Citrus Sinensis ID: 048292

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MELVASKNNETEHQEHANTCFHRTAENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIVKSKLQLPIAFHNNNIYNFT
Secondary Structure (PSIPRED)
cEEEccccccccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
melvasknnetehqehantcfhrtaenevttnlrsgkgqsfshgrhharTAHGILNIIGWGILLPIGVIIARYLrrfpieydewhplhmlCQISGYILGTVGWGIGLwlgnsskhytlktHRILGILVFAFATIQILTSflqprreneCSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIVKSKLqlpiafhnnniynft
Flexible Loop (DISEMBL)
melvasknnetehqehantcfhrtaENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIVKSKLqlpiafhnnniynft
Low Complexity Region (SEG)
MELVASKNNETEHQEHANTCFHRTAENEVTTNLRSGKGQSFSHGRHHARTAHgilniigwgillpigviiARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWlyvailallaflaaalEIFRWIVKSKLQLPIAFHNNNIYNFT
Disordered region (IsUnstruct)
**********************************************HARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIVKSKLQLPIAFHNNNIYN**
Disordered Region (DISOPRED)
MELV*****************************************HHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIV*******************
Disordered Region (DISEMBL)
****************ANTCFHRTAENEVTTNLRSG**********HARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIVKSKLQLPIAFHNNNIYNFT
Disordered Region (DISPRO)
*******************************************GRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIVKSKLQL*************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELVASKNNETEHQEHANTCFHRTAENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIVKSKLQLPIAFHNNNIYNFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
224117944	247	predicted protein [Populus trichocarpa]	0.877	0.813	0.549	8e-65
255554801	260	conserved hypothetical protein [Ricinus	0.960	0.846	0.545	4e-62
359483337	245	PREDICTED: uncharacterized protein LOC10	0.925	0.865	0.506	1e-49
225460903	457	PREDICTED: ferric-chelate reductase 1 [V	0.890	0.446	0.441	6e-47
147861920	457	hypothetical protein VITISV_024615 [Viti	0.890	0.446	0.441	9e-47
357494649	421	Dopamine beta-monooxygenase [Medicago tr	0.829	0.451	0.453	3e-41
356553557	407	PREDICTED: uncharacterized protein LOC10	0.764	0.429	0.448	1e-39
449463266	432	PREDICTED: uncharacterized protein LOC10	0.781	0.414	0.434	1e-39
326518276	384	predicted protein [Hordeum vulgare subsp	0.781	0.466	0.446	1e-39
242041893	387	hypothetical protein SORBIDRAFT_01g04414	0.781	0.462	0.458	7e-39

>gi|224117944|ref|XP_002331518.1| predicted protein [Populus trichocarpa] gi|222873742|gb|EEF10873.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 152/204 (74%), Gaps = 3/204 (1%)

Query: 7   KNNETEHQEHANTCFHRTAENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPI 66
           +N + +  +H +    R  EN  TTNLRS  GQ   H R H R  HG+LNIIGWG LLP+
Sbjct: 42  ENIKPQRDDHTSL---RGTENAETTNLRSWSGQIALHHRRHLRNTHGVLNIIGWGTLLPV 98

Query: 67  GVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGI 126
           G I+AR  R+FP++ DEW+  H+LCQ  GYI+G VGW  G+WLGNSSK Y+L+ HRILGI
Sbjct: 99  GAIVARSFRKFPLKCDEWYKFHVLCQTLGYIIGAVGWSFGMWLGNSSKQYSLRAHRILGI 158

Query: 127 LVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWK 186
           ++F FAT Q+L  +LQP+RENEC +WW+I+H+ +GY ++++ +ANIFQGI H+ HAEKWK
Sbjct: 159 VIFTFATAQMLALYLQPKRENECRRWWKIYHKILGYLLISMIVANIFQGIDHKDHAEKWK 218

Query: 187 WLYVAILALLAFLAAALEIFRWIV 210
           W+YV IL++L+F A  LEI R+++
Sbjct: 219 WIYVGILSVLSFSALVLEILRFVM 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554801|ref|XP_002518438.1| conserved hypothetical protein [Ricinus communis] gi|223542283|gb|EEF43825.1| conserved hypothetical protein [Ricinus communis]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/220 (54%), Positives = 160/220 (72%)

Query: 10  ETEHQEHANTCFHRTAENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVI 69
           E+   +  ++  H T     TTNL S KG+S SH RHH R AHGILNIIGWG LLP GVI
Sbjct: 41  ESTKSQMNDSFPHGTENGAGTTNLGSWKGKSGSHHRHHFRNAHGILNIIGWGALLPTGVI 100

Query: 70  IARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVF 129
           +ARY ++ P++ +EW+ LH LCQ SGYI+G VGWG+GLWLGNSSK +TLKTHRILGI++F
Sbjct: 101 VARYFKKVPLKCEEWYNLHTLCQTSGYIVGAVGWGVGLWLGNSSKQHTLKTHRILGIIIF 160

Query: 130 AFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLY 189
             AT+Q+L   LQP+++++  ++WEI+HQ +GY ++A+ IANIFQG+ +Q+H EKWKW+Y
Sbjct: 161 TSATVQMLALCLQPKKDDDYRRYWEIYHQILGYALIAIIIANIFQGVHNQAHPEKWKWIY 220

Query: 190 VAILALLAFLAAALEIFRWIVKSKLQLPIAFHNNNIYNFT 229
           V IL +L  ++ ALEIFRW+        + F  NN Y  T
Sbjct: 221 VGILVILGGVSLALEIFRWVKPRIKHQQMPFEINNTYTCT 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483337|ref|XP_002264108.2| PREDICTED: uncharacterized protein LOC100260556 [Vitis vinifera] gi|302144101|emb|CBI23206.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/215 (50%), Positives = 146/215 (67%), Gaps = 3/215 (1%)

Query: 12  EHQEHANTCFHRTAENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIA 71
           E  E       +  +  VTT+L S + +   H RHH R  HGILNIIGWG LLP+G IIA
Sbjct: 30  EVYELPTPATSQKTDTGVTTDL-SWQRRRVWHHRHHLRNVHGILNIIGWGTLLPLGAIIA 88

Query: 72  RYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAF 131
           RY R+FP+E  EW  LH+LCQ  GY+LG++GW IG+WLGNSS +YT  +HR+LGI++F F
Sbjct: 89  RYFRKFPMECSEWFTLHILCQTLGYLLGSLGWAIGIWLGNSSINYTFHSHRVLGIIIFTF 148

Query: 132 ATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVA 191
           +T+Q+ +  LQPRREN+C K+WEI H+ +GY ++ L + NIF GI HQS A KW W YV 
Sbjct: 149 STLQMFSIALQPRRENKCRKYWEICHRLLGYVLMVLIMTNIFVGINHQSPAAKWIWFYVG 208

