.++. .+...|..|.....++|+++-|++.|.+..+ +..++-.|...|+.+...++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66554322 2445666666666666666666666665542 34445555556665555555555544
Q ss_pred cC
Q 048258 214 RG 215 (504)
Q Consensus 214 ~~ 215 (504)
.|
T Consensus 402 ~~ 403 (443)
T PF04053_consen 402 RG 403 (443)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.58 Score=39.53 Aligned_cols=145 Identities=16% Similarity=0.104 Sum_probs=79.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCch
Q 048258 227 MEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEV 306 (504)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (504)
.......|++.+|...|.......+. +...-..++.+|...|+.+.|..++..+..............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34455667777777777777766554 44555667777777777777777777765542221222222233444444444
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC
Q 048258 307 HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-PPNTITYNILIRSLCAIG 374 (504)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 374 (504)
.+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. ..|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444444332 22555555566666677777777766666554311 123334445555554444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.019 Score=33.01 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNI 50 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 50 (504)
+|..+.+.|.+.|++++|+++|+++.+.. +.|+..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 44455555555666666666665555553 334444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.31 Score=35.42 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 434 SALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+..+..+...|+-++-.+++..+... -.+++.....+..+|.+.|+..++.++++++=++|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444455555555555544432 13444455555555555555555555555554444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.24 Score=41.25 Aligned_cols=90 Identities=20% Similarity=0.192 Sum_probs=54.6
Q ss_pred HHccCChhhHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 048258 195 LVTGLDLNETCGILDTFIKRGV--KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 270 (504)
+.+.|++..|...|...++... .-....+..|..+++..|++++|..+|..+.+.-+. .-+..+-.+..+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3445556777766666666531 223455666677777777777777777666654432 123455556666666777
Q ss_pred HHHHHHHHHHHHhC
Q 048258 271 MDRATEICREMRDR 284 (504)
Q Consensus 271 ~~~a~~~~~~~~~~ 284 (504)
.++|...|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766655
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.24 Score=42.33 Aligned_cols=156 Identities=13% Similarity=0.042 Sum_probs=106.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCh
Q 048258 55 ICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER---NVCPNEATVRSLVHGVFRCLDP 131 (504)
Q Consensus 55 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 131 (504)
....|+..+|-..++++.+. ++.|..++.-.=.+|...|+...-...++++... +++....+...+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 44567788887888888765 4667777777777888888888888888887654 2222233444555666778888
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCC---CChhhHHHHHHHHHccCChhhHHHHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYL---PESSTFDYTVTCLVTGLDLNETCGIL 208 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (504)
++|.+.-++..+.++. +.....+..+.+-.+|++.++.+...+-...--. .-.+-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888888777654 5666667777788888888888877665432111 12233444455666778889999888
Q ss_pred HHHH
Q 048258 209 DTFI 212 (504)
Q Consensus 209 ~~~~ 212 (504)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.16 Score=42.31 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C-ChhhHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGY--APNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC-P-NEATVRSLV 122 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 122 (504)
.|+.-+.. .+.|++..|...|....+... .-....+..|..++...|++++|..+|..+.+.-.. | -+..+.-+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35544433 344556666666666655421 011223444556666666666666666666554111 1 123444555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
.+..+.|+.++|...|+++.+..|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 5555666666666666666665544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.3 Score=36.42 Aligned_cols=80 Identities=14% Similarity=0.005 Sum_probs=53.1
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
..-.....+.|++++|.+.|+.+...- .+-...+...++.++.+.+++++|...+++.++..|......|...+.+++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 333445556777777777777777662 123456677788888888888888888888888776544455555555544
Q ss_pred hc
Q 048258 267 KV 268 (504)
Q Consensus 267 ~~ 268 (504)
..
T Consensus 94 ~~ 95 (142)
T PF13512_consen 94 YY 95 (142)
T ss_pred HH
Confidence 43
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.17 Score=36.61 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=64.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcC
Q 048258 368 RSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN---FSYSALIKALIKSG 444 (504)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 444 (504)
.+.+..|+.+.|++.|.+.... .+.....||.-..++.-.|+.++|++-+++.++..-..+. ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566778888888888887765 3456778888888888888888888888888774211121 12333344566778
Q ss_pred ChhHHHHHHHHHHhcCC
Q 048258 445 RFDEAKQTFLSMEQNGC 461 (504)
Q Consensus 445 ~~~~a~~~~~~~~~~~~ 461 (504)
+-+.|+.-|+..-+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888888877763
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.1 Score=38.96 Aligned_cols=164 Identities=10% Similarity=0.082 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048258 326 FTFNSMIDCLCRAHRFE---DALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402 (504)
Q Consensus 326 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (504)
.++..++.+|...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+++.+.+.+|...- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667777787776644 556666666543 23234555566777777888999999999998762 22334455444
Q ss_pred HHH---HccCCHHHHHHHHHHHHhCCCCCCcc-cHHH-HHH---HHHhcCC------hhHHHHHHHHHHh-cCCCCChhh
Q 048258 403 QSF---CRMNKIEKAEKAFFSMLTLGLRPDNF-SYSA-LIK---ALIKSGR------FDEAKQTFLSMEQ-NGCNPDSYT 467 (504)
Q Consensus 403 ~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~---~~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~ 467 (504)
..+ .. .....|...+..++...+.|... .... ++. ...+.++ .+...+++..... .+.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 33456666666666544455443 1111 111 1122222 3333344443322 122223332
Q ss_pred ---HHHH----HHHHHhcCCHHHHHHHHHHHH
Q 048258 468 ---SNLI----LETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 468 ---~~~l----~~~~~~~g~~~~a~~~~~~~~ 492 (504)
...+ +..+.+.++|++|.++++-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2222 345677899999999998665
|
It is also involved in sporulation []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.1 Score=41.81 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEK 416 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 416 (504)
++..+.+..+.+.+..+.+..-+. ++..|..++..+++.+..+...+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~ 757 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYE 757 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHH
Confidence 334444444555555544444322 44455555555555554443333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.6 Score=40.53 Aligned_cols=227 Identities=13% Similarity=0.044 Sum_probs=125.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH----HHhCC-CCCcHHhHHHHHHHHHh
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQ----MEGLG-YAPNVYTYTILIDGFCN 92 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 92 (504)
+....+.+.|+..|.+....- ...-..++..+..+.++.|.+++++..--. ..+.. -..--..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778889998888776431 011233456677788888888776543222 11110 00112345555566655
Q ss_pred cCChhhHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCcchhHHHHHHHHHhcC
Q 048258 93 AKRVAEVFRVLEIMKER-NVCP---NEATVRSLVHGVFRCLDPHKAFELLIRFMER-----EPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 163 (504)
..++.+++.+-..-... |..| -......+..++...+.++++++.|+....- ++.....++-.+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 56666666665554432 1111 1123445667777788888888888877653 2223445677777788888
Q ss_pred CChHHHHHHHHHHhh----CCCCCChh------hHHHHHHHHHccCChhhHHHHHHHHHhc----CCCc-cHHHHHHHHH
Q 048258 164 SMASEAAAILRKMGD----RGYLPESS------TFDYTVTCLVTGLDLNETCGILDTFIKR----GVKP-RFSTYLLLME 228 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~----~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 228 (504)
.+.++|.-+..+..+ -++. |.. ....+.-++...|.+.+|.+..++..+. |-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 888877766555432 1111 111 1222334455566666666665554432 3222 2233445556
Q ss_pred HHHhcCCcHHHHHHHHHHH
Q 048258 229 ALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~ 247 (504)
.|...|+.+.|..-|+++.
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 6666677666666665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.7 Score=35.09 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
..++..+.+.+.+.....+++.+.+.+ +.++...+.++..|++.+ .+...+.++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555566666666666665554 345555666666665442 2233333331 0 1122223344455555
Q ss_pred CChhhHHHHHHHH
Q 048258 94 KRVAEVFRVLEIM 106 (504)
Q Consensus 94 g~~~~a~~~~~~~ 106 (504)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.04 Score=31.66 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
++..+...|.+.|++++|+++|+++.+.. +-|...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 44555666666666666666666666553 234444433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.27 Score=35.63 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=69.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHccCC
Q 048258 334 CLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY---TFNALIQSFCRMNK 410 (504)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 410 (504)
+.+..|+.+.|++.|.+.+.. .+.....||.-..++.-.|+.++|++-+++..+..-.-+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 567889999999999998876 35577889999999999999999999999888752222222 33333445677889
Q ss_pred HHHHHHHHHHHHhCC
Q 048258 411 IEKAEKAFFSMLTLG 425 (504)
Q Consensus 411 ~~~a~~~~~~~~~~~ 425 (504)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999998888876
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.41 Score=44.23 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=64.2
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC 371 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (504)
..+.++..+.+.|-.+.|+.+...- . .-.....+.|+.+.|.++.++. ++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 3455555555566666655544321 1 1122334556666655543332 24456666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 048258 372 AIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQ 451 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 451 (504)
..|+++-|++.|++... +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665442 3444445555666666555555555543 13344444445555555555
Q ss_pred HHH
Q 048258 452 TFL 454 (504)
Q Consensus 452 ~~~ 454 (504)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.2 Score=42.39 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=60.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE-----RNVCPNEATV 118 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 118 (504)
-..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 45667778888888888888888888888775 55777888888888888888888888877765 4677777766
Q ss_pred HHHHHH
Q 048258 119 RSLVHG 124 (504)
Q Consensus 119 ~~l~~~ 124 (504)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 665555
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.45 Score=40.78 Aligned_cols=154 Identities=8% Similarity=0.023 Sum_probs=111.0
Q ss_pred hcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhcCCH
Q 048258 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY----NILIRSLCAIGDV 376 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 376 (504)
...|+..+|-..++++.+. .+.|...+...-.+|...|+.+.-...++++... ..++...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467788888888888775 4567777887788899999999988888888754 23344333 3444556688999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 048258 377 ARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL---GLRPDNFSYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
++|++.-++..+.+ +.|...-.++...+...|++.++.++..+-... +.-.-...|-...-.++..+.++.|.++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988865 556777778888888899999999986554331 11111334555555677789999999999
Q ss_pred HHHH
Q 048258 454 LSME 457 (504)
Q Consensus 454 ~~~~ 457 (504)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.85 Score=35.11 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=32.9
Q ss_pred HHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 195 LVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
+...|.+++.....+.+...+.+.....-..|.-+-.+.|++..|...|.++...
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 3445666666665655555554445555556666666667777777776666553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.4 Score=40.16 Aligned_cols=79 Identities=19% Similarity=0.119 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHH
Q 048258 342 EDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFS 420 (504)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 420 (504)
.+|.+.-+...+.+ +.|+.....+..+....++++.|...|++.... .|| ...|........-.|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555543 335555555555555555566666666666554 233 33444444444555666666666666
Q ss_pred HHh
Q 048258 421 MLT 423 (504)
Q Consensus 421 ~~~ 423 (504)
..+
T Consensus 398 alr 400 (458)
T PRK11906 398 SLQ 400 (458)
T ss_pred Hhc
Confidence 555
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.25 Score=41.11 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc----------------CChhhHHH
Q 048258 43 PDRFTYNILIHGICR-----IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA----------------KRVAEVFR 101 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~ 101 (504)
.|-.+|...+..+.. .+.++-....+..|.+-|+..|..+|+.|+..+=+- .+-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344445444444432 234444555555566666666666666665543211 23345677
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 048258 102 VLEIMKERNVCPNEATVRSLVHGVFRCLDP 131 (504)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (504)
++++|...|+-||..+-..++.++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 777777777777777777777777666543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.8 Score=40.47 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFC 406 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (504)
+.+--+.-+...|+..+|.++-.+.. -||...|-.=+.+++..+++++-+++-+... ++.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44455556677888888887777664 4688888888899999999888766544432 3555777888999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048258 407 RMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 407 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
+.|+.++|.+++.+... +.-...+|.+.|++.+|.++.-+-
T Consensus 756 ~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 99999999998755432 115678899999999998875443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.4 Score=36.98 Aligned_cols=221 Identities=18% Similarity=0.131 Sum_probs=97.2
Q ss_pred CCcHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCchHHHHH
Q 048258 234 GRDVEGDRYLNHVFKDRLVS-NVNSYNMVIDCFCKVNMMDRATEICREMRDR-DIAPNLVTFNTLISGHCKDAEVHKTRE 311 (504)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (504)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444444332221 2344445555555556666666555555431 112233444444445555555555555
Q ss_pred HHHHHHHCCCCccHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 312 LLVMLLECGFKPDKFTFNSMID-CLCRAHRFEDALDCLSEMVEWGV--PPNTITYNILIRSLCAIGDVARSLRLFQKMQA 388 (504)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (504)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 555555432222 111111111 45555556666655555543211 01122222233334445555555555555554
Q ss_pred CCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 389 DRISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 389 ~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
.. .. ....+..+...+...++++.+...+...... .|+ ...+......+...+..+.+...+.+...
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 31 11 2344444555555555555555555555543 222 22222333333344445555555555544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.92 Score=34.43 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
...++..+...+.+.....+++.+...+ ..+...++.++..|++.++ ++..+.+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 3567777777788899999999988876 4677788899988887643 344444432 1 233444556667777
Q ss_pred cCChHHHHHHHHHH
Q 048258 128 CLDPHKAFELLIRF 141 (504)
Q Consensus 128 ~~~~~~a~~~~~~~ 141 (504)
.+-++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 77776666666554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.4 Score=36.56 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=27.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC
Q 048258 265 FCKVNMMDRATEICREMRDRDI--APNLVTFNTLISGHCKDAEVHKTRELLVMLLEC 319 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (504)
-.+.|++++|.+.|+.+....+ +-...+.-.++.++.+.++++.|....++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455566666666665554421 112233334444555566666666666555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.29 E-value=3.1 Score=40.40 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=69.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKP---DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
++.+.+.+.+++|...-+..... .| ....+...+..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 56778889999998887765543 33 3556778888888999999999988888853 666777777766666
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
++... ++.-+.......++.+|..++..+..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 65443 33333333333455667777666665
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.6 Score=38.70 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHH
Q 048258 326 FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVP-PNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY-TFNALI 402 (504)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 402 (504)
..-..+..++.+.|+.++|++.++++.+.... ........|+.++...+.+.++..++.+..+...+.+.. .|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33345666677889999999999999875322 233466788899999999999999998876543333332 555544
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.3 Score=40.73 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=66.5
Q ss_pred CCcHHhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----------------CChHHHH
Q 048258 77 APNVYTYTILIDGFCN-----AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC----------------LDPHKAF 135 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 135 (504)
+.|-.+|...+..+.. .+.++=....+..|.+-|+..|..+|..|+..+-+. .+-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455566666655543 245555666677777778888888888777664331 2334578
Q ss_pred HHHHHHHhcCCCcchhHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 048258 136 ELLIRFMEREPLTQKLVCNTLLYRLSNNSMA-SEAAAILRKM 176 (504)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 176 (504)
.++++|...|.-|+..+-..++.++.+.+.. .+..+.+-.|
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 8888888888888888888888888887764 3334444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.07 E-value=4.7 Score=41.31 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
....++.++...|..+.|.++-+..
T Consensus 1186 E~~~Ll~~l~~~g~~eqa~~Lq~~f 1210 (1265)
T KOG1920|consen 1186 ELKRLLEVLVTFGMDEQARALQKAF 1210 (1265)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4456777777777777776654443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.4 Score=36.75 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=10.4
Q ss_pred HHhcCChhHHHHHHHHH
Q 048258 440 LIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 440 ~~~~g~~~~a~~~~~~~ 456 (504)
+.+.+++++|.++|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566666666666644
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.75 E-value=3.4 Score=38.04 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-chhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 116 ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT-QKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
.+-..+..++.+.|+.++|.+.++++.+..|.. ...+...|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344456666667788888888888877665442 344666777778888888888887777644
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.7 Score=37.92 Aligned_cols=55 Identities=11% Similarity=-0.022 Sum_probs=25.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRD-----IAPNLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
+..++...+.++++++.|+...... .......+..+...|.+..|+++|.-...+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence 4445555555555555555443321 111223445555555555555555544433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.1 Score=34.51 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
.+|.-+...+...|+.++|..+|+......
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 456666666777777777777776666543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.2 Score=34.34 Aligned_cols=183 Identities=18% Similarity=0.087 Sum_probs=97.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 048258 264 CFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFED 343 (504)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 343 (504)
.|-..|-+.-|..=|.+.....+. -+..||.+.--+...|+++.|.+.|+...+.++.-+-...|.=+. +.-.|++.-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 355566666666666666554322 346677777777778888888888888777654433333333332 334577777
Q ss_pred HHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 048258 344 ALDCLSEMVEWGVPPNTI--TYNILIRSLCAIGDVARSLRL-FQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420 (504)
Q Consensus 344 a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 420 (504)
|.+-+...-+.+ +.|+. .|-.+.. ..-++.+|..- .++..+ .|..-|...+-.|. .|++. ...++++
T Consensus 152 Aq~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLMER 221 (297)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHHH
Confidence 777777666653 22322 2222221 22355555443 333333 24344433333222 12221 1222333
Q ss_pred HHhCCCCCC-------cccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 421 MLTLGLRPD-------NFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 421 ~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+..- -..+ ..+|-.+..-+...|+.++|..+|+-.+..
T Consensus 222 ~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 222 LKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3321 1111 345666777777888888888888877764
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.14 Score=27.78 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
++..++..|.+.|++++|.+++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888888888888888888553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.79 Score=38.97 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=65.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCcchhHHH
Q 048258 80 VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME-----REPLTQKLVCN 154 (504)
Q Consensus 80 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 154 (504)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.. .++.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4578888999999999999999999999875 34778999999999999999999999998876 36666666666
Q ss_pred HHHHH
Q 048258 155 TLLYR 159 (504)
Q Consensus 155 ~l~~~ 159 (504)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.2 Score=35.29 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPD--IYTFNALIQSFCRMNKIEKAEKAFFSML 422 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 422 (504)
.+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.++......+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544322222 1233444444455555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.3 Score=33.06 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhh
Q 048258 66 RLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAE 98 (504)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 98 (504)
+++..+.+.+++|+...+..+++.+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334444445555555555555655555555433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=2.8 Score=33.24 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=22.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 439 ALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.....|.+++|...++.....+. .......-++++...|+.++|+.-|+...+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444444444444444333211 1222333344444444445554444444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=3.6 Score=34.38 Aligned_cols=117 Identities=21% Similarity=0.098 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhCCCC-CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHH
Q 048258 59 GVVDEALRLVKQMEGLGYA-PNVYTYTILIDGFCNAKRVAEVFRVLEIMKER-NVCPNEATVRSLVHGVFRCLDPHKAFE 136 (504)
Q Consensus 59 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (504)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444555555555443211 02344555555556666666666666655532 112233444445555555555666666
Q ss_pred HHHHHHhcCCCcchhHHHHHHH-HHhcCCChHHHHHHHHHH
Q 048258 137 LLIRFMEREPLTQKLVCNTLLY-RLSNNSMASEAAAILRKM 176 (504)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~ 176 (504)
.+.......+.. ......... .+...|+++.+...+.+.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666555543332 111111111 445555555555555555
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.8 Score=34.36 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--VYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
..+..+...|.+.|+.+.|++.|.++......+. ...+..+|+.....+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4466677777777777777777777766533322 334556667777777777777776666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.11 Score=27.81 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=18.3
Q ss_pred HHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048258 34 QQMSVDQCKPDRFTYNILIHGICRIGVVDEAL 65 (504)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 65 (504)
++.++.+ |.+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 456666666666666666666664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.18 Score=27.31 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048258 48 YNILIHGICRIGVVDEALRLVKQ 70 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~ 70 (504)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.7 Score=32.49 Aligned_cols=122 Identities=8% Similarity=0.009 Sum_probs=51.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh-H--HHHHHHHHhcCChH
Q 048258 57 RIGVVDEALRLVKQMEGLGYAPNVY-TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEAT-V--RSLVHGVFRCLDPH 132 (504)
Q Consensus 57 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~--~~l~~~~~~~~~~~ 132 (504)
+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|...- . ..-...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555544321111 111112223344555555555555544322222210 0 00111233445555
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 133 KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
......+.+...+.+.....-..|..+-.+.|++..|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555554444443333333444444455555555555555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.46 E-value=2.2 Score=31.22 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=24.7
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
...+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33344444444444444444444432 23444444444555555555555544444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.19 Score=26.82 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=16.6
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRAT 275 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (504)
+.++..|. +..+|+.+...+...|++++|+
T Consensus 4 kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 33444433 5566666666666666666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.83 E-value=13 Score=38.37 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=58.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHccCC
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY--TFNALIQSFCRMNK 410 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 410 (504)
..+.+...+++|.-.|+..-+. .-.+.+|..+|+|.+|..+..++... .+.. +-..|+..+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 3334455555555555544221 22455666667777776666655431 1211 22456666677777
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 411 IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 411 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
+-+|-++..+.... | ...+..|++...+++|..+.....
T Consensus 1015 h~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred chhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 77777776665541 1 234455666677777777665544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.67 E-value=1 Score=30.71 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 410 KIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
+.=++.+-++.+....+.|++....+.+.+|.+.+++..|+++++-...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345555556666666667777777777777777777777777776653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.55 E-value=6.7 Score=34.25 Aligned_cols=127 Identities=9% Similarity=0.222 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhc--CC----chHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCC---
Q 048258 273 RATEICREMRDRDIAPNLVTFNTLISGHCK--DA----EVHKTRELLVMLLECGF---KPDKFTFNSMIDCLCRAHR--- 340 (504)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~--- 340 (504)
+.+.+++.+.+.|+.-+..++-+....... .. ....+..+|+.|.+..+ .++-.++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555566666555444444332222211 11 23455556666655432 1223333333322 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048258 341 -FEDALDCLSEMVEWGVPPNT--ITYNILIRSLCAIGD--VARSLRLFQKMQADRISPDIYTFNAL 401 (504)
Q Consensus 341 -~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (504)
.+.+..+|+.+.+.|+..+. ...+.++..+....+ ..++.++++.+.+.++++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23444555555554443222 222222222211111 23455555555555555555544443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.44 E-value=8.1 Score=34.96 Aligned_cols=181 Identities=15% Similarity=0.079 Sum_probs=97.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCcHHhHHHHHHHHH
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY----APNVYTYTILIDGFC 91 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 91 (504)
..++.-+.|+|+...+........ .++...+..+... ..++++++....+.+...-. ......|......+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356778889999966665555533 3455555555544 78999988888887754310 001122222222222
Q ss_pred hc---CChhhHHHHHHHH--------------HHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCcch
Q 048258 92 NA---KRVAEVFRVLEIM--------------KER--NVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME--REPLTQK 150 (504)
Q Consensus 92 ~~---g~~~~a~~~~~~~--------------~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 150 (504)
+. .+++++.++.... ..+ +..++..++..++.. -.-+.. ..+....
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~-------------R~~~l~~~~~~~~~~ 146 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSL-------------RRLVLSLILLPEELA 146 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHH-------------HHHHHhcccchhHHH
Confidence 22 2333333333111 000 112222222222211 111111 1123345
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHccCChhhHHHHHHHHHh
Q 048258 151 LVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP---ESSTFDYTVTCLVTGLDLNETCGILDTFIK 213 (504)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (504)
.+|..++..+.+.|.++.|...+..+...+..+ .+.....-++..-..|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 577778888888888888888888877643222 334455556667777888888888877776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.40 E-value=7 Score=34.13 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHhcCCc--
Q 048258 237 VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK--V----NMMDRATEICREMRDRDI---APNLVTFNTLISGHCKDAE-- 305 (504)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 305 (504)
.+...+++.+.+.+...+..+|-+....... . ....++..+|+.|++..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445567777777777666555443322222 1 235678899999988753 2344555555543 3333
Q ss_pred --hHHHHHHHHHHHHCCCCccH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048258 306 --VHKTRELLVMLLECGFKPDK--FTFNSMIDCLCRAHR--FEDALDCLSEMVEWGVPPNTITYNILIRSL 370 (504)
Q Consensus 306 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (504)
.+.+..+|+.+.+.|+..+. .....++..+....+ ..++..+++.+.+.++++....|..+.-..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35667777888776765432 344444443332222 458889999999999988887776555443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.20 E-value=9.6 Score=35.23 Aligned_cols=66 Identities=11% Similarity=-0.044 Sum_probs=32.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHhC
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHG-ICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 74 (504)
.|+..|...+..+-+.+.+.+.-.+|.+|...+ +.++..|-.-... |-.+-+++.|..+|....+.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 355556555555555555666666666655544 3333333332222 22223355555555555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.98 Score=31.16 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 413 KAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 413 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555555566666666666666666666666666666666543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.03 E-value=2.9 Score=28.96 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 13 YNAVIDALVKSNS--IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 13 ~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
+..--..+....+ .-+..+-+..+...++-|.+.+..+.+++|.+.+++..|+++|+-++.+
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333344444333 2245555555555555666666666666666666666666666666543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.90 E-value=4.9 Score=31.29 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=60.0
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 346 DCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
++++.+.+.+++|+...+..++..+.+.|.+..-..+ ...++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444444555666666666666666666654433332 22333333333322221111 1222333333333321
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 426 LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+ ...+..++..+...|++-+|.++.+..... +......++.+-.+.++..--..+++-+.+.
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 012445555666666666666666554221 1112233455555555555544455444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.6 Score=24.61 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.+..++.++...|++++|++.++++.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.70 E-value=4.9 Score=30.87 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=6.9
Q ss_pred hcCCChHHHHHHHHHH
Q 048258 161 SNNSMASEAAAILRKM 176 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~ 176 (504)
...|++.+|..+|+++
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3344444444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.63 E-value=5 Score=30.83 Aligned_cols=53 Identities=21% Similarity=0.077 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRF-TYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
-.+.++.+++..+++-+.-.. |... .-..-...+...|+|.+|+.+|+++...
T Consensus 20 al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344556666666666555442 2222 2122223345566666666666666554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.50 E-value=15 Score=36.06 Aligned_cols=102 Identities=17% Similarity=0.029 Sum_probs=67.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 048258 52 IHGICRIGVVDEALRLVKQMEGLGYAP---NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC 128 (504)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (504)
+..+.+.+.+++|+.+.+..... .| -.......|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 66777889999999988776543 33 3446777788888889999999998888754 455555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc
Q 048258 129 LDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN 162 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (504)
++...... -+....+.....+|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 55433222 22223333566678777777766
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.74 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+|..++.++...|++++|...++++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4455555666666666666666665553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.27 E-value=2.5 Score=33.56 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=67.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHH
Q 048258 367 IRSLCAIGDVARSLRLFQKMQADRISPD-----IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKAL 440 (504)
Q Consensus 367 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 440 (504)
..-+...|++++|..-|..+++. +++. ...|..-..++.+.+.++.|++--.+.++.+ |+ ...+..-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 34567889999999999999886 2332 2344444566778899999999888888854 32 22333345567
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCChh
Q 048258 441 IKSGRFDEAKQTFLSMEQNGCNPDSY 466 (504)
Q Consensus 441 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 466 (504)
-+...+++|+.-|+++.+. .|...
T Consensus 179 ek~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh--CcchH
Confidence 8888999999999999985 45443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.06 E-value=31 Score=38.92 Aligned_cols=323 Identities=11% Similarity=0.024 Sum_probs=166.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQC-KPDRFTYNILI-HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
..+.++-.+++.+.+|+..+++-..... +-....+-.++ ..|...+++|....+...-.. .|+ .+.- |....
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~q-il~~e 1460 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQQ-ILEHE 1460 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHHH-HHHHH
Confidence 3667788899999999999998421110 11223333444 488899999988887775222 222 2333 33456
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHH
Q 048258 92 NAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAA 171 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (504)
..|++..|...|+.+.+.+. +....+..++......|.+....-..+.......+.....++.=+.+-.+.++++....
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 78999999999999998742 33556777777777778888777766665554333222223333344567777777666
Q ss_pred HHHHHhhCCCCCChhhHHHH--HHHHHcc--CChhhHHHHHHHHHhcCCCc---------cHHHHHHHHHHHHhcCCcHH
Q 048258 172 ILRKMGDRGYLPESSTFDYT--VTCLVTG--LDLNETCGILDTFIKRGVKP---------RFSTYLLLMEALYKAGRDVE 238 (504)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 238 (504)
.+. .. +..+|... .....+. .|.-.-.+.++.+.+.-+.| -...|..++..+.-..-..
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~- 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN- 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH-
Confidence 655 11 23333222 2222222 22222222333222221111 0122333333222111100
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhC----CCC-CChhhHHHHHHHHhcCCchHHHHH
Q 048258 239 GDRYLNHVF-KDRLVSNVNSYNMVIDCFCKVNMMDRATEICRE-MRDR----DIA-PNLVTFNTLISGHCKDAEVHKTRE 311 (504)
Q Consensus 239 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 311 (504)
-.+...... ......+..-|..-+..-....+..+-+--+++ +... +.. --..+|....+.....|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 011111110 000111111122222111111111111111111 1111 111 124567777788888999999988
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048258 312 LLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW 354 (504)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (504)
.+-...+.+ -+..+-..++.....|+...|+.++++..+.
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 877776654 2344556677788899999999999988854
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.98 E-value=13 Score=34.49 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=105.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
+.|.....+++..+..+..+.-...+..+|...| .+-..|..++++|... ..++-..+++++.+..+ +..+...-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 3455556667777777777777778888887764 4666777888888777 45777778888777654 34444433
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHhcCCChHHHHHHHHHHhhC-CCCCChhhHHHHHHHH
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPL-----TQKLVCNTLLYRLSNNSMASEAAAILRKMGDR-GYLPESSTFDYTVTCL 195 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 195 (504)
+..+...++...+...|.++..+-.+ .-..+|..+... -..+.+..+.+..++... |..--...+..+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33444447777777777776654322 112244444421 133455555555555432 2222233444445666
Q ss_pred HccCChhhHHHHHHHHHhcCCCccHHHHHHHHHH
Q 048258 196 VTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEA 229 (504)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (504)
....++.+|++++..+.+.. ..|..+-..++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 66777777777777777664 3344444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.87 Score=24.03 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (504)
|..+..+|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.30 E-value=3.3 Score=35.45 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=28.2
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 95 RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
++++++.++..-.+-|+-||..++..++..+.+.+++.+|.++...++..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44455555555555555566666666666666666666555555554443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.98 E-value=5.6 Score=34.17 Aligned_cols=103 Identities=15% Similarity=0.285 Sum_probs=65.5
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc
Q 048258 355 GVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD---RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF 431 (504)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 431 (504)
|.+.+..+...++..-....+++.++..+-++... ...|+... ..+++. +..-++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 33444555555555555566777777777666543 11122111 122332 33456678888877777888888888
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+++.+++.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877776654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.95 E-value=1 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=10.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 048258 120 SLVHGVFRCLDPHKAFELLIRFME 143 (504)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~ 143 (504)
.+...+...|++++|.+.|++...
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.94 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 466 YTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.++..++.+|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667788888888888888888888765
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.72 E-value=4.5 Score=32.41 Aligned_cols=75 Identities=19% Similarity=0.087 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChHHHH
Q 048258 60 VVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER---NVCPNEATVRSLVHGVFRCLDPHKAF 135 (504)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (504)
.-+.|++.|-.+...+.--++.....|...|. ..+.++++.++-...+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45678888999988875556666666666554 67889999999888764 23678999999999999999999885
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.47 E-value=22 Score=34.64 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHHhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCcHHhHHHHHHHHHhc
Q 048258 26 IDLAYLKFQQMSVDQCKPDRFTYNILIHG-----ICRIGVVDEALRLVKQMEG-------LGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 93 (504)
...|...++...+.| +......+... +....+.+.|+.+|+.+.. .| ++.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467788888877765 33333322222 3345678888888888766 44 233455566666653
Q ss_pred C-----ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHhcCC
Q 048258 94 K-----RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR-CLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 94 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~ 146 (504)
. +.+.|..++....+.|. |+.......+..... ..+...|.++|......|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 2 45667777777777653 333332222221111 1345677777777666543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.41 E-value=13 Score=35.30 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=90.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhH
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEV 99 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 99 (504)
..-.|+++.|..++..+.+ ..-+.+.+.+-++|..++|+++ .+|...- .....+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHH
Confidence 3446777777776655542 2335566667777777777654 2232221 1233566788877
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhC
Q 048258 100 FRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (504)
.++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.
T Consensus 657 ~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 77665543 556688888888888888888888876543 334555566666655444444444443
Q ss_pred CCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 048258 180 GYLPESSTFDYTVTCLVTGLDLNETCGILDTF 211 (504)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (504)
|.. |. ..-++...|+++++.+++..-
T Consensus 722 g~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 322 22 233455677888877776544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.38 E-value=3.1 Score=36.11 Aligned_cols=91 Identities=11% Similarity=-0.068 Sum_probs=36.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 048258 54 GICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHK 133 (504)
Q Consensus 54 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (504)
-|.++|.+++|+..|....... +.|++++..-..+|.+..++..|..-.......+- .-...|..-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence 3444455555555544444331 11444444444444444444444444443332210 011122333333333444444
Q ss_pred HHHHHHHHHhcCC
Q 048258 134 AFELLIRFMEREP 146 (504)
Q Consensus 134 a~~~~~~~~~~~~ 146 (504)
|.+-++.++...|
T Consensus 184 AKkD~E~vL~LEP 196 (536)
T KOG4648|consen 184 AKKDCETVLALEP 196 (536)
T ss_pred HHHhHHHHHhhCc
Confidence 4444444444433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.27 E-value=18 Score=33.34 Aligned_cols=126 Identities=9% Similarity=0.073 Sum_probs=86.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCch
Q 048258 227 MEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEV 306 (504)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (504)
+.-....|+...|.+-+..+++..+. ++.........+...|+++.+...+...... +.....+...++....+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33444567777776655555544332 3334444445567889999999988776543 334567888899999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048258 307 HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWG 355 (504)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (504)
+.|..+-+.|....+. ++.............|-++++...|++....+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999998876654 44444444434455677899999999887654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.93 Score=23.58 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 470 LILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 470 ~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.++.++.+.|++++|.+.++++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455555556666666666655543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.08 E-value=25 Score=34.76 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 50 ILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 50 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.+|-.|.+.|.+++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4566778888888888888555433 233445566677777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.6 Score=37.67 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=58.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADRISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSG 444 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (504)
-..-|.++|.+++|++.|.+.... .| +..++..-..+|.+..++..|..--..++..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 356677888888888888877764 34 77777777778888888887776666655432 111222333333333345
Q ss_pred ChhHHHHHHHHHHhcCCCCCh
Q 048258 445 RFDEAKQTFLSMEQNGCNPDS 465 (504)
Q Consensus 445 ~~~~a~~~~~~~~~~~~~~~~ 465 (504)
...+|.+-++..+. +.|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 66666666666665 35553
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.00 E-value=8.6 Score=32.75 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFM 142 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (504)
+...+.|..+|.+.+|.++.++..+.+ +.+...+..++..+...||--.+.+.++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334455566666666666666666553 3455556666666666666555555555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.2 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=13.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSML 422 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 422 (504)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.76 E-value=3.6 Score=32.20 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHH
Q 048258 374 GDVARSLRLFQKMQ 387 (504)
Q Consensus 374 g~~~~a~~~~~~~~ 387 (504)
....++.+++++..
T Consensus 42 k~g~es~~miedAi 55 (186)
T PF06552_consen 42 KQGPESKKMIEDAI 55 (186)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHH
Confidence 33344555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.54 E-value=4.3 Score=32.82 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG--YAPNVYTYTILIDG 89 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 89 (504)
+.+..++.+.+.+...+|+...+.-++.. +.|...-..+++.++-.|+|++|..-++..-+.. ..+-...|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556778888888888888887777664 5566666778888888888888887777665542 22334556666654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.44 E-value=6.9 Score=30.72 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhCCCCCCHHhHHHHHHHH---HhcCCH-------HHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcC
Q 048258 26 IDLAYLKFQQMSVDQCKPDRFTYNILIHGI---CRIGVV-------DEALRLVKQMEGLGYAPN-VYTYTILIDGFCNAK 94 (504)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~-------~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 94 (504)
|+.|++.++.....+ |.|...++.-..++ ++..+. ++|+.-|++.... .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 566777776654444 55666554443333 333443 3444555555554 444 456777777776543
Q ss_pred C-----------hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 95 R-----------VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 95 ~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
. +++|...|++.... .|+..+|+.-+.... +|-++..++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 45556666666655 677777777666543 345555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.41 E-value=11 Score=30.00 Aligned_cols=85 Identities=14% Similarity=0.030 Sum_probs=40.0
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhH-----HHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATV-----RSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
+...+++++|...++..... |....+ ..|.+.....|.+++|+..++.....+. .......-...+...|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 44555666666555555432 111222 2234445555666666655555433211 1111222234555566
Q ss_pred ChHHHHHHHHHHhhC
Q 048258 165 MASEAAAILRKMGDR 179 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~ 179 (504)
+-++|..-|.+.+..
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 666666666665554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.36 E-value=9.9 Score=30.56 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=61.0
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCcchhHHHHHHHHHhcCCCh
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMERE---PLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 166 (504)
+.+.|+ +.|.+.|-.+...+.--++.....+...| ...|.+++..++.+.++.. ...++..+.+|+..+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455566 78888898888776555555555555555 4789999999999888753 356888999999999999999
Q ss_pred HHHH
Q 048258 167 SEAA 170 (504)
Q Consensus 167 ~~a~ 170 (504)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.34 E-value=21 Score=33.04 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=63.4
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CC--CC---CHHhHHHHHHHHHccCCHHHHHHHHHHHHh-------CCCCCCc----
Q 048258 370 LCAIGDVARSLRLFQKMQAD---RI--SP---DIYTFNALIQSFCRMNKIEKAEKAFFSMLT-------LGLRPDN---- 430 (504)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~---~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~---- 430 (504)
+...|++.+|.+++...--. |. .| +...||.|...+.+.|.+..+..+|.++.+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 34467777777776544211 21 11 122335666556666666666666665553 3544432
Q ss_pred -------ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 048258 431 -------FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQ 478 (504)
Q Consensus 431 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (504)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|-.+..+|...
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 1232 233567788888888888888764 456778888888887653
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.30 E-value=28 Score=34.41 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc
Q 048258 117 TVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN 162 (504)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (504)
..-.++-.+.++|++++|.++........ ......+...+..|..
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYAS 157 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHh
Confidence 33455556667777777777663333221 1233344455555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.28 E-value=5.5 Score=31.76 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=40.3
Q ss_pred HHccCChhhHHHHHHHHHhcCCCc----cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048258 195 LVTGLDLNETCGILDTFIKRGVKP----RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (504)
+.+.|++++|..-|...+..-... ....|..-..++.+.+.++.|+.-..+.+..++. .......-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 334455555555555544431111 1122333344445555555555555555444332 22222233344555555
Q ss_pred HHHHHHHHHHHHhC
Q 048258 271 MDRATEICREMRDR 284 (504)
Q Consensus 271 ~~~a~~~~~~~~~~ 284 (504)
++.|++=|+++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.7 Score=22.83 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
++..++..+...|++++|.+.+++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667778888888888888888887764
|
... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.03 E-value=27 Score=33.98 Aligned_cols=181 Identities=12% Similarity=0.063 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhcCCCcchhHH-HHHHHH-HhcCCChHHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHccC--
Q 048258 131 PHKAFELLIRFMEREPLTQKLVC-NTLLYR-LSNNSMASEAAAILRKMGD-------RGYLPESSTFDYTVTCLVTGL-- 199 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 199 (504)
...|...++...+.+........ .....+ +....+.+.|..+|+.... .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776665433111111 111222 4456677788887777755 33 2334445555555532
Q ss_pred ---ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh-cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 048258 200 ---DLNETCGILDTFIKRGVKPRFSTYLLLMEALYK-AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK----VNMM 271 (504)
Q Consensus 200 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 271 (504)
+...|..++.+....| .|+.......+..... ..+...|.++|..+.+.|. ...+-.+..+|.. ..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCH
Confidence 4556777777777665 2333332222222222 1245667777777766652 2333333333321 2356
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC
Q 048258 272 DRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG 320 (504)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 320 (504)
+.|..++++..+.| .|....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 67777777766665 2221112222223333 55555555555555544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.91 E-value=1.1 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=11.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
+..++.+.|++++|.+.|++++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 334444445555555555555444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.80 E-value=10 Score=28.74 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=34.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 371 CAIGDVARSLRLFQKMQADRISPDI---YTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
...++.+++..++..+.-. .|+. .++... .+...|++++|..+|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 3467888888888887764 3432 233333 3567788888888888887753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.54 E-value=57 Score=37.10 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 431 FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.+|-.........|.++.|...+-.+.+.+ -+.++...++-+...|+...|..+++.-.+.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456666666666777777776665555543 2334455566666777777777777776654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.10 E-value=33 Score=33.96 Aligned_cols=192 Identities=12% Similarity=0.067 Sum_probs=93.7
Q ss_pred hcCCchHHHHHHHHHHHHCCC-Ccc-----HHHHHHHHHH--HHhcCCHHHHHHHHH--------HHHHCCCCCChhhHH
Q 048258 301 CKDAEVHKTRELLVMLLECGF-KPD-----KFTFNSMIDC--LCRAHRFEDALDCLS--------EMVEWGVPPNTITYN 364 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~~--~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 364 (504)
+-.+++..+...++.+....- .|+ ...+..++.+ +-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889889999888875311 111 2233333333 345699999999998 444444444444333
Q ss_pred HH--HHHHHh--cCCHHH--HHHHHHHHHhC-CCCC--CHHhHHHH-HHHHHccC--CHHHHHHHHHHHHhCC--CCCCc
Q 048258 365 IL--IRSLCA--IGDVAR--SLRLFQKMQAD-RISP--DIYTFNAL-IQSFCRMN--KIEKAEKAFFSMLTLG--LRPDN 430 (504)
Q Consensus 365 ~l--~~~~~~--~g~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g--~~~~a~~~~~~~~~~~--~~~~~ 430 (504)
.+ +..+.. ..+..+ +.++++.+... .-.| +..++..+ +.++.... ...++...+.+..+.- -..+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 112222 222333 66777766542 1122 22233333 33332221 2235555444333211 11121
Q ss_pred ----ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CC--ChhhHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 431 ----FSYSALIKALIKSGRFDEAKQTFLSMEQNGC-NP--DSYTSN-----LILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 431 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.+++.+...+. .|+..+..+.........- .| ....|. .+...+...|+.++|........+
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 12333333333 6777776665554432111 22 333453 334457778999999998877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.10 E-value=23 Score=32.04 Aligned_cols=192 Identities=11% Similarity=0.017 Sum_probs=91.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC---CC-CChhhHHHHHHHHH
Q 048258 51 LIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN---VC-PNEATVRSLVHGVF 126 (504)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~l~~~~~ 126 (504)
...+..+.|+|+...+........ .++...+.++... +.++++++...++.+...- +. .....+........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356777889999966666665543 3455556655533 7889999888888776531 00 01112222222222
Q ss_pred hcCChHHHHHHHHHHHhcCCC-cc----hhHHHHHHHHHhcCCChHH---HHHHHHHHhh--CCCCCChhhHHHHHHHHH
Q 048258 127 RCLDPHKAFELLIRFMEREPL-TQ----KLVCNTLLYRLSNNSMASE---AAAILRKMGD--RGYLPESSTFDYTVTCLV 196 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 196 (504)
+...+.+..++.+-....... .. ...|..-+... .++++. .+.+=..+.. ........++..++..+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 222222222222211111000 00 00111111110 111111 1111111111 111223456667777777
Q ss_pred ccCChhhHHHHHHHHHhcCCCc---cHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 048258 197 TGLDLNETCGILDTFIKRGVKP---RFSTYLLLMEALYKAGRDVEGDRYLNHVFK 248 (504)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (504)
+.|.++.|...+..+...+... .+.....-+......|+..+|...++....