Query: 192 ILALLAFLAAALEIFRWIVKSKLQLPIAFHNNNIY 226
           +L ++  ++ ALEI RWI    +Q      N++IY
Sbjct: 209 VLVVMGLVSIALEIVRWI--KLVQNQTVLLNSSIY 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460903|ref|XP_002277569.1| PREDICTED: ferric-chelate reductase 1 [Vitis vinifera] gi|297737469|emb|CBI26670.3| unnamed protein product [Vitis vinifera]

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 131/206 (63%), Gaps = 2/206 (0%)

Query: 4   VASKNNETEHQEHANTCFHRTAENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGIL 63
           V +K +  E + H  T   +  ++  T NL +G+G S    R H RT HGILNI+GWG L
Sbjct: 183 VGAKVDGNEPKMHPTTL--QNVDSTETINLNTGEGHSVGQHRRHLRTVHGILNIVGWGTL 240

Query: 64  LPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRI 123
           LP+GVI+ARY R+FP +   W   H+  QI GY LGT+GW IGL LG+SS++YT + HRI
Sbjct: 241 LPMGVIVARYFRKFPFKNTYWFLAHIYIQIIGYTLGTIGWAIGLVLGHSSRYYTFRIHRI 300

Query: 124 LGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAE 183
           L I +F F ++Q+L   L+P  ++E  K+W+++H  +GY+++AL   NIFQGI      +
Sbjct: 301 LAIFIFTFTSLQMLALRLKPETKDEYRKYWDMYHHFLGYSLLALISVNIFQGIAILKPDK 360

Query: 184 KWKWLYVAILALLAFLAAALEIFRWI 209
            WKW+Y+ +L  LA +    EI  W+
Sbjct: 361 TWKWVYIGVLGALASITLVFEICTWV 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147861920|emb|CAN80916.1| hypothetical protein VITISV_024615 [Vitis vinifera]

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 130/206 (63%), Gaps = 2/206 (0%)

Query: 4   VASKNNETEHQEHANTCFHRTAENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGIL 63
           V  K +  E + H  T   +  ++  T NL +G+G S    R H RT HGILNI+GWG L
Sbjct: 183 VGXKVDGNEPKMHPTTL--QNVDSTETINLNTGEGHSVGQHRRHLRTVHGILNIVGWGTL 240

Query: 64  LPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRI 123
           LP+GVI+ARY R+FP +   W   H+  QI GY LGT+GW IGL LG+SS++YT + HRI
Sbjct: 241 LPMGVIVARYFRKFPFKNTYWFLAHIYIQIIGYTLGTIGWAIGLVLGHSSRYYTFRIHRI 300

Query: 124 LGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAE 183
           L I +F F ++Q+L   L+P  ++E  K+W+++H  +GY+++AL   NIFQGI      +
Sbjct: 301 LAIFIFTFTSLQMLALRLKPETKDEYRKYWDMYHHFLGYSLLALISVNIFQGIAILKPDK 360

Query: 184 KWKWLYVAILALLAFLAAALEIFRWI 209
            WKW+Y+ +L  LA +    EI  W+
Sbjct: 361 TWKWVYIGVLGALASITLVFEICTWV 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494649|ref|XP_003617613.1| Dopamine beta-monooxygenase [Medicago truncatula] gi|355518948|gb|AET00572.1| Dopamine beta-monooxygenase [Medicago truncatula]

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 120/192 (62%), Gaps = 2/192 (1%)

Query: 19  TCFHRTAENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFP 78
           T  H     E T +L S  G+S        R+ HG+LNIIGWG LLP+GVII RY R +P
Sbjct: 196 TTLHNVDSTE-TIDLTSTDGRSRGQKLSFLRSVHGVLNIIGWGTLLPMGVIIPRYFRVYP 254

Query: 79  IEYDEW-HPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQIL 137
              D W   LH+ CQ +G+++GT GW IGL LG+SS++Y   THR  GIL+F F+TIQ+L
Sbjct: 255 FHKDPWWFYLHIGCQTTGFLIGTAGWVIGLVLGHSSRYYVFHTHRDFGILIFTFSTIQML 314

Query: 138 TSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLA 197
              L+P+  ++  K+W ++H  +GY ++A+ + NIF+GI        W+W Y+ IL  L 
Sbjct: 315 AFRLKPKSTDDYRKYWNMYHHFLGYGLLAIIVINIFKGINILHGGSSWRWSYIGILIGLG 374

Query: 198 FLAAALEIFRWI 209
            +A ALEIF WI
Sbjct: 375 TIAFALEIFTWI 386

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553557|ref|XP_003545121.1| PREDICTED: uncharacterized protein LOC100791697 [Glycine max]

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 35  SGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDE-WHPLHMLCQI 93
           +  G+S    R + R+ HG+LNIIGWG LLPIG+I ARY R FP +++  W  LH+ CQ+
Sbjct: 209 TDNGRSTGQYRSYLRSVHGVLNIIGWGTLLPIGIITARYFRVFPFKWEPMWFNLHIGCQL 268

Query: 94  SGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWW 153
           +G+++G  GW IGL LG+SS++YT   HR  GIL+F  +T+Q+L   L+P+  ++  K+W
Sbjct: 269 TGFLVGITGWAIGLSLGHSSRYYTFHAHRNYGILIFTLSTVQMLAFRLKPKVTDDYRKYW 328

Query: 154 EIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWI 209
            ++H  +GY ++A+   NIF+GI        WKW Y+  LALL  +A  LE+F WI
Sbjct: 329 NMYHHFLGYGLLAIIFINIFKGITILEGGVAWKWGYIGNLALLGTIAFGLEVFTWI 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463266|ref|XP_004149355.1| PREDICTED: uncharacterized protein LOC101222112 [Cucumis sativus]

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 3/182 (1%)

Query: 30  TTNLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEW-HPLH 88
           T  L +GK    +H + + R  HGILNIIGWG  LPIG IIAR+ R+FP E D W +  H
Sbjct: 198 TLELSTGKSTDMTHLKIYFRKVHGILNIIGWGTFLPIGAIIARFFRKFPFESDVWWYRTH 257

Query: 89  MLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENE 148
            +CQ++G+ +G VGWGIG+WL +SS  Y   THR+  I +F FAT+Q L    +P   ++
Sbjct: 258 EVCQLAGFAIGMVGWGIGMWLAHSSPDYIFNTHRVFAIFIFVFATLQTLAIKFRPSPTDD 317

Query: 149 CSKWWEIFHQSMGYTVVALSIANIFQG--IIHQSHAEKWKWLYVAILALLAFLAAALEIF 206
             K W I+H  +GY ++AL   NIF+G  I+   + EKW++  + IL  L  +   LE+ 
Sbjct: 318 SRKVWNIYHHFLGYALLALIYINIFEGMRILKPENKEKWRYAVIGILVTLGLVTLVLEVH 377

Query: 207 RW 208
            W
Sbjct: 378 TW 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326518276|dbj|BAJ88167.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 111/179 (62%)

Query: 32  NLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLC 91
           +  SG     S+ R H R  HG+LN +GWG+L+P+G +IARYLR F      W  LH+ C
Sbjct: 185 DFLSGTSTGASNSRLHRRNLHGVLNAVGWGVLIPLGAMIARYLRVFEAADPAWFYLHITC 244

Query: 92  QISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSK 151
           QISGY+LG  GWG+GL LG+ SK  T  THR +GI +F  AT+Q+   FL+P ++N+   
Sbjct: 245 QISGYVLGVAGWGLGLKLGSESKGLTYSTHRNIGIAIFCLATLQVFALFLRPDKKNKYRV 304

Query: 152 WWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIV 210
           +W  +H S+GY+V+ L+  NIF+G+        WK  Y+ ILA LA +A  LE   W +
Sbjct: 305 YWNAYHHSVGYSVIVLAAVNIFKGLNILKPVTGWKTSYIVILATLAGVALVLEAITWAI 363

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242041893|ref|XP_002468341.1| hypothetical protein SORBIDRAFT_01g044140 [Sorghum bicolor] gi|241922195|gb|EER95339.1| hypothetical protein SORBIDRAFT_01g044140 [Sorghum bicolor]

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/179 (45%), Positives = 111/179 (62%)

Query: 32  NLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLC 91
           +  SG   + S+ + H R  HG+LN I WGIL+PIG IIARYLR F      W  LH++C
Sbjct: 184 DFLSGSSTAASNSKLHRRNIHGLLNAIAWGILIPIGAIIARYLRVFESADPAWFYLHIVC 243

Query: 92  QISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSK 151
           Q SGYILG  GWG+GL LG+ S   T K HR LGI +F+ AT+Q+    L+P ++N+   
Sbjct: 244 QCSGYILGVAGWGLGLKLGSESAGITYKPHRNLGIAIFSLATLQVFALLLRPDKKNKYRL 303

Query: 152 WWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLAFLAAALEIFRWIV 210
           +W I+H S+GY+V+ LS  NIF+G+     A  +K  Y+ ILA L  +A  LE   W +
Sbjct: 304 YWNIYHHSVGYSVIVLSAINIFKGLDILQPASGYKTAYIVILATLGGIALCLEAITWPI 362

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2130789	402	AT4G17280 [Arabidopsis thalian	0.873	0.497	0.312	2e-24
TAIR|locus:2168948	395	AT5G47530 [Arabidopsis thalian	0.838	0.486	0.328	1.4e-23
TAIR|locus:505006660	404	AT5G35735 "AT5G35735" [Arabido	0.502	0.284	0.393	6.2e-23
TAIR|locus:2123271	394	AT4G12980 "AT4G12980" [Arabido	0.777	0.451	0.301	8.4e-23
TAIR|locus:2090240	393	AT3G25290 "AT3G25290" [Arabido	0.624	0.363	0.328	1.7e-21
TAIR|locus:2049254	404	AT2G04850 [Arabidopsis thalian	0.458	0.259	0.371	1.9e-17
TAIR|locus:2077690	466	AT3G59070 [Arabidopsis thalian	0.497	0.244	0.330	1.3e-16
TAIR|locus:2091097	369	AT3G07570 [Arabidopsis thalian	0.484	0.300	0.301	2.9e-11
TAIR|locus:2076770	398	AT3G61750 [Arabidopsis thalian	0.576	0.331	0.280	4.3e-10
TAIR|locus:2052846	257	AT2G30890 "AT2G30890" [Arabido	0.406	0.361	0.316	7.5e-05

TAIR|locus:2130789 AT4G17280 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 66/211 (31%), Positives = 95/211 (45%)

Query:    22 HRTAENEV----TTNLRSG----KGQSFSHGRHHARTAHXXXXXXXXXXXXXXXXXXARY 73
             H T+ N V    T NL SG     G +    +   R  H                  ARY
Sbjct:   181 HPTSGNNVRSVSTLNLVSGVSAAAGGAGGSSKLRKRNIHGILNGVSWGIMMPLGAIIARY 240

Query:    74 LRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFAT 133
             LR        W  +H+ CQ S YI+G  GW  GL LG  S      THR +GI +F+ AT
Sbjct:   241 LRVAKSADPAWFYIHVFCQASAYIIGVAGWATGLKLGGDSPGIQYSTHRAIGIALFSLAT 300

Query:   134 IQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWXXXXXX 193
             +Q+   FL+P+ E++   +W I+H ++GYT++ L + N+F+G+   S  ++WK       
Sbjct:   301 VQVFAMFLRPKPEHKHRLYWNIYHHTIGYTIIILGVVNVFKGLGILSPKKQWKNAYIGII 360

Query:   194 XXXXXXXXXXEIFRWIV---KSKLQLPIAFH 221
                       E F W V   + KL+   A H
Sbjct:   361 VVLAIVATLLEAFTWYVVIKRRKLEAKTAQH 391

GO:0005576 "extracellular region" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2168948 AT5G47530 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 66/201 (32%), Positives = 91/201 (45%)

Query:    22 HRTAENEV----TTNLRSGKGQSFSHGRHHA-----RTAHXXXXXXXXXXXXXXXXXXAR 72
             H T+ N V    T NL SG   S S G   A     R  H                  AR
Sbjct:   172 HPTSGNNVRSVSTLNLVSGASGSTSTGAGGASKLRKRNIHGILNGVSWGIMMPIGAIIAR 231

Query:    73 YLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFA 132
             YL+        W  LH+ CQ S YI+G  GW  GL LGN S       HR +GI +F  A
Sbjct:   232 YLKVSKSADPAWFYLHVFCQSSAYIIGVAGWATGLKLGNESAGIQFTFHRAVGIALFCLA 291

Query:   133 TIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWXXXXX 192
             TIQ+   FL+P+ E++   +W I+H ++GY+V+ L++ N+F+G+   S  ++W+      
Sbjct:   292 TIQVFAMFLRPKPEHKYRVYWNIYHHTVGYSVIILAVVNVFKGLDILSPEKQWRNAYTAI 351