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776643211 344555556666677777777777766665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.04 E-value=34 Score=33.98 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
.+...|....|...+..+... .+......+.......|.++.++....
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 344556667777666666653 233334444444455666666655443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.95 E-value=1.3 Score=21.77 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 048258 15 AVIDALVKSNSIDLAYLKFQ 34 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~ 34 (504)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.5 Score=25.03 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 470 LILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 470 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
.+..+|...|+.+.|+++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777766543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.81 E-value=35 Score=33.85 Aligned_cols=429 Identities=11% Similarity=0.042 Sum_probs=206.8
Q ss_pred HHHHHHHHhhh-CCCCCCHH--hHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCcHH-----hHHHHHHHHHhcCChhh
Q 048258 28 LAYLKFQQMSV-DQCKPDRF--TYNILIHGIC-RIGVVDEALRLVKQMEGLGYAPNVY-----TYTILIDGFCNAKRVAE 98 (504)
Q Consensus 28 ~a~~~~~~~~~-~~~~~~~~--~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 98 (504)
.|++.++-+.+ ..++|..+ ++-.+...+. ...+++.|...+++....--.++-. ....+++.+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555666653 33344333 3455566655 6788999999999875442222211 2334566666666555
Q ss_pred HHHHHHHHHHcC----CCCChhhHHHH-HHHHHhcCChHHHHHHHHHHHhcC---CCcchhHHHHHHHH--HhcCCChHH
Q 048258 99 VFRVLEIMKERN----VCPNEATVRSL-VHGVFRCLDPHKAFELLIRFMERE---PLTQKLVCNTLLYR--LSNNSMASE 168 (504)
Q Consensus 99 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~--~~~~~~~~~ 168 (504)
|.+.+++..+.- ..+-...+..+ +..+...++...|.+.++.+.... ..+...++-.++.+ ..+.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888776541 11112233333 223333478998999888877643 22233333333333 234565666
Q ss_pred HHHHHHHHhhCC---------CCCChhhHHHHHHHH--HccCChhhHHHHHHHHHhc---C-CC----------------
Q 048258 169 AAAILRKMGDRG---------YLPESSTFDYTVTCL--VTGLDLNETCGILDTFIKR---G-VK---------------- 217 (504)
Q Consensus 169 a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~---~-~~---------------- 217 (504)
+.+.++.+.... ..|...+|..++..+ ...|++..+.+.++.+.+. . -.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 766666653211 123445566665544 4567766666655544321 0 00
Q ss_pred ----------cc---------HHHHHHHH--HHHHhcCCcHHHHHHHHHHHhC--------CCCC--CH------HHHHH
Q 048258 218 ----------PR---------FSTYLLLM--EALYKAGRDVEGDRYLNHVFKD--------RLVS--NV------NSYNM 260 (504)
Q Consensus 218 ----------~~---------~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~--------~~~~--~~------~~~~~ 260 (504)
+. ...+..++ -.....+..+.+.+++++..+. ...+ +. ..|..
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~ 357 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR 357 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence 00 01111111 2223344444555555444321 1111 11 11211
Q ss_pred HHH---------HHHhcCCHHHHHHHHHHHHhCCC-CCC-------hhhHHHHHHHHhcCCchHHHHHHHH--------H
Q 048258 261 VID---------CFCKVNMMDRATEICREMRDRDI-APN-------LVTFNTLISGHCKDAEVHKTRELLV--------M 315 (504)
Q Consensus 261 l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 315 (504)
.+. ..+-.+++..|...++.+.+... .|+ +..+....-.+...|+.+.|...|. .
T Consensus 358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~ 437 (608)
T PF10345_consen 358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA 437 (608)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh
Confidence 111 22346889999999998876421 111 1222222233445799999999997 4
Q ss_pred HHHCCCCccHHHHHHH--HHHHHhcC--CHHH--HHHHHHHHHHC-CCCC--ChhhHHHH-HHHHHhcCC--HHHHHHHH
Q 048258 316 LLECGFKPDKFTFNSM--IDCLCRAH--RFED--ALDCLSEMVEW-GVPP--NTITYNIL-IRSLCAIGD--VARSLRLF 383 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g~--~~~a~~~~ 383 (504)
....+...+..++..+ +-.+...+ +..+ +..+++.+... .-.| +..++..+ +.++..... ..++...+
T Consensus 438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l 517 (608)
T PF10345_consen 438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL 517 (608)
T ss_pred hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 4455545455444432 11222222 2233 66666665432 1122 22233333 333322211 22444443
Q ss_pred HHHHhCC---CCCC---HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CC--CcccHHHH-----HHHHHhcCChhHH
Q 048258 384 QKMQADR---ISPD---IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RP--DNFSYSAL-----IKALIKSGRFDEA 449 (504)
Q Consensus 384 ~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l-----~~~~~~~g~~~~a 449 (504)
.+..+.- ...+ ..+++.+...+. .|+..+..+.........- .| ....|..+ ...+-..|+.++|
T Consensus 518 ~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka 596 (608)
T PF10345_consen 518 QEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKA 596 (608)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 3332210 1111 223333333333 6887776665544332111 12 23445333 3446678999999
Q ss_pred HHHHHHHHh
Q 048258 450 KQTFLSMEQ 458 (504)
Q Consensus 450 ~~~~~~~~~ 458 (504)
.....+...
T Consensus 597 ~~~~~~~~~ 605 (608)
T PF10345_consen 597 EEARQQLDR 605 (608)
T ss_pred HHHHHHHHH
Confidence 988877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.71 E-value=2.1 Score=24.46 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=15.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 120 SLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
.+..+|...|+.+.|.++++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 3556666666666666666666643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.70 E-value=12 Score=28.38 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=7.7
Q ss_pred cCChhhHHHHHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKE 108 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~ 108 (504)
.++.+++..+++.|.-
T Consensus 23 ~~d~~D~e~lLdALrv 38 (153)
T TIGR02561 23 SADPYDAQAMLDALRV 38 (153)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3444555555554443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=86.55 E-value=9.3 Score=28.91 Aligned_cols=96 Identities=8% Similarity=0.180 Sum_probs=65.6
Q ss_pred HhhhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCcHHhHHHHHHHHHhcCC-hhhHHHHHHHH
Q 048258 35 QMSVDQCKPDR--FTYNILIHGICRIGVVDEALRLVKQMEGLGY-----APNVYTYTILIDGFCNAKR-VAEVFRVLEIM 106 (504)
Q Consensus 35 ~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~ 106 (504)
.|.+.+.+++. ...|.++......+++.-.+.+++.+..... ..+...|..++.+.++..- --.+..+|..+
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34434434443 3357777777777888888877777643210 2356688899988866554 44567788888
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCC
Q 048258 107 KERNVCPNEATVRSLVHGVFRCLD 130 (504)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~ 130 (504)
++.+.++++.-|..++.++.+...
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCCC
Confidence 887788888889999988776533
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=21 Score=30.98 Aligned_cols=233 Identities=13% Similarity=0.030 Sum_probs=123.2
Q ss_pred ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCChhhH
Q 048258 218 PRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMM----DRATEICREMRDRDIAPNLVTF 293 (504)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 293 (504)
++..+....+.++...|.. ++......+... ++...-...+.++...|+. +++...+..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 3444444455555554432 222223333322 2444444555556666653 4566666655333 2344444
Q ss_pred HHHHHHHhcCCch-----HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048258 294 NTLISGHCKDAEV-----HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIR 368 (504)
Q Consensus 294 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (504)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..++..+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 4444444433221 122333333222 2355566666667777665 4566666666653 34445555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh
Q 048258 369 SLCAIG-DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFD 447 (504)
Q Consensus 369 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (504)
++...+ +...+...+..+.. .++..+-...+.++.+.|+ ..+...+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555543 23456666666664 3466666667777777777 45666655555532 2 234566777777774
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048258 448 EAKQTFLSMEQNGCNPDSYTSNLILETL 475 (504)
Q Consensus 448 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (504)
+|...+..+.+. .||..+-...+.++
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 678888877764 45666665555554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.56 E-value=21 Score=30.12 Aligned_cols=152 Identities=9% Similarity=0.026 Sum_probs=73.4
Q ss_pred CChhhHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCcchhHHHHHHHHHhcCCC
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEA---TVRSLVHGVFRCLDPHKAFELLIRFMER-----EPLTQKLVCNTLLYRLSNNSM 165 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~ 165 (504)
.++++|+.-|++..+.......+ .+..++....+.+++++..+.|.+++.- -...+....|+++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35666666666665542222222 3344566666666666666666655431 011123344555554444444
Q ss_pred hHHHHHHHH-------HHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCC----Ccc-------HHHHHHHH
Q 048258 166 ASEAAAILR-------KMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGV----KPR-------FSTYLLLM 227 (504)
Q Consensus 166 ~~~a~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-------~~~~~~l~ 227 (504)
.+.-...++ ..... +.-..|-..+...|...+.+....++++++.+.-. ..| ...|..-+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 333333322 22211 11222334455666666666666666666554311 111 23445555
Q ss_pred HHHHhcCCcHHHHHHHHHHH
Q 048258 228 EALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~ 247 (504)
+.|....+-.....+|++.+
T Consensus 199 QmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhcccHHHHHHHHHHH
Confidence 66666666555556666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.22 E-value=10 Score=26.17 Aligned_cols=63 Identities=8% Similarity=0.049 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 25 SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
|.-++.+-++.+...+.-|++....+.+++|.+.+++..|+++|+-++.+- ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 444556666666666666777777777777777777777777777666331 123335555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.97 E-value=15 Score=31.25 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=42.9
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC----- 266 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 266 (504)
|.+++..++|.+++...-+..+.--+..+.....-|-.|.+.+.+....++-...+...-..+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 445555555555555544444332223334444445555566666655555555554433333333444444433
Q ss_pred hcCCHHHHHHHH
Q 048258 267 KVNMMDRATEIC 278 (504)
Q Consensus 267 ~~~~~~~a~~~~ 278 (504)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 246666666555
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.49 E-value=35 Score=31.83 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCCHHhH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH---HHhcCChhHHHHHHHHHHh-cCCCCChh
Q 048258 392 SPDIYTF-NALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKA---LIKSGRFDEAKQTFLSMEQ-NGCNPDSY 466 (504)
Q Consensus 392 ~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~-~~~~~~~~ 466 (504)
.|+..++ +.++..+...|-..+|...+..+.... +|+...|..++.. ...+| ...++++++.|.. .| .|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 3444433 556666777777888888888877752 4455556655543 22233 6677778877764 34 5666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.|.....--...|..+.+-.++.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 776666665677777777666666554
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.33 E-value=18 Score=30.76 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=58.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc---
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK--- 302 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 302 (504)
=|+++...+++.++..+.-+..+..-+..+.+...-|-.|.+.+.+..+.++-..-....-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36777788888888777666665544445666777777788888888888777776654322233446666655543
Q ss_pred --CCchHHHHHHH
Q 048258 303 --DAEVHKTRELL 313 (504)
Q Consensus 303 --~~~~~~a~~~~ 313 (504)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 67777777666
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.25 E-value=0.56 Score=35.79 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHH
Q 048258 51 LIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLE 104 (504)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 104 (504)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555556666666666554434445556666666666655555555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.05 E-value=0.71 Score=35.21 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=23.4
Q ss_pred HHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048258 297 ISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLS 349 (504)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (504)
+..+.+.+.+......++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444445444443333344444555555555544444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=83.78 E-value=46 Score=32.63 Aligned_cols=27 Identities=15% Similarity=0.280 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
+..|+ .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 66676 6777778899999999885544
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.28 E-value=27 Score=29.52 Aligned_cols=203 Identities=13% Similarity=0.090 Sum_probs=115.9
Q ss_pred CCCCCChhhHHHHHHHH-HccCChhhHHHHHHHHHhcCCC---ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC---C-
Q 048258 179 RGYLPESSTFDYTVTCL-VTGLDLNETCGILDTFIKRGVK---PRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD---R- 250 (504)
Q Consensus 179 ~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~- 250 (504)
.+..||+..-+..-.+- .+..+.++|+.-|++..+.... -...++..++....+.+++++..+.|.+++.- .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34556665544433221 2345778888888888775322 23345666778888888888888888877631 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCh----hhHHHHHHHHhcCCchHHHHHHHHHHHHCC---
Q 048258 251 -LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR--DIAPNL----VTFNTLISGHCKDAEVHKTRELLVMLLECG--- 320 (504)
Q Consensus 251 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 320 (504)
-.-+..+.|.++...+...+.+-..+.++.-.+. +.+ +. .|-..+...|...+.+.+..+++.++...-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1224556777777766666666666666543321 011 21 233456667777777777777777765431
Q ss_pred -CCcc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHH-----HhcCCHHHHHHHH
Q 048258 321 -FKPD-------KFTFNSMIDCLCRAHRFEDALDCLSEMVEW-GVPPNTITYNILIRSL-----CAIGDVARSLRLF 383 (504)
Q Consensus 321 -~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~ 383 (504)
..-| ...|..-+..|....+-.+...++++.... .--|.+.... +++-| .+.|++++|-.-|
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence 1111 235566666777777777777777766532 1223443332 33333 3456676665433
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.88 E-value=8.6 Score=27.95 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 413 KAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 413 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+..+-++.+...++.|++......+.+|.+.+++..|.++++-...+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445555566667777777777777777777777777777777654
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.80 E-value=60 Score=33.25 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 258 YNMVIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
|....-.+.+.|+.++|+.++-....
T Consensus 687 ~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 687 YEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33344445578888888888766654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.77 E-value=3.6 Score=21.50 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMS 37 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (504)
|..+...+...|+++.|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555554444
|
... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.75 E-value=11 Score=30.55 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCChhhHHHHHH
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNV--CPNEATVRSLVH 123 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 123 (504)
.+..++.+.+.++..+++.+.+.-.+.. +.|...-..+++.++-.|++++|..-++-.-+... .+....|..+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445666777778888888777766553 44566666777778888888888877776665421 122334555544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.27 E-value=33 Score=29.84 Aligned_cols=235 Identities=11% Similarity=0.017 Sum_probs=142.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh----hhHHHHHHHHHHcCCCCChhh
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV----AEVFRVLEIMKERNVCPNEAT 117 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~ 117 (504)
.++.......+.++...|.. .+...+..+.+ .+|...-...+.++.+.|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 46777777777777777753 34444444544 34666666667777777763 4577777766443 356666
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 048258 118 VRSLVHGVFRCLDP-----HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTV 192 (504)
Q Consensus 118 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (504)
-...+.++...+.. ..+.+.+...... .+..+-...+.++.+.+. .++...+-.+... ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 66666666555422 2333333333222 244455566667777765 4566666666652 3555555555
Q ss_pred HHHHccC-ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048258 193 TCLVTGL-DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMM 271 (504)
Q Consensus 193 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (504)
.++...+ +...+...+..+.. .++..+-...+.++.+.++ ..+...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6665543 24466666666664 4566777778888888877 56666666666543 2 234677788888885
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 048258 272 DRATEICREMRDRDIAPNLVTFNTLISGHC 301 (504)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (504)
+|...+..+... .||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888888765 336666666665554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.12 E-value=30 Score=33.07 Aligned_cols=133 Identities=13% Similarity=-0.008 Sum_probs=94.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
..+.++..+-++|-.+.|+++ .+|+..- .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 566777888888888888765 3444322 223356789999988776643 5667999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHH
Q 048258 92 NAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAA 171 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (504)
..|++..|.+.|...... ..|+-.+...|+.+....+-....+.+.. |....++...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence 999999999999887643 35666677778877666666666555543 223345667899999998
Q ss_pred HHHHHh
Q 048258 172 ILRKMG 177 (504)
Q Consensus 172 ~~~~~~ 177 (504)
++.+-.
T Consensus 743 lLi~t~ 748 (794)
T KOG0276|consen 743 LLISTQ 748 (794)
T ss_pred HHHhcC
Confidence 887653
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.40 E-value=30 Score=32.97 Aligned_cols=112 Identities=10% Similarity=-0.021 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCF 265 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (504)
..+|...-.+...|+...|...+.................++....+.|...+|..++.+.+... ...+-++..+.+++
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY 686 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence 33343333444567777777777666554322233445566666777777777777777766554 33555666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048258 266 CKVNMMDRATEICREMRDRDIAPNLVTFNTLISG 299 (504)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (504)
....+.+.|++.|++..+.... +...-+.+...
T Consensus 687 l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 7788888888888777766433 44444444433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=80.33 E-value=70 Score=32.40 Aligned_cols=226 Identities=10% Similarity=0.038 Sum_probs=117.8
Q ss_pred HHccCChhhHHHHHHHHHhcCCCccHH-------HHHHH-HHHHHhcCCcHHHHHHHHHHHhCC----CCCCHHHHHHHH
Q 048258 195 LVTGLDLNETCGILDTFIKRGVKPRFS-------TYLLL-MEALYKAGRDVEGDRYLNHVFKDR----LVSNVNSYNMVI 262 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 262 (504)
.....++.+|..++.+....-..|+.. .+..+ .......|+++.|.++.+.....- ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776642222111 12221 223445788888888877776542 233455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHhcCCch--HHHHHHHHHHHHCC---CC---ccHHHHH
Q 048258 263 DCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLI-----SGHCKDAEV--HKTRELLVMLLECG---FK---PDKFTFN 329 (504)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~~ 329 (504)
.+..-.|++++|..+..+..+..-..+...+..+. ..+...|+. .+....+....... .+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77888899999998887766542222333333222 234556632 22233333322211 01 1123344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHhHHHHH
Q 048258 330 SMIDCLCRA-HRFEDALDCLSEMVEWGVPPNTIT--YNILIRSLCAIGDVARSLRLFQKMQADRISP----DIYTFNALI 402 (504)
Q Consensus 330 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 402 (504)
.++.++.+. +...++..-+.-.......|-... +..++......|++++|...+.++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 112222222222222211222222 2367777888999999999998887643222 222222222
Q ss_pred H--HHHccCCHHHHHHHHHH
Q 048258 403 Q--SFCRMNKIEKAEKAFFS 420 (504)
Q Consensus 403 ~--~~~~~g~~~~a~~~~~~ 420 (504)
. .....|+...+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2 23467888888777655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 94.5 bits (233), Expect = 2e-20
Identities = 24/213 (11%), Positives = 62/213 (29%), Gaps = 4/213 (1%)
Query: 213 KRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD 272
+ P L++ + +L C + +
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 273 RATEI---CREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFN 329
A + R + L +N ++ G + + +L M+ + G PD ++
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 330 SMIDCLCRAHRFEDAL-DCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQA 388
+ + C+ R + + CL +M + G+ + +L+ + ++
Sbjct: 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264
Query: 389 DRISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421
P + L++ + K +
Sbjct: 265 PPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.9 bits (221), Expect = 5e-19
Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 5/217 (2%)
Query: 274 ATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMID 333
A + R +P L+ + + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 334 CLCRAHRFEDA---LDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR 390
C + A L + YN ++ G + + ++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 391 ISPDIYTFNALIQSFCRMNKIEKA-EKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEA 449
++PD+ ++ A +Q R ++ E+ M GL+ + L+ ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 450 KQTFLSMEQNGCNPD-SYTSNLILETLVQQGRFEEAH 485
+ + P TS L+ + + GR
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.2 bits (188), Expect = 5e-15
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 3/182 (1%)
Query: 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALR 66
SP ++ S+D+ Q S Q + + A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 67 LV---KQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123
L+ + Y ++ G+ E+ VL ++K+ + P+ + + +
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP 183
+ R E + M +E L + + +L + + +A ++
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 184 ES 185
Sbjct: 269 PP 270
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.6 bits (184), Expect = 1e-14
Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 4/165 (2%)
Query: 5 GISPSTRLYNAVIDALVKSNSIDLAY---LKFQQMSVDQCKPDRFTYNILIHGICRIGVV 61
+S + A + ++ + LA+ + + YN ++ G R G
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 62 DEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAE-VFRVLEIMKERNVCPNEATVRS 120
E + ++ ++ G P++ +Y + + A + R LE M + +
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM 165
L+ R ++ F L + + LL +
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.7 bits (140), Expect = 3e-09
Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 3/120 (2%)
Query: 382 LFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALI 441
L + SP L+Q ++ + L A K +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 442 KSGRFDEAKQTFL---SMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGISF 498
+ + A + Q N ++ +QG F+E ++ K+ G++
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 5e-07
Identities = 23/228 (10%), Positives = 63/228 (27%), Gaps = 4/228 (1%)
Query: 102 VLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLS 161
+ + ++ P E + L+ L + + + Q+
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 162 NNSMASEAAAIL---RKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKP 218
A +L + L ++ + E +L G+ P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 219 RFSTYLLLMEALYKAGRDVEG-DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEI 277
+Y ++ + + +D +R L + ++ L +++ + ++ ++
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 278 CREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDK 325
P V + L+ +L + L +K
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-09
Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 10/153 (6%)
Query: 335 LCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD 394
+A FE A ++ P NT +L + RS A + +P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AIKQNPL 65
Query: 395 IY-TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN-FSYSALIKALIKSGRFDEAKQT 452
+ ++ L + ++++A + + L L+PD Y L AL+ +G + A Q
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 453 F-LSMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
+ +++ N S+L L GR EEA
Sbjct: 124 YVSALQYNPDLYCVR-SDLGN-LLKALGRLEEA 154
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 16/157 (10%)
Query: 334 CLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISP 393
+ R + + + ++ P Y+ L G + ++ ++ A R+ P
Sbjct: 42 IHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRH--ALRLKP 98
Query: 394 DIY-TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-SYSALIKALIKSGRFDEAKQ 451
D + L + +E A +A+ S L PD + S L L GR +EAK
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 452 TF---LSMEQNGCNPDSYTSNLIL-ETLVQQGRFEEA 484
+ + P+ + L QG A
Sbjct: 157 CYLKAIET-----QPNFAVAWSNLGCVFNAQGEIWLA 188
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 15/169 (8%)
Query: 322 KPD-KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSL 380
KPD + ++ L A E A+ +++ P + L L A+G + +
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAK 155
Query: 381 RLFQKMQADRISPDIY-TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-SYSALIK 438
+ K A P+ ++ L F +I A F + L P+ +Y L
Sbjct: 156 ACYLK--AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF--EKAVTLDPNFLDAYINLGN 211
Query: 439 ALIKSGRFDEAKQTF---LSMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
L ++ FD A + LS+ N + + NL +QG + A
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPN--HAVVH-GNLAC-VYYEQGLIDLA 256
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 11/167 (6%)
Query: 322 KPDKF-TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSL 380
P+ + ++ + L A F+ A+ + P + + + L G + ++
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAI 257
Query: 381 RLFQKMQADRISPDIY-TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-SYSALIK 438
+++ A + P + L + + +AE + L L P + S + L
Sbjct: 258 DTYRR--AIELQPHFPDAYCNLANALKEKGSVAEAEDCY--NTALRLCPTHADSLNNLAN 313
Query: 439 ALIKSGRFDEAKQTFL-SMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
+ G +EA + + ++E ++ SNL L QQG+ +EA
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAH-SNLAS-VLQQQGKLQEA 358
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 340 RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTF 398
DA L E + + P +Y L +L + + FQK A ++P+ T+
Sbjct: 258 NLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFKFFQK--AVDLNPEYPPTY 313
Query: 399 NALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN-FSYSALIKALIKSGRFDEAKQTF-LSM 456
Q + + + A++ F L P+N + Y L L K G+F E++ F +
Sbjct: 314 YHRGQMYFILQDYKNAKEDF--QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371
Query: 457 EQNGCNPDSYTSNLILETLVQQGRFEEA 484
+ P+ E L +G F+ A
Sbjct: 372 LKFPTLPEVP--TFFAEILTDRGDFDTA 397
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 11/157 (7%)
Query: 332 IDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC--AIGDVARSLRLFQKMQAD 389
+ + + ++ A LS+ ++ + T ++ L + L D
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQ-RLYSATDEGYLVANDLLTKSTDMYHSLLSANTV--DD 236
Query: 390 RISPDIY-TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDE 448
+ + N + A+ ++ L P SY L L E
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQE--SINLHPTPNSYIFLALTLADKENSQE 294
Query: 449 AKQTF-LSMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
+ F +++ N P +Y + ++ A
Sbjct: 295 FFKFFQKAVDLNPEYPPTY--YHRGQMYFILQDYKNA 329
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 3e-07
Identities = 61/440 (13%), Positives = 117/440 (26%), Gaps = 108/440 (24%)
Query: 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYT 191
++ ++L F + C + + E I+ D S T
Sbjct: 16 YQYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEIDHII-MSKDA----VSGT-LRL 67
Query: 192 VTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDR--YL------ 243
L L E ++ F++ ++ Y LM + R Y+
Sbjct: 68 FWTL---LSKQEE--MVQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 244 ---NHVFKDRLVSNVNSYNMVIDCFCKVNMMDR--------------ATEICREMRDRDI 286
N VF VS + Y + ++ A ++C + +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 287 APNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRA-HRFEDAL 345
+ + L +C + +L ML + ++ D + S D R
Sbjct: 180 MDFKIFWLNL--KNC-----NSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQ 231
Query: 346 DCLSEMVEWGVPPNTITYNILIRSLCAIGDV--ARSLRLF-----------QKMQADRIS 392
L +++ N L + +V A++ F K D +S
Sbjct: 232 AELRRLLKSKPYEN---------CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 393 PDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSA---------LIKALIKS 443
T +L + E K+ L RP + +I I+
Sbjct: 283 AATTTHISLDHHSMTLTPDEV--KSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 444 G--RFD-------EAKQTFLSMEQNGCNPDSYTSNL---------------ILETLVQQG 479
G +D + T + N P Y +L +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 480 RFEEAHDIVKTSKERGISFK 499
+ +V + + K
Sbjct: 400 IKSDVMVVVNKLHKYSLVEK 419
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 47/330 (14%), Positives = 101/330 (30%), Gaps = 33/330 (10%)
Query: 170 AAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEA 229
A+ +G + FD +V L D N+ ++ ++R + + + L E
Sbjct: 80 ASANEGLGK----FADAMFDLSVLSLN--GDFNDA--SIEPMLERNLNKQAMSKL--KEK 129
Query: 230 LYKAGRDVE---------GDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICRE 280
+ V+++ S+ + D + E +E
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189
Query: 281 MRD--RDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF-TFNSMIDCLCR 337
+ + ++ A +L + K +
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 338 AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQK-MQADRISPDIY 396
+ A + + + +E + P +Y + + D F K ++ D + +Y
Sbjct: 250 KNDPLGAHEDIKKAIE--LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY 307
Query: 397 TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN-FSYSALIKALIKSGRFDEAKQTF-L 454
Q + ++A K F L P+N F Y L + +FD+ + F
Sbjct: 308 YHRG--QMNFILQNYDQAGKDF--DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363
Query: 455 SMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
+ + P+ N E L + F++A
Sbjct: 364 AKRKFPEAPEVP--NFFAEILTDKNDFDKA 391
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 15/173 (8%)
Query: 322 KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLR 381
P ++ M + + + + + ++ N+ Y + + + ++ +
Sbjct: 267 FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325
Query: 382 LFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-SYSALIKA 439
F K A + P+ I+ + L R NK + E F P+ + +
Sbjct: 326 DFDK--AKELDPENIFPYIQLACLAYRENKFDDCETLF--SEAKRKFPEAPEVPNFFAEI 381
Query: 440 LIKSGRFDEAKQTF-LSMEQNGCNPDSY-------TSNLILETLVQQGRFEEA 484
L FD+A + + L++E Y +L F EA
Sbjct: 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 8e-07
Identities = 27/202 (13%), Positives = 60/202 (29%), Gaps = 16/202 (7%)
Query: 288 PNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI-DCLCRAHRFEDALD 346
P L + L + TF M + AL
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 347 CLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD---IYTFNALIQ 403
L + + + ++ L + + + + +KMQ D A +
Sbjct: 123 TLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ--DQDEDATLTQLATAWVS 174
Query: 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFL-SMEQNGCN 462
K++ A F + P + + GR++ A+ +++++ +
Sbjct: 175 LAAGGEKLQDAY-YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
Query: 463 PDSYTSNLILETLVQQGRFEEA 484
P++ NL++ G+ E
Sbjct: 234 PETLI-NLVV-LSQHLGKPPEV 253
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 18/152 (11%), Positives = 46/152 (30%), Gaps = 16/152 (10%)
Query: 340 RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFN 399
++ LD + P + L + + + + + TF
Sbjct: 49 KYGVVLDEIKPSS----APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL 104
Query: 400 ALI-QSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458
+ + + A + +L + ++ L+K R D A++ M+
Sbjct: 105 LMAASIYFYDQNPDAALRTLHQGDSLEC------MAMTVQILLKLDRLDLARKELKKMQD 158
Query: 459 NGCNPDSYTSNLIL---ETLVQQGRFEEAHDI 487
+ D+ + L + ++A+ I
Sbjct: 159 --QDEDATLTQLATAWVSLAAGGEKLQDAYYI 188
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 7/118 (5%)
Query: 370 LCAIGDVARSLRLFQKMQADRISPDIY-TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRP 428
L + + + D + P+ F L +M K +A++ F +L L
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK--SLRLNR 172
Query: 429 DNF-SYSALIKALIKSGRFDEAKQTF-LSMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
+ + L K + A+Q + L + G N S L + + A
Sbjct: 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL--LLGIRLAKVFEDRDTA 228
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 14/151 (9%)
Query: 340 RFEDALDCLSEMVEWGVPPN-TITYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYT 397
E A L + +E + P+ + L + + ++K A
Sbjct: 52 NTEQAKVPLRKALE--IDPSSADAHAALAVVFQTEMEPKLADEEYRK--ALASDSRNARV 107
Query: 398 FNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-SYSALIKALIKSGRFDEAKQTF--- 453
N + E+A + L P+ + L ++ + +AK+ F
Sbjct: 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167
Query: 454 LSMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
L + +N P + + L ++ + A
Sbjct: 168 LRLNRN--QPSVA-LEMA-DLLYKEREYVPA 194
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 20/197 (10%), Positives = 47/197 (23%), Gaps = 45/197 (22%)
Query: 329 NSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQK--- 385
+ L + +++V+ P +T+ + + ++ + R F K
Sbjct: 343 PLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401
Query: 386 -----------------------------MQADRISPDIYT-FNALIQSFCRMNKIEKAE 415
A R+ + + L ++ I A
Sbjct: 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461
Query: 416 KAFFSMLTLGLRPDN-FSYSALIKALIKSGRFDEAKQTF-----LSMEQNGCNPDSYT-- 467
+ + L + + L A F L +
Sbjct: 462 EYL--QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Query: 468 SNLILETLVQQGRFEEA 484
+NL + ++ A
Sbjct: 520 ANLGH-AYRKLKMYDAA 535
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 13/171 (7%)
Query: 320 GFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG----D 375
G K + F+ A +C E + ++ L+ + D
Sbjct: 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM-VDAKCYEAFDQLVSNHLLTADEEWD 253
Query: 376 VARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN-FSYS 434
+ L + D + + +++ +AE ++ +
Sbjct: 254 LVLKLNYSTYSKEDAAFLRSL-YMLKLNKTSHEDELRRAEDYL---SSINGLEKSSDLLL 309
Query: 435 ALIKALIKSGRFDEAKQTFLS-MEQNGCNPDSYTSNLILETLVQQGRFEEA 484
L RF + +E + N D Y L L +L + G +
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVY--PLHLASLHESGEKNKL 358
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 34/229 (14%), Positives = 75/229 (32%), Gaps = 19/229 (8%)
Query: 264 CFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKP 323
+ ++ DRA E +E D F+ L+S H A+ L + +
Sbjct: 209 VYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267
Query: 324 DKFT---FNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSL 380
F + ++ A D LS G+ ++ +L L
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSS--INGLEKSSDLLLCKADTLFVRSRFIDVL 325
Query: 381 RLFQK-MQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-SYSALIK 438
+ K ++ D + D+Y + S + K ++ P+ ++ A+
Sbjct: 326 AITTKILEIDPYNLDVY--PLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGI 381
Query: 439 ALIKSGRFDEAKQTF---LSMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
+ + EA++ F +M+ ++ + +G ++A
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQ--FGPAWI-GFAH-SFAIEGEHDQA 426
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 23/174 (13%), Positives = 54/174 (31%), Gaps = 25/174 (14%)
Query: 334 CLCRAHRFEDALDCLSEMVEW---------------GVPPNTITYNILIRSLCAIGDVAR 378
CL + + ++ AL+ L E + G+ + + + + R
Sbjct: 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218
Query: 379 SLRLFQKMQADRISPDIY-TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS----Y 433
+ +++ A + Y F+ L+ + + E+ + + + D Y
Sbjct: 219 AKECYKE--ALMVDAKCYEAFDQLVSNHL-LTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275
Query: 434 SALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDI 487
+ A+ S+ + D +TL + RF + I
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLC--KADTLFVRSRFIDVLAI 327
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 19/169 (11%), Positives = 49/169 (28%), Gaps = 25/169 (14%)
Query: 334 CLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISP 393
+ + AL L+++++ T L G + + F+K + +P
Sbjct: 69 VFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKK--VLKSNP 125
Query: 394 DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG--------------LRPDNFS-YSALIK 438
+ +++++ + G + + +
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 439 ALIKSGRFDEAKQTF---LSMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
IK G +A ++ + N +++ I Q G E +
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKND--NTEAF--YKISTLYYQLGDHELS 230
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 9/159 (5%)
Query: 329 NSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQK-MQ 387
S+ + F+ S ++E P + + I +L + L K +
Sbjct: 26 VSLAERHYYNCDFKMCYKLTSVVME-KDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 388 ADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-SYSALIKALIKSGRF 446
+P + F +K E A + T L ++ A +
Sbjct: 85 LYPSNPVSW-FAVGCYYLMVGHKNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEH 141
Query: 447 DEAKQTFLSMEQNGCNPDSYTSNLIL-ETLVQQGRFEEA 484
D+A + + Q + L + + A
Sbjct: 142 DQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNSKLA 178
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 11/118 (9%)
Query: 372 AIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN 430
A +L + + + N L ++ K +A L L P N
Sbjct: 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH--RQALVLIPQN 269
Query: 431 FS-YSALIKALIKSGRFDEAKQTF---LSMEQNGCNPDSYTSNLILETLVQQGRFEEA 484
S YSA+ G F+ A F L + ++ D+++ ++ + EA
Sbjct: 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD----DTFSVTMLGHCIEMYIGDSEA 323
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Length = 310 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 3e-04
Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 7/159 (4%)
Query: 342 EDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLR-LFQKMQADRISPDIYTFNA 400
++ L +++ + +L + +GD+ +SL + + D
Sbjct: 83 TKNIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL 141
Query: 401 LIQSFCRMNKIEKAEKAFFSMLTL---GLRPDNFSYSALIKALIKSGRFDEAKQ--TFLS 455
I+ N + A F + + DN L ++ IK E +
Sbjct: 142 AIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYY 201
Query: 456 MEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494
E + P T +L +QQ EA IV+
Sbjct: 202 EELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 18/80 (22%)
Query: 411 IEKAEKAFFSMLTLGLRPDN-FSYSALIKALIKSGRFDEAKQTF---LSMEQNGCNPDSY 466
E+ E L DN L K + +FD A L +P Y
Sbjct: 5 TERLEAM------LAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPT-Y 52
Query: 467 TS--NLILETLVQQGRFEEA 484
+ + +TL QG A
Sbjct: 53 SVAWKWLGKTLQGQGDRAGA 72
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 17/161 (10%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 328 FNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQ 387
+ + ++ A E+++ P N G +LR+++K
Sbjct: 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEK-- 113
Query: 388 ADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN-FSYSALIKALIKSGR 445
++ D + L + + EK + L ++ + + + R
Sbjct: 114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK-KLSSPTKMQYARYRDGLSKLFTTR 172
Query: 446 FDEAKQTF---LSMEQNGCNPDSYTSNLILETLVQQGRFEE 483
+++A+ + + P + + + L +
Sbjct: 173 YEKARNSLQKVILR-----FPSTEAQKTLDKILRIEKEVNR 208
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 32/179 (17%)
Query: 328 FNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQ 387
+C + A+ L + NT + + +GD SL ++
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASK-LKSDNTEAFYKISTLYYQLGDHELSLSEVRE-- 213
Query: 388 ADRISPD-------------IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN---- 430
++ D + + R + A + S++ P
Sbjct: 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYT 271
Query: 431 -FSYSALIKALIKSGRFDEAKQTF---LSMEQNGCNPDSYTSNLIL-ETLVQQGRFEEA 484
S + K + EA + L M PD+ + E + + ++EA
Sbjct: 272 VRSKERICHCFSKDEKPVEAIRICSEVLQM-----EPDNVNALKDRAEAYLIEEMYDEA 325
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.62 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.61 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.5 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.49 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.48 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.35 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.32 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.26 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.26 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.2 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.2 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.19 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.17 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.14 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.13 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.13 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.12 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.12 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.11 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.1 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.04 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.04 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.03 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.03 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.98 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.94 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.94 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.9 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.89 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.87 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.87 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.85 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.83 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.82 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.81 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.81 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.79 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.76 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.76 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.75 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.72 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.7 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.68 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.67 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.66 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.64 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.6 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.59 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.58 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.56 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.5 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.47 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.44 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.43 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.42 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.25 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.22 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.2 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.16 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.14 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.1 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.09 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.07 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.06 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.0 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.98 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.94 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.92 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.86 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.78 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.77 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.69 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.64 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.59 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.23 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.13 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.13 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.13 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.05 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.98 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.94 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.89 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.69 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.56 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.51 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.49 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.45 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.44 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.09 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.01 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.9 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.04 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.67 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.53 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.18 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.2 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.09 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.03 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.89 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.31 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.07 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.46 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.33 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.96 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.72 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.63 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.59 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.58 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.01 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.82 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.22 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.43 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.18 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.07 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.0 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.54 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.48 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.81 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.42 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 80.53 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=341.68 Aligned_cols=475 Identities=10% Similarity=-0.017 Sum_probs=388.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|+.+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56777888888888888888888888888754 467778888888888888888888888887543 56788888888
Q ss_pred HHHHhcCChhhHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKER---------------NVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLV 152 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
.+|.+.|++++|.++|+++... +.+++..++..++.+|.+.|++++|.+.|+++...+|. +...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 8888888888888888843211 12234677888888888888888888888888877654 4445
Q ss_pred HHHHHHHHhcCCChHHHHH--H-HHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHH
Q 048258 153 CNTLLYRLSNNSMASEAAA--I-LRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEA 229 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (504)
+..+...+...+..+.+.. + +..+...+..+...++..++..|.+.|++++|.++++.+.+. +++..++..++..