Query:   193 XXXXXXXXXXXEIFRWIVKSK 213
                        E F W V  K
Sbjct:   352 IVVLGIVAVVLEGFTWYVVIK 372

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:505006660 AT5G35735 "AT5G35735" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 6.2e-23, P = 6.2e-23
 Identities = 46/117 (39%), Positives = 72/117 (61%)

Query:    71 ARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFA 130
             ARY++ F      W  LH+  Q+SGY++G  GW  G+ LGN S   +  THR LGI +F 
Sbjct:   230 ARYMKVFADP--TWFYLHIAFQVSGYVIGVAGWATGIKLGNDSPGTSYSTHRNLGIALFT 287

Query:   131 FATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKW 187
             FAT+Q+    ++P+ +++   +W ++H ++GYT + LSI NIF+G       +KW+W
Sbjct:   288 FATLQVFALLVRPKPDHKYRTYWNVYHHTVGYTTIILSIVNIFKGFDILDPEDKWRW 344

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2123271 AT4G12980 "AT4G12980" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 8.4e-23, P = 8.4e-23
 Identities = 54/179 (30%), Positives = 84/179 (46%)

Query:    35 SGKGQSFSHGRHHARTAHXXXXXXXXXXXXXXXXXXARYLRRFPIEYDEWHPLHMLCQIS 94
             SG G +  + R H R  H                  ARY+R F      W  LH+ CQ S
Sbjct:   205 SGGGGA-GNSRIHKRNIHGILNAVSWGLLFPIGAMIARYMRIFESADPAWFYLHVSCQFS 263

Query:    95 GYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWE 154
              Y++G  GW  GL LG+ SK     THR +GI +F+ AT+Q+    L+PR++++    W 
Sbjct:   264 AYVIGVAGWATGLKLGSESKGIQYNTHRNIGICLFSIATLQMFAMLLRPRKDHKFRFVWN 323

Query:   155 IFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWXXXXXXXXXXXXXXXXEIFRWIVKSK 213
             I+H  +GY+++ L I N+F+G+   +    +K                 E+  W++  K
Sbjct:   324 IYHHGVGYSILILGIINVFKGLSILNPKHTYKTAYIAVIGTLGGITLLLEVVTWVIVLK 382

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2090240 AT3G25290 "AT3G25290" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 47/143 (32%), Positives = 72/143 (50%)

Query:    71 ARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFA 130
             ARY+R F      W  LH+ CQ S Y++G  GW  GL LGN S+      HR +GI +F 
Sbjct:   239 ARYMRVFDSADPAWFYLHVSCQFSAYVIGVAGWATGLKLGNESEGIRFSAHRNIGIALFT 298

Query:   131 FATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWXXX 190
              ATIQ+    L+P+++++   +W I+H  +GY ++ L I N+F+G+      + +K    
Sbjct:   299 LATIQMFAMLLRPKKDHKYRFYWNIYHHGVGYAILTLGIINVFKGLNILKPQDTYKTAYI 358

Query:   191 XXXXXXXXXXXXXEIFRWIVKSK 213
                          E   W+V  K
Sbjct:   359 AVIAVLGGIALLLEAITWVVVLK 381

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2049254 AT2G04850 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.9e-17, P = 1.9e-17
 Identities = 39/105 (37%), Positives = 62/105 (59%)

Query:    71 ARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFA 130
             ARYLR+       W  +H   Q++G++LGT+G+ IG+ LG++S   T   HR LGI  F 
Sbjct:   238 ARYLRQMQSIGPTWFYIHAAIQLTGFLLGTIGFSIGIVLGHNSPGVTYGLHRSLGIATFT 297

Query:   131 FATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQG 175
              A +Q L    +P+  N+  ++W+ +H  +GY  V + + N+FQG
Sbjct:   298 AAALQTLALLFRPKTTNKFRRYWKSYHHFVGYACVVMGVVNVFQG 342

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2077690 AT3G59070 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 39/118 (33%), Positives = 72/118 (61%)

Query:    71 ARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKT--HRILGILV 128
             ARY++ + +    W  +H++CQ +GY  G +G G+G  +   ++H  ++T  H ++G+L+
Sbjct:   239 ARYMKNYEVLDPTWFYIHVVCQTTGYFSGLIG-GLGTAI-YMARHTGMRTTLHTVIGLLL 296

Query:   129 FAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWK 186
             FA   +QIL+   +P ++++  K+W  +H +MGY V+ LSI NI++G+        WK
Sbjct:   297 FALGFLQILSLKARPNKDHKYRKYWNWYHHTMGYIVIVLSIYNIYKGLSILQPGSIWK 354

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2091097 AT3G07570 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 35/116 (30%), Positives = 63/116 (54%)

Query:    71 ARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFA 130
             AR+++++      W   H+  Q +G++LG  G   GL L N  K   +  H+ LGI +  
Sbjct:   232 ARHMKQWD---PTWFYAHIALQTTGFLLGLTGVICGLVLENRLKANNVSKHKGLGITILV 288

Query:   131 FATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHA-EKW 185
                +Q+L    +P ++++  K+W  +H ++G  ++ L+I+NIF GI H + A   W
Sbjct:   289 MGVLQMLALLARPDKQSKYRKYWNWYHHNIGRLLIILAISNIFYGI-HLAKAGTSW 343

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2076770 AT3G61750 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 39/139 (28%), Positives = 66/139 (47%)

Query:    71 ARYLR-RFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVF 129
             ARYLR + P+    W+ LH+  Q +G+I G     +G+ L N  +   +  HR +GI + 
Sbjct:   239 ARYLRHKDPL----WYYLHIGFQFTGFIFGLAAVILGIQLYNRIQP-DIPAHRGIGIFLL 293

Query:   130 AFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGI-IHQSHAEKWKWX 188
               +T+Q+L  F +P++E +  ++W  +H  +G   +     NI  GI +  +  + WK  
Sbjct:   294 VLSTLQVLAFFARPQKETKMRRYWNWYHHWIGRISLFFGAVNIVLGIRMADNGGDGWKIG 353

Query:   189 XXXXXXXXXXXXXXXEIFR 207
                            EIFR
Sbjct:   354 YGFVLSVTLLAFVVLEIFR 372

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2052846 AT2G30890 "AT2G30890" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 31/98 (31%), Positives = 54/98 (55%)

Query:    87 LHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRE 146
             LH+  Q+   IL T+G  + +   N+S  ++   H+ LGI ++     Q L  FL+P RE
Sbjct:    94 LHVTSQMVAVILVTIGAVMSVINFNNS--FS-NHHQQLGIGLYVIVWFQALLGFLRPPRE 150

Query:   147 NECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEK 184
              +  + W + H  +G ++  L I NI+ G+ H ++A+K
Sbjct:   151 EKARRKWFVGHWILGTSIAILGIINIYTGL-H-AYAKK 186

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01660021 hypothetical protein (247 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
cd08760	191	cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrom	6e-41
smart00665	129	smart00665, B561, Cytochrome b-561 / ferric reduct	3e-23
cd08554	131	cd08554, Cyt_b561, Eukaryotic cytochrome b(561)	1e-05

>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including the FRRS1 gene product

 Score =  137 bits (348), Expect = 6e-41
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 5/184 (2%)

Query: 24  TAENEVTTNLRSGKGQSFSHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDE 83
           +  +    +       S          AHG+L  I WGIL+PIG ++ARY          
Sbjct: 11  SGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLLGD---PV 67

Query: 84  WHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQP 143
           W  LH   Q+   +L   G+ +G+ L           H ILGI+V A A +Q L   L+P
Sbjct: 68  WFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRP 127

Query: 144 RRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQS--HAEKWKWLYVAILALLAFLAA 201
              ++    W   H+ +G   + L+I NIF G+        + WK  Y  ++A+LA +  
Sbjct: 128 HPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYL 187

Query: 202 ALEI 205
            LEI
Sbjct: 188 ILEI 191

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 191

>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane domain

 Score = 90.4 bits (225), Expect = 3e-23
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 5/129 (3%)

Query: 52  HGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGN 111
           H +L I+G+G L+   +++AR L RF +    W  LH++ QI   +LG +G        N
Sbjct: 2   HPVLMILGFGFLMGEAILVARPLTRF-LSKPTWFLLHVVLQILALVLGVIGLLAIFISHN 60

Query: 112 SSKHYTLKT-HRILGILVFAFATIQILTSFLQPRRENECSKW---WEIFHQSMGYTVVAL 167
            S      + H  LG+  F  A +Q L+ FL+P      SK+      +H+ +G     L
Sbjct: 61  ESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFIL 120

Query: 168 SIANIFQGI 176
           +I  IF G+
Sbjct: 121 AIVTIFLGL 129

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders. Length = 129

>gnl|CDD|176489 cd08554, Cyt_b561, Eukaryotic cytochrome b(561)

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 10/132 (7%)

Query: 51  AHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLG 110
            H +L +IG+  L+   +++ R  R           LH +  +  ++LG VG        
Sbjct: 4   WHPLLMVIGFVFLMGEALLVYRVFRLLTKRA--LKLLHAILHLLAFVLGLVGLLAVFLFH 61

Query: 111 NSSK---HYTLKTHRILGILVFAFATIQILT---SFLQPRRENECSKWWEIFHQSMGYTV 164
           N+      Y+L  H  LG+       +Q L+    FL P            FH+  G  +
Sbjct: 62  NAGGIANLYSL--HSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAI 119

Query: 165 VALSIANIFQGI 176
             L+IA I  GI
Sbjct: 120 FVLAIATILLGI 131

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	100.0
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	99.95
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	99.93
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	99.91
KOG4293	403	consensus Predicted membrane protein, contains DoH	99.9
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	99.89
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	99.88
PLN02351	242	cytochromes b561 family protein	99.88
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	99.87
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	99.87
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	99.86
PLN02810	231	carbon-monoxide oxygenase	99.86
PLN02680	232	carbon-monoxide oxygenase	99.85
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	99.84
KOG1619	245	consensus Cytochrome b [Energy production and conv	99.76
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	99.54
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	97.1
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	97.08
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	97.06
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	96.94
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	96.94
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	96.9
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	96.89
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	96.89
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	96.72
PLN02680	232	carbon-monoxide oxygenase	96.43
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	96.25
PLN02810	231	carbon-monoxide oxygenase	95.96
PLN02351	242	cytochromes b561 family protein	95.81
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	95.59
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	94.71
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	94.43
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	93.87
PF01794	125	Ferric_reduct: Ferric reductase like transmembrane	93.4
KOG1619	245	consensus Cytochrome b [Energy production and conv	92.93
COG2717	209	Predicted membrane protein [Function unknown]	92.17
PF13172	34	PepSY_TM_1: PepSY-associated TM helix	91.69
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	91.68
PF10067	103	DUF2306: Predicted membrane protein (DUF2306); Int	91.57
PRK11513	176	cytochrome b561; Provisional	89.48
COG5658	204	Predicted integral membrane protein [Function unkn	89.01
PF01292	182	Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPr	88.45
PF13706	37	PepSY_TM_3: PepSY-associated TM helix	88.42
PF10951	347	DUF2776: Protein of unknown function (DUF2776); In	88.13
COG3038	181	CybB Cytochrome B561 [Energy production and conver	87.13
PRK05771	646	V-type ATP synthase subunit I; Validated	84.75
PF01292	182	Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPr	84.17
PF13703	88	PepSY_TM_2: PepSY-associated TM helix	83.99
PF13630	76	SdpI: SdpI/YhfL protein family	83.08
PRK05419	205	putative sulfite oxidase subunit YedZ; Reviewed	80.62

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=100.00  E-value=2.1e-34  Score=241.45  Aligned_cols=176  Identities=32%  Similarity=0.541  Sum_probs=155.7

Q ss_pred             CcceEEeecCCccccccC-----------CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHH
Q 048292           26 ENEVTTNLRSGKGQSFSH-----------GRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQIS   94 (229)
Q Consensus        26 ~~~~~~dl~~g~~~~~~~-----------~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~   94 (229)
                      +++.++|+++|++++.+.           +.+..+++||++|++||++++|.|++++||++   .+++.||++|+.+|++
T Consensus         2 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~---~~~~~~~~~H~~~q~~   78 (191)
T cd08760           2 KSSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFL---LGDPVWFYLHAGLQLL   78 (191)
T ss_pred             CcceEEEeccceeccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCchhHHHHHHHHHH
Confidence            356788888887654332           35778999999999999999999999999974   3578999999999999


Q ss_pred             HHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHH
Q 048292           95 GYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQ  174 (229)
Q Consensus        95 a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~  174 (229)
                      +++++++|+++++.......++.+++|+++|+++++++++|+++|++||.+..+.|+.|+++|+++|++++++|++|+.+
T Consensus        79 ~~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~  158 (191)
T cd08760          79 AVLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFL  158 (191)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998752233455899999999999999999999999999988899999999999999999999999999


Q ss_pred             HhhhccCC--CchHHHHHHHHHHHHHHHHHHH
Q 048292          175 GIIHQSHA--EKWKWLYVAILALLAFLAAALE  204 (229)
Q Consensus       175 Gl~~~~~~--~~~~~~~~~~~~~~~~v~i~le  204 (229)
                      |+.+.+..  +.+.++|.++++++.++++++|
T Consensus       159 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (191)
T cd08760         159 GLDLAGAGTPKAWKIAYGVVVAVLALVYLILE  190 (191)
T ss_pred             HHHHhcCCcccchhhHHHHHHHHHHHHHHHHc
Confidence            99999876  7888999999999999988887