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 5555544443332222111 1 333333333334445566677888899999999999998876 5789999999999
Q ss_pred HHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHH
Q 048258 230 LYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKT 309 (504)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (504)
+.+.|++++|.++|+++.+.++. +..++..++.++.+.|++++|..+++.+.... +.+..++..++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999987755 78889999999999999999999999998664 44788999999999999999999
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 310 RELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
.++|+.+.+.. +.+..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998753 3468899999999999999999999999999874 458889999999999999999999999999886
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 048258 390 RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL----GLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP 463 (504)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 463 (504)
. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 3 457889999999999999999999999999875 55777 6789999999999999999999999999864 44
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 464 DSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+..++..++.+|.+.|++++|.++++++.+..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999865
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=317.78 Aligned_cols=457 Identities=11% Similarity=0.020 Sum_probs=387.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------
Q 048258 6 ISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL----------- 74 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------- 74 (504)
..|+..++..++..|.+.|++++|+.+|+.+... ++++.+++.++.+|.+.|++++|+++|+++...
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 4578889999999999999999999999998654 688999999999999999999999999953322
Q ss_pred ----CCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH--H-HHHHHhcCCC
Q 048258 75 ----GYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFE--L-LIRFMEREPL 147 (504)
Q Consensus 75 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~ 147 (504)
+.+++..+|+.++.+|.+.|++++|.+.|+++.+.+. .+...+..+...+...++.+.+.. + +..+...++.
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 2345688999999999999999999999999998752 244555555554443332222211 1 4444444444
Q ss_pred cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHH
Q 048258 148 TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLM 227 (504)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (504)
....+|+.++..|.+.|++++|.++|+++... .++..++..++..+.+.|++++|+++++++.+.+ +.+..++..++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 45566777788899999999999999999875 4789999999999999999999999999999875 44778899999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchH
Q 048258 228 EALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVH 307 (504)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (504)
.++.+.|++++|..+++.+.+..+. +..+++.++..|.+.|++++|.++|+++.+... .+..+|..++..|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999976544 788999999999999999999999999988643 36789999999999999999
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 308 KTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQ 387 (504)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 387 (504)
+|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998875 3478899999999999999999999999999864 4578899999999999999999999999998
Q ss_pred hC----CCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 048258 388 AD----RISPD--IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC 461 (504)
Q Consensus 388 ~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 461 (504)
+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.+|...|++++|.+.++++.+.
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-- 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI-- 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 75 55777 7799999999999999999999999999874 447889999999999999999999999999985
Q ss_pred CC-ChhhHHHHHHHH
Q 048258 462 NP-DSYTSNLILETL 475 (504)
Q Consensus 462 ~~-~~~~~~~l~~~~ 475 (504)
.| +...+..+..+|
T Consensus 580 ~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 580 SPNEIMASDLLKRAL 594 (597)
T ss_dssp CTTCHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHH
Confidence 45 556666666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-30 Score=233.16 Aligned_cols=363 Identities=10% Similarity=-0.004 Sum_probs=225.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
+...+.+.|++++|...++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566778899999999998887765 5567777777888888899999998888887764 5577888888888889999
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+++|+..|+++.+.. +.+...+..+..++...|++++|.+.|+++....|. ....+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999888763 234557888888888888888888888888877654 445666677777777777777777777
Q ss_pred HhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCH
Q 048258 176 MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNV 255 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (504)
+..... .+..++..+...+...|++++|+..++++.+.+ +.+...+..+...+...|++++|...+.++....+. +.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 765421 134556666666666666666666666666543 333455555555555555555555555555554433 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCL 335 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (504)
.++..+...+.+.|++++|+..|+++.+.++. +..++..+...+.+.|++++|...++.+.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 45555555555555555555555555544221 33444444444444455555555444444332 22344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 336 CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQA 388 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (504)
.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|...|+++.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444431 22333444444444444444444444444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-29 Score=229.83 Aligned_cols=382 Identities=14% Similarity=0.022 Sum_probs=243.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 048258 52 IHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDP 131 (504)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (504)
...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556666666666666665543 3344455555556666666666666666665543 23455566666666666666
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTF 211 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (504)
++|.+.|+++....|. +...+..+...+...|++++|.+.|+ .+
T Consensus 84 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~-----------------------------------~a 127 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYV-----------------------------------SA 127 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHH-----------------------------------HH
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------HH
Confidence 6666666665554433 33344444444455555555555444 44
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 048258 212 IKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLV 291 (504)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 291 (504)
.+.. +.+...+..+...+...|++++|.+.|+++.+..+. +..++..+...+...|++++|+..|+++.+.++. +..
T Consensus 128 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T 1w3b_A 128 LQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp HHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHH
Confidence 4432 223344455555556666666666666666655433 5566666667777777777777777777665422 455
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC 371 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (504)
.+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..+|..+..++.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 66667777777777777777777766543 2246667777777777777888887777777753 335667777777788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 048258 372 AIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQ 451 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 451 (504)
+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++.++.+.|++++|..
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777652 4566677777788888888888888888877652 3345667777888888888888888
Q ss_pred HHHHHHhcCCCC-ChhhHHHHHHHHHhcCC
Q 048258 452 TFLSMEQNGCNP-DSYTSNLILETLVQQGR 480 (504)
Q Consensus 452 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 480 (504)
.++++.+. .| +...+..++.++...|+
T Consensus 361 ~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 361 HYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 88888764 34 45667777777766553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=241.76 Aligned_cols=185 Identities=18% Similarity=0.243 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCChhhH
Q 048258 293 FNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHR---------FEDALDCLSEMVEWGVPPNTITY 363 (504)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 363 (504)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|.+.+. .+.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444444455555555555555555444444555555555544443322 34555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 048258 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKS 443 (504)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (504)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 048258 444 GRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQ 477 (504)
Q Consensus 444 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 477 (504)
|+.++|.+++++|.+.|..|+..||..+...+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=239.05 Aligned_cols=203 Identities=14% Similarity=0.187 Sum_probs=170.5
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc---------hHHHH
Q 048258 241 RYLNHVFKDRLVSNV-NSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE---------VHKTR 310 (504)
Q Consensus 241 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~ 310 (504)
.+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 334444444443333 45778889999999999999999999999999999999999998876543 67899
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 311 ELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR 390 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (504)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 048258 391 ISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKS 443 (504)
Q Consensus 391 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (504)
+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..+...
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999988887653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=218.96 Aligned_cols=444 Identities=10% Similarity=-0.004 Sum_probs=313.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|+..++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567788899999999999999999999874 689999999999999999999999999998875 4567889999999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
+...|++++|...|+++...+. ++......++..+........+.+.+..+......++....................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999988753 344444444444444333333333222211111100000000000000001111111
Q ss_pred HHHHHHHhhCCCC--------C-ChhhHHHHHHHHHc---cCChhhHHHHHHHHHh-----cCC--------CccHHHHH
Q 048258 170 AAILRKMGDRGYL--------P-ESSTFDYTVTCLVT---GLDLNETCGILDTFIK-----RGV--------KPRFSTYL 224 (504)
Q Consensus 170 ~~~~~~~~~~~~~--------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 224 (504)
..+...+...... | +...+......+.. .|++++|+..++++.+ ... +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111111 1 23344444444444 7889999999988887 311 22356777
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA 304 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (504)
.++..+...|++++|...++.+.+..+. ...+..+..++...|++++|...++.+..... .+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence 8888889999999999999998887655 77888888889999999999999998887643 36677888888899999
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQ 384 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 384 (504)
++++|...++.+.+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998887643 356678888888889999999999999888763 4466788888889999999999999998
Q ss_pred HHHhCCCC-CC----HHhHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048258 385 KMQADRIS-PD----IYTFNALIQSFCR---MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 385 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
++.+.... ++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+..++...|++++|...++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88764211 11 3378888888888 899999999999988753 334667788888899999999999999999
Q ss_pred HhcCCCCCh
Q 048258 457 EQNGCNPDS 465 (504)
Q Consensus 457 ~~~~~~~~~ 465 (504)
.+. .|+.
T Consensus 476 ~~~--~~~~ 482 (514)
T 2gw1_A 476 ADL--ARTM 482 (514)
T ss_dssp HHH--CSSH
T ss_pred HHh--cccc
Confidence 885 4543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-26 Score=217.36 Aligned_cols=441 Identities=11% Similarity=-0.030 Sum_probs=329.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...+......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|+..++++.+.+ +.+...+..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778889999999999999999999874 789999999999999999999999999999875 3466789999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhH
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (504)
+...|++++|...|+++....+..+ .....++..+........+.+.+..+...+..|+...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFND-ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCG-GGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998876533 333334433333333333333332222111111111111111111111111111
Q ss_pred HHHHHHHHhcC---------CCccHHHHHHHHHHHHh---cCCcHHHHHHHHHHHh-----C--CC------CCCHHHHH
Q 048258 205 CGILDTFIKRG---------VKPRFSTYLLLMEALYK---AGRDVEGDRYLNHVFK-----D--RL------VSNVNSYN 259 (504)
Q Consensus 205 ~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~ 259 (504)
..+...+.... .+.+...+......+.. .|++++|...++++.+ . .+ +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11111111111 12235566666666665 8999999999999988 3 11 12356778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAH 339 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (504)
.+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++.+.+... .+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence 8889999999999999999999887543 78888999999999999999999999988643 36778889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 048258 340 RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFF 419 (504)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 419 (504)
++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999874 4467789999999999999999999999998763 4467788999999999999999999999
Q ss_pred HHHhCCCC-CC----cccHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 420 SMLTLGLR-PD----NFSYSALIKALIK---SGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 420 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
++.+.... ++ ...+..+..++.. .|++++|...++++.... +.+..++..++.++.+.|++++|.+.++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99874211 11 2278899999999 999999999999999863 446778899999999999999999999999
Q ss_pred HHcC
Q 048258 492 KERG 495 (504)
Q Consensus 492 ~~~~ 495 (504)
.+.+
T Consensus 476 ~~~~ 479 (514)
T 2gw1_A 476 ADLA 479 (514)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8865
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-24 Score=199.08 Aligned_cols=329 Identities=11% Similarity=0.041 Sum_probs=198.0
Q ss_pred HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048258 28 LAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (504)
.+...+..+...+ +.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455554443 5567778888888888888888888888887653 4567788888888888888888888888888
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcch---hHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC
Q 048258 108 ERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQK---LVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE 184 (504)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (504)
+.+. .+..++..+..++...|++++|.+.|+++....|. +. ..+..+...+..
T Consensus 88 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 88 QLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH----------------------
T ss_pred hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH----------------------
Confidence 7642 35667777888888888888888888888776554 33 344444332111
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048258 185 SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDC 264 (504)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (504)
..+......+...|++++|+..++.+.+.. +.+...+..++.++...|++++|...++.+.+..+. +..++..+..+
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 112223444556677777777777776653 445666777777777777777777777777665433 56777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH------------HHHHhcCCchHHHHHHHHHHHHCCCCcc----HHHH
Q 048258 265 FCKVNMMDRATEICREMRDRDIAPNLVTFNTL------------ISGHCKDAEVHKTRELLVMLLECGFKPD----KFTF 328 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 328 (504)
+...|++++|+..|+++...... +...+..+ ...+...|++++|...++.+.+.... + ...+
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~ 298 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSK 298 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHH
Confidence 77777777777777777655321 22333322 44445555555555555555443211 1 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 329 NSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQA 388 (504)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (504)
..+..++.+.|++++|+..++++.+.. +.+..+|..+..+|...|++++|...++++.+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444555555555555555555554432 22444555555555555555555555555554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-24 Score=207.69 Aligned_cols=435 Identities=9% Similarity=0.017 Sum_probs=304.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..|..+...+.+.|++++|+..|+++.+.+ +.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888899999999999999988776 6678888888999999999999999999988765 4567788888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--chhHHHHHHHHHhcCCChH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT--QKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 167 (504)
+...|++++|...|+.+ .. .|+.. ...+..+...+....|...++++....+.. ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 88999999999988633 22 12221 222334455556677888888876643211 1111122333444555555
Q ss_pred HHHHHHHHHhhCCCCCChhhH-HHHHHHHHc--------cCChhhHHHHHHHHHhcCCCcc------HHHHHHHHHHHHh
Q 048258 168 EAAAILRKMGDRGYLPESSTF-DYTVTCLVT--------GLDLNETCGILDTFIKRGVKPR------FSTYLLLMEALYK 232 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 232 (504)
.+...+...... .+....+ ..+...+.. .+++++|+.+++.+.+...... ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 555444333221 2222222 222222222 2478888888888887642211 2356677778888
Q ss_pred cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHH
Q 048258 233 AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTREL 312 (504)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (504)
.|++++|...++.+.+..+. ...+..+...+...|++++|+..++.+.+... .+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 89999999999998886544 67788888888899999999999988887643 3677888888888999999999999
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 048258 313 LVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR-- 390 (504)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 390 (504)
++.+.+... .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 333 ~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 998877542 355678888888889999999999999888763 4466788888889999999999999998886542
Q ss_pred ---CCCCHHhHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 391 ---ISPDIYTFNALIQSFCRM----------NKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 391 ---~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
.......+.....++... |++++|...|+++.+.. +.+...+..+..++...|++++|.+.++++.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111122244445666677 89999999999888763 3346678888888999999999999999988
Q ss_pred hc
Q 048258 458 QN 459 (504)
Q Consensus 458 ~~ 459 (504)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-24 Score=203.04 Aligned_cols=432 Identities=9% Similarity=0.013 Sum_probs=326.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
....+..+...+.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|++.|+++.+.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34667888899999999999999999999875 5578899999999999999999999999999875 346778899999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHc
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG------YLPESSTFDYTVTCLVT 197 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 197 (504)
++...|++++|.+.|+ .....+..... .+..+...+...+|...++.+.... ..|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGA----SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChH----HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 9999999999999996 44443332222 2334445566678999999886541 22332 33344445
Q ss_pred cCChhhHHHHHHHHHhcCCCccHH-HHHHHHHHH--------HhcCCcHHHHHHHHHHHhCCCCCCH-------HHHHHH
Q 048258 198 GLDLNETCGILDTFIKRGVKPRFS-TYLLLMEAL--------YKAGRDVEGDRYLNHVFKDRLVSNV-------NSYNMV 261 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l 261 (504)
..+.+.+...+...... .+... ....+...+ ...+++++|...++.+.+..+. +. .++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHH
Confidence 55555544433322221 22211 222222221 1235789999999999887654 32 246667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 048258 262 IDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRF 341 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (504)
...+...|++++|...++...+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 778889999999999999999874 457888899999999999999999999998764 34678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 342 EDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
++|+..++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999864 4467789999999999999999999999998863 445778899999999999999999999998
Q ss_pred HhCCCC-C----CcccHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048258 422 LTLGLR-P----DNFSYSALIKALIKS----------GRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHD 486 (504)
Q Consensus 422 ~~~~~~-~----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 486 (504)
.+.... + ....+.....++... |++++|...++++.+.. +.+..++..++.++...|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 874211 1 111133445667777 99999999999999863 4467889999999999999999999
Q ss_pred HHHHHHHcC
Q 048258 487 IVKTSKERG 495 (504)
Q Consensus 487 ~~~~~~~~~ 495 (504)
.++++.+..
T Consensus 484 ~~~~al~~~ 492 (537)
T 3fp2_A 484 LFEDSAILA 492 (537)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998865
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-24 Score=197.20 Aligned_cols=304 Identities=13% Similarity=0.060 Sum_probs=191.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+.++..+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4566778999999999999999999999998765 6689999999999999999999999999999875 4568899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCh---hhHHHHH------------HHHHhcCChHHHHHHHHHHHhcCCCcchh
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNE---ATVRSLV------------HGVFRCLDPHKAFELLIRFMEREPLTQKL 151 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (504)
..+|...|++++|.+.|+++.+.+. .+. ..+..+. ..+...|++++|.+.|+++....|. +..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH
Confidence 9999999999999999999998642 233 4444443 3366666677776666666665443 445
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHH-----
Q 048258 152 VCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLL----- 226 (504)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 226 (504)
++..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|+..++.+.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 56666666666666666666666665432 1245556666666666666666666666665542 2222222222
Q ss_pred -------HHHHHhcCCcHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 048258 227 -------MEALYKAGRDVEGDRYLNHVFKDRLVSN----VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNT 295 (504)
Q Consensus 227 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (504)
+..+...|++++|...|+.+.+..+. + ...+..+..++.+.|++++|+..++.+.+.. +.+..++..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 34444444444444444444433222 1 1233344444444444444444444443332 113344444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHH
Q 048258 296 LISGHCKDAEVHKTRELLVMLLE 318 (504)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~ 318 (504)
+..+|...|++++|...++.+.+
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-20 Score=169.38 Aligned_cols=333 Identities=9% Similarity=0.016 Sum_probs=206.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
|+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677888888999999999999999988765 5678888888899999999999999999988764 346778888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVC--PNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (504)
++...|++++|...|+++.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 888999999999999988876320 12333333311000 00111123334444444
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 167 SEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
++|.+.++++..... .+...+..+...+...|++++|+..++.+.+.. +.+...+..++..+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444443221 133444444444555555555555555544432 334445555555555555555555555555
Q ss_pred HhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhcCCchHHHH
Q 048258 247 FKDRLVSNVNSYN------------MVIDCFCKVNMMDRATEICREMRDRDIAPNL----VTFNTLISGHCKDAEVHKTR 310 (504)
Q Consensus 247 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 310 (504)
.+..+. +...+. .+...+.+.|++++|...++...+.... +. ..+..+...+...|++++|.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 544332 222221 2355677778888888888777765422 22 22445666777788888888
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 048258 311 ELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA 372 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (504)
..++...+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8888777653 3366777777778888888888888888887753 3345555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-19 Score=167.95 Aligned_cols=364 Identities=10% Similarity=-0.018 Sum_probs=187.7
Q ss_pred HHHHHHHhhhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCChhhHH
Q 048258 29 AYLKFQQMSVDQCKPDRFTYNILIHGICR----IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN----AKRVAEVF 100 (504)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 100 (504)
++..++...+. .++..+..+...|.. .+++++|+..|++..+.| ++..+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34445544442 356666666666666 667777777777766653 45556666666666 66677777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc----CCChHHHHHH
Q 048258 101 RVLEIMKERNVCPNEATVRSLVHGVFR----CLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN----NSMASEAAAI 172 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 172 (504)
+.|++..+.| ++..+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++.++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777766553 44555555555655 556666666666655543 23344444444443 4455555555
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 048258 173 LRKMGDRGYLPESSTFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFK 248 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (504)
|++..+.+ +...+..+...|.. .++.++|.+.+++..+.
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------------------- 216 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS---------------------------------- 216 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------------
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------------------------------
Confidence 55544432 33444444444444 44444444444444443
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCchHHHHHHHHHHHHCC
Q 048258 249 DRLVSNVNSYNMVIDCFCK----VNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK----DAEVHKTRELLVMLLECG 320 (504)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 320 (504)
+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .++.++|...|+...+.+
T Consensus 217 -~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 217 -G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp -T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred -C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 2 33344444444443 445555555555544432 23333344444443 455555555555554432
Q ss_pred CCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCC
Q 048258 321 FKPDKFTFNSMIDCLCRA-----HRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG---DVARSLRLFQKMQADRIS 392 (504)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~ 392 (504)
+...+..+...|... +++++|+..+++..+.+ +...+..+...|...| ++++|.+.|++..+.+
T Consensus 290 ---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-- 361 (490)
T 2xm6_A 290 ---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-- 361 (490)
T ss_dssp ---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--
Confidence 233344444444444 55555555555555542 3334444444444433 4555555555555542
Q ss_pred CCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 048258 393 PDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 393 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 460 (504)
+...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|...|++..+.+
T Consensus 362 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 362 -EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554 455555555555555543 33444555555554 455555666555555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-19 Score=167.02 Aligned_cols=350 Identities=13% Similarity=0.037 Sum_probs=235.7
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcH
Q 048258 9 STRLYNAVIDALVK----SNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR----IGVVDEALRLVKQMEGLGYAPNV 80 (504)
Q Consensus 9 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 80 (504)
++..+..+...|.. .++++.|+..|++..+.+ ++..+..+...|.. .+++++|++.|++..+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56677778888888 899999999999998864 67788889999998 899999999999999875 66
Q ss_pred HhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcchhH
Q 048258 81 YTYTILIDGFCN----AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR----CLDPHKAFELLIRFMEREPLTQKLV 152 (504)
Q Consensus 81 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
..+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888887 789999999999998875 66778888888887 789999999999998864 5677
Q ss_pred HHHHHHHHhc----CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHHHHH
Q 048258 153 CNTLLYRLSN----NSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFSTYL 224 (504)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (504)
+..+...|.. .++.++|.++|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7888888887 899999999999998764 55667777777775 678888888888877654 344555
Q ss_pred HHHHHHHh----cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHH
Q 048258 225 LLMEALYK----AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKV-----NMMDRATEICREMRDRDIAPNLVTFNT 295 (504)
Q Consensus 225 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (504)
.+...+.. .++.++|..+|++..+.+ +...+..+...+... +++++|+..|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 56666655 566666666666665543 344555555555544 55555555555555443 2333444
Q ss_pred HHHHHhcCC---chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048258 296 LISGHCKDA---EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR----AHRFEDALDCLSEMVEWGVPPNTITYNILIR 368 (504)
Q Consensus 296 l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (504)
+...|...| +.++|.+.+++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444443333 3444444444444432 33334444444443 344444444444444432 2333333444
Q ss_pred HHHh----cCCHHHHHHHHHHHHh
Q 048258 369 SLCA----IGDVARSLRLFQKMQA 388 (504)
Q Consensus 369 ~~~~----~g~~~~a~~~~~~~~~ 388 (504)
.|.. .+++++|...|++..+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4433 3444444444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-20 Score=165.68 Aligned_cols=342 Identities=12% Similarity=0.043 Sum_probs=213.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35567777777888888888888888877654 4456777777888888888888888888877763 235567777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC--cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPL--TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDL 201 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (504)
++...|++++|.+.+++.....|. .+...+..+..... ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777788888888888777776541 12222222221100 11233345667777888
Q ss_pred hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 202 NETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
++|++.++.+.+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888777764 445667777777777788888888877777766544 6677777777777777777777777777
Q ss_pred HhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-
Q 048258 282 RDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT- 360 (504)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 360 (504)
.+.... +...+..+ ..+. .......+...+.+.|++++|...++++.+.... +.
T Consensus 215 ~~~~~~-~~~~~~~~-----------------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 269 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHY-----------------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAE 269 (359)
T ss_dssp HHHCTT-CHHHHHHH-----------------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred HhhCcc-chHHHHHH-----------------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chH
Confidence 665321 22222111 0000 1111222344566667777777777766664311 22
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHH
Q 048258 361 ---ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSAL 436 (504)
Q Consensus 361 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l 436 (504)
..+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+. .|+ ...+..+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 346 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 123445566667777777777777766642 335556666677777777777777777777664 333 3334444
Q ss_pred HHHH
Q 048258 437 IKAL 440 (504)
Q Consensus 437 ~~~~ 440 (504)
..+.
T Consensus 347 ~~~~ 350 (359)
T 3ieg_A 347 EKAQ 350 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-19 Score=169.11 Aligned_cols=132 Identities=6% Similarity=0.002 Sum_probs=89.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
-|..+|..++. +.+.|+++.|..+|+++.+.. |.+...|...+..+.+.|++++|..+|+++... .|+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 35667777777 467788888888888888764 567777888888888888888888888888776 35766777666
Q ss_pred HHH-HhcCChhhHHH----HHHHHHHc-CCCC-ChhhHHHHHHHHHh---------cCChHHHHHHHHHHHh
Q 048258 88 DGF-CNAKRVAEVFR----VLEIMKER-NVCP-NEATVRSLVHGVFR---------CLDPHKAFELLIRFME 143 (504)
Q Consensus 88 ~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 143 (504)
... ...|++++|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++.+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 433 34566666654 66666543 3333 34556666655443 4666667777766666
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-19 Score=166.03 Aligned_cols=418 Identities=10% Similarity=0.012 Sum_probs=307.7
Q ss_pred HHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 048258 33 FQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC 112 (504)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 112 (504)
|++.++.+ |-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555444 668889999998 478999999999999999873 5678899999999999999999999999999873
Q ss_pred CChhhHHHHHHHH-HhcCChHHHHH----HHHHHHhc-CCC-cchhHHHHHHHHHhc---------CCChHHHHHHHHHH
Q 048258 113 PNEATVRSLVHGV-FRCLDPHKAFE----LLIRFMER-EPL-TQKLVCNTLLYRLSN---------NSMASEAAAILRKM 176 (504)
Q Consensus 113 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 176 (504)
|+...|..++... ...|+.+.|.+ +|++.+.. +.. .+...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777777533 45678777765 67766543 322 245677777766544 68899999999999
Q ss_pred hhCCCCCChhhHHHHHHHH-------------HccCChhhHHHHHHHHH------hcC---CCcc--------HHHHHHH
Q 048258 177 GDRGYLPESSTFDYTVTCL-------------VTGLDLNETCGILDTFI------KRG---VKPR--------FSTYLLL 226 (504)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l 226 (504)
......+....|....... ...+++..|..+++... +.. ++|+ ...+...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8832111123333322211 13467888888777632 221 2443 2345554
Q ss_pred HHHHHhc----CCc----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhC
Q 048258 227 MEALYKA----GRD----VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK-------VNMMD-------RATEICREMRDR 284 (504)
Q Consensus 227 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 284 (504)
+...... ++. ..+...|++++...+. +...|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4433322 232 3778899999887554 78888888888875 68987 999999999863
Q ss_pred CCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 048258 285 DIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD-KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363 (504)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (504)
-.+.+...|..++..+.+.|++++|..+|+++.+.... + ...|..++..+.+.|++++|..+|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 22336788999999999999999999999999986322 3 3588888888889999999999999999863 2233333
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC--cccHHHHHHH
Q 048258 364 NILIRS-LCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RPD--NFSYSALIKA 439 (504)
Q Consensus 364 ~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~ 439 (504)
...... +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 332222 346899999999999998763 34678899999999999999999999999998632 222 2367778888
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 048258 440 LIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 440 ~~~~g~~~~a~~~~~~~~~~ 459 (504)
....|+.+.+..+.+++.+.
T Consensus 473 e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-20 Score=165.57 Aligned_cols=273 Identities=7% Similarity=-0.046 Sum_probs=152.0
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 6 ISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
.+.++..+......+...|+++.|+.+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 34455556666666666666666666666666554 4445555556666666666666666666666543 334556666
Q ss_pred HHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 86 LIDGFCNAK-RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 86 l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
+...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|.+.+++.....+. +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 666666666 6666666666666543 223455666666666666666666666666665444 3334444555666666
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcC--------CCccHHHHHHHHHHHHhcCCc
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRG--------VKPRFSTYLLLMEALYKAGRD 236 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~ 236 (504)
++++|.+.+++...... .+...+..+...+...|++++|...++++.+.. .+....++..++..+...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 66666666666555421 234455555555555566666655555555431 012233444555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 237 VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
++|...++++.+..+. +...+..+..++...|++++|.+.+++..+.
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 5555555555444332 3444444555555555555555555554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-20 Score=163.43 Aligned_cols=293 Identities=11% Similarity=-0.005 Sum_probs=212.4
Q ss_pred CChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048258 183 PESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVI 262 (504)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (504)
.+...+......+...|++++|+++++.+.+.. +.+...+..++.++...|++++|...++++.+..+. +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 355566666777777777777777777777653 334555666667777778888888888877776544 566777777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 048258 263 DCFCKVN-MMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRF 341 (504)
Q Consensus 263 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (504)
..+...| ++++|...|++..+... .+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 7777888 78888888888776643 25667777777888888888888888887765322 345566677778888888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHhHHHHHHHHHccCCHHH
Q 048258 342 EDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR--------ISPDIYTFNALIQSFCRMNKIEK 413 (504)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 413 (504)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888888763 4466778888888888888888888888876531 13345678888888888889999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCCHH
Q 048258 414 AEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETL-VQQGRFE 482 (504)
Q Consensus 414 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 482 (504)
|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 998888888753 3356678888888888899999999888888742 33566777777777 3455543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-17 Score=161.01 Aligned_cols=419 Identities=15% Similarity=0.130 Sum_probs=291.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
|+.--....++|...|.+.+|+++++++...+ ++.+....+.++.+..+. +..+..++.++.... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 34444557788888888888888888887432 123456666677666665 556666666665522 2 2225
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (504)
...+...|.+++|..+|++... .......+ +-..+++++|.++.+++ ....+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 5667778888888888888631 11222222 22678888888888765 2467888888888899999
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 167 SEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
++|.+.|.+. -+...|..++.++.+.|++++|.+.+....+.. +++.....++.+|.+.+++++...+
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f---- 1189 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF---- 1189 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----
Confidence 9999888664 267778888888999999999999998877764 3333333588888888887753333
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH
Q 048258 247 FKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (504)
.+ .++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+.+. .+..
T Consensus 1190 I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1190 IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 22 235566667888888889999999988874 36888888888889999998888876 2667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFC 406 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (504)
+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|..+...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 8888888888888888888766542 2356667788889999999999999998887654 444557777777666
Q ss_pred cc--CCHHHHHHHHHHHHhCCCCC------CcccHHHHHHHHHhcCChhHHHHH-------------HHHHHhcCCCCCh
Q 048258 407 RM--NKIEKAEKAFFSMLTLGLRP------DNFSYSALIKALIKSGRFDEAKQT-------------FLSMEQNGCNPDS 465 (504)
Q Consensus 407 ~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~~~~~~~~~~~ 465 (504)
+. ++..++.++|..-.. ++| +...|..++..|.+.|+++.|... |+..... ..+.
T Consensus 1326 Ky~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~ 1401 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANV 1401 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccH
Confidence 53 345555555543332 222 355688888889999999988832 2222221 3466
Q ss_pred hhHHHHHHHHHhcC---------------CHHHHHHHHH
Q 048258 466 YTSNLILETLVQQG---------------RFEEAHDIVK 489 (504)
Q Consensus 466 ~~~~~l~~~~~~~g---------------~~~~a~~~~~ 489 (504)
..|...+..|...+ +++.+.+++.
T Consensus 1402 elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1402 ELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 77777777776666 6666666665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=164.56 Aligned_cols=304 Identities=13% Similarity=0.017 Sum_probs=171.1
Q ss_pred cCCChHHHHH-HHHHHhhCCCC-C--ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcH
Q 048258 162 NNSMASEAAA-ILRKMGDRGYL-P--ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 162 ~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
..|++++|.+ .+++....... | +...+..+...+...|++++|+..++++.+.. +.+..++..++.++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 66655433211 1 34567777778888888888888888888764 456677788888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
+|...++++.+..+. +..++..+..++...|++++|+..++++...... +...+..+... .. ..
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~~ 179 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------GA 179 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------hh
Confidence 888888888776644 6777888888888888888888888888776432 22222111000 00 00
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPP-NTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY 396 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (504)
.+ ...+..+. .+...|++++|+..++++.+..... +..++..+...+...|++++|...++++.+.. +.+..
T Consensus 180 ----~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 180 ----GL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ----cc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 00 00011111 1225555666666666655542111 34555556666666666666666666655542 23345
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----------Chh
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP----------DSY 466 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~ 466 (504)
.+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 55666666666666666666666665542 2234455566666666666666666666655421000 135
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
++..++.++...|++++|..++++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 566666666666666666666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-20 Score=166.43 Aligned_cols=231 Identities=12% Similarity=0.010 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 048258 258 YNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR 337 (504)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (504)
+..+...+.+.|++++|+..|+++.+..+ .+..++..+...+...|++++|...++.+.+.. +.+...+..+..++..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444321 133344444444444444444444444444332 1234444444445555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhH----------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHH
Q 048258 338 AHRFEDALDCLSEMVEWGVPPNTITY----------------NILIRSLCAIGDVARSLRLFQKMQADRISP-DIYTFNA 400 (504)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 400 (504)
.|++++|+..++++.+.... +...+ ..+...+ ..|++++|...++++.+..... +..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555555443211 11111 1233334 8899999999999998863111 4788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 048258 401 LIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGR 480 (504)
Q Consensus 401 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 480 (504)
+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..++.++.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999863 3456788999999999999999999999999863 4467789999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 048258 481 FEEAHDIVKTSKER 494 (504)
Q Consensus 481 ~~~a~~~~~~~~~~ 494 (504)
+++|...++++.+.
T Consensus 301 ~~~A~~~~~~al~~ 314 (368)
T 1fch_A 301 HREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-16 Score=154.23 Aligned_cols=387 Identities=12% Similarity=0.082 Sum_probs=292.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG--YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVR 119 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (504)
..++.--...+++|...|.+.+|+++++++.-.+ +..+...-+.++.+..+. +..+..+..++.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 3455556778889999999999999999998432 113445666677776666 446666665555422 1 34
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC
Q 048258 120 SLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGL 199 (504)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (504)
.+...+...|.+++|.++|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 47788889999999999999962 12222333332 6788999999988662 5788999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048258 200 DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICR 279 (504)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (504)
++++|++.|.+. .+...|..++.++.+.|++++|.+++....+.... +...+.++.+|.+.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e--~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc--ccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999663 47788999999999999999999999988876533 333345888999999988644442
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048258 280 EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359 (504)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (504)
. .++...+..+...|...|++++|...|... ..|..+..++.+.|++++|.+.+++. .+
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 2 335667778999999999999999999985 37899999999999999999999987 36
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 048258 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKA 439 (504)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (504)
..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++..+... +-....|+-+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 689999999999999999998877653 3466677799999999999999999998888653 2334567667777
Q ss_pred HHhc--CChhHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHH
Q 048258 440 LIKS--GRFDEAKQTFLSMEQNGCNP------DSYTSNLILETLVQQGRFEEAHDIV 488 (504)
Q Consensus 440 ~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 488 (504)
+.+. ++..++.+.|..-.. ++| +...|..+.-.|.+.|+++.|...+
T Consensus 1324 yaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 7664 334444444443222 333 4567899999999999999998443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-18 Score=153.60 Aligned_cols=283 Identities=11% Similarity=0.101 Sum_probs=124.6
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHH
Q 048258 21 VKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVF 100 (504)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 100 (504)
-+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..+++++...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 36678999999999983 3358999999999999999999999653 57778999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCC
Q 048258 101 RVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (504)
+.++...+. .+++.+...++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 45677888999999999999998877742 35568999999999999999999999976
Q ss_pred CCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHH
Q 048258 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNM 260 (504)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (504)
..|..++.++.+.|++++|.+.+.++ .++.++..++.+|...|+++.|...... +...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 47889999999999999999999887 2678899999999999999999654443 2234555567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC--CchHHHHHHHHHHHHCCCCc------cHHHHHHHH
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD--AEVHKTRELLVMLLECGFKP------DKFTFNSMI 332 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 332 (504)
++..|.+.|.+++|+.+++...... +.....|+-+.-+|++- ++..+.++.|.. +.+++| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 8888999999999999999887664 33556677776666653 333344443321 112222 345677777
Q ss_pred HHHHhcCCHHHHHHH
Q 048258 333 DCLCRAHRFEDALDC 347 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~ 347 (504)
..|...++++.|...
T Consensus 290 ~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhhchHHHHHHH
Confidence 778888888877663
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-19 Score=162.07 Aligned_cols=276 Identities=12% Similarity=-0.014 Sum_probs=150.4
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048258 185 SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDC 264 (504)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (504)
...+......+...|++++|+..++++.+.. +.+..++..++..+...|++++|...|+++.+..+. +..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3446666777777777777777777777653 445666777777777777777777777777665543 56666777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 048258 265 FCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDA 344 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (504)
+...|++++|+..++++.+.... +...+..+. .....+..+...+...|++++|
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHH
Confidence 77777777777777776654211 111111110 0111222334445555555555
Q ss_pred HHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 345 LDCLSEMVEWGVP-PNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 345 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
+..++++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++++
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544211 134455555555555556666665555555432 23445555566666666666666666666555
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCN-----------PDSYTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
.. +.+..++..+..+|...|++++|...++++.+.... .+..+|..+..++...|+.+.+.+..++
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 42 222445555666666666666666666665542100 0245566666667677777666666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-19 Score=159.15 Aligned_cols=267 Identities=7% Similarity=-0.073 Sum_probs=160.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555666666666666666666665543 3355566666666666666666666666666553 2245556666666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcc---------hhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCC-CChhhHHHHHHH
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQ---------KLVCNTLLYRLSNNSMASEAAAILRKMGDRGYL-PESSTFDYTVTC 194 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 194 (504)
+...|++++|.+.++++....|... ...+..+...+...|++++|.+.|+++...... ++...+..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 6666666666666666655433211 112223455666677777777777776654321 145566667777
Q ss_pred HHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048258 195 LVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRA 274 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 274 (504)
+...|++++|++.++++.+.. +.+..++..++.++...|++++|...++++.+..+. +..++..+..++...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 777777777777777776653 445667777777777777777777777777766543 566677777777777777777
Q ss_pred HHHHHHHHhCCCC-----------CChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 275 TEICREMRDRDIA-----------PNLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 275 ~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
...|++..+.... .+...|..+..++...|+.+.+..+...
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777776553211 1245677777777777777776665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-17 Score=153.86 Aligned_cols=385 Identities=11% Similarity=-0.015 Sum_probs=229.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC----
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGL--------GYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN---- 110 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 110 (504)
.....|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888899999999999998886542 112345678888888999999999998888776531
Q ss_pred --CC-CChhhHHHHHHHHHhc--CChHHHHHHHHHHHhcCCCcchhHHHHHHHH---HhcCCChHHHHHHHHHHhhCCCC
Q 048258 111 --VC-PNEATVRSLVHGVFRC--LDPHKAFELLIRFMEREPLTQKLVCNTLLYR---LSNNSMASEAAAILRKMGDRGYL 182 (504)
Q Consensus 111 --~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 182 (504)
.. ....++..+..++... +++++|.+.|++..+..|. +...+..+..+ +...++.++|++.+++..+....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 01 1234555555555443 4688888888888887765 33444433333 34456777788877777654321
Q ss_pred CChhhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHH
Q 048258 183 PESSTFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSY 258 (504)
Q Consensus 183 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (504)
+...+..+...+.. .+++++|.+.+++..... +.+..++..++..+...|++++|...+.++.+..+. +..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 34444444433333 456777888887777664 445667777788888888888888888888776554 55666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 048258 259 NMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRA 338 (504)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (504)
..+..+|...+... .... ...... .....+..+.|...++...+.. +.+...+..+...+...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~~~~~~------~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-ENGMYG------KRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------C------HHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-HHHHHH------HHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 66555543221100 0000 000000 0111233567777777776653 23455677778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 048258 339 HRFEDALDCLSEMVEWGVPPNTI--TYNILIR-SLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAE 415 (504)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 415 (504)
|++++|+..|++..+....+... .+..+.. .....|+.++|+..|++..+. .|+..... +....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHH
Confidence 88888888888888764332221 2222222 234678888898888888874 44433221 2234455
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 048258 416 KAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 460 (504)
+++++.++.. +.+..+|..+..+|...|++++|++.|++.++.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5666666653 4457788889999999999999999999988754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-17 Score=151.76 Aligned_cols=385 Identities=11% Similarity=-0.014 Sum_probs=237.5
Q ss_pred CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc-----C---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----
Q 048258 78 PNVYTYTILIDGFCNAKRVAEVFRVLEIMKER-----N---VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMERE---- 145 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 145 (504)
.....|+.+...+...|++++|++.|++..+. + .+....++..+..+|...|++++|...+++.....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888999999999999887642 1 11234567888888999999999998888876531
Q ss_pred -C--CcchhHHHHHHHHHhc--CCChHHHHHHHHHHhhCCCCCChhhHHHHHHH---HHccCChhhHHHHHHHHHhcCCC
Q 048258 146 -P--LTQKLVCNTLLYRLSN--NSMASEAAAILRKMGDRGYLPESSTFDYTVTC---LVTGLDLNETCGILDTFIKRGVK 217 (504)
Q Consensus 146 -~--~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 217 (504)
+ .....++.....++.. .+++++|.+.|++....... +...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1123445444444443 45678888888887765321 33344443333 344567777888887777764 3
Q ss_pred ccHHHHHHHHHHHHh----cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 048258 218 PRFSTYLLLMEALYK----AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTF 293 (504)
Q Consensus 218 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (504)
.+...+..+...+.. .+++++|.+.++++....+. +..++..+...+...|++++|+..+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 345555555544443 35667788888877776544 6677777788888888888888888887766422 44555
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
..+...|...+... .... ...........+.++.|...+++..+.. +.+..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 55555443211110 0000 0000001112234678888998888764 44667889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH--hHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 048258 374 GDVARSLRLFQKMQADRISPDIY--TFNALIQ-SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (504)
|++++|...|+++.+....+... .+..+.. .....|++++|+..|++.++. .|+...... ..+.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 99999999999998864333221 2233332 235789999999999999985 555432222 234456
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 451 QTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+++++....+ +.+..++..++.+|...|++++|.+.++++++.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6667766653 4577899999999999999999999999999874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-18 Score=151.47 Aligned_cols=279 Identities=8% Similarity=-0.076 Sum_probs=158.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+...+......+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456677778888888888888888887665 5567777778888888888888888888887764 446677777888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHH-HH-HHhcCCCh
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTL-LY-RLSNNSMA 166 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 166 (504)
.+...|++++|.+.++++.+.... +...+..+.... +.......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888888765321 222222220000 000000001 11 13344445
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 167 SEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
++|.+.++++..... .+...+..+...+...|++++|.+.++.+.+.. +.+...+..++..+...|++++|...++.+
T Consensus 155 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555443321 134445555555555555555555555555442 334455555555666666666666666665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------ChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 247 FKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-----------NLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
.+..+. +...+..+..++...|++++|...+++........ +..++..+..++...|+.++|..+++.