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=99.95  E-value=1.4e-27  Score=188.47  Aligned_cols=124  Identities=29%  Similarity=0.507  Sum_probs=111.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHH-hccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhhHHHHHH
Q 048292           51 AHGILNIIGWGILLPIGVIIARY-LRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHRILGILV  128 (229)
Q Consensus        51 ~Hg~lM~iAw~iL~P~gil~aR~-~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~~lG~~v  128 (229)
                      +||++|++||++++|.|++++|+ .+.  .+++.|+++|+.+|+++++++++|+++++...++. .++.+++|+++|+++
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~--~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~   78 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRF--LSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAA   78 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHH
Confidence            59999999999999999999997 333  46789999999999999999999999999875543 245589999999999


Q ss_pred             HHHHHHHHHHhhhccCCC---CCCcchhHhHHHHHHHHHHHHHHHHHHHHh
Q 048292          129 FAFATIQILTSFLQPRRE---NECSKWWEIFHQSMGYTVVALSIANIFQGI  176 (229)
Q Consensus       129 ~~l~~lQ~l~G~~rp~~~---~~~R~~~~~~H~~~G~~~~~La~vni~~Gl  176 (229)
                      +++.++|++.|+++|.++   .+.|+.++++|+++|++++++|++|+.+|+
T Consensus        79 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~  129 (129)
T smart00665       79 FVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL  129 (129)
T ss_pred             HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999999999988775   678999999999999999999999999985

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=99.93  E-value=4.7e-25  Score=174.94  Aligned_cols=129  Identities=28%  Similarity=0.447  Sum_probs=111.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchhhHHHHHHH
Q 048292           51 AHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTHRILGILVF  129 (229)
Q Consensus        51 ~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H~~lG~~v~  129 (229)
                      +||++|++||++++|.|++++|+.+..+.+++.|++.|..+|++++++.++|+++++...++ +.++.+++|+++|++++
T Consensus         1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~   80 (137)
T PF03188_consen    1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF   80 (137)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence            69999999999999999999997432234678899999999999999999999999886543 23455899999999999


Q ss_pred             HHHHHHHHHhhhccC---CCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          130 AFATIQILTSFLQPR---RENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       130 ~l~~lQ~l~G~~rp~---~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      ++.++|++.|++++.   .+.+.|+.+++.|+++|++++++|++|+.+|+...
T Consensus        81 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~  133 (137)
T PF03188_consen   81 VLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEK  133 (137)
T ss_pred             HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998644   44567888999999999999999999999999653

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=99.91  E-value=3.7e-24  Score=169.17  Aligned_cols=126  Identities=23%  Similarity=0.336  Sum_probs=110.4

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchhhHHHHH
Q 048292           49 RTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTHRILGIL  127 (229)
Q Consensus        49 ~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H~~lG~~  127 (229)
                      +++||++|+++|++++|.|++.+|++|+.  +++.|+++|+.+|++++++.++|+.+++...++ ...+.+++|+++|++
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~--~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~   79 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLL--TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLA   79 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence            57999999999999999999999998763  577899999999999999999999999986532 234557999999999


Q ss_pred             HHHHHHHHHHHhhhcc---CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHh
Q 048292          128 VFAFATIQILTSFLQP---RRENECSKWWEIFHQSMGYTVVALSIANIFQGI  176 (229)
Q Consensus       128 v~~l~~lQ~l~G~~rp---~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl  176 (229)
                      ++++.++|++.|+.++   .+..+.|+.++++|+++|+++++++++|+++|.
T Consensus        80 ~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~  131 (131)
T cd08554          80 TVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI  131 (131)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999998754   333335899999999999999999999999884

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]

Probab=99.90  E-value=2.1e-26  Score=213.12  Aligned_cols=193  Identities=35%  Similarity=0.632  Sum_probs=167.0

Q ss_pred             CcceEEeecC--Cccccc-----cCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHH
Q 048292           26 ENEVTTNLRS--GKGQSF-----SHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYIL   98 (229)
Q Consensus        26 ~~~~~~dl~~--g~~~~~-----~~~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il   98 (229)
                      .....+|+..  |..+..     +.+.......||++|..+|++++|.|++.+||+|..+...+.||+.|+.+|..++++
T Consensus       182 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~  261 (403)
T KOG4293|consen  182 ASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFIL  261 (403)
T ss_pred             cceeecccccccccccccccCcccCcchhccccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEE
Confidence            3445566665  332222     223345566699999999999999999999999987777999999999999999999


Q ss_pred             HHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 048292           99 GTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIH  178 (229)
Q Consensus        99 ~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~  178 (229)
                      ...|+..+.+..+++....+..|..+|+.++++.++|++..++||.++++.|++|||+|+..||..+++|++|++.|+.+
T Consensus       262 ~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l  341 (403)
T KOG4293|consen  262 GVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLEL  341 (403)
T ss_pred             EeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhh
Confidence            99999999887766656667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 048292          179 QSHAEKWK-WLYVAILALLAFLAAALEIFRWIVKSKLQLPI  218 (229)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~~~~v~i~lev~~w~~~~r~~~~~  218 (229)
                      .++...|. ++|+.+.+...++.+.+|..+|+...++.+|+
T Consensus       342 ~~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~  382 (403)
T KOG4293|consen  342 LYPGQSWIKLGYGSILAVLGLIAVILEILSWRITIERPSPS  382 (403)
T ss_pred             hcCCCceEEeeeeeEEEEechhhhhhhhheeeeeecccCcc
Confidence            99888887 78999999999999999999998887776663

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=99.89  E-value=1.7e-22  Score=162.41  Aligned_cols=133  Identities=19%  Similarity=0.245  Sum_probs=115.6

Q ss_pred             CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhh
Q 048292           44 GRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHR  122 (229)
Q Consensus        44 ~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~  122 (229)
                      +....+++|+.+|.+++.++++.|+++.|..|   ..++.+..+|+.+|.+++++.++|+...+...++. ..+.+++|+
T Consensus         3 ~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~---~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHS   79 (144)
T cd08766           3 NKGLIFNVHPVLMVIGFIFLAGEAILAYKTVP---GSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHS   79 (144)
T ss_pred             CCcceeeccHHHHHHHHHHHHHHHHHHhhccc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHH
Confidence            34568999999999999999999999988765   35777899999999999999999998888765432 345689999


Q ss_pred             HHHHHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          123 ILGILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       123 ~lG~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      |+|++++++..+|.+.|+   +.|....+.|+...++|+++|++++++|++++.+|+.+.
T Consensus        80 wlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek  139 (144)
T cd08766          80 WLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEK  139 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999996   377765567888899999999999999999999999875

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=99.88  E-value=5.8e-22  Score=165.25  Aligned_cols=135  Identities=16%  Similarity=0.194  Sum_probs=112.2

Q ss_pred             CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchh
Q 048292           44 GRHHARTAHGILNIIGWGILLPIGVIIARYLRRF-PIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTH  121 (229)
Q Consensus        44 ~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~-~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H  121 (229)
                      ..+.++++||++|+++|++++|.|++..|-.... +.+++.|+++|+.+|.+++++.++|+.+.+...++ +..+.+++|
T Consensus        16 ~~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H   95 (183)
T cd08761          16 PGTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWH   95 (183)
T ss_pred             CccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchh
Confidence            3456899999999999999999999975532211 13577899999999999999999999888876443 234558999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcc---CCC--CCCcchhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 048292          122 RILGILVFAFATIQILTSFLQP---RRE--NECSKWWEIFHQSMGYTVVALSIANIFQGIIH  178 (229)
Q Consensus       122 ~~lG~~v~~l~~lQ~l~G~~rp---~~~--~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~  178 (229)
                      +++|++++++.++|++.|+.++   ...  .++|+.++++|+++|++++++|++|+.+|++.
T Consensus        96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761          96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999998632   222  25788899999999999999999999999988

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02351 cytochromes b561 family protein

Probab=99.88  E-value=1.2e-21  Score=168.15  Aligned_cols=133  Identities=16%  Similarity=0.210  Sum_probs=111.5

Q ss_pred             CCcchh-HHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhh
Q 048292           44 GRHHAR-TAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHR  122 (229)
Q Consensus        44 ~~~~~~-~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~  122 (229)
                      +.+..+ ++|+++|.+++.+|.+.|++++|.+|.   .++.|+.+|+.+|.+|++++++|+...+...++...+.++.|+
T Consensus        45 ~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~---~~k~~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~~i~nlySLHS  121 (242)
T PLN02351         45 QEDLVYAVLHPLLMVIGFILISGEAILVHRWLPG---SRKTKKSVHLWLQGLALASGVFGIWTKFHGQDGIVANFYSLHS  121 (242)
T ss_pred             CccceeecccHHHHHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHH
Confidence            334455 799999999999999999999998863   4566999999999999999999998832211111255689999


Q ss_pred             HHHHHHHHHHHHHHHHhhh---ccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          123 ILGILVFAFATIQILTSFL---QPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       123 ~lG~~v~~l~~lQ~l~G~~---rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      |+|++++++..+|.+.|++   .|......|....++|..+|+.++++|++++.+|+.+.
T Consensus       122 WlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EK  181 (242)
T PLN02351        122 WMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEK  181 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999973   56555567888899999999999999999999999775

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=99.87  E-value=1.8e-21  Score=165.52  Aligned_cols=159  Identities=18%  Similarity=0.212  Sum_probs=124.1

Q ss_pred             CcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC---CCCCCcchh
Q 048292           45 RHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS---SKHYTLKTH  121 (229)
Q Consensus        45 ~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~---~~~~~~~~H  121 (229)
                      ....+++|+.+|++++.++++.|+++.|..|..  .++.+..+|+.+|.+|++++++|+...+...++   ...+.++.|
T Consensus        20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~--~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlH   97 (214)
T cd08764          20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNT--RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLH   97 (214)
T ss_pred             CCceEeecHHHHHHHHHHHHHHHHHHhccCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchH
Confidence            345799999999999999999999999987742  456678899999999999999999887765332   234568999


Q ss_pred             hHHHHHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhcc-----C-----CCchHHH
Q 048292          122 RILGILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQS-----H-----AEKWKWL  188 (229)
Q Consensus       122 ~~lG~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~-----~-----~~~~~~~  188 (229)
                      +|+|++++++..+|.+.|+   +.|......|+...++|+++|+.+++++++++.+|+.+..     +     +......
T Consensus        98 SwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~e~~l~N  177 (214)
T cd08764          98 SWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPAEGVLGN  177 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhHHHHH
Confidence            9999999999999999997   4676554567777889999999999999999999997741     1     2233344


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 048292          189 YVAILALLAFLAAALEI  205 (229)
Q Consensus       189 ~~~~~~~~~~v~i~lev  205 (229)
                      ..+++.++.++.++.-+
T Consensus       178 ~~gl~~~~fg~~V~~~~  194 (214)
T cd08764         178 FIGIVLVIFGGLVVYLV  194 (214)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            55555554444444433

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=99.87  E-value=2.9e-21  Score=156.41  Aligned_cols=133  Identities=17%  Similarity=0.194  Sum_probs=115.3

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchhhHHH
Q 048292           47 HARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTHRILG  125 (229)
Q Consensus        47 ~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H~~lG  125 (229)
                      ..+++|+.||.+++.+++..++++.|..+..+.+++.+.++|+.+|.+++++.++|+...+...++ ...+.+++|+|+|
T Consensus        10 ~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlG   89 (153)
T cd08765          10 AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVG   89 (153)
T ss_pred             CeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence            479999999999999999999999875544334577789999999999999999999988886443 2355689999999


Q ss_pred             HHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          126 ILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       126 ~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      ++++++..+|.+.|+   +.|....+.|+...++|+++|+.+++++++++.+|+.+.
T Consensus        90 l~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek  146 (153)
T cd08765          90 LAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEK  146 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999996   367655567889999999999999999999999999875

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=99.86  E-value=4.4e-21  Score=158.50  Aligned_cols=132  Identities=21%  Similarity=0.216  Sum_probs=114.7

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhhHHHH
Q 048292           48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHRILGI  126 (229)
Q Consensus        48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~~lG~  126 (229)
                      .+++|+++|.+++.++...++++.|..+..+.+++.|+.+|..+|.++++++++|+..++...++. ..+.++.|+|+|+
T Consensus        34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl  113 (179)
T cd08762          34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGI  113 (179)
T ss_pred             ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHH
Confidence            699999999999999999999998865543335667899999999999999999999998875543 3556899999999


Q ss_pred             HHHHHHHHHHHHhhh---ccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          127 LVFAFATIQILTSFL---QPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       127 ~v~~l~~lQ~l~G~~---rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      +++++..+|.+.|++   .|....+.|....++|+.+|+.++++|++++.+|+.+.
T Consensus       114 ~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek  169 (179)
T cd08762         114 CTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEK  169 (179)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999973   55555567888899999999999999999999999875

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02810 carbon-monoxide oxygenase

Probab=99.86  E-value=2e-20  Score=159.53  Aligned_cols=156  Identities=21%  Similarity=0.206  Sum_probs=127.0