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 554432 45555556666666666666666666555442211 244555566666666666666665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-18 Score=149.96 Aligned_cols=278 Identities=10% Similarity=-0.017 Sum_probs=159.9
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCF 265 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (504)
..+......+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+..+. +...+..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 345555666666677777777777666653 335566666777777777777777777777665543 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHH--HHHhcCCHHH
Q 048258 266 CKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMID--CLCRAHRFED 343 (504)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~ 343 (504)
...|++++|+..++++...... +...+..+.... |+......+.. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 7777777777777777665322 222222220000 00111111111 2445556666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 344 ALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666665542 2345556666666666666666666666665542 33455666666666666666666666666665
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-----------DSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
.. +.+...+..+..++...|++++|.+.++++....... +..++..++.++...|++++|..++++.
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 42 2234556666666666677777777766666532110 3456666777777777777777766544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=145.90 Aligned_cols=269 Identities=14% Similarity=0.079 Sum_probs=137.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
+++.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.+++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 4456999999999999999999999965 357779999999999999999999988877764 55678899999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999988884 367789999999999999999999999976 47899999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 048258 168 EAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (504)
+|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.+++|..+++..+
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999998 2789999999999999999999655443 22344445678899999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------ChhhHHHHHHHHhcCCchHHHHHHH
Q 048258 248 KDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR-DIAP------NLVTFNTLISGHCKDAEVHKTRELL 313 (504)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (504)
... +.....|+-+..+|++- .+++..+.++....+ +++| +...|.-+...|...++++.|...+
T Consensus 235 ~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 776 44777888888777765 345444444433322 2333 5678889999999999999887643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-17 Score=141.81 Aligned_cols=253 Identities=13% Similarity=0.068 Sum_probs=191.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPD--RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
++-....|+++.|+..++.+... .|+ ......+.++|...|+++.|+..++.. .+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 46677789999999999887654 343 345566788999999999998866542 3677888888888899999
Q ss_pred ChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH
Q 048258 95 RVAEVFRVLEIMKERNVCP-NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL 173 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (504)
+.++|++.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998776434 455677777888999999999998887 246677888888899999999999999
Q ss_pred HHHhhCCCCCChhhH---HHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 174 RKMGDRGYLPESSTF---DYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 174 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
+++.... |+.... ...+..+...|++++|..+|+++.+. .+.+...+..++.++.+.|++++|...+++++...
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9887753 443211 12233444557888888888888877 35677778888888888888888888888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 048258 251 LVSNVNSYNMVIDCFCKVNMMDR-ATEICREMRDRD 285 (504)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 285 (504)
+. ++.++..++..+...|+.++ +.++++++.+..
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 55 77777777877878887765 567777777663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=143.55 Aligned_cols=274 Identities=11% Similarity=0.046 Sum_probs=212.4
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVKPR--FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
++-....|++..|+...+.+... .|+ ......+.++|...|+++.|...++. ...|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45566789999999998876554 343 34557778999999999999876644 23456778888899999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 270 MMDRATEICREMRDRDIAP-NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCL 348 (504)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (504)
+.++|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876434 556677777899999999999999987 457888999999999999999999999
Q ss_pred HHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 349 SEMVEWGVPPNTITY---NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 349 ~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...|+++++..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999863 443211 22334444568999999999999987 36678899999999999999999999999999863
Q ss_pred CCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048258 426 LRPDNFSYSALIKALIKSGRFDE-AKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHD 486 (504)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 486 (504)
+-+..++..++..+...|+.++ +.++++++.+. .|+..... ....+.+.++++..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~---d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIK---EYRAKENDFDRLVL 286 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHH---HHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHH---HHHHHHHHHHHHHH
Confidence 3357788899999999999876 57899999884 56544322 23444455555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-16 Score=145.51 Aligned_cols=306 Identities=12% Similarity=0.026 Sum_probs=170.9
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh---hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDL---NETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (504)
+.++|...|++....|. ...+..+...|...+.. ..+.+.+......| +......+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 34455555555444331 12333444444433322 22344444444333 23445555666666665544444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----CchHHHHHHHH
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFCKVN---MMDRATEICREMRDRDIAPNLVTFNTLISGHCKD----AEVHKTRELLV 314 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 314 (504)
....+.+.-...++..+..+...|...| +.++|++.|++..+.|.. +...+..+...|... +++++|...|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3333322212223336666777777777 777777777777776532 444445555555543 57777777777
Q ss_pred HHHHCCCCccHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 048258 315 MLLECGFKPDKFTFNSMIDC-L--CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG-----DVARSLRLFQKM 386 (504)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~ 386 (504)
... . -++..+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++|...|++.
T Consensus 242 ~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 766 2 244455555554 3 35677788888888777764 5556666666665 44 778888887777
Q ss_pred HhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 048258 387 QADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 458 (504)
. . .+......|...|.. ..++++|..+|++..+.| +......+...|.. ..++++|..+++...+
T Consensus 314 a-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 6 3 255566666666654 337788888888877765 33445556666653 3467788888888777
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 459 NGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.|. ++.......+......++..+|.++.++..+
T Consensus 387 ~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 387 QDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 652 2222222222222233455666666666544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=148.07 Aligned_cols=347 Identities=9% Similarity=-0.077 Sum_probs=159.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVV---DEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
.+...+.+.|++++|+..|++..+.+ ++.++..+...|...|+. ++|+.+|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677778888888888888887665 334455566666667777 7888888887753 5556666666444
Q ss_pred hcC-----ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 92 NAK-----RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHK---AFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 92 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
..+ ++++|...|++..+.|. ...+..+...|...+..++ +.+.+......+ ....+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 444 67788888888877653 2355566666665544332 333333332222 223334444444444
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC---CcHHHH
Q 048258 164 SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAG---RDVEGD 240 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~ 240 (504)
+.++++... ...+.+.-...++..+..+...|...| +.++|.
T Consensus 155 ~~~~~~~~~-----------------------------------a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 155 GTYDQHLDD-----------------------------------VERICKAALNTTDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp TCGGGGHHH-----------------------------------HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcccCHHH-----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHH
Confidence 433222222 111111111111224444444444444 445555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--hcCCchHHHHHHH
Q 048258 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKV----NMMDRATEICREMRDRDIAPNLVTFNTLISG-H--CKDAEVHKTRELL 313 (504)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~ 313 (504)
+.|++..+.++. +...+..+...|... +++++|+..|++.. .| +...+..+... + ...+++++|...|
T Consensus 200 ~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 200 KQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 555555544432 333333344444332 45555555555554 22 33344444443 2 3355555666666
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 048258 314 VMLLECGFKPDKFTFNSMIDCLCRAH-----RFEDALDCLSEMVEWGVPPNTITYNILIRSLCA----IGDVARSLRLFQ 384 (504)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 384 (504)
++..+.| +...+..+...|. .| ++++|+..|++.. . -+...+..+...|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 5555543 3444444444444 33 5666666666555 2 244445555555544 225666666666
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 048258 385 KMQADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 425 (504)
+..+.| +......|...|.. ..++++|..+|+...+.|
T Consensus 347 ~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 347 TAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 665544 22333444444442 335666666666666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-16 Score=127.85 Aligned_cols=198 Identities=14% Similarity=0.006 Sum_probs=122.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
|+++..+..+...+.+.|++++|+..|+++.+.+ |.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677778888888888888888888888888765 6677788888888888888888888888887764 4466777777
Q ss_pred HHHHHhc-----------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHH
Q 048258 87 IDGFCNA-----------KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNT 155 (504)
Q Consensus 87 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (504)
..++... |++++|+..|++..+..+ .+...+..+..++...|++++|.+.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 667777776666666532 244555666666666666666666666666554 34555555
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 048258 156 LLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDT 210 (504)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (504)
+..++...|++++|...|++..+... .+...+..+...+...|++++|+..+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55556666666666666665554321 1334444445555555555555554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-13 Score=128.47 Aligned_cols=427 Identities=7% Similarity=-0.027 Sum_probs=268.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCcHHh
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV---VDEALRLVKQMEGLG-YAPNVYT 82 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~ 82 (504)
+-|..+|..++..+.+.++++.+..+|+++...- |.....|...+..-.+.|+ ++.+..+|++..... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4577889999999999999999999999998764 7778888888888888888 999999999998763 1378888
Q ss_pred HHHHHHHHHhcCCh--------hhHHHHHHHHHHc-CC-CCC-hhhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRV--------AEVFRVLEIMKER-NV-CPN-EATVRSLVHGVFR---------CLDPHKAFELLIRFM 142 (504)
Q Consensus 83 ~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 142 (504)
|...+....+.++. +.+.++|+..... |. .++ ...|...+..... .++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766555443 3345778877653 54 443 4567666655432 345677888888888
Q ss_pred hcCCCcchhHHHHHHHHHhc-------------CCChHHHHHHHHHHhh--CCC---CCC--------------------
Q 048258 143 EREPLTQKLVCNTLLYRLSN-------------NSMASEAAAILRKMGD--RGY---LPE-------------------- 184 (504)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~--~~~---~~~-------------------- 184 (504)
......-..+|......-.. ...++.|...+.++.. .++ .|.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 64222222344322211111 1122333444443211 011 010
Q ss_pred hhhHHHHHHHHHccC-------ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHH-HHHHHHHhCCCCCCHH
Q 048258 185 SSTFDYTVTCLVTGL-------DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD-RYLNHVFKDRLVSNVN 256 (504)
Q Consensus 185 ~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 256 (504)
...|...+..--..+ ....+..+|++++.. .+.....+...+..+...|+.++|. .+|++.....+ .+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHH
Confidence 022333333222221 123345667777765 3556777888888788888888886 88888876543 3666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------hhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDRD---------IAPN------------LVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
.+...+....+.|++++|.++|+.+.... ..|+ ...|...+....+.|..+.|..+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67777777778888888888888776531 0121 23566666666777788888888888
Q ss_pred HHHCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 048258 316 LLECGFKPDKFTFNSMIDCLCRA-HRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISP- 393 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~- 393 (504)
+.+.........|...+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++.......+
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 87651111233333333333333 4478888888888775 44466666777777777888888888888887753211
Q ss_pred -CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 048258 394 -DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKA 439 (504)
Q Consensus 394 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (504)
....|...+..-...|+.+.+..+.+++.+. .|+......+++-
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 3446777777777788888888888888875 4554444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-15 Score=130.67 Aligned_cols=224 Identities=9% Similarity=0.009 Sum_probs=126.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCc----HHhH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APN----VYTY 83 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 83 (504)
+..|..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|+..+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556677777777777777777777777665 5667777777777777777777777777665421 011 4566
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
..+...+...|++++|...|+++.+.. |+. ..+...|++++|.+.+++.....+. ....+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 677777777777777777777777652 332 2344556666666666666554332 334455555555555
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHH
Q 048258 164 SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYL 243 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (504)
|++++|...+++...... .+...+..+..++...|++++|+..++...+.. +.+...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555544321 133344444444444444444444444444432 223334444444444444444444444
Q ss_pred HHHH
Q 048258 244 NHVF 247 (504)
Q Consensus 244 ~~~~ 247 (504)
+.+.
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-15 Score=129.69 Aligned_cols=225 Identities=12% Similarity=0.062 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhH
Q 048258 220 FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIA--PN----LVTF 293 (504)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 293 (504)
...+..++..+...|++++|...++.+.+.. .+...+..+..++...|++++|+..+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556667777777777777777777776665 46666777777777777777777777766554211 11 3555
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
..+...+...|++++|...++.+.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 66666666666666666666666553 2332 23444555666666666665542 22344555566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 048258 374 GDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666666665542 3345555666666666666666666666665542 223445555566666666666666666
Q ss_pred HHHHh
Q 048258 454 LSMEQ 458 (504)
Q Consensus 454 ~~~~~ 458 (504)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=159.61 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhh---hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMS---VDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
..+|+++|.+|++.|++++|..+|+.|. ..|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4579999999999999999999998875 4478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 87 IDGFCNAKRV-AEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 87 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999985 7899999999999999999999988865444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=157.86 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=95.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 048258 322 KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVE---WGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTF 398 (504)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 398 (504)
..-..+|+++|++|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456788888888888888888888877653 467788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 399 NALIQSFCRMNK-IEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 399 ~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 888888888876 46778888888888888888888877754443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=126.12 Aligned_cols=207 Identities=15% Similarity=0.085 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048258 219 RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLIS 298 (504)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (504)
+...+..+...+...|++++|...|+++++..+. +...+..+..++.+.|++++|+..+++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3444445555555555555555555555544433 4445555555555555555555555555544321 3344444444
Q ss_pred HHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 299 GHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 378 (504)
.+...+. .. .. .....|++++|+..+++..+.. +.+...+..+..++...|++++
T Consensus 82 ~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 82 AYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHH
Confidence 4444300 00 00 0001144444444444444432 2233344444444444444444
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 048258 379 SLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLS 455 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (504)
|+..|+++.+.. .+...+..+..++...|++++|...|+++++.. +.+...+..+..++...|++++|+..+++
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444444433 344444444444444444444444444444431 11233344444444444555554444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-15 Score=127.67 Aligned_cols=200 Identities=10% Similarity=-0.021 Sum_probs=116.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--VYTYTILI 87 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 87 (504)
+..+......+...|+++.|+..|+++.+.. +.+...+..+...+...|++++|++.+++..+.+..++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455566677777777888887777777664 44555677777777777777777777777776321111 22366677
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
..+...|++++|++.|++..+... .+..++..+...+...|++++|.+.+++.....|. +...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776532 24456666666666777777777666666655443 3344444442222333566
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC---hhhHHHHHHHHHh
Q 048258 168 EAAAILRKMGDRGYLPESSTFDYTVTCLVTGLD---LNETCGILDTFIK 213 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 213 (504)
+|.+.|++..+.... +...+..+...+...++ +++|...+++..+
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 666666555543211 23334444444444444 4444444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-15 Score=131.35 Aligned_cols=230 Identities=7% Similarity=-0.021 Sum_probs=160.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV-VDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
...|..+...+.+.|++++|+..|+++.+.+ +.+..+|+.+..++...|+ +++|+..|+++.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3557777788888888888888888888775 5577888888888888886 888888888888765 446778888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc-CCChH
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN-NSMAS 167 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 167 (504)
++...|++++|+..|+++.+.+. -+...|..+..++...|++++|++.+++++...|. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888887753 36677888888888888888888888888887765 66677777777777 55546
Q ss_pred HH-----HHHHHHHhhCCCCCChhhHHHHHHHHHccC--ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC------
Q 048258 168 EA-----AAILRKMGDRGYLPESSTFDYTVTCLVTGL--DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAG------ 234 (504)
Q Consensus 168 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 234 (504)
+| ++.|++....... +...|..+...+...| ++++|++.+..+ +. .+.+...+..++.++.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 3666666554221 4445555555565555 456666666555 22 2334455555555555543
Q ss_pred ---CcHHHHHHHHHH
Q 048258 235 ---RDVEGDRYLNHV 246 (504)
Q Consensus 235 ---~~~~a~~~~~~~ 246 (504)
..++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 135555555555
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-13 Score=126.09 Aligned_cols=152 Identities=11% Similarity=0.026 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC---hhhHHHH
Q 048258 26 IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR---VAEVFRV 102 (504)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~ 102 (504)
..+.+..|++.+..+ +.|..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445566677777666 779999999999999999999999999999987 46678889998888888888 9999999
Q ss_pred HHHHHHcC-CCCChhhHHHHHHHHHhcCCh--------HHHHHHHHHHHhc-CC-Cc-chhHHHHHHHHHhc--------
Q 048258 103 LEIMKERN-VCPNEATVRSLVHGVFRCLDP--------HKAFELLIRFMER-EP-LT-QKLVCNTLLYRLSN-------- 162 (504)
Q Consensus 103 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~~-------- 162 (504)
|++..... ..|+...|...+....+.++. +...++|+..+.. |. .+ ....|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99999874 137888888888776666554 3344777776653 33 22 34577777765432
Q ss_pred -CCChHHHHHHHHHHhhC
Q 048258 163 -NSMASEAAAILRKMGDR 179 (504)
Q Consensus 163 -~~~~~~a~~~~~~~~~~ 179 (504)
+++.+.+..+|+..+..
T Consensus 206 eq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHhHHHHHHHHHHHHHhC
Confidence 34567788999998863
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-14 Score=121.04 Aligned_cols=224 Identities=11% Similarity=0.024 Sum_probs=164.9
Q ss_pred cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 048258 219 RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK----VNMMDRATEICREMRDRDIAPNLVTFN 294 (504)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (504)
++.++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677777788888888888888888887732 55667777777777 888888888888877764 566777
Q ss_pred HHHHHHhc----CCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 048258 295 TLISGHCK----DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR----AHRFEDALDCLSEMVEWGVPPNTITYNIL 366 (504)
Q Consensus 295 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (504)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777764 56667777777777 778888888888777754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 048258 367 IRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIK 438 (504)
Q Consensus 367 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 438 (504)
...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777776 778888888888777653 45566677777777 778888888887777753 2455666777
Q ss_pred HHHh----cCChhHHHHHHHHHHhcC
Q 048258 439 ALIK----SGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 439 ~~~~----~g~~~~a~~~~~~~~~~~ 460 (504)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 777788888887777754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-14 Score=124.40 Aligned_cols=237 Identities=8% Similarity=-0.012 Sum_probs=180.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPN--EATVRSLV 122 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 122 (504)
+..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.+.+..++ ...+..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667788889999999999999998874 34566888888999999999999999999988432122 22478888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN 202 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (504)
..+...|++++|.+.|++.....|. +..++..+...+...|++++|...|++..... +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987765 56788888899999999999999999988762 224556666663444455899
Q ss_pred hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhCCC-CCC------HHHHHHHHHHHHhcCCHH
Q 048258 203 ETCGILDTFIKRGVKPRFSTYLLLMEALYKAGR---DVEGDRYLNHVFKDRL-VSN------VNSYNMVIDCFCKVNMMD 272 (504)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~~~~~ 272 (504)
+|++.++.+.+.. +.+...+..+...+...++ +++|...++++.+... .|+ ..++..+...+...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999998888864 4446777778888888787 7778888887765421 112 246667777888888888
Q ss_pred HHHHHHHHHHhCC
Q 048258 273 RATEICREMRDRD 285 (504)
Q Consensus 273 ~a~~~~~~~~~~~ 285 (504)
+|.+.|++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 8888888887764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-13 Score=118.75 Aligned_cols=224 Identities=11% Similarity=-0.023 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCchHHHHHHHHHHHHCCCCccHHHHH
Q 048258 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK----DAEVHKTRELLVMLLECGFKPDKFTFN 329 (504)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (504)
++.++..+...+...|++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444555555555555666655555555522 33445555555555 555555655555555543 444555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048258 330 SMIDCLCR----AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNAL 401 (504)
Q Consensus 330 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (504)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555566665555555542 44455555555555 555566665555555543 33444455
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048258 402 IQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQNGCNPDSYTSNLILE 473 (504)
Q Consensus 402 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 473 (504)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555554 555566665555555542 23444555555555 555556665555555532 1444555555
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 048258 474 TLVQ----QGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 474 ~~~~----~g~~~~a~~~~~~~~~~~ 495 (504)
+|.. .+++++|.++++++.+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 555555655555555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-14 Score=116.97 Aligned_cols=203 Identities=9% Similarity=-0.035 Sum_probs=121.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.++..|..+...+...|+++.|+..|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 345566667777777777777777777776654 4456667777777777777777777777776653 33556666677
Q ss_pred HHHHhc-CChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCC
Q 048258 88 DGFCNA-KRVAEVFRVLEIMKERNVCPN-EATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM 165 (504)
Q Consensus 88 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (504)
..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|.+.+++.....+. +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence 777777 777777777777766221222 345566666666666666666666666655443 34445555555555566
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHh
Q 048258 166 ASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIK 213 (504)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (504)
+++|...+++........+...+..+...+...|+.+.+...++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666665555554432212333444444444445555555555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-15 Score=127.19 Aligned_cols=246 Identities=9% Similarity=-0.009 Sum_probs=134.1
Q ss_pred cCChhhHHHHHHHHHhcCC---CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048258 198 GLDLNETCGILDTFIKRGV---KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRA 274 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 274 (504)
.|++++|++.++.+.+... +.+...+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666555421 113455666666666677777777777666665443 566666666677777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048258 275 TEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW 354 (504)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (504)
+..|++..+..+ .+..++..+...+...|++++|...++.+.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777776666532 245566666666666666666666666665542 22222233333445556666777766665554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc
Q 048258 355 GVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRIS---PDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF 431 (504)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 431 (504)
. +++...+ .++..+...++.++|...++++...... .+...+..+..+|...|++++|...|+++.+. .|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 2 2233333 3455555566666666666666543110 01345555666666666666666666666653 2321
Q ss_pred cHHHHHHHHHhcCChhHHHHHH
Q 048258 432 SYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222334445555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-14 Score=119.44 Aligned_cols=203 Identities=12% Similarity=-0.010 Sum_probs=140.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4556666777777777777777777776653 34566677777777777777777777777766532 355666677777
Q ss_pred HHhcCChHHHHHHHHHHHh--cCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 048258 125 VFRCLDPHKAFELLIRFME--REPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN 202 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (504)
+...|++++|.+.++++.. ..+ .....+..+...+...|++++|.+.+++...... .+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP-ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777766 222 2445666677777777777777777777765432 24566777777777778888
Q ss_pred hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 048258 203 ETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (504)
+|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 8888887777653 445666777777777888888888888887766543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-14 Score=124.66 Aligned_cols=228 Identities=11% Similarity=0.034 Sum_probs=125.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCC-hHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 048258 117 TVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM-ASEAAAILRKMGDRGYLPESSTFDYTVTCL 195 (504)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (504)
.+..+..++...|++++|++.+++++...|. +..+|+.+..++...|+ +++|+..|++....... +...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4444555555566666666666666655544 44555555555555564 66666666665554222 444555555555
Q ss_pred HccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 048258 196 VTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK-VNMMDRA 274 (504)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 274 (504)
...|++++|+..+++++... +.+...+..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 55666666666666665553 334556666666666666666666666666665544 55566666666655 4443444
Q ss_pred -----HHHHHHHHhCCCCCChhhHHHHHHHHhcCC--chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC--------
Q 048258 275 -----TEICREMRDRDIAPNLVTFNTLISGHCKDA--EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAH-------- 339 (504)
Q Consensus 275 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 339 (504)
+..+++.....+. +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 3555555554322 4455555555555555 455666555555 22 2234455555555555542
Q ss_pred -CHHHHHHHHHHH
Q 048258 340 -RFEDALDCLSEM 351 (504)
Q Consensus 340 -~~~~a~~~~~~~ 351 (504)
..++|+.+++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 135566666665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=123.29 Aligned_cols=202 Identities=11% Similarity=0.042 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..|..+...+...|+++.|...|+++.+.. +.+...+..+...+...|++++|+..++++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3444455555555555555555555555443 3345555555555555555555555555555442 2244455555555
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++....+.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------------- 157 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---------------------- 157 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT----------------------
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc----------------------
Confidence 555555555555555555442 123444444555555555555555555554444332
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 170 AAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
+...+..+...+...|++++|+..++.+.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 158 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 158 --------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp --------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 33344444455555555555555555554442 233445555556666666666666666666554
Q ss_pred CC
Q 048258 250 RL 251 (504)
Q Consensus 250 ~~ 251 (504)
.+
T Consensus 223 ~p 224 (243)
T 2q7f_A 223 QP 224 (243)
T ss_dssp CT
T ss_pred Cc
Confidence 43
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-13 Score=117.08 Aligned_cols=199 Identities=9% Similarity=0.010 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (504)
..+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 44555555555566666666666555554332 445555555555566666666666655554422 1344444455555
Q ss_pred hcCCchHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048258 301 CKDAEVHKTRELLVMLLECGFKP-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARS 379 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 379 (504)
...|++++|.+.++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555544411112 33344444445555555555555555554432 22344444455555555555555
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 380 LRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555544431 22333444444444455555555555555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=124.62 Aligned_cols=224 Identities=9% Similarity=-0.007 Sum_probs=132.1
Q ss_pred HHhcCCHHHHHHHHHHhhhCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQC---KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
+...|++++|+..|+++.+... +.+..++..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3455777888888887776531 1245567777777778888888888888877664 34567777777777778888
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKM 176 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (504)
++|...|+++.+.. +.+..++..+..++...|++++|.+.++++....|... .....+..+...|++++|...+.+.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--FRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888777763 23456677777777777777777777777776655422 1222223334456666666666555
Q ss_pred hhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCc---cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 177 GDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKP---RFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
.... |+......++..+...++.++|+..++......... +...+..++..+...|++++|...++++...
T Consensus 171 ~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS--DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 4432 122222234445555555555655555554431100 1233444444444444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-14 Score=120.63 Aligned_cols=211 Identities=9% Similarity=0.001 Sum_probs=129.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555555666666666666666665543 3345555555666666666666666666655542 1233444444444
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhH
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (504)
+...|++++|.+.++++....+ .+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~------------------------------------~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM------------------------------------ENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC------------------------------------CSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC------------------------------------CCHHHHHHHHHHHHHhccHHHH
Confidence 4445555555444444443322 2445566667777777788888
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
...++++.+.. +.+...+..++..+...|++++|...++.+.+..+. +...+..+..++...|++++|...++++.+.
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88887777663 456788899999999999999999999999987654 7788999999999999999999999999887
Q ss_pred CCCCChhhHHHH
Q 048258 285 DIAPNLVTFNTL 296 (504)
Q Consensus 285 ~~~~~~~~~~~l 296 (504)
... +...+..+
T Consensus 223 ~p~-~~~~~~~~ 233 (243)
T 2q7f_A 223 QPD-HMLALHAK 233 (243)
T ss_dssp CTT-CHHHHHHH
T ss_pred Ccc-hHHHHHHH
Confidence 432 44444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-13 Score=112.70 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (504)
..+..++..+...|++++|.+.++.+.+..+. +...+..+...+...|++++|.+.+++..+... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 33444444444445555555544444443322 344444444444445555555555544444321 1333344444444
Q ss_pred hcC-CchHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 301 CKD-AEVHKTRELLVMLLECGFKP-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 301 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 378 (504)
... |++++|...++.+.+.+..| +...+..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 444 44444444444444311111 12333334444444444444444444444331 1123333344444444444444
Q ss_pred HHHHHHHHH
Q 048258 379 SLRLFQKMQ 387 (504)
Q Consensus 379 a~~~~~~~~ 387 (504)
|...++++.
T Consensus 166 A~~~~~~~~ 174 (225)
T 2vq2_A 166 ADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=133.83 Aligned_cols=269 Identities=12% Similarity=0.054 Sum_probs=150.6
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCChhhHHH
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDRLVSNV----NSYNMVIDCFCKVNMMDRATEICREMRDR----D-IAPNLVTFNT 295 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 295 (504)
.+...+...|++++|...++++.+..+. +. ..+..+...+...|++++|+..+++..+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344444444444444444444443322 11 23444444455555555555555444322 0 0112234444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHC----C-CCccHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHH
Q 048258 296 LISGHCKDAEVHKTRELLVMLLEC----G-FKPDKFTFNSMIDCLCRAHR-----------------FEDALDCLSEMVE 353 (504)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~ 353 (504)
+...|...|++++|...+++..+. + .+.....+..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 455555555555555555544322 0 01123345555566666666 6666666665543
Q ss_pred C----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 354 W----GV-PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRIS-PD----IYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 354 ~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
. +. +....++..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|...++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 11 112235666777777788888888877777553100 01 22667777778888888888888877765
Q ss_pred CCCC-C----CcccHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 424 LGLR-P----DNFSYSALIKALIKSGRFDEAKQTFLSMEQN----GCNP-DSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 424 ~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.... . ...++..+...+...|++++|...+++.... +..+ ...++..++.++...|++++|.++++++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3100 0 1345667777888888888888888877642 1011 134677788888888888888888888765
Q ss_pred c
Q 048258 494 R 494 (504)
Q Consensus 494 ~ 494 (504)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=133.01 Aligned_cols=133 Identities=7% Similarity=-0.077 Sum_probs=75.3
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHHhcCC---C--ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-----CCHH
Q 048258 187 TFDYTVTCLVTGLDLNETCGILDTFIKRGV---K--PRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-----SNVN 256 (504)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 256 (504)
.+..+...+...|++++|++.+++..+... . .....+..+...+...|++++|...++++...... ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555556666666665555544310 0 01225556666666666666666666665543211 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDRDI-----APNLVTFNTLISGHCKDAEVHKTRELLVMLLEC 319 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (504)
++..+...+...|++++|...+++...... .....++..+...|...|++++|...+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 566666677777777777777766654310 111335666667777777777777777776654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-14 Score=130.46 Aligned_cols=279 Identities=10% Similarity=-0.071 Sum_probs=158.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD----RFTYNILIHGICRIGVVDEALRLVKQMEGL----GYAP 78 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~ 78 (504)
.+....+......+...|++++|+..|+++.+.. +.+ ..++..+...+...|++++|+..+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445566777888899999999999999988764 333 356778888888999999999988876432 2112
Q ss_pred -cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------hH
Q 048258 79 -NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC-PN----EATVRSLVHGVFRCLD--------------------PH 132 (504)
Q Consensus 79 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 132 (504)
...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456777888888889999999888887654100 11 2356677777777788 77
Q ss_pred HHHHHHHHHHhcC-----CCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHccCChhhHHH
Q 048258 133 KAFELLIRFMERE-----PLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGY-LPESSTFDYTVTCLVTGLDLNETCG 206 (504)
Q Consensus 133 ~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (504)
+|.+.+++..... ......++..+...+...|++++|...+++...... .++.
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------- 223 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------- 223 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------------------
Confidence 7777666654321 011123444555555556666666655555432100 0010
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 207 ILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-----SNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
.....++..+...+...|++++|...+++....... ....++..+...+...|++++|...+++.
T Consensus 224 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 224 ----------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 001123444444444555555555544444322110 01234445555555555555555555554
Q ss_pred HhCCCC-C----ChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 282 RDRDIA-P----NLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 282 ~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
.+.... + ...++..+...|...|++++|...++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 332100 0 13344555555555566666655555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-12 Score=113.19 Aligned_cols=183 Identities=11% Similarity=0.025 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHH
Q 048258 307 HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN-TI-TYNILIRSLCAIGDVARSLRLFQ 384 (504)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~ 384 (504)
++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444444444444111123334444444444444555555555544442 121 21 44444444444455555555555
Q ss_pred HHHhCCCCCCHHhHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CC
Q 048258 385 KMQADRISPDIYTFNALIQSFC-RMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNG-CN 462 (504)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 462 (504)
++.+.. +++...|...+.... ..|++++|..+|+++++.. +.+...|..++..+.+.|++++|+.+|+++.... ++
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 444432 122222222222111 1345555555555444431 1123344444444444455555555555554431 22
Q ss_pred C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 463 P--DSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 463 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 123444444444444555555555554444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-14 Score=128.79 Aligned_cols=276 Identities=12% Similarity=0.075 Sum_probs=161.4
Q ss_pred ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC----C-CCCH
Q 048258 184 ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR---FSTYLLLMEALYKAGRDVEGDRYLNHVFKDR----L-VSNV 255 (504)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~ 255 (504)
....+......+...|++++|+..++++.+...... ...+..+...+...|++++|...++++.... . ....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 444556666777778888888888887777632211 3456677777777788888887777765321 1 1124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHhcCCc--------------------hHHHH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIA-PN----LVTFNTLISGHCKDAE--------------------VHKTR 310 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 310 (504)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666677777777777777777777665321 11 2255566666666777 66666
Q ss_pred HHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhcCCHHHHH
Q 048258 311 ELLVMLLEC----GFK-PDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-PPN----TITYNILIRSLCAIGDVARSL 380 (504)
Q Consensus 311 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~ 380 (504)
..+....+. +.. ....++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666654321 111 1123455566666666777777777766654210 011 125556666666677777777
Q ss_pred HHHHHHHhC----CCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----cccHHHHHHHHHhcCChhHHH
Q 048258 381 RLFQKMQAD----RISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RPD----NFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 381 ~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~ 450 (504)
..+++..+. +..+. ..++..+...|...|++++|...++++.+... .++ ..++..+..++...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666542 10000 33555666666666777777666666654210 011 334555666666666666676
Q ss_pred HHHHHHHhc
Q 048258 451 QTFLSMEQN 459 (504)
Q Consensus 451 ~~~~~~~~~ 459 (504)
..+++..+.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666663
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=123.54 Aligned_cols=269 Identities=11% Similarity=0.046 Sum_probs=158.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHHH
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRLVSN----VNSYNMVIDCFCKVNMMDRATEICREMRDR----DI-APNLVTFNTL 296 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 296 (504)
....+...|++++|...++++.+..+. + ...+..+...+...|++++|...+++.... +. +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344444445555555555444443322 1 233444444555555555555555443321 10 1112344445
Q ss_pred HHHHhcCCchHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 048258 297 ISGHCKDAEVHKTRELLVMLLEC----GFK-PDKFTFNSMIDCLCRAHR--------------------FEDALDCLSEM 351 (504)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~ 351 (504)
...+...|++++|...+++..+. +.. ....++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 55555555555555555554321 100 012245555556666666 66666666655
Q ss_pred HHC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 352 VEW----GV-PPNTITYNILIRSLCAIGDVARSLRLFQKMQAD----RIS-PDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 352 ~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
... +. +....++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 431 11 112335677777888888888888888877643 101 11236777888888899999999998887
Q ss_pred HhCCC-CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 422 LTLGL-RPD----NFSYSALIKALIKSGRFDEAKQTFLSMEQN----GCNP-DSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 422 ~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
.+... .++ ..++..+...+...|++++|...++++.+. +-.+ ...++..++.++...|++++|.++++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 75310 011 446777888899999999999999888653 1111 1346778899999999999999999999
Q ss_pred HHcC
Q 048258 492 KERG 495 (504)
Q Consensus 492 ~~~~ 495 (504)
.+..
T Consensus 330 ~~~~ 333 (338)
T 3ro2_A 330 LEIS 333 (338)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 8753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-12 Score=112.14 Aligned_cols=235 Identities=10% Similarity=0.005 Sum_probs=134.7
Q ss_pred hhhHHHHHHHHHhc----CCH----HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh-------cCCH-------HHHHHH
Q 048258 10 TRLYNAVIDALVKS----NSI----DLAYLKFQQMSVDQCKPDRFTYNILIHGICR-------IGVV-------DEALRL 67 (504)
Q Consensus 10 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~ 67 (504)
...|...+....+. ++. ++|+.+|+++.+.. +.++..|..++..+.. .|++ ++|+.+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34566666665543 233 67777888877654 5677777777766653 4664 677777
Q ss_pred HHHHHh-CCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 68 VKQMEG-LGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPN-EA-TVRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 68 ~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
|++..+ .. +.+...|..++..+.+.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+.
T Consensus 87 ~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 87 YERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777776 32 334556777777777777777777777777764 232 22 5666666666667777777776666665
Q ss_pred CCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHH
Q 048258 145 EPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYL 224 (504)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (504)
.|. ....|........ ...|+.++|..+|+...+.. +.+...+.
T Consensus 164 ~p~-~~~~~~~~a~~~~----------------------------------~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 207 (308)
T 2ond_A 164 ART-RHHVYVTAALMEY----------------------------------YCSKDKSVAFKIFELGLKKY-GDIPEYVL 207 (308)
T ss_dssp TTC-CTHHHHHHHHHHH----------------------------------HTSCCHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred CCC-CHHHHHHHHHHHH----------------------------------HHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 443 2223322221111 11344444444444444432 22444555
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCC-CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDR-LV--SNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
.++..+.+.|++++|..+|++++... .. .....|..++....+.|+.+.|..+++++.+.
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555555566666666666665542 12 13445555666666666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-14 Score=125.18 Aligned_cols=278 Identities=11% Similarity=-0.070 Sum_probs=161.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CcH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD----RFTYNILIHGICRIGVVDEALRLVKQMEGL----GYA-PNV 80 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~ 80 (504)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|++.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3456667788888999999999999988764 333 356778888888999999999998886543 111 235
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------hHHHH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERNV-CPN----EATVRSLVHGVFRCLD--------------------PHKAF 135 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 135 (504)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5677788888888999999988888765311 112 2356667777777777 66666
Q ss_pred HHHHHHHhcC-----CCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 048258 136 ELLIRFMERE-----PLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDT 210 (504)
Q Consensus 136 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (504)
+.+++..... .......+..+...+...|++++|.+.+++......
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------------------------- 214 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK----------------------------- 214 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----------------------------
Confidence 6666544320 011122344444445555555555555544432100
Q ss_pred HHhcCC-CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 211 FIKRGV-KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-----SNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 211 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
..+. .....++..++..+...|++++|...++........ ....++..+...+...|++++|...+++..+.
T Consensus 215 --~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 215 --EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp --HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0000 001224455555555566666666555555432111 01334555566666666666666666655432
Q ss_pred CC-----CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC
Q 048258 285 DI-----APNLVTFNTLISGHCKDAEVHKTRELLVMLLEC 319 (504)
Q Consensus 285 ~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (504)
.. .....++..+...+...|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 011234555666666666666666666666543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-13 Score=121.33 Aligned_cols=231 Identities=8% Similarity=-0.048 Sum_probs=166.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHC----CC--CccHHHHH
Q 048258 261 VIDCFCKVNMMDRATEICREMRDR----DIAP-NLVTFNTLISGHCKDAEVHKTRELLVMLLEC----GF--KPDKFTFN 329 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~ 329 (504)
....+...|++++|+..+++..+. +..+ ...++..+...|...|+++.|...+.+..+. +. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666778888888888877654 1111 2356777777888888888888888776542 10 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHhHH
Q 048258 330 SMIDCLCRAHRFEDALDCLSEMVEWGVP-PN----TITYNILIRSLCAIGDVARSLRLFQKMQAD----RI-SPDIYTFN 399 (504)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 399 (504)
.+..+|...|++++|+..+++..+.... ++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888899999999999999887753110 11 236888999999999999999999998762 22 33455788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC---CCC-cccHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCC-ChhhHHHH
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLTLGL---RPD-NFSYSALIKALIKSGR---FDEAKQTFLSMEQNGCNP-DSYTSNLI 471 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 471 (504)
.+..++...|++++|...+++..+... .|. ...+..+...+...|+ +++|..++++.. ..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 899999999999999999998876310 111 2235667778888888 777777776662 233 34567789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 048258 472 LETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 472 ~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+..|...|++++|.++++++.+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-13 Score=106.13 Aligned_cols=168 Identities=15% Similarity=0.083 Sum_probs=127.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
-++.+|..+...+.+.|++++|+..|++..+.+ |.+..++..+..++.+.|++++|+..++...... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 356678888888888888888888888888776 5677788888888888888888888888887664 34566777777
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
..+...++++.+...+.+..... +.+...+..+..++...|++++|++.|++..+..|. +..++..+..++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 77778888888888888887764 235667777778888888888888888887777665 5566777777777777777
Q ss_pred HHHHHHHHHhhC
Q 048258 168 EAAAILRKMGDR 179 (504)
Q Consensus 168 ~a~~~~~~~~~~ 179 (504)
+|.+.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=105.34 Aligned_cols=167 Identities=15% Similarity=0.080 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 048258 324 DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQ 403 (504)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (504)
+..+|..+...|...|++++|+..|++..+.. |.+..++..+..++...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44556666666666677777777777666653 3355566666666666777777777666666542 334445555666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEE 483 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 483 (504)
.+...++++.|...+.+..+.. +.+...+..+..++...|++++|++.+++..+.. +.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6666667777777766666542 2234556666666667777777777777666642 2345566666677777777777
Q ss_pred HHHHHHHHHHc
Q 048258 484 AHDIVKTSKER 494 (504)
Q Consensus 484 a~~~~~~~~~~ 494 (504)
|.+.++++.+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777766654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.3e-13 Score=120.24 Aligned_cols=300 Identities=9% Similarity=-0.009 Sum_probs=161.3
Q ss_pred HHhcCCHHHHHHHHHHhhhC--CC--CCCHHhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCCCcHHh
Q 048258 20 LVKSNSIDLAYLKFQQMSVD--QC--KPDRFTYNILIHG--ICRIGVVDEAL-----------RLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~~ 82 (504)
+.+.+++++|..+++.+.+. .. .++...|-.++.. ....++++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 45678888888888777543 11 2223333333222 12223333444 555555432 111111
Q ss_pred H------HHHHHHHHhcCChhhHHHHHHHHHHcC--CC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchh
Q 048258 83 Y------TILIDGFCNAKRVAEVFRVLEIMKERN--VC--P-NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKL 151 (504)
Q Consensus 83 ~------~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (504)
+ ......+...|++++|...|++..+.- .. + ...++..+...+...|++++|...+++.....+.....
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1 113444556677777777777765430 11 1 12345556666666666666666666554421110000
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc----CCC-ccHHHHHHH
Q 048258 152 VCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR----GVK-PRFSTYLLL 226 (504)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 226 (504)
......++..+...+...|++++|++.+++..+. +.. ....++..+
T Consensus 180 -----------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 180 -----------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0001123444444555555555555555544432 101 112356667
Q ss_pred HHHHHhcCCcHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhHHHHH
Q 048258 227 MEALYKAGRDVEGDRYLNHVFK-----DRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRD----IAPNLVTFNTLI 297 (504)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 297 (504)
+.++...|++++|...++++.+ ...+....++..+...+.+.|++++|...+++..+.. .+.....+..+.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777777665 2212245667777777778888888887777765431 111223355677
Q ss_pred HHHhcCCc---hHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 298 SGHCKDAE---VHKTRELLVMLLECGFKP-DKFTFNSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 298 ~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
..+...|+ .++|...++.. +..+ ....+..+...|...|++++|...+++..+
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777 55565555554 2222 234566777888888888888888888765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-13 Score=124.31 Aligned_cols=216 Identities=7% Similarity=-0.096 Sum_probs=179.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 048258 59 GVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV-AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFEL 137 (504)
Q Consensus 59 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (504)
+.+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+... .+...+..+..+|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34677888888777653 44778888888888899999 999999999888742 3577888899999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHhcC---------CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHcc--------CC
Q 048258 138 LIRFMEREPLTQKLVCNTLLYRLSNN---------SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTG--------LD 200 (504)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 200 (504)
|++..+..|. ...+..+...+... |++++|.+.|++..+.... +...+..+..++... |+
T Consensus 160 ~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 9999888765 47888888888888 9999999999998876422 577888888888888 88
Q ss_pred hhhHHHHHHHHHhcCCC---ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048258 201 LNETCGILDTFIKRGVK---PRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEI 277 (504)
Q Consensus 201 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 277 (504)
+++|+..+++..+.. + .+...+..+..++...|++++|.+.|+++.+..+. +...+..+..++...|++++|++.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998864 3 47888999999999999999999999999887755 677888888899999999999887
Q ss_pred HHHH
Q 048258 278 CREM 281 (504)
Q Consensus 278 ~~~~ 281 (504)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=119.65 Aligned_cols=202 Identities=16% Similarity=0.110 Sum_probs=108.7
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHC------C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-C
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLEC------G-FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW------GV-P 357 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~ 357 (504)
++..+...+...|++++|...++...+. + .+.....+..+...+...|++++|...++++.+. +. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444444455555555544444321 1 1122345555566666666666666666665542 11 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC------
Q 048258 358 PNTITYNILIRSLCAIGDVARSLRLFQKMQAD------RISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL------ 424 (504)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 424 (504)
.....+..+...+...|++++|...++++.+. +..| ...++..+..++...|++++|...++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 22335666667777777777777777776543 1122 2345666777777777777777777777642
Q ss_pred -CCCCCcccH-------HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 425 -GLRPDNFSY-------SALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 425 -~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
...+..... ......+...+.+.++...++..... .+....++..++.+|.+.|++++|.++++++.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 112222111 12222334456677777777777653 1335667888999999999999999999998764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-12 Score=120.99 Aligned_cols=217 Identities=10% Similarity=-0.118 Sum_probs=187.6
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDP-HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
..+++++..++...... +.+...+..+...+...|++ ++|.+.|++.++..|. +...|..+...|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34678888888776553 34778889999999999999 9999999999998776 677899999999999999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHcc---------CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------CC
Q 048258 173 LRKMGDRGYLPESSTFDYTVTCLVTG---------LDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKA--------GR 235 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 235 (504)
|++..+.. |+...+..+...+... |++++|++.+++..+.. +.+...+..+..++... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99998864 6678889999999999 99999999999999875 55688899999999998 99
Q ss_pred cHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHH
Q 048258 236 DVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELL 313 (504)
Q Consensus 236 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (504)
+++|...|+++.+..+. .+...+..+..++...|++++|++.|++..+.... +...+..+...+...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987651 38889999999999999999999999999887533 6677888889999999999998877
Q ss_pred HHH
Q 048258 314 VML 316 (504)
Q Consensus 314 ~~~ 316 (504)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=119.87 Aligned_cols=171 Identities=12% Similarity=-0.019 Sum_probs=129.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVD-------QCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL------ 74 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 74 (504)
.+..++..+...+...|++++|...|+++.+. ..+....++..+...+...|++++|+..+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888999999999999999999998863 22445667888899999999999999999988754
Q ss_pred C-CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--
Q 048258 75 G-YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER------NVCP-NEATVRSLVHGVFRCLDPHKAFELLIRFMER-- 144 (504)
Q Consensus 75 ~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 144 (504)
+ .+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|.+.+++....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2 1234567888888999999999999999988764 2112 3346777788888889999998888887764
Q ss_pred ----C-CCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 145 ----E-PLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 145 ----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
. ......++..+...+...|++++|.+.++++..
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 112334666777778888888888888877754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.4e-12 Score=112.61 Aligned_cols=229 Identities=11% Similarity=-0.004 Sum_probs=161.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHhcCCchHHHHHHHHHHHHC----CC-C-ccHHHHH
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRDI-AP----NLVTFNTLISGHCKDAEVHKTRELLVMLLEC----GF-K-PDKFTFN 329 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~ 329 (504)
....+...|++++|+..|++..+... .+ ...++..+...|...|+++.|...+.+..+. +. . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456678888888888888765411 11 2346677777888888888888888776542 11 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHhHH
Q 048258 330 SMIDCLCRAHRFEDALDCLSEMVEW----GVP-PNTITYNILIRSLCAIGDVARSLRLFQKMQA-----DRISPDIYTFN 399 (504)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 399 (504)
.+..+|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888999999999999887652 111 1234677888899999999999999998876 32 33366788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCC-C---cccHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCC-ChhhHHHH
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLTLGLRP-D---NFSYSALIKALIKSGR---FDEAKQTFLSMEQNGCNP-DSYTSNLI 471 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 471 (504)
.+..++...|++++|...+++..+..... + ...+..+...+...|+ +.+|+..+++. +..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88899999999999999999988742111 1 2234455555666777 67777777652 2223 33466788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048258 472 LETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 472 ~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+..|...|++++|.++++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998865
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-11 Score=110.52 Aligned_cols=161 Identities=9% Similarity=-0.085 Sum_probs=82.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC-----CC-ChhhHHH
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPL-----TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGY-----LP-ESSTFDY 190 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ 190 (504)
...+...|++++|...|++....... ....++..+...+...|+++.|...+.+...... .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33445566666666666665543111 1223455555566666666666666555433100 00 1234445
Q ss_pred HHHHHHccCChhhHHHHHHHHHhc----CCC-ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 048258 191 TVTCLVTGLDLNETCGILDTFIKR----GVK-PRFSTYLLLMEALYKAGRDVEGDRYLNHVFK-----DRLVSNVNSYNM 260 (504)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 260 (504)
+...+...|++++|++.+++..+. +.+ ....++..++.++...|++++|...++++.. ..+. ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 555556666666666665555442 111 1123455555666666666666666665554 3322 2445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 048258 261 VIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
+...+.+.|++++|...+++..+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666666666666666655544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-11 Score=108.43 Aligned_cols=299 Identities=11% Similarity=0.033 Sum_probs=180.4
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCccH----HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-CCH----HHHH
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKPRF----STYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-SNV----NSYN 259 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~ 259 (504)
......+...|++++|...+++........+. ..+..+...+...|++++|...+++....... .+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445566778888888888887775422222 24556667777888888888888877653211 111 2345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC----ccHHHH
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDR----DIA--P-NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFK----PDKFTF 328 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 328 (504)
.+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... .....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5667777888888888888776543 111 1 2234555667777888888888888777643211 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHH
Q 048258 329 NSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT-ITYN-----ILIRSLCAIGDVARSLRLFQKMQADRISPD---IYTFN 399 (504)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 399 (504)
..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 66777777888888888888877653111111 1111 223346677888888888877765432111 22455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLTL----GLRPDN-FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILET 474 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 474 (504)
.+...+...|++++|...++++... |..++. ..+..+..++...|++++|...+++..... +... ....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~~g----~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NRTG----FISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHC----CCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cccc----HHHH
Confidence 6667777788888888888776542 211111 245556666777888888888888877531 1111 1223
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 048258 475 LVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+...| +....+++.+....
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTT
T ss_pred HHHcc--HHHHHHHHHHHhCC
Confidence 33444 56666666665543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-11 Score=98.23 Aligned_cols=165 Identities=15% Similarity=0.045 Sum_probs=125.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456677788888888888888888887665 5567788888888888888888888888887764 4467778888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++.....+. +...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887764 345667777777888888888888888887776544 455666677777777777777
Q ss_pred HHHHHHHhh
Q 048258 170 AAILRKMGD 178 (504)
Q Consensus 170 ~~~~~~~~~ 178 (504)
.+.+++...
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-10 Score=105.12 Aligned_cols=235 Identities=11% Similarity=-0.033 Sum_probs=133.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCc--HHhH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRF----TYNILIHGICRIGVVDEALRLVKQMEGLG--Y-APN--VYTY 83 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~--~~~~ 83 (504)
+......+...|+++.|...+++........+.. +++.+...+...|++++|...+++..... . .+. ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556677888898988888877654222222 45566677778888888888888875421 0 111 2235
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc----chhH
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKER----NVC--P-NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT----QKLV 152 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 152 (504)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.....+.. ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56667777888888888888877653 211 1 12345556677777888888888887776543321 1234
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh-hhHH-----HHHHHHHccCChhhHHHHHHHHHhcCCCc---cHHHH
Q 048258 153 CNTLLYRLSNNSMASEAAAILRKMGDRGYLPES-STFD-----YTVTCLVTGLDLNETCGILDTFIKRGVKP---RFSTY 223 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 223 (504)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555666666777777777777665432111111 1111 11223445566666666665554432111 11123
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHH
Q 048258 224 LLLMEALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~ 247 (504)
..+...+...|++++|...++.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555555554443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.9e-12 Score=120.13 Aligned_cols=167 Identities=11% Similarity=-0.021 Sum_probs=148.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
-++..|+.+...+.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|+..|++..+.. +-+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 346789999999999999999999999999876 5678899999999999999999999999998875 44688999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
.+|...|++++|++.|++..+.+. -+...+..+..++...|++++|++.|++.++..|. ....+..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 999999999999999999998753 36678999999999999999999999999998776 6778888999999999999
Q ss_pred HHHHHHHHHhh
Q 048258 168 EAAAILRKMGD 178 (504)
Q Consensus 168 ~a~~~~~~~~~ 178 (504)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-11 Score=97.63 Aligned_cols=165 Identities=20% Similarity=0.142 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 048258 326 FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSF 405 (504)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (504)
..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455566667777888888888888777653 3466677777888888888888888888877652 34566777777888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 048258 406 CRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAH 485 (504)
Q Consensus 406 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 485 (504)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887753 3455667777788888888888888888887753 345677788888888888888888
Q ss_pred HHHHHHHHc
Q 048258 486 DIVKTSKER 494 (504)
Q Consensus 486 ~~~~~~~~~ 494 (504)
++++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-11 Score=118.45 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=75.5
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048258 291 VTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSL 370 (504)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (504)
.+++.+...+.+.|++++|++.|++..+... -+...+..+..+|.+.|++++|+..|++.++.. +.+...|..+..++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444445555555555555555555444321 134444444445555555555555555544432 22334444455555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 048258 371 CAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEA 449 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 449 (504)
...|++++|++.|+++.+.. +-+...++.+..+|...|++++|++.|+++++. .|+ ...+..++.++...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 55555555555555544431 223334444444555555555555555554443 222 33444444444455555555
Q ss_pred HHHHHHHHh
Q 048258 450 KQTFLSMEQ 458 (504)
Q Consensus 450 ~~~~~~~~~ 458 (504)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-11 Score=99.43 Aligned_cols=195 Identities=10% Similarity=0.024 Sum_probs=143.9
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048258 289 NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIR 368 (504)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (504)
|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5677888888888999999999999988876543677777778888889999999999999988864 336667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---cccHHHHHH
Q 048258 369 SLCAIGDVARSLRLFQKMQADRISPDI-------YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD---NFSYSALIK 438 (504)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 438 (504)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|+++++. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999888753 2334 45777778888889999999999998875 444 455666666
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 439 ALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
++...| ...++++...+ ..+...+... .....+.+++|..+++++.+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 665443 44455555542 2233333332 2344566899999999998865
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-10 Score=96.48 Aligned_cols=136 Identities=10% Similarity=-0.073 Sum_probs=94.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
+.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.|++..+.+. .+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3456777777888888888888888888887765326666777777778888888888888888877642 245567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcch------hHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLTQK------LVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
..++...|++++|.+.+++.....|.... ..+..+...+...|++++|.+.|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 77888888888888888887776654221 2344455555555666666666655554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-11 Score=105.43 Aligned_cols=204 Identities=15% Similarity=0.096 Sum_probs=117.9
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHC------C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 048258 290 LVTFNTLISGHCKDAEVHKTRELLVMLLEC------G-FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW------G- 355 (504)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 355 (504)
..++..+...+...|++++|...++.+.+. + .+....++..+...|...|++++|...++++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334445555555555555555555554432 1 1223445666666667777777777777666543 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC----
Q 048258 356 VPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD------RISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL---- 424 (504)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 424 (504)
.+....++..+...+...|++++|...++++.+. ...| ...++..+..+|...|++++|...++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1223446677777777788888888877777653 1122 3456777888888888888888888877753
Q ss_pred ---CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHH---h-cC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 425 ---GLRPDN-FSYSALIKALIKSGRFDEAKQTFLSME---Q-NG-CNP-DSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 425 ---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~---~-~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
...+.. ..+..+.......+....+..+ ..+. . .+ ..| ...++..++.+|...|++++|.++++++.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122332 2333333333333333333222 2221 1 11 112 3456788899999999999999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-09 Score=97.77 Aligned_cols=123 Identities=9% Similarity=0.019 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI-GDVARSLRLFQKMQADRISPDIYTFNALIQSF 405 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (504)
.|...+....+.++.+.|..+|+.+ +. .+.+...|.......... ++.+.|..+|+...+.. +.+...+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444555555556666666666666 21 112223332222211222 25666666666666541 22233344455555
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 406 CRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 406 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
...|+.+.|..+|+++.+ ....|...+..-...|+.+.+..++++..
T Consensus 365 ~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666666666521 23445555554455666666666666655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-11 Score=103.79 Aligned_cols=158 Identities=12% Similarity=-0.065 Sum_probs=114.2
Q ss_pred HhcCCHHHHHHHHHHhhhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCcHHhHHHH
Q 048258 21 VKSNSIDLAYLKFQQMSVD-------QCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL------GY-APNVYTYTIL 86 (504)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 86 (504)
...|+++.|+..|++..+. +.+....++..+...+...|++++|+..++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766542 22335667888899999999999999999988754 21 2345678888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------C-CCcchhH
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKER------NV-CPNEATVRSLVHGVFRCLDPHKAFELLIRFMER------E-PLTQKLV 152 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 152 (504)
..+|...|++++|...++++.+. .. +....++..+...+...|++++|.+.+++.... . ......+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 123456777888888889999998888887765 1 1123456
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 153 CNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
+..+...+...|++++|...+++...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777777778888888877777654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-09 Score=90.12 Aligned_cols=179 Identities=10% Similarity=0.012 Sum_probs=94.3
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 274 ATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGF-KPDKFTFNSMIDCLCRAHRFEDALDCLSEMV 352 (504)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (504)
|+..|++....+ .++..++..+..++...|++++|++++...+..+. .-+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 23444445555666666666666666666554432 1245555566666666666666666666665
Q ss_pred HCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 353 EWGVPP-----NTITYNILIRS--LCAIG--DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 353 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 23344444444 22223 666666666666543 33322222333356666666666666665443
Q ss_pred C-----CC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 424 L-----GL----RPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 424 ~-----~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
. +. +.++.++..++......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2 00 1234444344444444554 666666666663
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-07 Score=88.31 Aligned_cols=373 Identities=8% Similarity=-0.038 Sum_probs=217.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CC-CCcHHhH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV-VDEALRLVKQMEGL-GY-APNVYTY 83 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~-~~~~~~~ 83 (504)
.--..+|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |. ..+...|
T Consensus 12 ~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 4445567666666654 7888888888888875 4688888887777766663 35566777776543 32 3356677
Q ss_pred HHHHHHHH----hcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 048258 84 TILIDGFC----NAKRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLY 158 (504)
Q Consensus 84 ~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (504)
...+..+. ..++.+.+.++|+++..... .+. ..|...... ........+..+..+..
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------- 150 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFENF-ELELNKITGKKIVGDTL---------------- 150 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHHH-HHHhccccHHHHHHHHh----------------
Confidence 77776544 24567778888888876421 111 122222111 11111222222222211
Q ss_pred HHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC--C-----hhhHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 048258 159 RLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGL--D-----LNETCGILDTFIKRGVKPRFSTYLLLMEALY 231 (504)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (504)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++... +.+...+...+..+.
T Consensus 151 -----~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 151 -----PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLI 224 (493)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 112223333332221000012234444333322211 0 234667888877753 556778888888888
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------CCCChhhHHHHHHH
Q 048258 232 KAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRD------------IAPNLVTFNTLISG 299 (504)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~ 299 (504)
+.|+.+.|..++++.+.. +. +...+.. |......++. ++.+.+.- .......|...+..
T Consensus 225 ~~~~~~~ar~i~erAi~~-P~-~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM-SD-GMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH-CC-SSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC-CC-cHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 889999999999998887 33 4333332 2221111111 22222110 01112456666666
Q ss_pred HhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 300 HCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR-AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 378 (504)
..+.++.+.|..+|+.. +. ...+...|......-.. .++.+.|..+|+...+.. +.++..+...+......|+.+.
T Consensus 296 ~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 66778899999999998 32 12344444433332222 346999999999998863 3345556667777788999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 379 SLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 373 aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 373 ARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999983 2567888888777788999999999988774
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-10 Score=94.54 Aligned_cols=102 Identities=7% Similarity=-0.090 Sum_probs=76.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHHh
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD---RFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APNVYT 82 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~ 82 (504)
.++..+......+.+.|++++|+..|+++.+.. +.+ ..++..+..++.+.|++++|+..|++..+... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 445667777888888888888888888888764 333 66777888888888888888888888877521 122456
Q ss_pred HHHHHHHHHh--------cCChhhHHHHHHHHHHcC
Q 048258 83 YTILIDGFCN--------AKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 83 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~ 110 (504)
+..+..++.. .|++++|+..|+++.+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 6677777777 888888888888888763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.4e-10 Score=83.86 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
.|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46667777888888888888888877654 4566777777777888888888888888877654 345667777777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 92 NAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++....|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888877663 23455666777777777777777777777665443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-10 Score=98.00 Aligned_cols=162 Identities=10% Similarity=0.026 Sum_probs=85.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHC----CCCc-cHHHHHHH
Q 048258 262 IDCFCKVNMMDRATEICREMRDR----DIAP-NLVTFNTLISGHCKDAEVHKTRELLVMLLEC----GFKP-DKFTFNSM 331 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 331 (504)
...|...|++++|.+.|.+..+. +.++ ...++..+...|...|++++|...+++..+. |-.. ...++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666677777777777665443 1111 1345666666666666666666666665432 1100 02345555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HhHH
Q 048258 332 IDCLCRA-HRFEDALDCLSEMVEWGVPP-N----TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDI------YTFN 399 (504)
Q Consensus 332 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~ 399 (504)
...|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|+++.+....... ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5556554 66666666666655421000 0 234555556666666666666666666554211111 1344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
.+..++...|++++|...|++..+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555566666666666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=5.6e-09 Score=88.40 Aligned_cols=178 Identities=11% Similarity=-0.031 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRL-VSNVNSYNMVIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
+..+++....+ +++..++..++.++...|++++|++++.+.+..++ .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444443332 23333344555555555555555555555544433 12444555555556666666666666665554
Q ss_pred CCCCC-----ChhhHHHHHHHH----hcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048258 284 RDIAP-----NLVTFNTLISGH----CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW 354 (504)
Q Consensus 284 ~~~~~-----~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (504)
. .| +..+...+..++ ...++...|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 22 123333333331 1123555555555555443 223222223333455555555555555544331
Q ss_pred C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 355 G---------VPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 355 ~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
- -+.++.++..++......|+ +|.++++++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0 02234444344444444444 455555555553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-09 Score=91.60 Aligned_cols=190 Identities=12% Similarity=0.025 Sum_probs=113.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C-Chh
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN---VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC-P-NEA 116 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~ 116 (504)
+.+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|+..|+++.+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456677777778888888888888888887763 223 567777888888888888888888888876321 1 234
Q ss_pred hHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 048258 117 TVRSLVHGVFR--------CLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTF 188 (504)
Q Consensus 117 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (504)
.+..+..++.. .|++++|...|++++...|... .....+ ..+..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~--------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE-LVDDAT--------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT-THHHHH--------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch-hHHHHH--------------HHHHHHHHH----HHHHH
Confidence 56666777777 7778888888877777655421 111111 111111000 01113
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhc----------CCcHHHHHHHHHHHhCCC
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKP--RFSTYLLLMEALYKA----------GRDVEGDRYLNHVFKDRL 251 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~ 251 (504)
..+...+...|++++|+..++.+.+..... ....+..++.++... |++++|...++.+.+..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 344555666666666666666666542111 234555555555544 555666666666655443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-09 Score=89.02 Aligned_cols=115 Identities=14% Similarity=0.010 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNI----------------LIHGICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~ 73 (504)
...+......+.+.|+++.|+..|++..+.+ +.+...|.. +..++.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455667778888888888888887653 334444544 55555555555555555555555
Q ss_pred CCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 74 LGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
.. +.+...+..+..++...|++++|+..|++..+.++ .+..++..+..+|..
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYL 134 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 43 23445555555555555555555555555555431 233444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-09 Score=81.78 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4455555666666666666666665542 2344455556666666666666666666666542 2234455566666666
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 443 SGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
.|++++|.+.++++.... +.+..++..++.++...|++++|.+.++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 667777777766666542 2345566666667777777777777777666543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-09 Score=85.46 Aligned_cols=174 Identities=11% Similarity=-0.000 Sum_probs=81.7
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHH
Q 048258 310 RELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG----DVARSLRLFQK 385 (504)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~ 385 (504)
...|++..+.| ++..+..+...|...+++++|+..|++..+.+ ++..+..+...|.. + ++++|...|++
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 34444444432 34444444444555555555555555555432 33444444444444 3 45555555555
Q ss_pred HHhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHH
Q 048258 386 MQADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLGLR-PDNFSYSALIKALIK----SGRFDEAKQTFLSM 456 (504)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 456 (504)
..+.+ +...+..|...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .+++++|..+|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 54432 33444444444444 44555555555555544310 013444445555544 44555555555555
Q ss_pred HhcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 048258 457 EQNGCNPDSYTSNLILETLVQQ-G-----RFEEAHDIVKTSKERG 495 (504)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 495 (504)
.+. +++...+..+..+|..- | ++++|..+++++.+.|
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 543 12333444455444432 2 5555555555555444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=94.18 Aligned_cols=209 Identities=12% Similarity=-0.070 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc-HHhHHHHHHHHHhcCChhhH
Q 048258 25 SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL----GYAPN-VYTYTILIDGFCNAKRVAEV 99 (504)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a 99 (504)
++++|...|+++ +..|...|++++|+..|++..+. |.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33456677777777777766542 21122 45677777777777888887
Q ss_pred HHHHHHHHHcCCC-CC----hhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCc-----chhHHHHHHHHHhcCCChHH
Q 048258 100 FRVLEIMKERNVC-PN----EATVRSLVHGVFRC-LDPHKAFELLIRFMEREPLT-----QKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 100 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 168 (504)
+..|++..+.... .+ ..++..+..+|... |++++|.+.|++.+...+.. ...+++.+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777777653110 01 23566777777775 88888888777776543221 13456677777888888888
Q ss_pred HHHHHHHHhhCCCCCCh------hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCc-c---HHHHHHHHHHHH--hcCCc
Q 048258 169 AAAILRKMGDRGYLPES------STFDYTVTCLVTGLDLNETCGILDTFIKRGVKP-R---FSTYLLLMEALY--KAGRD 236 (504)
Q Consensus 169 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~ 236 (504)
|+..|++.......... ..+..+..++...|++++|+..+++..+..... + ...+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 88888877765332221 145666677777888888888887776642110 1 112344455553 34557
Q ss_pred HHHHHHHHHHHh
Q 048258 237 VEGDRYLNHVFK 248 (504)
Q Consensus 237 ~~a~~~~~~~~~ 248 (504)
++|+..|+.+..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 777777766544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.3e-10 Score=87.59 Aligned_cols=163 Identities=13% Similarity=-0.005 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH-
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG- 89 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 89 (504)
..+......+.+.|+++.|+..|+++.+.. +.+...+..+...+...|++++|+..+++..... |+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 345667788999999999999999988765 5678889999999999999999999999987663 354443332222
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-chhHHHHHHHHHhcCCChHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT-QKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 168 (504)
+...+...+++..+++..+... .+...+..+..++...|++++|...|+++....|.. +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1222334457888888887642 356778888888888899999999888888887653 34577777888888888888
Q ss_pred HHHHHHHHh
Q 048258 169 AAAILRKMG 177 (504)
Q Consensus 169 a~~~~~~~~ 177 (504)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=106.36 Aligned_cols=153 Identities=8% Similarity=-0.117 Sum_probs=84.2
Q ss_pred HhcCCHHHHHHHHHHhh--------hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 21 VKSNSIDLAYLKFQQMS--------VDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 21 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
...|++++|+..++++. +.. +.+...+..+...+...|++++|+..|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45556666666666555 332 3344555555555666666666666666655543 2345555555555666
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
.|++++|+..|++..+.+. .+...+..+..++...|++++ .+.|++..+..|. +...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666555431 234455555555566666666 6666665555444 334555555555555555555555
Q ss_pred HHHHhh
Q 048258 173 LRKMGD 178 (504)
Q Consensus 173 ~~~~~~ 178 (504)
|++..+
T Consensus 557 ~~~al~ 562 (681)
T 2pzi_A 557 LDEVPP 562 (681)
T ss_dssp HHTSCT
T ss_pred HHhhcc
Confidence 555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-10 Score=86.82 Aligned_cols=145 Identities=8% Similarity=-0.087 Sum_probs=105.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
|...+...|+++.|+..++...... +.+...+-.+...|.+.|++++|++.|++..+.. +.+..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3445566788888888888887653 3345556677888888899999999998888764 4467888888888888899
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFEL-LIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
+++|+..|++..+.+. -+..++..+..++.+.|+.++|.+. +++..+..|. +..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 9999999888888742 3566788888888888888766554 5777777665 5556665555555554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.14 E-value=9.5e-09 Score=85.14 Aligned_cols=183 Identities=11% Similarity=0.044 Sum_probs=107.5
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC-c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHH
Q 048258 291 VTFNTLISGHCKDAEVHKTRELLVMLLECGFK-P-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI---TYNI 365 (504)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 365 (504)
..+..+...+.+.|++++|...|+.+.+..+. + ....+..+..++.+.|++++|+..|+++.+.... +.. .+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHH
Confidence 34445556666677777777777777654221 1 1345566666777777777777777777665221 211 3333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc-cH-----------
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-SY----------- 433 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~----------- 433 (504)
+..++...|.. .+ ..+..+...+...|++++|...|+++++. .|+.. .+
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHH
Confidence 44444331100 00 00011111122344555555555555553 23321 11
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 434 ------SALIKALIKSGRFDEAKQTFLSMEQNGCNPD----SYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 434 ------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
..+...+.+.|++++|+..|+++++. .|+ ...+..++.++.+.|++++|.+.++.+...+
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 24566788999999999999999985 343 2568889999999999999999999998875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.6e-09 Score=85.81 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=36.1
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (504)
+..++...|++++|...|+++++..+. +...+..+..++...|++++|+..|++..+..+. +..++..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 445555555555555555555554433 4445555555555555555555555555544321 334444444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-08 Score=83.34 Aligned_cols=163 Identities=13% Similarity=0.033 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC----chHHHHHHHHHHHHCCCCccHHHHH
Q 048258 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA----EVHKTRELLVMLLECGFKPDKFTFN 329 (504)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (504)
++..+..+...|...+++++|+..|++..+.+ +...+..+...|.. + ++++|...|++..+.+ ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33344444444444444444444444444432 33334444444443 3 4444444444444432 333344
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 048258 330 SMIDCLCR----AHRFEDALDCLSEMVEWGVP-PNTITYNILIRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNA 400 (504)
Q Consensus 330 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 400 (504)
.+...|.. .+++++|+.+|++..+.+.. .++..+..|...|.. .+++++|...|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 44444443 44555555555555443210 013444444444444 44555555555555443 122333444
Q ss_pred HHHHHHcc-C-----CHHHHHHHHHHHHhCC
Q 048258 401 LIQSFCRM-N-----KIEKAEKAFFSMLTLG 425 (504)
Q Consensus 401 l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 425 (504)
|...|... | ++++|..+|++..+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44444321 1 4555555555555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-09 Score=91.97 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=94.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH-H
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVR-S 120 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ 120 (504)
+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344555555566666666666666666665543 3345556666666666666666666666665542 3332221 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGL 199 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 199 (504)
....+...++.+.|.+.+++.....|. +...+..+...+...|++++|.+.|.++....... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 222344555566666666666665554 44555566666666666666666666665542221 2445666666666666
Q ss_pred ChhhHHHHHHHHH
Q 048258 200 DLNETCGILDTFI 212 (504)
Q Consensus 200 ~~~~a~~~~~~~~ 212 (504)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666666665544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.5e-08 Score=81.87 Aligned_cols=232 Identities=9% Similarity=0.015 Sum_probs=130.4
Q ss_pred HHHHhcCC-HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHH----
Q 048258 18 DALVKSNS-IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG--VVDEALRLVKQMEGLGYAPNVYTYTILIDGF---- 90 (504)
Q Consensus 18 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 90 (504)
++..+.|. .++|+..++.++..+ +-+..+|+.-...+...| ++++++++++.+.... +-+..+|+.-...+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHH
Confidence 33334444 457777777777665 556666777666666666 7777777777777654 33455565544444
Q ss_pred Hhc---CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCC
Q 048258 91 CNA---KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH--KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM 165 (504)
Q Consensus 91 ~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (504)
... +++++++.+++.+.+.+. -+..+|..-..++...|.++ ++++.++++++..+. +-.+|+.-...+...+.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 333 566777777777776642 35566666666666666666 666666666666554 44445444333333333
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHH-HHHHHH
Q 048258 166 ASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVE-GDRYLN 244 (504)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~ 244 (504)
. .+ ...++++++.++.++... +.+...+..+...+.+.|+... +..+..
T Consensus 196 ~----------------~~-------------~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 196 L----------------AT-------------DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp G----------------CC-------------HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred c----------------ch-------------hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 0 00 000444555555555442 3345555555555555555333 333444
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 245 HVFKDR--LVSNVNSYNMVIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 245 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
.+...+ ...++..+..++..+.+.|+.++|+++++.+.+
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 443322 122556666666667677777777777777665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-07 Score=80.72 Aligned_cols=232 Identities=13% Similarity=0.059 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCChhhHHHHHHHH----Hhc---CCh
Q 048258 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK--RVAEVFRVLEIMKERNVCPNEATVRSLVHGV----FRC---LDP 131 (504)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 131 (504)
.++|+.+++.+...+ +-+..+|+.-..++...| +++++++.++.+...+.+ +..+|+.-..++ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 357777777777664 334556666666666666 777777777777766422 334444433333 233 455
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh--hHHHHHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN--ETCGILD 209 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~ 209 (504)
+++++.++++.+..|. +-.+| +.-.-.+...+.++ ++++.++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW-----------------------------------~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVW-----------------------------------SYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHH-----------------------------------HHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHH-----------------------------------HHHHHHHHHhcccChHHHHHHHH
Confidence 5555555555554443 33344 33333334444444 5555555
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCC------cHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 048258 210 TFIKRGVKPRFSTYLLLMEALYKAGR------DVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDR-ATEICREMR 282 (504)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 282 (504)
.+.+.. +-+..++......+...+. ++++++.++.++...+. |...|+..-..+.+.|+... +.++..++.
T Consensus 171 ~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 171 KVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 555543 3344455544444444444 78899999999988876 88999888888888887444 556777665
Q ss_pred hCC--CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 283 DRD--IAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 283 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
+.+ -..+...+..+...+.+.|+.++|.++++.+.+.--+....-|+...
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 543 13477889999999999999999999999998632233444454433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.2e-09 Score=85.53 Aligned_cols=187 Identities=10% Similarity=-0.034 Sum_probs=113.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc-HHhHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCK-P-DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYA-PN-VYTYT 84 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~~ 84 (504)
++..+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+.... +. ..++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456667788899999999999999999876311 1 2457788889999999999999999999876321 11 12444
Q ss_pred HHHHHHHh------------------cCChhhHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048258 85 ILIDGFCN------------------AKRVAEVFRVLEIMKERNVCPNEA-TVRSLVHGVFRCLDPHKAFELLIRFMERE 145 (504)
Q Consensus 85 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
.+..++.. .|++++|+..|+++.+.. |+.. ......... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH----
Confidence 44555543 456777777777776652 2222 211110000 000000
Q ss_pred CCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHccCChhhHHHHHHHHHhcC
Q 048258 146 PLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP--ESSTFDYTVTCLVTGLDLNETCGILDTFIKRG 215 (504)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (504)
......+...+.+.|++++|...|+++.+..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0011234556667777777777777776542211 12456667777777777777777777766653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.1e-10 Score=85.53 Aligned_cols=144 Identities=10% Similarity=-0.023 Sum_probs=100.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCH
Q 048258 332 IDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKI 411 (504)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (504)
...+...|++++|+..++...... +.+...+..+...|...|++++|++.|+++.+.. +.+...|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344556677888888888776542 2234456677888888888888888888887753 34567888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCC-ChhhHHHHHHHHHhcCC
Q 048258 412 EKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQT-FLSMEQNGCNP-DSYTSNLILETLVQQGR 480 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 480 (504)
++|...|+++++.. +-+...+..+...|.+.|++++|.+. ++++.+. .| +..++......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 88888888888753 22456777888888888888776654 5777764 44 45566666666666664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.5e-09 Score=88.60 Aligned_cols=165 Identities=12% Similarity=0.021 Sum_probs=100.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH-HHH
Q 048258 113 PNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTF-DYT 191 (504)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 191 (504)
.+...+..+...+...|++++|.+.|++.....|. +...+..+...+...|++++|...++++... .|+.... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 34455666777777778888888888877777665 4566666777777777777777777776554 2333222 122
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVS-NVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 270 (504)
...+...++.++|+..+++..... +.+...+..+...+...|++++|...+.++++..+.. +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 223444555566666666665553 3455566666666666666666666666666554431 24455566666666666
Q ss_pred HHHHHHHHHHH
Q 048258 271 MDRATEICREM 281 (504)
Q Consensus 271 ~~~a~~~~~~~ 281 (504)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 66666555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.3e-09 Score=102.39 Aligned_cols=147 Identities=10% Similarity=-0.059 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCF 265 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (504)
..+..+...+...|++++|++.++++.+.. +.+...+..+..++...|++++|...|+++++..+. +...+..+..++
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~ 511 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 344444455555555555555555555432 234445555555555555555555555555554433 444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 048258 266 CKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR 337 (504)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (504)
.+.|++++ ++.|++..+.+.. +...+..+..++.+.|++++|...|++..+... .+...+..+..++..
T Consensus 512 ~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPTSR-HFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST-THHHHHHHHHHHTC-
T ss_pred HHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc-ccHHHHHHHHHHHHc
Confidence 55555555 5555555544322 344555555555555555555555555544321 123344444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-09 Score=84.37 Aligned_cols=161 Identities=9% Similarity=-0.011 Sum_probs=94.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH-H
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG-V 125 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 125 (504)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.... |+......+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556667778888888888888876653 3456777788888888888888888888876653 233332222211 1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhH
Q 048258 126 FRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 204 (504)
...++...|.+.+++.....|. +...+..+...+...|++++|...|+++......+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222233456666666655544 44555556666666666666666666665543221 233455555555555555555
Q ss_pred HHHHHHH
Q 048258 205 CGILDTF 211 (504)
Q Consensus 205 ~~~~~~~ 211 (504)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.9e-09 Score=98.88 Aligned_cols=154 Identities=12% Similarity=-0.010 Sum_probs=115.4
Q ss_pred CCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048258 303 DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRL 382 (504)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 382 (504)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887764 2357788889999999999999999999999864 44677889999999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc---CChhHHHHHHHHHHhc
Q 048258 383 FQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKS---GRFDEAKQTFLSMEQN 459 (504)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 459 (504)
+++..+.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..+..++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 4457788899999999999999999999998863 33466788888899999 9999999999999886
Q ss_pred C
Q 048258 460 G 460 (504)
Q Consensus 460 ~ 460 (504)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9e-09 Score=98.46 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=114.4
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 048258 23 SNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRV 102 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 102 (504)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999988765 5568888889999999999999999999998875 44678888899999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC---CChHHHHHHHHHHhhC
Q 048258 103 LEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN---SMASEAAAILRKMGDR 179 (504)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (504)
+++..+.. +.+...+..+..++...|++++|.+.+++..+..+. +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 235678888899999999999999999999888765 566777888888888 9999999999988775
Q ss_pred C
Q 048258 180 G 180 (504)
Q Consensus 180 ~ 180 (504)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.2e-09 Score=89.77 Aligned_cols=130 Identities=11% Similarity=-0.047 Sum_probs=69.9
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHH
Q 048258 22 KSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFR 101 (504)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (504)
..|++++|.+++++..+.. +.. + +...++++.|...|++. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4577788888888776542 111 0 11146666666666654 334556677777777
Q ss_pred HHHHHHHcCC---CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHhcCCChHHHHH
Q 048258 102 VLEIMKERNV---CP--NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL-----TQKLVCNTLLYRLSNNSMASEAAA 171 (504)
Q Consensus 102 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~ 171 (504)
.|.+..+... .+ -..++..+..+|...|++++|...|++.+..... ....++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7766654310 00 1234555666666667777777666665443110 012344444555555 55555555
Q ss_pred HHHHHh
Q 048258 172 ILRKMG 177 (504)
Q Consensus 172 ~~~~~~ 177 (504)
.|++..
T Consensus 137 ~~~~Al 142 (307)
T 2ifu_A 137 LYQQAA 142 (307)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.2e-08 Score=79.49 Aligned_cols=133 Identities=8% Similarity=-0.141 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGF 90 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
..+..+...+...|++++|+..|+++. .|+..++..+...+...|++++|+..|++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667888899999999999999885 5688899999999999999999999999998775 45778899999999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 048258 91 CNAKRVAEVFRVLEIMKERNVCP---------------NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT 148 (504)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (504)
...|++++|+..|++..+..... ....+..+..++...|++++|.+.|++.....|..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999998863211 12577888889999999999999999998887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-08 Score=86.23 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 222 TYLLLMEALYKAGRDVEGDRYLNHVFKDRL---VS--NVNSYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
++..+...|...|++++|...|++.+.... .+ ...++..+...|.. |++++|+..|++..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 445555556666666666666655543210 00 12334444555555 55555555555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-07 Score=80.08 Aligned_cols=164 Identities=14% Similarity=0.077 Sum_probs=118.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHhHH
Q 048258 330 SMIDCLCRAHRFEDALDCLSEMVEWGV-PPNT----ITYNILIRSLCAIGDVARSLRLFQKMQADRIS-PD----IYTFN 399 (504)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 399 (504)
..+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|...++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667888999999999998877422 1221 12334666677778999999999998874222 22 23688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC-----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCC-hhhH
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLTL-----GLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQN----GCNPD-SYTS 468 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~ 468 (504)
.+..+|...|++++|...|+++.+. +..+. ..++..+..+|...|++++|...+++..+. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999999999888741 11111 236778888999999999999999888742 11222 5678
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048258 469 NLILETLVQQG-RFEEAHDIVKTSKE 493 (504)
Q Consensus 469 ~~l~~~~~~~g-~~~~a~~~~~~~~~ 493 (504)
..++.++.+.| .+++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999999 46999999988865
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-07 Score=81.09 Aligned_cols=167 Identities=14% Similarity=0.066 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT-----ITYNILIRSLCAIGDVARSLRLFQKMQADRI---SPD--IY 396 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 396 (504)
.+...+..+...|++++|...+++..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555667777777777777776664222110 1233455556677788888887777764311 111 34
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCC-Ch
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSMLTL-GLRPD-----NFSYSALIKALIKSGRFDEAKQTFLSMEQNG----CNP-DS 465 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~ 465 (504)
+++.+...|...|++++|...|+++.+. ...|+ ..++..++.+|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777777777888888888888777621 00122 1466777777888888888888887776421 111 14
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 048258 466 YTSNLILETLVQQGRFEEA-HDIVKTSKE 493 (504)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 493 (504)
.++..++.++.+.|++++| ..+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5667777788888888888 666766553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.90 E-value=5e-08 Score=72.04 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+......+.+.|++++|+..|++..+.+ +.+..+|..+..++.+.|++++|+..|++..+.+ +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3344444444455555555444444433 3344444444444444444444444444444432 2234444444444444
Q ss_pred cCChhhHHHHHHHHHHc
Q 048258 93 AKRVAEVFRVLEIMKER 109 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~ 109 (504)
.|++++|++.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-07 Score=76.75 Aligned_cols=126 Identities=5% Similarity=-0.021 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 048258 293 FNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA 372 (504)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (504)
+..+...+...|++++|...++... .|+...+..+..++...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344455556666666666665542 3455566666666666666666666666665542 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 048258 373 IGDVARSLRLFQKMQADRISPDI----------------YTFNALIQSFCRMNKIEKAEKAFFSMLTL 424 (504)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 424 (504)
.|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++.+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666665542 1111 45555555666666666666666666553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-06 Score=73.73 Aligned_cols=243 Identities=9% Similarity=-0.043 Sum_probs=142.8
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc-C-Ch
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG-VVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA-K-RV 96 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 96 (504)
..+.+..++|+..++.+...+ +-+..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334445578899998888776 557777887777777777 5889999999988875 44777888777777666 6 78
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCC---
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH--------KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM--- 165 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 165 (504)
++++++++.+.+... .|..+|..-..++.+.|.++ ++++.++++++..+. +..+|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 888888888887653 36667766666665555555 777777777776655 55666666655555554
Q ss_pred ----hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhh--HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHH
Q 048258 166 ----ASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNE--TCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239 (504)
Q Consensus 166 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (504)
++++++.+++....... |...|+.+-..+.+.|.... .... .|....-... .....
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~---------~~~~~~~~~~--------~~~~~ 281 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAI---------LPYTASKLNP--------DIETV 281 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHH---------GGGTC------------------
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccc---------cccccccccc--------cchhH
Confidence 45566666555543222 44444443333333332100 0000 0000000000 00111
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 240 DRYLNHVFKDR-----LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 240 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
......+.... ..+++..+..++..|...|+.++|.++++.+.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11111111111 1346677777888888888888888888887644
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-06 Score=73.90 Aligned_cols=243 Identities=10% Similarity=0.043 Sum_probs=138.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-ChH
Q 048258 56 CRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK-RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC-L-DPH 132 (504)
Q Consensus 56 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 132 (504)
...+..++|+++++.+...+ +-+..+|+.--.++...| .++++++.++.+...+. -+..+|+.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChH
Confidence 34445568888888888775 345667777777777777 48888888888887753 3666777766666665 6 777
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH--------HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhH
Q 048258 133 KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS--------EAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (504)
++++.++++++..+. +..+|+.-...+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+....
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~- 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET- 219 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC-
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc-
Confidence 888888888777655 5555554444443333333 555555555554332 44455555444444443000
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-------------
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMM------------- 271 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------- 271 (504)
+ ...++++++.+.+++...+. |...|+.+-..+.+.|..
T Consensus 220 --------------~-------------~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 220 --------------S-------------SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp --------------C-------------HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred --------------c-------------hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 0 00023444444444444333 444444433333333321
Q ss_pred -------HHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHH
Q 048258 272 -------DRATEICREMRDRD-----IAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSM 331 (504)
Q Consensus 272 -------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (504)
....+....+...+ ..++...+..++..|...|+.++|.++++.+.+.--+....-|+-.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 22333333332221 1357788899999999999999999999998754323333344433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9.6e-09 Score=78.29 Aligned_cols=103 Identities=12% Similarity=-0.055 Sum_probs=81.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLV 122 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (504)
.+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++..+..+ .++..+..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence 355667777788888888888888888888764 44677888888888888888888888888887743 3566778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
.++...|++++|.+.|++.+...+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888888877654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-07 Score=69.77 Aligned_cols=109 Identities=7% Similarity=-0.074 Sum_probs=86.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+. .+...+..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 4567777888889999999999999888764 45778888888888899999999999998888742 356778888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcchhHHHHH
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQKLVCNTL 156 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (504)
+...|++++|.+.|++.++..|. +...+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 88889999999888888887665 33444333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-07 Score=74.04 Aligned_cols=128 Identities=9% Similarity=-0.034 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGF 90 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
..|..+...+...|+++.|...|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666667777777777777766554 4456666666677777777777777777766553 33556666666666
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHH
Q 048258 91 CNAKRVAEVFRVLEIMKERNVCPNEATV--RSLVHGVFRCLDPHKAFELLIRF 141 (504)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~ 141 (504)
...|++++|...|+++.+... .+...+ ...+..+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 677777777777777666532 133333 22233345556666666655543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-06 Score=74.53 Aligned_cols=161 Identities=9% Similarity=0.028 Sum_probs=89.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcch-----hHHHHHHHHHhcCCChHHHHHHHHHHhhCCCC-CC----hhhHHHH
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLTQK-----LVCNTLLYRLSNNSMASEAAAILRKMGDRGYL-PE----SSTFDYT 191 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 191 (504)
+..+...|++++|...+++.....+..+. ..+..+...+...+++++|+..+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566677777777777776664332211 12223455556666777777777776653221 11 1246666
Q ss_pred HHHHHccCChhhHHHHHHHHHhc-----CCCc-cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC----CCC-CHHHHHH
Q 048258 192 VTCLVTGLDLNETCGILDTFIKR-----GVKP-RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR----LVS-NVNSYNM 260 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ 260 (504)
...|...|++++|+..++++.+. +..+ ...++..++..|...|++++|...+++.++.. ... -..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66667777777777777666631 1111 12355666666666666666666666655321 111 1345556
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHH
Q 048258 261 VIDCFCKVNM-MDRATEICREMR 282 (504)
Q Consensus 261 l~~~~~~~~~-~~~a~~~~~~~~ 282 (504)
+..++.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666665554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.2e-08 Score=75.39 Aligned_cols=104 Identities=11% Similarity=-0.077 Sum_probs=92.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+...+..+...+.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|+..|++..+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34567888899999999999999999999886 6789999999999999999999999999999875 446788999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChh
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEA 116 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 116 (504)
+|...|++++|+..|++..+.. |+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9999999999999999999874 4543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-07 Score=69.00 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
...|..+...+...|+++.|...|+++.+.. +.+..++..+...+...|++++|+..++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4456666666666677777777666666543 3455666666666666666666666666666543 3345566666666
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 048258 90 FCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~ 109 (504)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=70.66 Aligned_cols=100 Identities=10% Similarity=0.012 Sum_probs=51.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...|..+...+...|+++.|+..|+++.+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 334445555555555555555555555555443 3344555555555555555555555555555432 22344455555
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 048258 88 DGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.++...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-07 Score=73.21 Aligned_cols=128 Identities=11% Similarity=0.087 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALI 441 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (504)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555555666666666666666665542 2345566666666666666666666666666542 223455666666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 048258 442 KSGRFDEAKQTFLSMEQNGCNPDSYTSNL--ILETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 442 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 492 (504)
..|++++|...++++.+.. +.+...+.. .+..+...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777666542 223333322 2333556677777777766654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=70.76 Aligned_cols=119 Identities=8% Similarity=0.027 Sum_probs=68.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+...+..+...+...|+++.|...|+++.+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455556666666666666666666665543 3455566666666666666666666666665543 234555666666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLD 130 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (504)
++...|++++|...+++..+... .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666655531 234444445555444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-06 Score=75.16 Aligned_cols=166 Identities=9% Similarity=0.021 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--hhh
Q 048258 293 FNTLISGHCKDAEVHKTRELLVMLLECGFKPD-----KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVP---PN--TIT 362 (504)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 362 (504)
+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34445556666777777777766655422211 112333455567778889999888888753211 11 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCC-Ccc
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQA---D-RISP--DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG----LRP-DNF 431 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~ 431 (504)
++.+...|...|++++|...++++.+ . ...+ ...++..+..+|...|++++|...+++.++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 78888889999999999999988863 2 1111 12578888889999999999999998887531 111 145
Q ss_pred cHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 048258 432 SYSALIKALIKSGRFDEA-KQTFLSMEQ 458 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 458 (504)
+|..+..+|...|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 677888889999999999 777777653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.78 E-value=9e-08 Score=77.79 Aligned_cols=156 Identities=12% Similarity=-0.097 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHHhHHHHHHHHHhcC
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL----GY-APNVYTYTILIDGFCNAK 94 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g 94 (504)
+...|++++|.+.++.+... ......++..+...+...|++++|+..+++.... +. +....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35678888888855555432 1345667788888888889999888888887651 11 123456777777888888
Q ss_pred ChhhHHHHHHHHHHc----CCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCc--chhHHHHHHHHHhcC
Q 048258 95 RVAEVFRVLEIMKER----NVCP--NEATVRSLVHGVFRCLDPHKAFELLIRFMERE---PLT--QKLVCNTLLYRLSNN 163 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~ 163 (504)
++++|...+++..+. +..+ ....+..+...+...|++++|...+++..... ..+ ...++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888888888877653 1011 12346666777777788888877777765421 111 112334455555556
Q ss_pred CChHHHHHHHHHH
Q 048258 164 SMASEAAAILRKM 176 (504)
Q Consensus 164 ~~~~~a~~~~~~~ 176 (504)
|++++|.+.+++.
T Consensus 161 g~~~~A~~~~~~a 173 (203)
T 3gw4_A 161 KNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 6666665555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-08 Score=74.74 Aligned_cols=112 Identities=7% Similarity=-0.096 Sum_probs=76.6
Q ss_pred HHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 048258 32 KFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNV 111 (504)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 111 (504)
.|+++.... +.+...+..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|+..|++....+.
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344544443 3345566667777777788888888887777654 44666777777777777888888888777776642
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 112 CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
.+...+..+..++...|++++|.+.|++.....|
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3556667777777777777777777777766544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=7.5e-08 Score=82.64 Aligned_cols=196 Identities=9% Similarity=-0.019 Sum_probs=134.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 456788889999999999999999999998875 5588999999999999999999999999999875 45788899999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
.++...|++++|...|++..+.+.. +...+...+....+. .++... ..........+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 9999999999999999998875311 111111111111111 111111 11222222223333333322 2 368899
Q ss_pred HHHHHHHHHhhCCCCCChhhH-HHHHHHHHcc-CChhhHHHHHHHHHhc
Q 048258 168 EAAAILRKMGDRGYLPESSTF-DYTVTCLVTG-LDLNETCGILDTFIKR 214 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~-~~~~~a~~~~~~~~~~ 214 (504)
+|.+.++...+. .|+.... ..+...+.+. +.++++.++|..+.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999888765 4444333 3333344444 6688899999887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-07 Score=76.79 Aligned_cols=187 Identities=9% Similarity=-0.116 Sum_probs=86.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHHhHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCCh--------------
Q 048258 57 RIGVVDEALRLVKQMEGLGYAPNVYTYTIL-------IDGFCNAKRVAEVFRVLEIMKERNVCPNE-------------- 115 (504)
Q Consensus 57 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------- 115 (504)
..++...|.+.|.++.+.. +-....|..+ ..++.+.++..+++..+....+. .|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 4566777777777776653 3345566655 34444444555555444444331 1111
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC--h
Q 048258 116 --------ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE--S 185 (504)
Q Consensus 116 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 185 (504)
.....+...+...|++++|.+.|+.+...+|. +. ....+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 12223444555556666666666555544332 11 33334445555555666555555333221 010 1
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKP--RFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 133344444444455555555544444322112 2223344444444444555554444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.4e-08 Score=77.99 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=79.2
Q ss_pred cCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCH
Q 048258 302 KDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW----GV-PPNTITYNILIRSLCAIGDV 376 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 376 (504)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664444332 12234455666666666666666666666665541 11 11223455556666666666
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----cccHHHHHHHHHhcCC
Q 048258 377 ARSLRLFQKMQAD----RISP--DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RPD----NFSYSALIKALIKSGR 445 (504)
Q Consensus 377 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 445 (504)
++|...+++..+. +..+ ....+..+...+...|++++|...+++..+... ..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665432 1011 123455555566666666666666665553210 011 1123445555556666
Q ss_pred hhHHHHHHHHHHh
Q 048258 446 FDEAKQTFLSMEQ 458 (504)
Q Consensus 446 ~~~a~~~~~~~~~ 458 (504)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-07 Score=69.08 Aligned_cols=118 Identities=9% Similarity=0.052 Sum_probs=75.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 048258 359 NTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIK 438 (504)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 438 (504)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44456666667777777777777777766642 3355566667777777777777777777777642 234556666777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 439 ALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
++...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777777776642 223445555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.9e-08 Score=74.51 Aligned_cols=111 Identities=13% Similarity=0.058 Sum_probs=88.0
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 346 DCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
..++++.... +.+...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|...|+++++..
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555542 2345567778888899999999999999988763 4467788888889999999999999999998863
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 426 LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+.+...+..+..++...|++++|...|++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335677888888999999999999999998874
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.6e-08 Score=76.65 Aligned_cols=125 Identities=13% Similarity=0.085 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH-HHhcCCh--
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG-FCNAKRV-- 96 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 96 (504)
+...|+++.|+..++...+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777777777776654 5566777777777777777777777777776653 3356666666666 5667776
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
++|...++++.+.+. .+...+..+..++...|++++|...++++....|.
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 777777777776632 24556666677777777777777777777666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-07 Score=67.09 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 048258 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKAL 440 (504)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (504)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344555555555555555555555555432 2234455555555556666666666666555532 22344455555666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048258 441 IKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETL 475 (504)
Q Consensus 441 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (504)
...|++++|...++++.+.. +.+...+..+..++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 66666666666666665532 22333444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.8e-07 Score=74.04 Aligned_cols=191 Identities=7% Similarity=-0.110 Sum_probs=145.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCc------------
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNIL-------IHGICRIGVVDEALRLVKQMEGLGYAPN------------ 79 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------ 79 (504)
.+ ..++...|.+.|.++...+ +-....|..+ ...+.+.++..+++..+..-.+. .|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLY 91 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTT
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcc
Confidence 44 5899999999999999887 6678888887 56666666677777766665542 221
Q ss_pred ----------HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-
Q 048258 80 ----------VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT- 148 (504)
Q Consensus 80 ----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 148 (504)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.......+.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 2234456677889999999999999988754 444466677778999999999999998665432111
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHccCChhhHHHHHHHHHhcC
Q 048258 149 QKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE--SSTFDYTVTCLVTGLDLNETCGILDTFIKRG 215 (504)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (504)
....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 134677788999999999999999999975433253 3466777888999999999999999999874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.9e-07 Score=67.36 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=72.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
++..|......+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34556667777777788888888887777665 5567777777777777788888887777777664 345667777777
Q ss_pred HHHhcCChhhHHHHHHHHHHc
Q 048258 89 GFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~ 109 (504)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 777777777777777777665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-07 Score=80.97 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048258 220 FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISG 299 (504)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (504)
...+..++..+...|++++|...|..++...+. +...+..+..++.+.|++++|+..+++..+... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344555555666666666666666666555433 555566666666666666666666666655432 244555566666
Q ss_pred HhcCCchHHHHHHHHHHHHCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 300 HCKDAEVHKTRELLVMLLECGFKPDK-FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 378 (504)
+...|++++|...+....+.. |+. ..+...+....+ ..++.. +........+.+......+... ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 666666666666666554421 110 001011111111 111111 1112222233344333333222 2577777
Q ss_pred HHHHHHHHHhCCCCCCHH-hHHHHHHHHHcc-CCHHHHHHHHHHHHh
Q 048258 379 SLRLFQKMQADRISPDIY-TFNALIQSFCRM-NKIEKAEKAFFSMLT 423 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 423 (504)
|.+.+++..+. .|+.. ....+...+... +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777777664 34332 333333334443 557777777777664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-07 Score=81.05 Aligned_cols=132 Identities=13% Similarity=0.063 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 324 DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN--------------TITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
+...+..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++++.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455667777777788888888888888777532211 245555666666666666666666666554
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH-HHHHHHHH
Q 048258 390 RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEA-KQTFLSME 457 (504)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 457 (504)
. +.+...+..+..+|...|++++|...|+++++.. +.+...+..+..++...|++++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2344555555666666666666666666665542 12334455555555555555555 33444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-07 Score=74.49 Aligned_cols=119 Identities=10% Similarity=0.084 Sum_probs=52.5
Q ss_pred cCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCH--HH
Q 048258 302 KDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRS-LCAIGDV--AR 378 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 378 (504)
..|++++|...++...+.. +.+...+..+..+|...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3444555555555444332 1234444445555555555555555555554432 2233344444444 4444444 55
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 379 SLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
|...++++.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555544431 22233444444444455555555555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-07 Score=67.09 Aligned_cols=114 Identities=7% Similarity=0.026 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 2233344444444444444444444444444431 1123334444444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 443 SGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
.|++++|...+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 445555555544444431 123334444444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.9e-07 Score=79.71 Aligned_cols=150 Identities=11% Similarity=-0.037 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--------------HHhHHHHHHH
Q 048258 24 NSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--------------VYTYTILIDG 89 (504)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 89 (504)
++++.|+..|+...+.. +.+...+..+...+.+.|++++|+..|++..+...... ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554443321 23455666666667777777777777776665531111 3566667777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
|.+.|++++|+..++++.+.. +.+...+..+..++...|++++|.+.|++.++..|. +...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776653 235566666777777777777777777777766554 445666666666667776666
Q ss_pred -HHHHHHH
Q 048258 170 -AAILRKM 176 (504)
Q Consensus 170 -~~~~~~~ 176 (504)
...+..|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.9e-07 Score=65.58 Aligned_cols=100 Identities=8% Similarity=-0.056 Sum_probs=68.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHhHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAP--NVYTYTIL 86 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 86 (504)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556667777777777777777777776654 4456667777777777777777777777776653 33 46666667
Q ss_pred HHHHHhc-CChhhHHHHHHHHHHcC
Q 048258 87 IDGFCNA-KRVAEVFRVLEIMKERN 110 (504)
Q Consensus 87 ~~~~~~~-g~~~~a~~~~~~~~~~~ 110 (504)
..++... |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 7777777 77777777777776653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4e-05 Score=66.07 Aligned_cols=213 Identities=10% Similarity=0.022 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC--c
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNM----------MDRATEICREMRDRDIAPNLVTFNTLISGHCKDA--E 305 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 305 (504)
+|+..+..++..+|. +..+|+.--..+...+. +++++.+++.+....++ +..+|+.-...+...+ .
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCccc
Confidence 455555555555443 34444432222222221 45666666666655433 5555555555555555 3
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHR-FEDALDCLSEMVEWGVPPNTITYNILIRSLCAI----------- 373 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 373 (504)
+++++..++.+.+... -+...|+.-..++...|. ++++++.+..+++..+ -|...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccc
Confidence 5666666666665543 255555555555555565 4666777766666542 3555665555554443
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 048258 374 ---GDVARSLRLFQKMQADRISPDIYTFNALIQSFCRM-----------NKIEKAEKAFFSMLTLGLRPDNFSYSALIKA 439 (504)
Q Consensus 374 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (504)
+.++++++.+.+..... +-|...|+.+-..+... +.++++++.++++.+. .|+. .|..+..+
T Consensus 204 ~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~ 279 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTII 279 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHH
Confidence 33566666666666542 34555665554444433 3466777777777764 4553 34322222
Q ss_pred HH-----hcCChhHHHHHHHHHHh
Q 048258 440 LI-----KSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 440 ~~-----~~g~~~~a~~~~~~~~~ 458 (504)
+. ..|..+++...+.++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHH
Confidence 11 24556667777777766
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.8e-07 Score=67.44 Aligned_cols=98 Identities=8% Similarity=0.025 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCc----HHhHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APN----VYTYT 84 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 84 (504)
..+..+...+.+.|++++|+..|+++.+.+ |.+..+|..+..+|...|++++|++.+++..+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666777777777777777777777665 55666777777777777777777777777654320 011 23455
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.+..++...|++++|++.|++..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666666667777777777766654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-06 Score=63.64 Aligned_cols=98 Identities=12% Similarity=-0.015 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..+..+...+...|+++.|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4456666667777777777777777766554 4456666666667777777777777777766553 3345566666666
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 048258 90 FCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~ 109 (504)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66667777777777666654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-07 Score=69.77 Aligned_cols=96 Identities=8% Similarity=-0.099 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF 126 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (504)
.+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|+..|++..+.+. .++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 33444444455555555555555544432 22444444455555555555555555555544421 23334444455555
Q ss_pred hcCChHHHHHHHHHHHhc
Q 048258 127 RCLDPHKAFELLIRFMER 144 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (504)
..|++++|.+.|++....
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-07 Score=69.93 Aligned_cols=97 Identities=10% Similarity=-0.103 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGF 90 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
..+..+...+.+.|++++|+..|+++...+ +.+...|..+..++...|++++|+..|++..... +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345555666677777777777777766654 4566666667777777777777777777776654 33555666666677
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 048258 91 CNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~ 109 (504)
...|++++|...|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.6e-07 Score=66.96 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCC----cccHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL--RPD----NFSYSA 435 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 435 (504)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555532 22344555555555566666666665555554210 000 123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQNGCNPDSYT 467 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 467 (504)
+..++...|++++|++.|++.+.. .||+.+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 555556666666666666666552 344443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.7e-05 Score=64.72 Aligned_cols=231 Identities=7% Similarity=-0.100 Sum_probs=105.3
Q ss_pred HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC--
Q 048258 28 LAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV----------VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR-- 95 (504)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 95 (504)
+|+..++.+...+ |-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..++...|+
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 5555555555543 3344444433322222222 345555555555443 2344555554444444442
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLD-PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILR 174 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (504)
+++++..++.+.+... -|..+|+.-..++...|. ++++++.+++++...|. +..+|+.....+...+....+
T Consensus 126 ~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~----- 198 (331)
T 3dss_A 126 WARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS----- 198 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-------
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc-----
Confidence 4555555555555432 244455544444445554 35555555555555443 333443333222221000000
Q ss_pred HHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-----------CCcHHHHHHH
Q 048258 175 KMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKA-----------GRDVEGDRYL 243 (504)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~ 243 (504)
++ ..-...+.++++++.+....... +-|..+++-+-..+.+. +.++++++.+
T Consensus 199 --------~~--------~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 199 --------GP--------QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred --------cc--------ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 00 00000022445555555555442 33444443332222222 3456777777
Q ss_pred HHHHhCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhCC
Q 048258 244 NHVFKDRLVSNVNSYNMVID---CFCKVNMMDRATEICREMRDRD 285 (504)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~ 285 (504)
+++.+..+. +...+..++. .....+..+++...+.++.+.+
T Consensus 262 ~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 262 KELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 777776654 3333322221 2224566778888888887763
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=64.54 Aligned_cols=100 Identities=8% Similarity=-0.051 Sum_probs=80.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.+. .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 34567777888888899999999998888764 44677888888888888999999999988888742 35667888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 048258 124 GVFRCLDPHKAFELLIRFMERE 145 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
++...|++++|.+.|++.....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888887765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=8.1e-08 Score=77.72 Aligned_cols=151 Identities=9% Similarity=-0.057 Sum_probs=92.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----------------
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN---------------- 79 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------- 79 (504)
.+......|+++.+.+.|+...... ......+..+...+...|++++|+..|++..+... .+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHH
Confidence 3444555667777777666543321 22445667777888888899999998888876531 12
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 048258 80 VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYR 159 (504)
Q Consensus 80 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (504)
...+..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++.....|. +...+..+..+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 2567777777778888888888888887763 235667777777788888888888888887776554 44555555555
Q ss_pred HhcCCChHHHH
Q 048258 160 LSNNSMASEAA 170 (504)
Q Consensus 160 ~~~~~~~~~a~ 170 (504)
+...++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55544444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-06 Score=68.60 Aligned_cols=101 Identities=9% Similarity=-0.058 Sum_probs=81.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345667778888888888888888888888765 5577888888888888888888888888888764 44677888888
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~ 110 (504)
.+|...|++++|+..|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888888888888888887763
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-07 Score=67.54 Aligned_cols=110 Identities=6% Similarity=0.051 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCc----HHhH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APN----VYTY 83 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 83 (504)
+..|..+...+...|+++.|...|+++.+.. +.+...+..+...+...|++++|+..+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567777788888888888888888887665 55677777888888888888888888888766521 111 5667
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLV 122 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (504)
..+..++...|++++|.+.|+.+.+.. |+......+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 777777778888888888888877753 3544444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-07 Score=65.79 Aligned_cols=96 Identities=10% Similarity=-0.016 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
.+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666777777777777777776654 4566667777777777777777777777776654 335566666777777
Q ss_pred hcCChhhHHHHHHHHHHc
Q 048258 92 NAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~ 109 (504)
..|++++|+..+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=65.77 Aligned_cols=100 Identities=12% Similarity=-0.005 Sum_probs=57.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.++..|..+...+...|+++.|+..|+...+.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345555566666666666666666666655544 3445556666666666666666666666665543 23455555555
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 048258 88 DGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666655543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-06 Score=60.81 Aligned_cols=102 Identities=9% Similarity=-0.065 Sum_probs=75.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 34566677777888888888888888887653 34667777777788888888888888888877642 35566777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
++...|++++|.+.+++.....|.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC
Confidence 778888888888888877776554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.6e-07 Score=63.72 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=47.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--ChhhHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP--DSYTSNLILET 474 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 474 (504)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444444555555555555555555432 1233344445555555555555555555555431 12 24445555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 048258 475 LVQQ-GRFEEAHDIVKTSKER 494 (504)
Q Consensus 475 ~~~~-g~~~~a~~~~~~~~~~ 494 (504)
+... |++++|.+.++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=70.45 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048258 396 YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETL 475 (504)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (504)
..+..+..+|...|++++|...++++++.. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 455566666666667777777666666642 2334556666666666777777777776666542 22445556666666
Q ss_pred HhcCCHHHHH-HHHHHHHHc
Q 048258 476 VQQGRFEEAH-DIVKTSKER 494 (504)
Q Consensus 476 ~~~g~~~~a~-~~~~~~~~~ 494 (504)
...++.+++. ..+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 6665555555 444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-06 Score=66.10 Aligned_cols=105 Identities=12% Similarity=-0.001 Sum_probs=89.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
+.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+... .+...+..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 3456778888889999999999999999998874 44788899999999999999999999999988752 357788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCc
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLT 148 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (504)
..++...|++++|.+.|++.+...|..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999988876653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.7e-06 Score=63.86 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=82.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 048258 357 PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSAL 436 (504)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 436 (504)
+.+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++++++.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3466788888889999999999999999988763 4457788888888999999999999999988863 3346678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 048258 437 IKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
..++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.8e-06 Score=63.37 Aligned_cols=98 Identities=10% Similarity=-0.073 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD----RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYT 84 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
+...+..+...+...|+++.|+..|++..+.. |+ ...+..+...+...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34445555555555555555555555555442 22 3444445555555555555555555554432 22344444
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4555555555555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.5e-06 Score=61.66 Aligned_cols=103 Identities=12% Similarity=-0.037 Sum_probs=85.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN----VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEAT 117 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 117 (504)
+.+...+..+...+...|++++|+..|++..+.. |+ ...+..+..+|...|++++|+..+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 4467788888899999999999999999998863 44 6778888888999999999999999988774 235677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 118 VRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+..+..++...|++++|...|++.....|.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 888888899999999999999998877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=65.07 Aligned_cols=96 Identities=11% Similarity=0.155 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCC----cccHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL--RPD----NFSYSA 435 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 435 (504)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554432 22344455555555555555555555555544310 011 334455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
+..++...|++++|.+.++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55556666666666666666655
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-06 Score=62.24 Aligned_cols=97 Identities=9% Similarity=-0.035 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.+. .+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4556667778888888888888887764 34677777888888888888888888888877642 355677777778888
Q ss_pred cCChHHHHHHHHHHHhcCC
Q 048258 128 CLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~ 146 (504)
.|++++|...+++.++..|
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 8888888888887776544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.7e-05 Score=70.68 Aligned_cols=165 Identities=8% Similarity=-0.027 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCh----hhHHHHHHHHhcCCchHHHHHHHHHHHH----CCCCc-cHHH
Q 048258 258 YNMVIDCFCKVNMMDRATEICREMRDRD-IAPNL----VTFNTLISGHCKDAEVHKTRELLVMLLE----CGFKP-DKFT 327 (504)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 327 (504)
+..+...|...|++++|.+.+..+...- ..++. .+.+.+...+...|+.+.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444555555555555555555443320 00011 1112222233344555555555544432 11111 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HH
Q 048258 328 FNSMIDCLCRAHRFEDALDCLSEMVEW--GV--PP-NTITYNILIRSLCAIGDVARSLRLFQKMQAD----RISPD--IY 396 (504)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~ 396 (504)
+..+...+...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++.... ..++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 455555566666666666666555431 00 11 1224555555666666666666666554431 11111 12
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSML 422 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 422 (504)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444555566666655554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.5e-06 Score=60.56 Aligned_cols=95 Identities=11% Similarity=-0.107 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---HHhHHHH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDR---FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN---VYTYTIL 86 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 86 (504)
+..+...+.+.|+++.|...|+.+.+.. +.+. ..+..+..++...|++++|+..|+++.+.. +.+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 3445666777777778877777777653 2233 466666777777777777777777776653 222 4556666
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
..++...|++++|...|+.+.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-05 Score=74.30 Aligned_cols=198 Identities=10% Similarity=0.002 Sum_probs=107.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHhcCCchHHHHHHHHHHHHCC-CCc
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRDIAPNL----------------VTFNTLISGHCKDAEVHKTRELLVMLLECG-FKP 323 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 323 (504)
-.+.+.+.|++++|++.|..+.+....... .++..+...|...|++++|.+.+..+.+.- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345677889999999999998876432111 124556666777777777777666654311 011
Q ss_pred cHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 048258 324 DKF----TFNSMIDCLCRAHRFEDALDCLSEMVEW----GVPP-NTITYNILIRSLCAIGDVARSLRLFQKMQAD----R 390 (504)
Q Consensus 324 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 390 (504)
+.. +.+.+...+...|+++.|..+++..... +..+ -..++..+...+...|++++|..+++++... +
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 1222222333456667776666665431 1111 2335556666666677777776666665432 1
Q ss_pred CCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCC-C-C--cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 391 ISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL--GLR-P-D--NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 391 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
-.+ ....+..++..|...|++++|..++++.... .+. | . ...+..++..+...|++++|...+.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 1335566666666667777776666665532 111 1 0 12334444445556666666666666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-06 Score=78.25 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+..++..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444556778899999999999998875 5678899999999999999999999999999875 4567889999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNVCPNEATVRSLVHG--VFRCLDPHKAFELLI 139 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 139 (504)
.|++++|++.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988742 233455555555 778899999999888
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.8e-06 Score=63.10 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--------C---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVD--------Q---------CKPDRFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
+..+......+.+.|+++.|+..|.+..+. . .+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677788888999999999999888764 1 02233566667777777777777777777776
Q ss_pred hCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 73 GLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 345667777777777777777777777777765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=59.52 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----cccHHH
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDI---YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD----NFSYSA 435 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ 435 (504)
+..+...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++.+.. |+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 4456677788899999999998888753 2223 467777888888899999999998888753 33 445677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+..++...|++++|...++++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888889999999999888875
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.6e-06 Score=63.67 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCK-PD----RFTYNILIHGICRIGVVDEALRLVKQMEGL----GYAP-NV 80 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 80 (504)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777777777777777777776543100 11 135566666777777777777777765432 1000 13
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHcC----CC-CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERN----VC-PNEATVRSLVHGVFRCLDPHKAFELLIRFM 142 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (504)
.++..+...+...|++++|...+++..+.. .. .....+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345556666666777777777666655321 00 011234444555555555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-06 Score=65.52 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----cc
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRI---SP--DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RPD----NF 431 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~ 431 (504)
++..+...+...|++++|...+++..+... .+ ....+..+...+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555555555555555443200 00 012455566666666777777766666554210 011 23
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQN----GCNP-DSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.+..+...+...|++++|...+++..+. +..+ ...++..++..+...|++++|.+.++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556667777777888877777776532 1111 1345667788888888888888888887754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-06 Score=75.54 Aligned_cols=150 Identities=12% Similarity=0.084 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------hhhHHHHHHHH
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN--------------TITYNILIRSL 370 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 370 (504)
++++|...++...+.. +-....+..+...+.+.|++++|+..|+++++...... ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444332211 11345677777888888999999999988887532211 45677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 048258 371 CAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (504)
.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|+++++.. +.+...+..+..++.+.++++++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888877777777653 3356677777777777777777777777777652 223455666666777777666654
Q ss_pred H-HHHHHH
Q 048258 451 Q-TFLSME 457 (504)
Q Consensus 451 ~-~~~~~~ 457 (504)
+ .++.|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 3 344444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=71.89 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhh----------------CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSV----------------DQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG 75 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 75 (504)
.|..+...+.+.|+++.|+..|+++.+ .. +.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 356667777777888888877777765 11 2234455555555566666666666666665543
Q ss_pred CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 048258 76 YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH 132 (504)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (504)
+.+...|..+..+|...|++++|+..|+++.+... .+...+..+..++...++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 23455555555556666666666666665555421 13334444444444433333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=74.30 Aligned_cols=151 Identities=9% Similarity=-0.035 Sum_probs=96.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---------------HHhHHHHH
Q 048258 23 SNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN---------------VYTYTILI 87 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~ 87 (504)
.++++.|+..|+...+.. +.....|..+...+.+.|++++|+..|++..+.. +.+ ...|..+.
T Consensus 247 l~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHH
Confidence 344555555554443332 2345566667777777777777777777766542 112 46677777
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
.+|.+.|++++|+..++++.+... .+...+..+..+|...|++++|...|++.++..|. +...+..+..++...++.+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888777642 35667777777888888888888888887777654 4566667777777777776
Q ss_pred HHHH-HHHHHh
Q 048258 168 EAAA-ILRKMG 177 (504)
Q Consensus 168 ~a~~-~~~~~~ 177 (504)
++.+ .+..|.
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 6653 445554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.6e-06 Score=61.86 Aligned_cols=86 Identities=10% Similarity=-0.097 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHH
Q 048258 23 SNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVF 100 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 100 (504)
.|++++|+..|+++.+.+ -+.+..++..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466677777777776652 13345556666667777777777777777776653 334666666667777777777777
Q ss_pred HHHHHHHHc
Q 048258 101 RVLEIMKER 109 (504)
Q Consensus 101 ~~~~~~~~~ 109 (504)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=4.5e-05 Score=57.03 Aligned_cols=109 Identities=12% Similarity=-0.027 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHHHHH
Q 048258 340 RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCR----MNKIEKAE 415 (504)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 415 (504)
++++|+..|++..+.+. ++. . +...|...+..++|.+.|++..+.+ +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34555555555554431 111 1 4444444444555555555554432 33444444444444 44555555
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhc
Q 048258 416 KAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 459 (504)
.+|++..+.| +...+..+...|.. .+++++|.+++++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555555433 23334444444444 44455555555555444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=71.55 Aligned_cols=91 Identities=8% Similarity=0.042 Sum_probs=64.7
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048258 394 DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILE 473 (504)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 473 (504)
+...|..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|+..++++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777778888888888888888888753 2345667777788888888888888888887752 225556666777
Q ss_pred HHHhcCCHHHHHH
Q 048258 474 TLVQQGRFEEAHD 486 (504)
Q Consensus 474 ~~~~~g~~~~a~~ 486 (504)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=6.2e-06 Score=76.42 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=72.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHH
Q 048258 334 CLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEK 413 (504)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (504)
.+.+.|++++|+..+++..+.. +.+...|..+..++.+.|++++|+..++++.+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4456677777777777776652 3346667777777777777777777777777653 3345566777777777777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHH--HHhcCChhHHHHHHH
Q 048258 414 AEKAFFSMLTLGLRPDNFSYSALIKA--LIKSGRFDEAKQTFL 454 (504)
Q Consensus 414 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 454 (504)
|.+.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777642 1223344444444 666677777777776
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-05 Score=59.60 Aligned_cols=62 Identities=24% Similarity=0.067 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCC-ChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQN-----GCNP-DSYTS----NLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.|..+..++.+.|++++|+..+++.++. .+.| +...| ...+.++...|++++|...|+++.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555566666666666666665552 0134 23355 5666666666666666666666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-05 Score=60.52 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=80.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGL--------G---------YAPNVYTYTILIDGFCNAKRVAEVFRVLEIM 106 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 106 (504)
....+......+.+.|++++|+..|++.... . .+.+...|..+..+|.+.|++++|+..++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888999999999999999998764 0 0223457777888888888888888888888
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 107 KERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
.+.+ +.+...+..+..++...|++++|...|++.+...|.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 8774 335667888888888888888888888888877654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-05 Score=58.83 Aligned_cols=97 Identities=15% Similarity=0.053 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-----CH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCK-P-----DR-----FTYNILIHGICRIGVVDEALRLVKQMEGL----- 74 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 74 (504)
..+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556667777788888888888887765311 0 11 25566666666666666666666665553
Q ss_pred --CCCCcHHhH----HHHHHHHHhcCChhhHHHHHHHHHH
Q 048258 75 --GYAPNVYTY----TILIDGFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 75 --~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (504)
. +-+...| .....++...|++++|+..|++..+
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 2234445 5555555555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.9e-06 Score=59.24 Aligned_cols=86 Identities=12% Similarity=0.007 Sum_probs=56.2
Q ss_pred cCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048258 198 GLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRAT 275 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (504)
.|++++|+..+++.++.+ .+.+...+..+..++...|++++|...++++++..+. +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777666653 1334556677777777777777777777777766554 5666777777777777777777
Q ss_pred HHHHHHHhC
Q 048258 276 EICREMRDR 284 (504)
Q Consensus 276 ~~~~~~~~~ 284 (504)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.9e-06 Score=72.82 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHH-H
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYR-L 160 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 160 (504)
.|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|.+.|++.....|. +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 56667777777788888888877777663 235567777777777888888888888777766554 33444444443 2
Q ss_pred hcCCChHHHHHHHHHHhhC
Q 048258 161 SNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~ 179 (504)
...+..+++...|.++...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3345566677777777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.3e-06 Score=59.06 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=65.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-------H
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN-------V 80 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~ 80 (504)
++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 345667777788888888888888888877665 5567777778888888888888888888887663 33 4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLE 104 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~ 104 (504)
..+..+..++...|+++.|...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHH
Confidence 455555555555565555544433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00025 Score=66.96 Aligned_cols=173 Identities=11% Similarity=-0.006 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc----------hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-
Q 048258 271 MDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE----------VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAH- 339 (504)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 339 (504)
.++|++.++.+...++. +..+|+.--..+...++ ++++.+.++.+.+...+ +..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34556666665555322 33444443333333333 66667777766665433 5556666666666666
Q ss_pred -CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc---------
Q 048258 340 -RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG-DVARSLRLFQKMQADRISPDIYTFNALIQSFCRM--------- 408 (504)
Q Consensus 340 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 408 (504)
+++++++.++++.+... -+..+|+.-..++.+.| .++++++.++++.+.. +-+...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 55777777777777643 36667777666666777 6777777777777654 33556666655555442
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 048258 409 -----NKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDE 448 (504)
Q Consensus 409 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (504)
+.++++.+.+.+++... +-+...|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888888753 3345667766666666665433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00018 Score=53.66 Aligned_cols=110 Identities=15% Similarity=0.016 Sum_probs=59.1
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA----IGDVARSL 380 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 380 (504)
++++|.+.|++..+.|. ++.. +...|...+.+++|+..|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 44555555555555442 1221 4444444455555666666555543 44455555555555 55666666
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 048258 381 RLFQKMQADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 425 (504)
..|++..+.+ +...+..|...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 44445555555555 556666666666666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-05 Score=70.03 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 398 FNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 398 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|+++.+
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444431 11233444444444444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00025 Score=66.96 Aligned_cols=125 Identities=8% Similarity=-0.069 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC--
Q 048258 27 DLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV----------VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK-- 94 (504)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 94 (504)
++|+..++.+...+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.|
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 34455555555443 3344445444444444444 555555555555443 224445555444444555
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCcchhHHHH
Q 048258 95 RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL-DPHKAFELLIRFMEREPLTQKLVCNT 155 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (504)
+++++++.++++.+.+. -+..+|.....++.+.| .++++++.++++++..+. +..+|+.
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~ 183 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHY 183 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHH
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHH
Confidence 34555555555555432 24444544444444444 455555555555544433 3333433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-05 Score=71.55 Aligned_cols=124 Identities=9% Similarity=0.052 Sum_probs=67.8
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CC---CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCC----cccHHH
Q 048258 370 LCAIGDVARSLRLFQKMQAD---RI---SP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL---GLRPD----NFSYSA 435 (504)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~---~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~ 435 (504)
+...|++++|+.++++..+. -+ .| ...+++.|..+|...|++++|..++++.++. -+.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655432 01 11 1335666666666666666666666665531 11122 234566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh-----cCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQ-----NGC-NP-DSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
|...|...|++++|..+++++.+ .|. .| ...+...+..++...+.+++|+.++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777776666666542 121 11 122344555666666777777777777665
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.98 E-value=6.7e-05 Score=51.16 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555555555666666666665555443 3345555555555555566666665555555442 2234444444443
Q ss_pred H
Q 048258 90 F 90 (504)
Q Consensus 90 ~ 90 (504)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.94 E-value=4e-05 Score=55.21 Aligned_cols=80 Identities=10% Similarity=-0.026 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048258 28 LAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (504)
.|+..|++..+.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677777777665 5577888888888888888888888888888764 4457778888888888888888888888877
Q ss_pred Hc
Q 048258 108 ER 109 (504)
Q Consensus 108 ~~ 109 (504)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-05 Score=57.42 Aligned_cols=99 Identities=4% Similarity=-0.056 Sum_probs=75.7
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVV----------DEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
..+.+.+++|++.++...+.+ +.+...|..+..++...+++ ++|+..|++..+.. +.+..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 345677899999999998876 67888898888888887765 58999999988875 3467788888888
Q ss_pred HHhcC-----------ChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 048258 90 FCNAK-----------RVAEVFRVLEIMKERNVCPNEATVRSLV 122 (504)
Q Consensus 90 ~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (504)
|...| ++++|++.|++..+. .|+...|...+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88764 788888888888876 45555444333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.7e-05 Score=54.88 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 395 IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
...+..+...+...|++++|...|+++++.. +.+...+..+..++...|++++|+..+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344555555555666666666666555542 22344455555556666666666666666655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=9.9e-05 Score=67.93 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEM 351 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (504)
+++.+..+|...|++++|..++++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444444444555555554444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00021 Score=48.61 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=46.1
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048258 395 IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILET 474 (504)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 474 (504)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455555566666666666666666666542 2234455566666666666666666666666542 2234455555555
Q ss_pred HHh
Q 048258 475 LVQ 477 (504)
Q Consensus 475 ~~~ 477 (504)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=4.3e-05 Score=57.32 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 048258 338 AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGD 375 (504)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (504)
.+.+++|+..++...+.. +.+...|..+..++...++
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcc
Confidence 344555555555555543 3345555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00025 Score=50.96 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 378 RSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
.|...|+++.+.. +.+...+..+...+...|++++|...|+++++.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778888888763 4467788899999999999999999999999863 3346678889999999999999999999988
Q ss_pred hc
Q 048258 458 QN 459 (504)
Q Consensus 458 ~~ 459 (504)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.69 E-value=2.1e-07 Score=81.72 Aligned_cols=215 Identities=12% Similarity=0.089 Sum_probs=137.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
.+.+|+.+.++..+.+...+|+.-|-+ ..|+..|..++.+..+.|.+++-+..+.-.++. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 345788888888888888888765433 236667888899988999999998888777665 345566678888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--------------------CCCc
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER--------------------EPLT 148 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~ 148 (504)
+|++.++..+..+++. .||..-...+..-|...|.++.|.-+|..+... ....
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8998888665443321 255555666677777777777666555443221 1123
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHH
Q 048258 149 QKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLME 228 (504)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (504)
+..+|..+-.+|...+++.-|.-.--.+.- ....+..++..|-..|-+++.+.+++..... -......|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 556677777777777777666554333332 1222334555667777888888888776643 1345566777766
Q ss_pred HHHhcCCcHHHHHHHHH
Q 048258 229 ALYKAGRDVEGDRYLNH 245 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~ 245 (504)
.|++- ++++..+.++.
T Consensus 272 LYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHSS-CTTHHHHHHTT
T ss_pred HHHhc-CHHHHHHHHHH
Confidence 66654 45555555444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00025 Score=49.38 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=32.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (504)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555555555443 22344455555555555555555555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0009 Score=57.99 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=45.9
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 048258 112 CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTF 188 (504)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (504)
+.++.++..+...+...|++++|...+++.+..++ +...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM--SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 34555666666556666777777777777776653 4445555566666777777777777776654 3444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00028 Score=49.10 Aligned_cols=65 Identities=17% Similarity=0.047 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 73 (504)
-++..+..+...+.+.|++++|+..|+++.+.+ +.+..+|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677778888888888888888888887765 45667778888888888888888888887764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0025 Score=43.28 Aligned_cols=67 Identities=10% Similarity=-0.042 Sum_probs=40.3
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 7 SPSTRLYNAVIDALVKSNS---IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
+.|+..+..+..++...++ .++|..++++..+.+ +.++.+...+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455556666665544433 566666666666655 445566666666666666666666666666655
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0015 Score=59.02 Aligned_cols=62 Identities=3% Similarity=-0.140 Sum_probs=30.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh-----cCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQ-----NGC-NP-DSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+++.+..+|...|++++|..++++.++ .|. .| ...+++.++..|..+|++++|..+++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345555555555555555555555442 110 11 122455555555555555555555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0056 Score=53.10 Aligned_cols=144 Identities=14% Similarity=0.031 Sum_probs=86.2
Q ss_pred CccHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cC--CHHH---HHHHHHHHHh
Q 048258 322 KPDKFTFNSMIDCLC--RAH---RFEDALDCLSEMVEWGVPPNTITYNILIRSLCA---IG--DVAR---SLRLFQKMQA 388 (504)
Q Consensus 322 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g--~~~~---a~~~~~~~~~ 388 (504)
+.+...|..++.+.. ..+ +..+|+.+|++.++.. |-....|..+..+|.. .+ .... ....++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 456667777766543 333 3577888888888763 2233455544444431 11 1111 1111221111
Q ss_pred C-CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 048258 389 D-RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYT 467 (504)
Q Consensus 389 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 467 (504)
. ..+.+..++..+...+...|++++|...+++++..+ |+...|..+...+...|++++|.+.++++... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 124556677777666666788888888888888764 66666667777778888888888888888774 566666
Q ss_pred HHH
Q 048258 468 SNL 470 (504)
Q Consensus 468 ~~~ 470 (504)
|..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0041 Score=46.12 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHhcCChhHHH
Q 048258 376 VARSLRLFQKMQADRISPDIYTFNALIQSFCRMN---KIEKAEKAFFSMLTLGLRP--DNFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 450 (504)
...+.+-|.+....+ +++..+.-.+..++++.+ +.+++..++++..+.. .| +...+-.+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445555666555544 356666666666677666 4557777777777653 23 2344455566667777777777
Q ss_pred HHHHHHHhcCCCCCh
Q 048258 451 QTFLSMEQNGCNPDS 465 (504)
Q Consensus 451 ~~~~~~~~~~~~~~~ 465 (504)
+.++.+++. .|+.
T Consensus 92 ~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 92 KYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHhc--CCCC
Confidence 777777763 5543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0039 Score=42.98 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRF-TYNILIHGICRIGVVDEALRLVKQMEGLG 75 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 75 (504)
....+.+.|++++|+..|+++.+.. +.+.. .+..+..++...|++++|++.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5567788899999999999888765 55667 88888888888999999999999888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00064 Score=47.07 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNF-SYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
.+...|++++|...++++++.. +.+.. .+..+..++...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555554431 11223 444445555555555555555555554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0056 Score=41.51 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=45.3
Q ss_pred CCCHHhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 392 SPDIYTFNALIQSFCRMNK---IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+.+...+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456666666666654443 577888888877753 223555666677777788888888888887765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0019 Score=58.36 Aligned_cols=86 Identities=13% Similarity=0.007 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHhHHHHHH
Q 048258 338 AHRFEDALDCLSEMVEW---GVPPN----TITYNILIRSLCAIGDVARSLRLFQKMQAD-----R-ISPD-IYTFNALIQ 403 (504)
Q Consensus 338 ~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~ 403 (504)
.|++++|+.++++..+. -..|+ ..+++.+..+|...|++++|+.+++++.+. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665431 11111 235666666666666666666666665431 1 1222 235666666
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 048258 404 SFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~ 423 (504)
.|...|++++|..+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666666553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0034 Score=56.85 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=56.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----cHHhHHHHHHHHHhcCChhhHHHHHHHHHHc-----C-CCCC-hhh
Q 048258 52 IHGICRIGVVDEALRLVKQMEGLG---YAP----NVYTYTILIDGFCNAKRVAEVFRVLEIMKER-----N-VCPN-EAT 117 (504)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~ 117 (504)
+..+..+|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++.... | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777777765431 111 2346677777777777777777777766532 2 1122 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 048258 118 VRSLVHGVFRCLDPHKAFELLIRFME 143 (504)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (504)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66677777777777777777776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.054 Score=45.03 Aligned_cols=93 Identities=13% Similarity=-0.069 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC-CCh
Q 048258 96 VAEVFRVLEIMKERNVCPN---EATVRSLVHGVFRC-----LDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN-SMA 166 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 166 (504)
...|...+++..+.. |+ ...+..+...|... |+.++|.+.|++.+...|..+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 567777888888763 44 45788888888884 89999999999999988865677777788888874 889
Q ss_pred HHHHHHHHHHhhCCCC--CChhhHHH
Q 048258 167 SEAAAILRKMGDRGYL--PESSTFDY 190 (504)
Q Consensus 167 ~~a~~~~~~~~~~~~~--~~~~~~~~ 190 (504)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999998887655 55444433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0043 Score=56.22 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 048258 433 YSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
++.+...|...|++++|..+++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444444444455555544444444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.044 Score=54.80 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=23.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 336 CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKM 386 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 386 (504)
...|+++.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555543221 24445555555555555555555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.023 Score=41.52 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=53.3
Q ss_pred CCChhhHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH-hHHHHHHH---H---HccCCHHHHHHHHHHHHh
Q 048258 357 PPNTITYNILIRSLCAIGDV------ARSLRLFQKMQADRISPDIY-TFNALIQS---F---CRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~---~---~~~g~~~~a~~~~~~~~~ 423 (504)
+.|..+|-..+....+.|++ ++..++|+++... ++|+.. .|...+.. | ...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34556666666666666766 6666666666654 444421 22222221 1 133556666666666654
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 048258 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 460 (504)
..-+- ...|......-.++|+...|++++.+.+..+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 31111 3344444444455666666666666666544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.026 Score=46.87 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHh-cCC
Q 048258 377 ARSLRLFQKMQADRISPD---IYTFNALIQSFCR-----MNKIEKAEKAFFSMLTLGLRP--DNFSYSALIKALIK-SGR 445 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~g~ 445 (504)
..|...++++.+. .|+ ...|..+...|.. -|+.++|.+.|++.++. .| +..++..+...++. .|+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCC
Confidence 3444444444443 233 3344455555544 25555555555555553 23 23444444444444 255
Q ss_pred hhHHHHHHHHHHhc
Q 048258 446 FDEAKQTFLSMEQN 459 (504)
Q Consensus 446 ~~~a~~~~~~~~~~ 459 (504)
.+++.+.+++.+..
T Consensus 256 ~~~a~~~L~kAL~a 269 (301)
T 3u64_A 256 RAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 55555555555553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.024 Score=42.06 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhcCChhhHH
Q 048258 26 IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG---VVDEALRLVKQMEGLGYAP--NVYTYTILIDGFCNAKRVAEVF 100 (504)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 100 (504)
...+.+.|+...+.+ +++..+...+..++++.+ +.++++.+++...+.+ .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555555544 456666666666666666 4457777777766653 23 2344444555566777777777
Q ss_pred HHHHHHHHc
Q 048258 101 RVLEIMKER 109 (504)
Q Consensus 101 ~~~~~~~~~ 109 (504)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.25 Score=49.27 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=99.8
Q ss_pred HHHHHhcCCHHHHHH-HHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 17 IDALVKSNSIDLAYL-KFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
.......++++.|.+ ++..+. +......++..+.+.|.++.|+++.+. |... .......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~~~-----f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-------QDQK-----FELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HHHH-----HHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-------cchh-----eehhhhcCC
Confidence 455567899999877 542222 123337778888889999998876531 1111 233456799
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...+...|+.+...++-+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 99998886443 3678899999999999999999999988643 33444555556766665555544
Q ss_pred HhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 048258 176 MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDT 210 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (504)
....| -++....++.+.|++++|++++.+
T Consensus 733 a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 44332 233344455556666666666543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.027 Score=41.09 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=54.7
Q ss_pred CCChhhHHHHHHHHHhcCCH------HHHHHHHHHhhhCCCCCCHH-hHHHHHHH------HHhcCCHHHHHHHHHHHHh
Q 048258 7 SPSTRLYNAVIDALVKSNSI------DLAYLKFQQMSVDQCKPDRF-TYNILIHG------ICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~a~~~~~~~~~ 73 (504)
+.|..+|-..+...-+.|++ +..+.+|+++...- +|+.. .|..-+.. +...++.++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34566777777777777777 77777777766532 44321 11111111 1223566666666666644
Q ss_pred CCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 048258 74 LGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNV 111 (504)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 111 (504)
.+ +-=...|....+.-.+.|+...|.+++......+.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 32 22244555555555556666666666666655543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.18 Score=38.43 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=87.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
-+....+.|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... +..+.-.|...|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 346677889999999887765 2678899999999999999999999888763 4444455666788
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
.+...++-+....+|- ++.....+...|+++++.++|.+.-. +...+......|..+.|.++...
T Consensus 76 ~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777766666555531 34445556677888888888755321 11111122235666677777666
Q ss_pred H
Q 048258 176 M 176 (504)
Q Consensus 176 ~ 176 (504)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.026 Score=39.25 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQ------CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
++.-+..+...+.+.|++..|...|+.+.+.. -.+....+..+..++.+.|+++.|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666666666666666666655421 0223445555555566666666666666655543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.03 Score=38.87 Aligned_cols=63 Identities=8% Similarity=-0.157 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLG------YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (504)
.-+-.+...+.+.|++..|...|+...+.- -.+...++..+..++.+.|+++.|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555544320 012333444444444444444444444444444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.2 Score=38.20 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=83.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHH
Q 048258 334 CLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEK 413 (504)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (504)
...+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888877665 2566788888888888888888888877653 3445555666777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 414 AEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 414 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
..++-+.....| -++....++...|+++++.+++.+.-. .|. -.-.....|-.+.|.++.+.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 776666665544 245556667778888888887754432 111 111122346677777776655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.027 Score=40.04 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCC--CcccHHHHHHHHHhcCChhHH
Q 048258 375 DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEK---AEKAFFSMLTLGLRP--DNFSYSALIKALIKSGRFDEA 449 (504)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 449 (504)
....+.+-+.+....+ .++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444444444444333 2444444445555555554444 555555555542 12 122333444555666666666
Q ss_pred HHHHHHHHh
Q 048258 450 KQTFLSMEQ 458 (504)
Q Consensus 450 ~~~~~~~~~ 458 (504)
++.++.+++
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.01 E-value=1.4 Score=43.71 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (504)
|..++++..+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555666666666666666665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.29 Score=35.01 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048258 430 NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 496 (504)
....+..++.+...|+-++-.+++..+... -+|++.....+..+|.+.|+..+|.++++++=++|.
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444455555555555555555554332 245555555555555555555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0038 Score=55.57 Aligned_cols=218 Identities=11% Similarity=0.008 Sum_probs=138.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
-|+..|..++.+..+.|.+++-+..+....+. ..++..=+.|+-+|++.++..+-.++ .. .||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEef----l~---~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTST----TS---CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHH----Hc---CCCcccHHHHH
Confidence 46667889999999999999999988777765 33445557889999999887654332 21 35555555666
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC--------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERN--------------------VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+-|...|.++.|.-+|..+.... -.-++.+|..+..+|...+++.-|.-.--.++-....
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade 231 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE 231 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH
Confidence 66666666666666555432110 0236678888888999988888776554444432211
Q ss_pred cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc-CCCc------cH
Q 048258 148 TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR-GVKP------RF 220 (504)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~ 220 (504)
...++..|-..|.+++-+.+++.-... -+.....|+.+.-.|++- +.++..+-++....+ +++. ..
T Consensus 232 -----L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 232 -----LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp -----CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred -----HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 123556677888899888888887643 234666788887777765 344444444332222 2221 23
Q ss_pred HHHHHHHHHHHhcCCcHHHHH
Q 048258 221 STYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~ 241 (504)
..|..++..|..-.+++.|..
T Consensus 305 hLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHhcchhHHHHHH
Confidence 446666666776666666543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.23 Score=35.35 Aligned_cols=83 Identities=13% Similarity=0.056 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--cHHhHHHHHHHHHhcCChhhH
Q 048258 25 SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE---ALRLVKQMEGLGYAP--NVYTYTILIDGFCNAKRVAEV 99 (504)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 99 (504)
....+...|+.....+ .++..+--.+..++.+..+... ++.+++.+...+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3334444444443333 3444444444445554444433 555555554432 12 122222233334455555555
Q ss_pred HHHHHHHHHc
Q 048258 100 FRVLEIMKER 109 (504)
Q Consensus 100 ~~~~~~~~~~ 109 (504)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.63 Score=33.35 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
..+...+......|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33344444444444444444444443321 24444444455555555555555555554444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.85 Score=33.12 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=40.4
Q ss_pred CCCHHhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 048258 392 SPDIYTFNALIQSFCRMNK---IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS 465 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 465 (504)
.|+..+--.+..++.++.+ ..++..+++.+.+.+..-.....-.+.-++.+.|++++|++..+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555554455555555554 345666666666542111233344455567777777777777777776 35544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.44 Score=34.09 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 413 KAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 413 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
+++.+++++.+.+..-....+-.+.-++.+.|++++|++..+.+++
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445555544432101122333444445555555555555555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.18 E-value=5 Score=39.94 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 73 (504)
|..+++...+.++.+.+.++|+.+..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455566666777777777776653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.73 Score=34.52 Aligned_cols=120 Identities=7% Similarity=-0.102 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQ-CKPDR-------FTYNILIHGICRIGVVDEALRLVKQMEGLG--YAPNVY 81 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~ 81 (504)
.+-.-++.+...|.++.|+-+.+.+.... .+|+. .++..+..++...|++.+|...|++..+.. +..+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45556778888899999988887765431 12331 245667788888999999999999864321 111111
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
+...+. ....... ......+...-..+..+|.+.+++++|+.+++.+...
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111110 0000000 0112234455556778888888888888888876544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.34 Score=43.16 Aligned_cols=73 Identities=10% Similarity=0.067 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhHH
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE-----RNVCPNEATVR 119 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 119 (504)
.+...++..+...|++.+|+..++.+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345667788888999999998888887764 56788999999999999999999999988754 48888887644
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.09 E-value=1.6 Score=42.43 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=37.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 438 KALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
..|...|+++-|.++.++.+.. .+.+..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455677777777777777764 2335667777777777777777777777766
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.03 E-value=1.3 Score=29.69 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 048258 410 KIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLIL 472 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 472 (504)
+.=+..+-++.+....+.|++.+..+.+.+|.+.+++..|+++++-...+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 44455666666666666677777777777777777777777777666644 223344455444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.89 E-value=5.3 Score=36.25 Aligned_cols=190 Identities=12% Similarity=0.055 Sum_probs=98.4
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHH----hc
Q 048258 268 VNMMDRATEICREMRDR-----DIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLC----RA 338 (504)
Q Consensus 268 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 338 (504)
.|+++.|++.+-.+.+. +..........++..|...++++...+.+..+.+..... ......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888777665532 233345567778888888888888877776665432221 222233333222 22
Q ss_pred CCHHHHH--HHHHHHHH--CC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHhHHHHHHHH
Q 048258 339 HRFEDAL--DCLSEMVE--WG-VPP---NTITYNILIRSLCAIGDVARSLRLFQKMQAD--RISPD---IYTFNALIQSF 405 (504)
Q Consensus 339 ~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 405 (504)
...+... .+.+.... .| +.. .......|...+...|++.+|..++..+... +.... ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222111 11111110 00 111 1112345666677777777777777776542 21111 23455556667
Q ss_pred HccCCHHHHHHHHHHHHh----CCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 406 CRMNKIEKAEKAFFSMLT----LGLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 406 ~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777777777766532 111111 12344555556666777777666666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.55 E-value=2.4 Score=41.10 Aligned_cols=126 Identities=13% Similarity=-0.007 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCcHHh--HHHHHHHHHhcC-ChhhHHHHHHHHHHc------CCCC-Ch--
Q 048258 49 NILIHGICRIGV-VDEALRLVKQMEGLGYAPNVYT--YTILIDGFCNAK-RVAEVFRVLEIMKER------NVCP-NE-- 115 (504)
Q Consensus 49 ~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g-~~~~a~~~~~~~~~~------~~~~-~~-- 115 (504)
..++..+...++ ++.|+.+|+++.+.. |...+ ...++..+...+ +--+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444555566 588999999998873 43332 223333333332 223445544444321 1111 11
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHh
Q 048258 116 --------ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMG 177 (504)
Q Consensus 116 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (504)
..+..-...+...|+++.|+++-++.....|. +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12233345567789999999999998887665 67889999999999999999998888874
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.31 E-value=1.1 Score=39.91 Aligned_cols=127 Identities=11% Similarity=-0.074 Sum_probs=81.8
Q ss_pred CChhhHHHHHHHH---HhcCCHHHHHHHHHHhhhC--CCC-CCHHhHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCcH
Q 048258 8 PSTRLYNAVIDAL---VKSNSIDLAYLKFQQMSVD--QCK-PDRFTYNILIHGICRIGVVD-EALRLVKQMEGLGYAPNV 80 (504)
Q Consensus 8 ~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~ 80 (504)
.|...|..++... ...|+.+.|...++.+... |.. ++.. ...|- ....-+++.. .
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~ 171 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------V 171 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------H
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------H
Confidence 3444455554433 2357888888888887764 211 1110 01121 1122222222 1
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCcchhHH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME-----REPLTQKLVC 153 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 153 (504)
.+...++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|++.|+++.. .|..|...+-
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 234556778889999999999999998774 45778999999999999999999999988765 3666655543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.07 E-value=1.8 Score=29.03 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
+.-+..+-++.+......|++....+.+++|.+.+++.-|.++|+-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344555555555555566666666666666666666666666665554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.46 E-value=2.6 Score=30.11 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 048258 410 KIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLIL 472 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 472 (504)
|.=+..+-++.+....+.|++.+....+.+|.+.+++..|+++++-...+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455566666666667777777777777777777777777777777654 233444565554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.33 E-value=8.2 Score=35.02 Aligned_cols=153 Identities=10% Similarity=0.040 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHhhhC-----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH----hc
Q 048258 23 SNSIDLAYLKFQQMSVD-----QCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC----NA 93 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 93 (504)
.|+++.|++.+-.+.+. +...+......++..|...|+++...+.+..+.+..-.. ...-..+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 47788888777555432 234456777888889999999998888777766543222 222233333322 22
Q ss_pred CChhh--HHHHHHHHHHc--C-CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCc---chhHHHHHHHHH
Q 048258 94 KRVAE--VFRVLEIMKER--N-VCP---NEATVRSLVHGVFRCLDPHKAFELLIRFMERE--PLT---QKLVCNTLLYRL 160 (504)
Q Consensus 94 g~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~ 160 (504)
...+. -..+.+..... | +.. .......|...+...|++.+|..++..+...- ... -...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 11111111110 1 001 11123456666777777777777777665321 110 122344445555
Q ss_pred hcCCChHHHHHHHHHH
Q 048258 161 SNNSMASEAAAILRKM 176 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~ 176 (504)
...+++..|..++.++
T Consensus 188 l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5566666666555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.96 E-value=11 Score=39.29 Aligned_cols=149 Identities=9% Similarity=0.024 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-------------
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL----G------------- 75 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~------------- 75 (504)
...++..+...+.++.+.++..... .++..--.+..++...|++++|.+.|++.... +
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 4457778888899988887655443 34444445677889999999999999875210 0
Q ss_pred -----CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 76 -----YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE----ATVRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 76 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
...-..-|..++..+.+.+.++.+.+.-....+.....+. ..|..+++.+...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 0112356888999999999999999888877765322222 257788999999999999999988776543
Q ss_pred CcchhHHHHHHHHHhcCCChHH
Q 048258 147 LTQKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~ 168 (504)
........++..++..|..+.
T Consensus 969 -~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHHHhCCChhh
Confidence 345566777777777666544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.72 E-value=7.1 Score=33.18 Aligned_cols=111 Identities=11% Similarity=0.019 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH----HHHHhhCCCCCChhhHHHHHH
Q 048258 118 VRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI----LRKMGDRGYLPESSTFDYTVT 193 (504)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 193 (504)
+.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ .+-..+.+..++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444445566666666665543221 13334444433332 333334455555555555555
Q ss_pred HHHccCChh-hHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhcCCcHHHHHHH
Q 048258 194 CLVTGLDLN-ETCGILDTFI----KRG--VKPRFSTYLLLMEALYKAGRDVEGDRYL 243 (504)
Q Consensus 194 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (504)
.+.....-+ .-.++++.++ +.| ...++.....+...+.+.+++.+|...|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 544422111 1122222222 121 1235666777777777777777766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.63 E-value=3.5 Score=29.53 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=31.8
Q ss_pred CccHHHHHHHHHHHHhcCCc---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 217 KPRFSTYLLLMEALYKAGRD---VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
.|+..+-..++.++.++... ..++.+++.+.+.++......+..+.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34444444444444444432 234444444444433223334444444555555555555555555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.59 E-value=11 Score=39.36 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHH--------------------
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMK-------------------- 107 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------------------- 107 (504)
...++..+...+.++-+.++...... ++..--.+..++...|++++|...|++..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 34567778888999988887665543 44444556788889999999999996541
Q ss_pred HcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcc----hhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC
Q 048258 108 ERN--VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQ----KLVCNTLLYRLSNNSMASEAAAILRKMGDRGY 181 (504)
Q Consensus 108 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (504)
... ...-..-|..++..+.+.+.++.+.+.-...++.....+ ...|..+...+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 111 112234577788899999999999988887766543222 23678888999999999999999988876543
Q ss_pred CCChhhHHHHHHHHHccCChhhHHH
Q 048258 182 LPESSTFDYTVTCLVTGLDLNETCG 206 (504)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (504)
-...+..++..++..+..+.-..
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhhC
Confidence 45677788888887777665443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.58 E-value=7.3 Score=33.10 Aligned_cols=112 Identities=9% Similarity=0.001 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHH----HHHHHhcCCCccHHHHHHHHH
Q 048258 153 CNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGI----LDTFIKRGVKPRFSTYLLLME 228 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 228 (504)
+.++..-|.+.+++++|.+++..-- ..+.+.|+...+.++ ++-..+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445566888899999998876532 224445565554443 444445577777777777776
Q ss_pred HHHhcCCcH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048258 229 ALYKAGRDV-EGDRYLNHVF----KDR--LVSNVNSYNMVIDCFCKVNMMDRATEICR 279 (504)
Q Consensus 229 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (504)
.+......+ .-..+.+.++ +.+ ..-++.....+...|.+.+++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 665533211 1222333332 121 23467777788888888888888777664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.01 E-value=1.4 Score=33.06 Aligned_cols=118 Identities=11% Similarity=0.000 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-------HhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCccc
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQAD-RISPDI-------YTFNALIQSFCRMNKIEKAEKAFFSMLTLG--LRPDNFS 432 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~ 432 (504)
+-.-+..+...|.++.|+-+...+... +..|+. .++..+.+++...|++..|...|+++++.. +..+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 333445556666777766666554332 112221 144555666667777777777777665321 1111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 433 YSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
...+. ....... .....++...-..+..+|.+.|++++|..+++.+..
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000 0000000 001223345555678888888888888888876543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.82 E-value=4.1 Score=29.11 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIR 368 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (504)
.-+..+-++.+...++.|++......+++|.+.+|+.-|.++|+-+..+ ..+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345555566666666677777777777777777777777777766654 2233444555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.22 E-value=2.3 Score=34.90 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH----hHHHHHHHHHh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVY----TYTILIDGFCN 92 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 92 (504)
+..+.+.|+++.|+.....-++.. |.|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|++-
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH--
Confidence 356778899999999988888776 668888888899999999999999988888776 34432 334444321
Q ss_pred cCChhhHHHHHHHHHHcCCCC-----ChhhHHHHHHHH--HhcCChHHHHHHHHHHHhcCC
Q 048258 93 AKRVAEVFRVLEIMKERNVCP-----NEATVRSLVHGV--FRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~ 146 (504)
..=.....-+-.| ...-...++.+. ...|+.++|.++-.++.+..+
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 1112222211111 112223333333 345888888888777766533
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.43 E-value=11 Score=32.26 Aligned_cols=84 Identities=7% Similarity=0.004 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHH
Q 048258 251 LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNS 330 (504)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (504)
..-++.....+...|.+.+++.+|...|- . |-.++...+..++.-+...+...+ ++...-..
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRa 193 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARA 193 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHH
Confidence 34477777888888888888888887762 1 223233555444444433332111 12222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048258 331 MIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
++ .|.-.++...|..+++...+
T Consensus 194 VL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HH-HHHHhCCHHHHHHHHHHHHH
Confidence 33 35566778888777665543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.18 E-value=12 Score=32.15 Aligned_cols=167 Identities=10% Similarity=0.017 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH----HHHhhCCCCCChhhHHHHH
Q 048258 117 TVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL----RKMGDRGYLPESSTFDYTV 192 (504)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 192 (504)
++.++..-|.+.+++++|.+++..-.. .+.+.|+...+-++- +-+.+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555567777888888776654221 233444444433332 3334445566666666666
Q ss_pred HHHHccCChh-hHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048258 193 TCLVTGLDLN-ETCGILDTFI----KRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCF 265 (504)
Q Consensus 193 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (504)
..+.....-+ .-..+++.++ +.| ..-|+.....+...|.+.+++.+|...|- . +..++...+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6655544321 1122222222 222 34467788888899999999888887762 2 2222334554444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 266 CKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
...+... .++...-..++ -|...++...|..+++...
T Consensus 178 ~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 3333211 11222333333 3455677777877666554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.07 E-value=8.1 Score=34.89 Aligned_cols=98 Identities=10% Similarity=-0.106 Sum_probs=67.1
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCcchh--HH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERN--VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER---EPLTQKL--VC 153 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~--~~ 153 (504)
.+...+...|.+.|++++|.+.|.++.... ...-...+..+++.+...+++..+...+.++... ++.+... ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 366778888889999999999999887653 2333456777888888899999988888876543 2222221 11
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 154 NTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
..-...+...+++..|...|.+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122335567888888888877654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.00 E-value=24 Score=33.55 Aligned_cols=138 Identities=7% Similarity=0.033 Sum_probs=71.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhh
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAE 98 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 98 (504)
...+.|++..+..+...+...-+.| -..|..+...+ ......+....+++-... +.....-..-+..+.+.+++..
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhCCCHHH
Confidence 3455688887777766654321111 11233332222 223455555555443321 2222233444555666667666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh
Q 048258 99 VFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (504)
.+..+.. .+.+...-.....+....|+..+|......+-..+.. ....+..++..+.+.|..
T Consensus 91 ~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 91 LLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 5554332 2335555556667777788877777777776655443 445555566655554443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.54 E-value=8.2 Score=34.85 Aligned_cols=120 Identities=12% Similarity=-0.034 Sum_probs=81.2
Q ss_pred ChhhHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCcchhHHHHHHHHHhcCCChHHHH
Q 048258 95 RVAEVFRVLEIMKERN-VCP-NEATVRSLVHGVFRCLDPHKAFELLIRFMER--EPLTQKLVCNTLLYRLSNNSMASEAA 170 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (504)
..++..+......+.. ... -..+...+...|.+.|+.+.|.+.|.++... +.......+-..+..+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3444445555554432 222 2346778999999999999999999998875 33445567888899999999999999
Q ss_pred HHHHHHhh---CCCCCChhh--HHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 171 AILRKMGD---RGYLPESST--FDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 171 ~~~~~~~~---~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
..+.++.. .+..|+... .......+...+++..|...|-+....
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 99988743 333333321 112223345678999998888777654
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.48 E-value=7.7 Score=30.22 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=53.3
Q ss_pred CCCCHHhHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 048258 391 ISPDIYTFNALIQSFCR--MNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPD 464 (504)
Q Consensus 391 ~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 464 (504)
...|.......+...-. .+...++.++|..|...|+.-. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34465544444432222 4557899999999998876554 44567788888889999999999999998877773
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.81 E-value=10 Score=27.53 Aligned_cols=66 Identities=9% Similarity=0.028 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 113 PNEATVRSLVHGVFRCLDP---HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
|+..+-..+..++++..+. .+++.+++.+...++........-+.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444444432 23444445444444433333333344445555555555555555444
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.42 E-value=9.8 Score=29.66 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=47.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 048258 373 IGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD 429 (504)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 429 (504)
.+....+.++|..|...++--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4557799999999988876544 45788888889999999999999999998876663
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=80.53 E-value=9.4 Score=28.20 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=39.8
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 048258 392 SPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP 463 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 463 (504)
..|.......+...-.. +++.++|..|...|+--. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 65 knD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp TTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34555555544433222 236666777776655443 3345566666666777777777777777665555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 504 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 10/228 (4%)
Query: 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELL 313
+++ + F + A + D PN + + K+A +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 314 VMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373
+ ++ + A+D +E P Y L +L
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEK 284
Query: 374 GDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-S 432
G VA + + + N L IE+A + + L + P+ +
Sbjct: 285 GSVAEAEDCYNTAL-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAA 341
Query: 433 YSALIKALIKSGRFDEAKQTFL-SMEQNGCNPDSYTSNLILETLVQQG 479
+S L L + G+ EA + ++ + D+Y SN+ TL +
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY-SNMGN-TLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 504 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.35 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.24 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.97 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.83 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.81 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.76 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.67 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.67 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.59 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.48 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.45 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.43 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.25 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.22 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.09 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.09 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.07 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.05 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.04 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.03 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.02 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.96 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.93 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.88 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.81 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.74 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.49 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.38 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.3 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.29 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.95 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.83 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.55 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.22 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.46 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.14 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.31 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.09 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 87.7 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 85.52 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2e-23 Score=188.49 Aligned_cols=383 Identities=11% Similarity=0.037 Sum_probs=232.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
+...+.+.|++++|++.|+++.+.. |.++.++..+...+.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4456677788888888888877664 4567777777777888888888888888777654 3456677777777777788
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+++|+..+....+... .+..............+....+............. ...............
T Consensus 83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------ 148 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKAL------------ 148 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTT------------
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccc------------
Confidence 8888887777776542 23333334444444444444444444333332222 122222222333333
Q ss_pred HhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCH
Q 048258 176 MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNV 255 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (504)
+....+...+....... +.+...+..+...+...|++++|...+..+....+. +.
T Consensus 149 -----------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 203 (388)
T d1w3ba_ 149 -----------------------GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FL 203 (388)
T ss_dssp -----------------------SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred -----------------------chhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cH
Confidence 44444444444433332 223445555555555666666666666665554433 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCL 335 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (504)
..+..+...+...|++++|+..++.....+. .+...+..+...+.+.|++++|...+++..+... .+...+..+..++
T Consensus 204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 5566666666666666666666666655432 2445555566666666666666666666665432 2455666666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 048258 336 CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAE 415 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 415 (504)
...|++++|+..++..... .+.+...+..+...+...|++++|+..++++.+.. +.+..++..+..+|...|++++|.
T Consensus 282 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777766665 24456666677777777777777777777776642 234556667777777777777777
Q ss_pred HHHHHHHhCCCCCC-cccHHHHHHHHHhcCC
Q 048258 416 KAFFSMLTLGLRPD-NFSYSALIKALIKSGR 445 (504)
Q Consensus 416 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 445 (504)
..|+++++. .|+ ...|..++.+|.+.||
T Consensus 360 ~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 360 MHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 777777764 343 4566677777766654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.4e-23 Score=187.99 Aligned_cols=381 Identities=14% Similarity=0.054 Sum_probs=282.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 048258 52 IHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDP 131 (504)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (504)
...+.+.|++++|++.++++.+.. +-+...+..+..+|.+.|++++|+..|+++.+.++ .+..++..+..++...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccc
Confidence 445556677777777777766553 33456666666666677777777777776666532 2445566666666666666
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTF 211 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (504)
++|.+.+.......+... .............+....+.......
T Consensus 84 ~~A~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFI------------------------------------DGYINLAAALVAAGDMEGAVQAYVSA 127 (388)
T ss_dssp HHHHHHHHHHHHHCTTCH------------------------------------HHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred cccccccccccccccccc------------------------------------cccccccccccccccccccccccccc
Confidence 666666666555443321 22222222222333333333333333
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 048258 212 IKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLV 291 (504)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 291 (504)
.... .................+....+...+.......+. +...+..+...+...|++++|...++...+..+. +..
T Consensus 128 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T d1w3ba_ 128 LQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp HHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred cccc-cccccccccccccccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHH
Confidence 3332 233344455556666777888888888887776654 6778888899999999999999999998876433 667
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC 371 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (504)
.+..+...+...|++++|...++....... .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 888999999999999999999999887643 467778888999999999999999999999864 446778999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHH
Q 048258 372 AIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 450 (504)
..|++++|.+.++...... +.+...+..+...+...|++++|...|+++++. .|+ ..++..+..++...|++++|+
T Consensus 283 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999988763 567788899999999999999999999999985 454 667888999999999999999
Q ss_pred HHHHHHHhcCCCC-ChhhHHHHHHHHHhcCC
Q 048258 451 QTFLSMEQNGCNP-DSYTSNLILETLVQQGR 480 (504)
Q Consensus 451 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 480 (504)
..|+++++. .| +..++..++.+|.+.||
T Consensus 360 ~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 360 MHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999999984 56 56789999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.1e-14 Score=125.06 Aligned_cols=244 Identities=10% Similarity=-0.044 Sum_probs=147.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
.....+.+.|++++|+..|+++.+.+ |.+..+|..+..++...|++++|+..|++..+.. +-+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 46677889999999999999998876 5678889999999999999999999999988764 446778888888899999
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHH
Q 048258 95 RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILR 174 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (504)
++++|.+.++.+.... |+............... ........+..+...+...++.+.|.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGA-------------------GLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhhc-------------------ccccchhhHHHHHHhhHHHHHHHHHH
Confidence 9999999999887753 22111000000000000 00000001111222333444555554
Q ss_pred HHhhCCC-CCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 048258 175 KMGDRGY-LPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVS 253 (504)
Q Consensus 175 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (504)
+...... .++...+..+...+...|++++|+..++...... +.+...+..++.++...|++++|.+.|+++++..+.
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 4433211 1233445555555556666666666666655543 334555556666666666666666666666655433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 254 NVNSYNMVIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
+..++..+..+|.+.|++++|++.|++..+
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666666666666666665543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.8e-14 Score=122.74 Aligned_cols=229 Identities=12% Similarity=0.107 Sum_probs=133.2
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
.....+.+.|++++|+..|+.+++.. +.+..++..++.++...|++++|...+.++.+..+. +...+..+..++...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 34555666777777777777777653 335667777777777777777777777777766544 5666777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCChhh---------------HHHHHHHHhcCCchHHHHHHHHHHHHCCC-CccHHHHHHHHH
Q 048258 270 MMDRATEICREMRDRDIAPNLVT---------------FNTLISGHCKDAEVHKTRELLVMLLECGF-KPDKFTFNSMID 333 (504)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 333 (504)
++++|.+.++........ .... ....+..+...+...++...+....+... ..+...+..+..
T Consensus 102 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp CHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred cccccccchhhHHHhccc-hHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 777777777776654211 0000 00011112223344555555555443221 223445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHH
Q 048258 334 CLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEK 413 (504)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (504)
.+...|++++|+..+++..... +.+...|..+..++...|++++|.+.++++.+.. +-+..++..+..+|...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665542 2345556666666666666666666666665532 2234455566666666666666
Q ss_pred HHHHHHHHHh
Q 048258 414 AEKAFFSMLT 423 (504)
Q Consensus 414 a~~~~~~~~~ 423 (504)
|.+.|+++++
T Consensus 259 A~~~~~~al~ 268 (323)
T d1fcha_ 259 AVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=5e-10 Score=98.43 Aligned_cols=271 Identities=11% Similarity=0.014 Sum_probs=156.1
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-----CHHHHH
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKPR----FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVS-----NVNSYN 259 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~ 259 (504)
......+...|++++|++++++..+.....+ ...+..+..++...|++++|...++.+....... ....+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3344556677888888888887776532111 2345566777777788888877777766432111 123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC---hhhHHHHHHHHhcCCchHHHHHHHHHHHHC----CCCccHHHH
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDR----DIAPN---LVTFNTLISGHCKDAEVHKTRELLVMLLEC----GFKPDKFTF 328 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 328 (504)
.+...+...|++..+...+...... ..... ...+..+...+...|+++.+...+...... +.......+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 5556667777777777777665432 11111 123444555666777777777777666532 122233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHhHH
Q 048258 329 NSMIDCLCRAHRFEDALDCLSEMVEWG--VPP----NTITYNILIRSLCAIGDVARSLRLFQKMQADRISP---DIYTFN 399 (504)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 399 (504)
......+...++...+...+.+..... ... ....+..+...+...|++++|...+++........ ....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 555556666777777777766554311 111 11234445556666777777777777665542211 123444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLT----LGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
.+..++...|++++|...++++.. .+..|+ ...+..+..+|...|++++|.+.+++..+.
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 566667777777777777776653 222222 334556666777777777777777777663
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.6e-10 Score=96.63 Aligned_cols=199 Identities=8% Similarity=0.025 Sum_probs=143.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG-VVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
...++.+...+.+.+.+++|+..++++.+.+ |-+..+|+....++...| ++++|+..++...+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3456666677788888999999999998876 667888888888887766 4899999999988765 446788888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCC---
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM--- 165 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 165 (504)
.+.+.|++++|+..++++.+... .+...|..+..++...|++++|++.++++++..|. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 88899999999999999988753 36778888888889999999999999998888776 55566665555544443
Q ss_pred ---hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 166 ---ASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 166 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
+++|++.+.+....... +...|..+...+. ....+++.+.++...+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHh
Confidence 45666666666554221 4444444444333 33345555555555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.5e-09 Score=92.67 Aligned_cols=195 Identities=13% Similarity=0.097 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL-DPHKAFELLIRFMEREPLTQKLVCNTLLYRL 160 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (504)
.|+.+...+.+.+.+++|++.++++.+.++ -+...|.....++...| ++++|+..+++++...|. +
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~----------- 111 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-N----------- 111 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-C-----------
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-h-----------
Confidence 344444444455555555555555555431 23334444444444433 245555555554444433 3
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHH
Q 048258 161 SNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (504)
..+|......+...|++++|++.++.+.+.. +.+..++..++..+...|++++|+
T Consensus 112 ------------------------~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 112 ------------------------YQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp ------------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred ------------------------hhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444444444444555554444432 334455555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHH
Q 048258 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNM------MDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLV 314 (504)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (504)
+.++.+++.++. +...|+.+...+.+.+. +++|++.+....+..+. +...|..+...+...+ .+++...++
T Consensus 167 ~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~ 243 (315)
T d2h6fa1 167 QYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHH
T ss_pred HHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHH
Confidence 555555554433 44445444444433332 45555555555554322 4444444444433322 344444444
Q ss_pred HHH
Q 048258 315 MLL 317 (504)
Q Consensus 315 ~~~ 317 (504)
...
T Consensus 244 ~~~ 246 (315)
T d2h6fa1 244 QLL 246 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=5e-10 Score=95.76 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQK 385 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 385 (504)
.+++..++++..+...+.+...+...+..+.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45666677766654444455566666666667777777777777776653222234566677777777777777777777
Q ss_pred HHhCCCCCCHHhHHHHHHH-HHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCC
Q 048258 386 MQADRISPDIYTFNALIQS-FCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNG-CNP 463 (504)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 463 (504)
+.+.. +.+...|...+.. +...|+.+.|..+|+.+++.. +.+...|..++..+...|++++|+.+|++..... .+|
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 76653 2233333333332 234567777777777777642 3345566677777777777777777777776542 222
Q ss_pred C--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 464 D--SYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 464 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+ ..+|...+..-...|+.+.+.++.+++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 235666666656667777777777776553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=7.9e-10 Score=94.50 Aligned_cols=187 Identities=9% Similarity=0.021 Sum_probs=110.3
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
.++|..+|++..+...+.+...+...+....+.|+.+.|..+|++++...+.....+|...+....+.|+.+.|.++|.+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45566666666654333344455566666666666666766666666655544444566666666666666666666666
Q ss_pred HhhCCCCCChhhHHHHHH-HHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-C
Q 048258 176 MGDRGYLPESSTFDYTVT-CLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-S 253 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 253 (504)
+...... +...+..... .+...|+.+.|..+++.+... .+.+...+...+..+.+.|+++.|..+|++.+...+. |
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 6554322 2223322222 223346666677777666665 2444566666666667777777777777776654321 1
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 254 --NVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 254 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
....|...+..-...|+.+.+.++++++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2345666666666677777777777766543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=1.9e-11 Score=106.31 Aligned_cols=264 Identities=12% Similarity=0.030 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHhCCCCCcHHhHHHHHHHH----------HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-
Q 048258 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGF----------CNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL- 129 (504)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 129 (504)
.++|+++++++.+.. |-+...|+..-..+ ...|++++|+..++...+.+ +.+...+..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 456666666665542 12233333322221 22334566666676666653 224445555555555444
Q ss_pred -ChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHH
Q 048258 130 -DPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGIL 208 (504)
Q Consensus 130 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (504)
++++|...+.+.....+......+......+...+..++|+..++.+...... +...|..+...+...|++++|...+
T Consensus 123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35666667776666655432222333445555667777777777766665432 5566666677777777766665544
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048258 209 DTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAP 288 (504)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (504)
...... .|+ .......+...+..+++...+.......+. +...+..+...+...++.++|...+.+.....+.
T Consensus 202 ~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~- 274 (334)
T d1dcea1 202 RLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKW- 274 (334)
T ss_dssp SSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-
T ss_pred HHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-
Confidence 433332 111 122333445566667777777777666543 4444555566667777888888888777765422
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHH
Q 048258 289 NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD-KFTFNSMIDCLC 336 (504)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 336 (504)
+..++..+...+...|+.++|.+.++.+.+.. |+ ..-|..+...+.
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence 55667777778888888888888888887753 43 344555544444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.7e-09 Score=93.60 Aligned_cols=234 Identities=12% Similarity=-0.035 Sum_probs=124.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-cHHhH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD----RFTYNILIHGICRIGVVDEALRLVKQMEGLG----YAP-NVYTY 83 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~ 83 (504)
.......+...|++++|+..+++..+.....+ ..++..+...+...|++++|+..|++..+.. ..+ ....+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33445667788888888888888776531111 2356667778888888888888888775421 111 12345
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc----CCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc----chhH
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKER----NVCPN---EATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT----QKLV 152 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 152 (504)
..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+.......+.. ....
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 55566677778888888877766542 11111 1234455666777777777777777766543321 1223
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhC----CCCC--ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCC---ccHHHH
Q 048258 153 CNTLLYRLSNNSMASEAAAILRKMGDR----GYLP--ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVK---PRFSTY 223 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~ 223 (504)
+......+...+....+...+.+.... +..+ ....+......+...|+++.|...++........ .....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 333444555566666666555544221 0000 0112233334444455555555555444332111 112223
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHH
Q 048258 224 LLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
..+..++...|++++|...++.+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~a 277 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEEL 277 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444445555554444444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.24 E-value=2e-10 Score=99.76 Aligned_cols=263 Identities=9% Similarity=-0.043 Sum_probs=148.9
Q ss_pred ChhhHHHHHHHHHHcCCCCCh-hhHHHHHHH----------HHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 95 RVAEVFRVLEIMKERNVCPNE-ATVRSLVHG----------VFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
..++|+.+++++.+.+ |+. ..|+..-.. +...|++++|+..++.+....|. +...|..+..++...
T Consensus 44 ~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (334)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHh
Confidence 3467777777777653 333 233222211 22334466777777777776654 444555554444443
Q ss_pred C--ChHHHHHHHHHHhhCCCCCChhhH-HHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHH
Q 048258 164 S--MASEAAAILRKMGDRGYLPESSTF-DYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD 240 (504)
Q Consensus 164 ~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (504)
+ +.++|...+.++...... +...+ ......+...+.+++|+..++.+.... +-+...+..+...+...|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 3 467777777776654222 33333 334455666677777777777776664 345666777777777777777665
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC
Q 048258 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG 320 (504)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 320 (504)
..+....+.. +. .......+...+..+++...+........ ++...+..+...+...++..+|...+....+..
T Consensus 199 ~~~~~~~~~~----~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENVL----LK-ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHHH----HH-HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHhH----HH-HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 5444333221 11 11122334445556666666666655532 244455555556666677777777777666543
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHH
Q 048258 321 FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPP-NTITYNILIRSLC 371 (504)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 371 (504)
+.+...+..+..++...|++++|+..++.+.+. .| +...|..+...+.
T Consensus 273 -p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 273 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp -HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 224455666667777777777777777777765 33 3334554544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=4e-10 Score=93.96 Aligned_cols=152 Identities=8% Similarity=-0.025 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHhhhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHH
Q 048258 24 NSIDLAYLKFQQMSVDQCKP---DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVF 100 (504)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 100 (504)
.+.+.++.-+++........ ...+|..+...|.+.|++++|+..|++..+.. +-++.+|..+..++.+.|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence 34566667777776543111 23466677888999999999999999998875 457888999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 101 RVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
..|+++.+... .+..++..+..++...|++++|.+.|++..+..|. +......+...+.+.+..+.+..+......
T Consensus 92 ~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 92 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 99999988743 35567888888999999999999999998887765 333333333444455555555444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=8.6e-10 Score=91.85 Aligned_cols=130 Identities=8% Similarity=-0.101 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (504)
.++..++.+|.+.|++++|...|+++++..+. ++.+|+.+..++.+.|++++|+..|++..+..+. +..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence 45666677777777777777777777776654 6777777777777777777787777777766432 455666777777
Q ss_pred hcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
...|++++|...++...+... .+......+..++.+.+..+.+..+......
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 777777777777777766532 2333333333334444444444444444444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=4.8e-08 Score=76.19 Aligned_cols=131 Identities=10% Similarity=-0.097 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
.|+. ...+...|+++.|++.|+.+. +|++.+|..+..+|...|++++|++.|++..+.+ +.+...|..+..++.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 4553 667788999999999998764 5778888889999999999999999999998876 557888999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCC--------------CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 048258 92 NAKRVAEVFRVLEIMKERNVC--------------PN-EATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT 148 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~--------------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (504)
+.|++++|++.|++....... ++ ..++..+..++.+.|++++|.+.+.......+.+
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999988753110 00 1344556667777888888888777777665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2.5e-07 Score=72.00 Aligned_cols=128 Identities=10% Similarity=-0.083 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF 126 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (504)
.|+. ...+...|+++.|++.|+++. +|++.+|..+..+|...|++++|++.|++..+.+. .+...|..+..++.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHH
Confidence 3444 456678899999999998753 56788899999999999999999999999998853 46678888999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCcc---------------hhHHHHHHHHHhcCCChHHHHHHHHHHhhCC
Q 048258 127 RCLDPHKAFELLIRFMEREPLTQ---------------KLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (504)
+.|++++|.+.|++.+...+... ..++..+..++.+.|++++|.+.+.......
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999998875422111 1233445555666666666666666665543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.81 E-value=1.1e-05 Score=66.47 Aligned_cols=223 Identities=11% Similarity=0.029 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 048258 220 FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK----VNMMDRATEICREMRDRDIAPNLVTFNT 295 (504)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (504)
+..+..+...+...+++.+|+++|++..+.+ +...+..+...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3444555555555666666666666665544 34444444444443 345666666666655544 2222223
Q ss_pred HHHHHh----cCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 048258 296 LISGHC----KDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLC----RAHRFEDALDCLSEMVEWGVPPNTITYNILI 367 (504)
Q Consensus 296 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (504)
+...+. ...+.+.|...+....+.|.. .....+...+. .......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 322222 234556666666666655422 11222222222 233455566666655553 2445555566
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 048258 368 RSLCA----IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKA 439 (504)
Q Consensus 368 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (504)
..+.. ..+...+...++...+.+ +......+...|.. ..++++|..+|++..+.| ++..+..|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 66554 345666666666666543 44444455544543 456777777777777765 34455556666
Q ss_pred HHh----cCChhHHHHHHHHHHhcC
Q 048258 440 LIK----SGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 440 ~~~----~g~~~~a~~~~~~~~~~~ 460 (504)
|.+ ..+.++|.++|++..+.|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 554 336777777777777765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.80 E-value=1.4e-05 Score=65.73 Aligned_cols=225 Identities=11% Similarity=-0.028 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCchHHHHHHHHHHHHCCCCccHHHHH
Q 048258 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK----DAEVHKTRELLVMLLECGFKPDKFTFN 329 (504)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (504)
|+..+..+...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...+...+......+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45566777778888999999999999998876 56667677777765 568899999999988765 333344
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048258 330 SMIDCLC----RAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC----AIGDVARSLRLFQKMQADRISPDIYTFNAL 401 (504)
Q Consensus 330 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (504)
.+...+. ...+.+.|...++...+.|.. .....+...+. .......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 4444443 256788999999998887532 23333333333 244677788888877764 356667777
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048258 402 IQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQNGCNPDSYTSNLILE 473 (504)
Q Consensus 402 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 473 (504)
...+.. ..+...+..+++...+.| +......+...+.. ..++++|+.+|++..+.| ++..+..|+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 777764 457888999999888865 55666667666665 568999999999999876 4667778888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCC
Q 048258 474 TLVQ----QGRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 474 ~~~~----~g~~~~a~~~~~~~~~~~~ 496 (504)
.|.+ ..+.++|.++|+++.+.|.
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8876 4489999999999988774
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.7e-07 Score=66.15 Aligned_cols=93 Identities=13% Similarity=-0.010 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
.-...+.+.|++++|+..|+++.+.. |.+...|..+..++...|++++|+..++...+.+ +.+...|..+..++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 34556666777777777777766655 5566667777777777777777777777776654 446666666777777777
Q ss_pred ChhhHHHHHHHHHHc
Q 048258 95 RVAEVFRVLEIMKER 109 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~ 109 (504)
++++|+..|++..+.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777777655
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=2.6e-07 Score=77.66 Aligned_cols=169 Identities=9% Similarity=0.027 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-CChhhHHHHHHHHhcCCchHHHHHHHHHHHHC----CC-CccH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRD----IA-PNLVTFNTLISGHCKDAEVHKTRELLVMLLEC----GF-KPDK 325 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 325 (504)
..|......|...+++++|.+.|.+..+.. -+ .-..+|..+..+|.+.|++++|.+.++...+. +. ....
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 346666666777777777777776665421 11 11245566666666667777776666654431 11 0112
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----
Q 048258 326 FTFNSMIDCLCR-AHRFEDALDCLSEMVEW----GVPP-NTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDI---- 395 (504)
Q Consensus 326 ~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 395 (504)
.++..+...|.. .|++++|+..+++..+. +.++ ...++..+...+...|++++|...++++.........
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 334444444433 46666666666665431 1111 1223555666666666666666666666554211110
Q ss_pred --HhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 048258 396 --YTFNALIQSFCRMNKIEKAEKAFFSMLTL 424 (504)
Q Consensus 396 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 424 (504)
..+...+.++...|+++.|.+.++++.+.
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11223333445566666666666666553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=1.3e-07 Score=74.71 Aligned_cols=101 Identities=13% Similarity=0.002 Sum_probs=78.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+|++..+......+.+.|+++.|+..|+++.+.+ |.++.+|..+..+|.+.|++++|+..|++..+.. +-+..+|..+
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 4677777777888888888888888888877765 6677778888888888888888888888887764 3356777778
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
..+|...|++++|+..|+++.+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888888888888888877653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=6.1e-07 Score=63.25 Aligned_cols=96 Identities=9% Similarity=-0.062 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 048258 50 ILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL 129 (504)
Q Consensus 50 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (504)
.-...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++...+.+ +.++..|..+..++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 34666778888888888888888764 5577788888888888888888888888888775 346777888888888888
Q ss_pred ChHHHHHHHHHHHhcCCC
Q 048258 130 DPHKAFELLIRFMEREPL 147 (504)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~ 147 (504)
++++|+..|++..+..|.
T Consensus 86 ~~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp CHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 888888888888877665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=4.6e-07 Score=68.19 Aligned_cols=96 Identities=11% Similarity=0.015 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+......+.+.|+++.|+..|+++.+.+ +.+...|..+..+|...|++++|+..|++..+.. +.+..+|..+..++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 3344556677777777777777777665 5567777777777777777777777777776654 3456677777777777
Q ss_pred cCChhhHHHHHHHHHHcC
Q 048258 93 AKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~ 110 (504)
.|++++|...+++.....
T Consensus 91 ~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK 108 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 777777777777777653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=6.7e-07 Score=75.09 Aligned_cols=197 Identities=12% Similarity=-0.030 Sum_probs=124.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHH
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDR-----LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDI-----APNLVTFNT 295 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ 295 (504)
.+..|...+++++|.+.|.++.... ......+|..+..+|.+.|++++|++.++...+... .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 4556777777788777777766421 111234677778888888888888888877654311 111344555
Q ss_pred HHHHHh-cCCchHHHHHHHHHHHH----CCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhH
Q 048258 296 LISGHC-KDAEVHKTRELLVMLLE----CGFKP-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT------ITY 363 (504)
Q Consensus 296 l~~~~~-~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 363 (504)
+...|. ..|++++|.+.+....+ .+.++ ...++..+...+...|++++|+..|+++......... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 46889999988887653 22111 1345777888999999999999999998875322111 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHhHHHHHHHHHc--cCCHHHHHHHHHHHH
Q 048258 364 NILIRSLCAIGDVARSLRLFQKMQADRIS-PD---IYTFNALIQSFCR--MNKIEKAEKAFFSML 422 (504)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~a~~~~~~~~ 422 (504)
...+.++...|+++.|...+++..+.... ++ ......++.++.. .+.+++|...|+++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 44555677889999999999998875311 11 2234555555543 234667766665443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.59 E-value=2.3e-07 Score=64.84 Aligned_cols=89 Identities=11% Similarity=0.033 Sum_probs=51.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
....+.+.|++++|+..|+++.+.+ |.++.+|..+..++.+.|++++|+..|++..+.. +.+..+|..+..+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 4455555666666666666655554 3355556666666666666666666666655543 3345555555556666666
Q ss_pred hhhHHHHHHHH
Q 048258 96 VAEVFRVLEIM 106 (504)
Q Consensus 96 ~~~a~~~~~~~ 106 (504)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=3.5e-07 Score=72.20 Aligned_cols=99 Identities=11% Similarity=0.022 Sum_probs=85.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHH
Q 048258 358 PNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSAL 436 (504)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l 436 (504)
|+...+...+..+.+.|++++|+..|+++.+.. +.+...|..+..+|.+.|++++|...|+++++. .|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 677778888999999999999999999988864 556778999999999999999999999999885 454 6678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 048258 437 IKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+.+|...|++++|...|+++.+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.2e-06 Score=65.80 Aligned_cols=98 Identities=8% Similarity=-0.050 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
+......|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++.+.+ +.+..++..++.++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 3445667889999999999999998875 5578889999999999999999999999998875 3356788889999999
Q ss_pred cCChHHHHHHHHHHHhcCCC
Q 048258 128 CLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~ 147 (504)
.|++++|...+++.....|.
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999887765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=8.3e-07 Score=62.68 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCc-HHhHHHHHHH
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV---VDEALRLVKQMEGLGYAPN-VYTYTILIDG 89 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 89 (504)
..++..+...++++.|.+.|++..+.+ +.++.++..+..++.+.++ +++|+.+|+++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456677777888888888888887766 6677777777777766444 4468888888776543333 2356677777
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 048258 90 FCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~ 109 (504)
|.+.|++++|++.|+++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 78888888888888888776
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.9e-07 Score=65.14 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC-cccHHHHHHH
Q 048258 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNK---IEKAEKAFFSMLTLGLRPD-NFSYSALIKA 439 (504)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 439 (504)
..++..+...+++++|++.|++....+ +.+..++..+..++.+.++ +++|..+++++...+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356667777777888888888777753 4456677777777765443 4457777777776532222 2356667777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCChh
Q 048258 440 LIKSGRFDEAKQTFLSMEQNGCNPDSY 466 (504)
Q Consensus 440 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ 466 (504)
|.+.|++++|++.|+++++. .|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 77788888888888877773 45443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.45 E-value=6.5e-07 Score=62.49 Aligned_cols=90 Identities=9% Similarity=-0.028 Sum_probs=58.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
.+...+.+.|++++|...|+++++.. +-+...|..+..++.+.|++++|+..+++.++.. +.+...+..++.+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 34455666777777777777776642 2235566666777777777777777777776642 234566667777777777
Q ss_pred CHHHHHHHHHHH
Q 048258 480 RFEEAHDIVKTS 491 (504)
Q Consensus 480 ~~~~a~~~~~~~ 491 (504)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777777777664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.43 E-value=0.00031 Score=58.73 Aligned_cols=146 Identities=13% Similarity=0.082 Sum_probs=87.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
.||..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 35555566677888888999999888886552 5667778888888888888776542 56678888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (504)
...+.+..+..-+ .+.......++.....++..|-..|.+++...+++...... ......++.++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 8888776654332 22223333456666778888888888888888888776543 335567777888777754 3
Q ss_pred HHHHHHHH
Q 048258 167 SEAAAILR 174 (504)
Q Consensus 167 ~~a~~~~~ 174 (504)
++..+.+.
T Consensus 149 ~kl~e~l~ 156 (336)
T d1b89a_ 149 QKMREHLE 156 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34344433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=8.6e-06 Score=58.19 Aligned_cols=97 Identities=7% Similarity=0.054 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc-----HHhHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYA-PN-----VYTYTI 85 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-----~~~~~~ 85 (504)
-+..+...+.+.|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|++.++++.+.... +. ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34456677777888888888888877765 556777777788888888888888888777653200 00 234555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc
Q 048258 86 LIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 86 l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
+...+...+++++|++.|+.....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666666677777777777776654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.6e-05 Score=60.09 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFC 406 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (504)
.+......+.+.|++++|+..|++.++.... +... ...-......+ ...+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~-~~~~-------------~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEY-ESSF-------------SNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CCCC-------------CSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh-cccc-------------chHHHhhhchh-------HHHHHHHHHHHHH
Confidence 3444555677777777777777777653111 0000 00000000000 1234666777888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcC
Q 048258 407 RMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-DSYTSNLILETLVQQG 479 (504)
Q Consensus 407 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 479 (504)
+.|++++|+..+++.++.. +.+...+..++.+|...|++++|+..|+++.+. .| +..+...+..+..+.+
T Consensus 74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 8888888888888888753 235667788888888888888888888888874 44 4455555554444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.2e-05 Score=59.33 Aligned_cols=97 Identities=7% Similarity=-0.051 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC-------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCK-PD-------------RFTYNILIHGICRIGVVDEALRLVKQMEGLGYA 77 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 77 (504)
.+......+.+.|+++.|+..|++..+.... +. ..+|+.+..+|.+.|++++|+..++...... +
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 93 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-c
Confidence 3444556778888888888888877643200 00 1223334444555555555555555555443 2
Q ss_pred CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 78 PNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.++.+|..+..+|...|++++|+..|+...+.
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 24445555555555555555555555555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.22 E-value=0.00097 Score=55.64 Aligned_cols=48 Identities=6% Similarity=0.079 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEK 416 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 416 (504)
++..+.+.+++......++.....+ +....+++...|...++++.-.+
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHH
Confidence 3444445555555666666655543 34577778888888887655443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=7.5e-06 Score=58.52 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc-------ccHHHHH
Q 048258 365 ILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN-------FSYSALI 437 (504)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~ 437 (504)
.+...+...|++++|+..|++.++.+ +.+...+..+..+|...|++++|...++++++.. +.+. .+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHH
Confidence 34555555566666666666555542 2344555555566666666666666665555421 0011 2334444
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 048258 438 KALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~~~~ 458 (504)
..+...+++++|+..|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555555666666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.1e-06 Score=79.84 Aligned_cols=228 Identities=9% Similarity=-0.038 Sum_probs=126.8
Q ss_pred hHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 203 ETCGILDTFIKRGVKPR-FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 203 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
+|.+.+++..+. +|+ ...+..+..++...+++++| |++++..++. ....++.....+ ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~Lw--~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQDLW--NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHHHH--HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHHHH--HHHHHHHHHHHHHh
Confidence 677888888774 333 45667777778888877765 6666654322 111111111111 11245677777777
Q ss_pred HhCCCCCChhhHHHHHHH--HhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048258 282 RDRDIAPNLVTFNTLISG--HCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359 (504)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (504)
.+....++..-....... ....+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+....... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 665433443333222222 223344555555444433322 2345566777778888999999998888776532 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 048258 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKA 439 (504)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (504)
..++..+...+...|++++|...|+++.+.. +.+...|+.+...+...|+..+|...|.+.+... +|-..++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3567788999999999999999999998863 4456799999999999999999999999999864 4566777777776
Q ss_pred HHhcC
Q 048258 440 LIKSG 444 (504)
Q Consensus 440 ~~~~g 444 (504)
+.+..
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 65543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.3e-06 Score=79.43 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=127.6
Q ss_pred HHHHHHHHHhhCCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 168 EAAAILRKMGDRGYLPE-SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
+|.+.|++.... .|+ ...+..+..++...+++++| +++++.. .|+..........+. ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHh
Confidence 678888888763 333 34556666777777777765 6666654 232211111111111 12245667777777
Q ss_pred HhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc
Q 048258 247 FKDRLVSNVNSYNMVIDC--FCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD 324 (504)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (504)
.+....++.......... ....+.++.++..+....... +++...+..+...+.+.|+.+.|...+....... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 655444343322222222 223445566655555443332 2356677788888889999999998887765431 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 048258 325 KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQS 404 (504)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (504)
..++..+...+...+++++|+..|++..+.. |.+...|+.+...+...|+..+|...|.+..... +|-..++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3567778888999999999999999999874 4577899999999999999999999999999874 5677788888777
Q ss_pred HHcc
Q 048258 405 FCRM 408 (504)
Q Consensus 405 ~~~~ 408 (504)
+.+.
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.09 E-value=4.2e-06 Score=68.10 Aligned_cols=128 Identities=12% Similarity=-0.044 Sum_probs=85.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChh
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVA 97 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 97 (504)
+-..+.|++++|+..+++.++.. |.+...+..+...++..|++++|+..++...+.. +-+...+..+...+...+..+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccH
Confidence 34667899999999999999887 7788999999999999999999999999998863 223445554544443333333
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 98 EVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
++..-.......+.+++...+......+...|+.++|.+.++++.+..|.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 22221111111111112223344456677889999999999888876554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.09 E-value=8.7e-05 Score=54.71 Aligned_cols=110 Identities=13% Similarity=0.014 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQC----KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+..-...+.+.|++..|+..|.++...-. .++..... ... .....+|+.+..
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~Nla~ 75 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD--------------------KKK----NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH--------------------HHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH--------------------hhh----hHHHHHHhhHHH
Confidence 44455667778888888888877664310 01111000 000 001224455555
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+|.+.|++++|++.++.+.+.+ +.+..++..+..++...|++++|...|++..+..|.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5666666666666666665553 234455566666666666666666666666655544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.07 E-value=6.4e-05 Score=55.46 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 048258 396 YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS 465 (504)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 465 (504)
.++..+..+|.+.|++++|++.++++++.. +.+..+|..++.++...|++++|+..|++..+. .|+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n 134 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNN 134 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTC
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 356677788888888888888888888763 335677888888888888888888888888874 4543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=4.6e-05 Score=57.50 Aligned_cols=67 Identities=10% Similarity=-0.095 Sum_probs=37.1
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 80 VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 80 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
...|..+..++.+.|++++|+..++++.+.. +.+...+..+..++...|++++|.+.|++.++..|.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3344555555555666666666666655543 224445555555666666666666666665555444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=3.6e-05 Score=58.13 Aligned_cols=81 Identities=10% Similarity=0.088 Sum_probs=60.2
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHH
Q 048258 394 DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-DSYTSNLIL 472 (504)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 472 (504)
....+..+..++.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..|+++.+. .| +..+...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34466777888888999999999999988863 334667888888899999999999999988885 44 445555555
Q ss_pred HHHHh
Q 048258 473 ETLVQ 477 (504)
Q Consensus 473 ~~~~~ 477 (504)
.+..+
T Consensus 153 ~~~~~ 157 (169)
T d1ihga1 153 KVKQK 157 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.03 E-value=4.1e-05 Score=57.63 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=60.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-DSYTSNLILETL 475 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 475 (504)
+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|+++.+. .| +..+...+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 45566777788888888888888888753 345667777778888888888888888888774 44 444445544444
Q ss_pred HhcCCH-HHHHHHHHHHH
Q 048258 476 VQQGRF-EEAHDIVKTSK 492 (504)
Q Consensus 476 ~~~g~~-~~a~~~~~~~~ 492 (504)
...+.. +...+.+..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 443333 23444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.02 E-value=0.0001 Score=55.72 Aligned_cols=102 Identities=9% Similarity=0.024 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCC--CC-CC------------------HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQ--CK-PD------------------RFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
..........|++++|...|.+..... .. ++ ...+..+...+...|++++|+..++++.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al 94 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 94 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 344567888999999999999988752 10 11 0234445555666666666666666666
Q ss_pred hCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChh
Q 048258 73 GLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE-----RNVCPNEA 116 (504)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 116 (504)
+.. +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...
T Consensus 95 ~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 95 FEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 553 34555666666666666666666666666532 35555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.96 E-value=7.9e-05 Score=56.01 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCH-----------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVD---QCKPDR-----------FTYNILIHGICRIGVVDEALRLVKQMEGLGY 76 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 76 (504)
..+......+.+.|++..|+..|...... ....+. .+|+.+..+|.+.|++++|+..++...+..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~- 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence 34556677888899999999998876642 111111 122334444455555555555555555443
Q ss_pred CCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 77 APNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
+.+..+|..+..++...|++++|+..|+++.+.
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455555555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=4e-05 Score=55.90 Aligned_cols=88 Identities=3% Similarity=-0.078 Sum_probs=64.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRI----------GVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
|-+.+.+++|+..|+...+.+ |.+..++..+..++... +.+++|+..|++..+.. +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 455677899999999998887 77888888888887654 44577888888888765 4467788888877
Q ss_pred HHhcCC-----------hhhHHHHHHHHHHc
Q 048258 90 FCNAKR-----------VAEVFRVLEIMKER 109 (504)
Q Consensus 90 ~~~~g~-----------~~~a~~~~~~~~~~ 109 (504)
|...|+ +++|.+.|++..+.
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 766543 45566666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.88 E-value=0.00032 Score=52.97 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=72.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 048258 51 LIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLD 130 (504)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (504)
........|++++|.+.|.+....- +... +........+...-..+... ....+..++..+...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3456677788888888888877641 1110 00111111122222222211 23455667777777888
Q ss_pred hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh-----CCCCCChh
Q 048258 131 PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD-----RGYLPESS 186 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 186 (504)
+++|+..+++++...|. +...|..++.++...|+..+|++.|+++.. .|+.|+..
T Consensus 83 ~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred chHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 88888888887777665 667777777778888888888777777632 35555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.81 E-value=4e-05 Score=55.90 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=61.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 048258 336 CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAE 415 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 415 (504)
.+.+.+++|+..|+...+.. |.+..++..+..++...+++..+.+ ..+.+++|.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai 61 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHH
Confidence 34455666666666666653 3455556556655553322211100 112234444
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcC-----------ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 048258 416 KAFFSMLTLGLRPDNFSYSALIKALIKSG-----------RFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEA 484 (504)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 484 (504)
..|+++++.. +.+..+|..+..+|...| .+++|.+.|+++.+ +.|+...+..-+..+ ..|
T Consensus 62 ~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka 132 (145)
T d1zu2a1 62 TKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKA 132 (145)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTH
T ss_pred HHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHH
Confidence 4444444431 112334444444443332 35677777877777 356655554433333 455
Q ss_pred HHHHHHHHHcC
Q 048258 485 HDIVKTSKERG 495 (504)
Q Consensus 485 ~~~~~~~~~~~ 495 (504)
.+++.++.+.|
T Consensus 133 ~~~~~e~~k~~ 143 (145)
T d1zu2a1 133 PQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHHh
Confidence 56666665554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.74 E-value=3.1e-05 Score=62.85 Aligned_cols=122 Identities=11% Similarity=-0.027 Sum_probs=62.7
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHH
Q 048258 231 YKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTR 310 (504)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (504)
.+.|++++|+..+++.++..|. +...+..+...++..|++++|...++...+..+. +...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 3456677777777777766655 6667777777777777777777777776665321 2233333333332222222211
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048258 311 ELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW 354 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (504)
.-.......+.+++...+......+...|+.++|...++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11000000111222233333444556667777777777766654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.49 E-value=0.00092 Score=49.20 Aligned_cols=62 Identities=26% Similarity=0.090 Sum_probs=33.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQN-----GCNPD-----SYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+|+.+..+|...|++++|...+++.+.. ...++ ...+..++.+|...|++++|.+.|+++.+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666665555431 01111 11345556666666677766666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.38 E-value=0.0015 Score=48.03 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC-CCC----------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCc-
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQC-KPD----------RFTYNILIHGICRIGVVDEALRLVKQMEGL-----GYAPN- 79 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~- 79 (504)
...+.+.|++++|++.|++..+... .|+ ...|+.+..+|...|++++|+..+++.... ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 4455566667777766666654210 011 234555555666666666666555554421 00111
Q ss_pred ----HHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048258 80 ----VYTYTILIDGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 80 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (504)
...++.+..+|...|++++|+..|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1123444455555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.30 E-value=0.0043 Score=43.89 Aligned_cols=81 Identities=10% Similarity=-0.068 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCC
Q 048258 409 NKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQ----QGR 480 (504)
Q Consensus 409 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 480 (504)
.+.++|.+++++..+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34455555555555443 22333333333332 234555666666655543 23334444444444 345
Q ss_pred HHHHHHHHHHHHHcC
Q 048258 481 FEEAHDIVKTSKERG 495 (504)
Q Consensus 481 ~~~a~~~~~~~~~~~ 495 (504)
.++|.++++++.+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666655554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00066 Score=44.86 Aligned_cols=63 Identities=16% Similarity=0.032 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQ-----CKP-DRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
.+-.+...+.+.|+++.|+..|++..+.. ..+ ...+++.+..++.+.|++++|+..++++.+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 33455566666666666666666554321 011 1344555556666666666666666665554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0016 Score=42.85 Aligned_cols=64 Identities=8% Similarity=0.134 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRL-----VS-NVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
..+..++..+.+.|++.+|...|+++++..+ .+ ...+++.+..++.+.|++++|+..++++.+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3344555555666666666666555543211 11 1344555666666666666666666666555
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.90 E-value=0.03 Score=39.31 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHHh
Q 048258 446 FDEAKQTFLSMEQ 458 (504)
Q Consensus 446 ~~~a~~~~~~~~~ 458 (504)
.++|.+++++..+
T Consensus 111 ~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 111 EKQAVKTFEKACR 123 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.95 E-value=0.12 Score=34.66 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 431 FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
..++..++.+..+|+-++-.++++.+.+.+ +|++.....++.+|.+.|...++-+++.++=++|
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 334444555555555555555555544432 4555555555555555555555555555555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.51 Score=41.02 Aligned_cols=415 Identities=6% Similarity=-0.018 Sum_probs=221.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHG--ICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
..+....+.|+...+.++...+... | ...|-..-.. -.......+...++++-... +.....-...+..+.+
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHh
Confidence 3455677788888888887777532 2 2223322211 12234555555544443221 1112222334555667
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
.++++..+..+. ..+.+...-...+.+....|+.+.|.+.+..+-..+.. .+..+. .+
T Consensus 85 ~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~----------------~l 142 (450)
T d1qsaa1 85 REDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACD----------------KL 142 (450)
T ss_dssp TTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHH----------------HH
T ss_pred ccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHH----------------HH
Confidence 777665443331 12345555556777778888888888877776655433 222223 33
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 048258 173 LRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFS-TYLLLMEALYKAGRDVEGDRYLNHVFKDRL 251 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (504)
|..+...|. .+...+-.-+......|+...|..+...+ +++.. .....+.... +...+.... ...
T Consensus 143 ~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~---~p~~~~~~~---~~~-- 208 (450)
T d1qsaa1 143 FSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFA---RTT-- 208 (450)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHH---HHS--
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHh---ChHhHHHHH---hcC--
Confidence 333333322 23444444455555667777776665432 22222 2222222221 122222211 111
Q ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHH----HHHHHhcCCchHHHHHHHHHHHHCCCCccH
Q 048258 252 VSNVNSYNMVIDCFCK--VNMMDRATEICREMRDRDIAPNLVTFNT----LISGHCKDAEVHKTRELLVMLLECGFKPDK 325 (504)
Q Consensus 252 ~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (504)
..+......+..++.+ ..+.+.+..++......... +...+.. +.......+..+.+...+......+. +.
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~ 285 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--ST 285 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--ch
Confidence 1122222222222222 35788888888887665322 2222222 22233445667788888877766543 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 048258 326 FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSF 405 (504)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (504)
....-.+......+++..+...+..+... ........--+..++...|+.+.|...|..+... ++ -|..|..
T Consensus 286 ~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa-- 357 (450)
T d1qsaa1 286 SLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA-- 357 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHH--
Confidence 44444555566778999999998877543 1223344456778899999999999999998742 33 2333322
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC-ccc-----HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 406 CRMNKIEKAEKAFFSMLTLGLRPD-NFS-----YSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 406 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
.+.|..-. +....+..+ ... -...+..+...|....|...|..+... .+......++....+.|
T Consensus 358 ~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g 427 (450)
T d1qsaa1 358 QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQ 427 (450)
T ss_dssp HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCC
Confidence 22332100 000000111 111 112345677899999999999988764 24556667788888999
Q ss_pred CHHHHHHHHHHHH
Q 048258 480 RFEEAHDIVKTSK 492 (504)
Q Consensus 480 ~~~~a~~~~~~~~ 492 (504)
.++.|+....+..
T Consensus 428 ~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 428 WWDLSVQATIAGK 440 (450)
T ss_dssp CHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHH
Confidence 9999998776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.064 Score=36.31 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 411 IEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 411 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
.++++.+++++.+.+ +.+ ...+-.+.-+|.+.|++++|.+.++.+++
T Consensus 54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555554421 111 12333444445555555555555555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=1.5 Score=37.86 Aligned_cols=382 Identities=10% Similarity=0.050 Sum_probs=197.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc--CChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcC
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA--KRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVFRCL 129 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 129 (504)
....+.|+...+.++...+... | ...|...-..-... ....++..+ +.+..-.|-. ..-...+..+.+.+
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~F---l~~~p~~P~~~~lr~~~l~~L~~~~ 86 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNF---VRANPTLPPARTLQSRFVNELARRE 86 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHHhcc
Confidence 3456788999988888887532 2 22343332222222 233333333 3332111111 12233455667777
Q ss_pred ChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHH
Q 048258 130 DPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILD 209 (504)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (504)
++....+.+ ...| .+...--....+....|+..+|...+..+-..|.. .+ +....++.
T Consensus 87 ~w~~~~~~~----~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p----------------~~c~~l~~ 144 (450)
T d1qsaa1 87 DWRGLLAFS----PEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QP----------------NACDKLFS 144 (450)
T ss_dssp CHHHHHHHC----CSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CC----------------THHHHHHH
T ss_pred CHHHHHHhc----cCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cc----------------hHHHHHHH
Confidence 776644333 2222 23343345667777888888888888776554422 11 22233344
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048258 210 TFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPN 289 (504)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 289 (504)
.+...| ..+...+-.-+......|+...|..+...+. ..........+..... ...+.... ... .++
T Consensus 145 ~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~----~~~~~~~~a~~~l~~~---p~~~~~~~---~~~--~~~ 211 (450)
T d1qsaa1 145 VWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANN---PNTVLTFA---RTT--GAT 211 (450)
T ss_dssp HHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHC---GGGHHHHH---HHS--CCC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCC----hhHHHHHHHHHHHHhC---hHhHHHHH---hcC--CCC
Confidence 444443 3344444445555566677777766554332 1122333344433322 22222221 111 122
Q ss_pred hhhHHHHHHHHhc--CCchHHHHHHHHHHHHCCCCccHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 048258 290 LVTFNTLISGHCK--DAEVHKTRELLVMLLECGFKPDKFTFNSMI----DCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363 (504)
Q Consensus 290 ~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (504)
......+..++.+ ..+.+.+...+......... +......+- ......+..+.+...+......+. +....
T Consensus 212 ~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 288 (450)
T d1qsaa1 212 DFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLI 288 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHH
T ss_pred hhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHH
Confidence 2332333333332 35677888888877653322 222222222 223345667888888887776532 44444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 048258 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKS 443 (504)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (504)
...+......+++..+...+..+.... .....-.--+..++...|+.+.|...|..+.. .++ |-..+.+ .+.
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa-~~L 360 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAA-QRI 360 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHH-HHT
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHH-HHc
Confidence 445555667789999999998876431 22233445567888899999999999998875 232 4333322 222
Q ss_pred CChhHHHHHHHHHHhcCCCCC-hh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 444 GRFDEAKQTFLSMEQNGCNPD-SY-----TSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 444 g~~~~a~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
|..-. +....++++ .. .-..-+..+...|+...|...+..+.+.
T Consensus 361 g~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~ 410 (450)
T d1qsaa1 361 GEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (450)
T ss_dssp TCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC
Confidence 32100 000000000 00 1113356677889999999998887653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.46 E-value=0.64 Score=31.07 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=29.6
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 187 TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
.+...+.....+|+-+.-.++++.+.+.+ ++++.....+..+|.+.|...++.+++.++.+.|
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33444444444455454445544444432 4444455555555555555555555555544444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.14 E-value=0.58 Score=29.57 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 048258 410 KIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLIL 472 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 472 (504)
+.=++.+-++.+....+.|++....+.+.+|.+.+++..|+++++....+ ..++..+|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 44455566666666666677777777777777777777777777666644 223344555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.31 E-value=1 Score=30.28 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
+++.+++.+.+.++......+..+.-+|.+.|++++|.+.++.+.+.
T Consensus 56 ~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 56 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44444444444332211233334444445555555555555555444
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.09 E-value=1.1 Score=28.28 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
.-++.+-++.+......|++....+.+++|.+.+++.-|.++|+-...
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334445555555555556666666666666666666666666665554
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.70 E-value=3.1 Score=28.83 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=76.7
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 048258 23 SNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRV 102 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 102 (504)
.++.+-|+++ ..+.|.+--...|..-...+...|++.+|-.+.-...+ |+-.+..|.+.+-.+=..-|...-.+..
T Consensus 12 l~n~~la~~l---A~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~Y 87 (157)
T d1bpoa1 12 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 87 (157)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHH---HHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHH
Confidence 4666666544 44556666777788888899999999999988877654 4556777777666554566777888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 048258 103 LEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELL 138 (504)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (504)
|..+.+.|. .|..--..+++.-...|+.+-....+
T Consensus 88 F~~Ll~~~~-LN~~ESlEl~r~vL~q~r~~lve~Wl 122 (157)
T d1bpoa1 88 FGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWL 122 (157)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcCC-CchHHhHHHHHHHHhcCcHHHHHHHH
Confidence 888888763 45554455666666666665554443
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.52 E-value=3.6 Score=28.54 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=85.0
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh
Q 048258 3 FLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 3 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
+.|++=.-..|..-+..+...|++.+|-.+-....+ |+-.++.|.+..-.+-..-|+..-.+.+|..+.+.| +.|..-
T Consensus 24 r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~-~LN~~E 101 (157)
T d1bpoa1 24 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYE 101 (157)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHH
T ss_pred hcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCchHH
Confidence 345556666788889999999999999999887764 345677777766555455677788888999888877 456655
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRF 141 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (504)
-.-+++.....|+.+-..+.+.+ ..+..+.. +..++. ..|..-|+.+|.+.
T Consensus 102 SlEl~r~vL~q~r~~lve~Wl~e---~KL~~SEe-LGDlv~----~~d~~lAl~IY~ka 152 (157)
T d1bpoa1 102 SLELCRPVLQQGRKQLLEKWLKE---DKLECSEE-LGDLVK----SVDPTLALSVYLRA 152 (157)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHH-HHHHHH----HHCSHHHHHHHHHH
T ss_pred hHHHHHHHHhcCcHHHHHHHHHc---CCccCcHH-HHHHHH----HcCHHHHHHHHHHc
Confidence 55667777777776666555333 22333332 333332 23555566665543
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