Q ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhhHH
Q 048292           46 HHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHRIL  124 (229)
Q Consensus        46 ~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~~l  124 (229)
                      +..+++|+++|.+++.++...++++.|.++.   .++.+..+|+.+|.++++++++|+...+...++. ..+.++.|+|+
T Consensus        44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~---~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWl  120 (231)
T PLN02810         44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL---KKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWL  120 (231)
T ss_pred             CceeeehHHHHHHHHHHHhhHHHHHhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHH
Confidence            4489999999999999999999999877653   4667789999999999999999999998865543 35669999999


Q ss_pred             HHHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhcc----C-------CCchHHHHH
Q 048292          125 GILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQS----H-------AEKWKWLYV  190 (229)
Q Consensus       125 G~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~----~-------~~~~~~~~~  190 (229)
                      |++++++..+|.+.|+   +.|......|....++|..+|..++++|++++.+|+.+..    .       +........
T Consensus       121 Gl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~  200 (231)
T PLN02810        121 GIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFT  200 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHH
Confidence            9999999999999997   5787766778888899999999999999999999998752    1       122334555


Q ss_pred             HHHHHHHHHHHHHH
Q 048292          191 AILALLAFLAAALE  204 (229)
Q Consensus       191 ~~~~~~~~v~i~le  204 (229)
                      +++.++.++.+++-
T Consensus       201 Glliv~fg~~V~~~  214 (231)
T PLN02810        201 AIITILYGAFVVLT  214 (231)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555555554443

>PLN02680 carbon-monoxide oxygenase

Probab=99.85  E-value=3.5e-20  Score=158.91  Aligned_cols=133  Identities=18%  Similarity=0.221  Sum_probs=114.3

Q ss_pred             CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhh
Q 048292           44 GRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHR  122 (229)
Q Consensus        44 ~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~  122 (229)
                      +....+++|+++|.+++.+++..+++..|..|   .+++.+..+|+.+|.+++++.++|+...+...++. ..+.+++|+
T Consensus        42 ~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~---~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHS  118 (232)
T PLN02680         42 NKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVP---GTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHS  118 (232)
T ss_pred             CCcceEechHHHHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHH
Confidence            44568999999999999999999999976554   45777889999999999999999999887765533 355689999


Q ss_pred             HHHHHHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          123 ILGILVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       123 ~lG~~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      |+|++++++..+|.+.|+   +.|....+.|+...++|+++|+.+++++++++.+|+.+.
T Consensus       119 WlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek  178 (232)
T PLN02680        119 WLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEK  178 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999996   467655556777789999999999999999999999775

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=99.84  E-value=3.6e-20  Score=148.85  Aligned_cols=130  Identities=19%  Similarity=0.237  Sum_probs=114.2

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCC-CCCCCcchhhHHHH
Q 048292           48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNS-SKHYTLKTHRILGI  126 (229)
Q Consensus        48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~-~~~~~~~~H~~lG~  126 (229)
                      .+++|+.+|++++.+++..++++.|..+.  .+++.+.++|+.+|.+++++.++|+...+...++ ..++.++.|+|+|+
T Consensus         6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~--~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl   83 (143)
T cd08763           6 QFNVHPLCMVLGLVFLCGEALLVYRVFRN--ETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGI   83 (143)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHH
Confidence            89999999999999999999999887654  3567788999999999999999999998876443 33556899999999


Q ss_pred             HHHHHHHHHHHHhh---hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          127 LVFAFATIQILTSF---LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       127 ~v~~l~~lQ~l~G~---~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      +++++..+|.+.|+   +.|....+.|..+.++|+++|+++++++++++.+|+.+.
T Consensus        84 ~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek  139 (143)
T cd08763          84 LTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEK  139 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999996   467766667899999999999999999999999999764

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=99.76  E-value=2.4e-18  Score=146.75  Aligned_cols=132  Identities=19%  Similarity=0.261  Sum_probs=116.1

Q ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCC-CCCcchhhHH
Q 048292           46 HHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSK-HYTLKTHRIL  124 (229)
Q Consensus        46 ~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~-~~~~~~H~~l  124 (229)
                      +..+++|+++|.++|.++--.++++.|.+|+.  .++.-.-+|..+|++|++++++|+...+...+... .+.++.|+|+
T Consensus        52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~--~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWl  129 (245)
T KOG1619|consen   52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT--SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWL  129 (245)
T ss_pred             chhcCcchHHHHHHHHHhccceeeeeehhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHH
Confidence            66899999999999999999999999998863  45556789999999999999999998887655432 4558999999


Q ss_pred             HHHHHHHHHHHHHHhhh---ccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          125 GILVFAFATIQILTSFL---QPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       125 G~~v~~l~~lQ~l~G~~---rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      |++++.+..+|.+.||+   .|.-..+.|....++|+.+|..++++|++|+.+|+.+.
T Consensus       130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek  187 (245)
T KOG1619|consen  130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEK  187 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999974   67666688999999999999999999999999999554

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=99.54  E-value=8e-14  Score=106.59  Aligned_cols=91  Identities=24%  Similarity=0.412  Sum_probs=77.6

Q ss_pred             cCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCC-CCCcch
Q 048292           42 SHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSK-HYTLKT  120 (229)
Q Consensus        42 ~~~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~-~~~~~~  120 (229)
                      +++.+....+|+++|.+||++++|+|++..+. |      .   ++|.++|++++++.++|+.++....+..+ -++++.
T Consensus        11 ~~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~------s---r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~   80 (105)
T PF10348_consen   11 PSPHRSALYAHIVLMTLAWVILYPIGLVLGNA-R------S---RWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNA   80 (105)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------c---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            34567889999999999999999999887553 3      2   35999999999999999999988654433 347899


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhc
Q 048292          121 HRILGILVFAFATIQILTSFLQ  142 (229)
Q Consensus       121 H~~lG~~v~~l~~lQ~l~G~~r  142 (229)
                      |.++|+++++++++|+++|+++
T Consensus        81 H~k~g~il~~l~~~q~~~gv~~  102 (105)
T PF10348_consen   81 HGKMGWILFVLMIVQVILGVIL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=97.10  E-value=0.0097  Score=49.66  Aligned_cols=97  Identities=14%  Similarity=0.105  Sum_probs=71.2

Q ss_pred             CCcchhhhHhHHHHHHHHHH-HHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292           81 YDEWHPLHMLCQISGYILGT-VGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS  159 (229)
Q Consensus        81 ~~~Wf~~H~~lq~~a~il~i-~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~  159 (229)
                      .+..++.|..++.+++.+.. +|..++-.... ++......|..+=++.+++.++-..+++...   .+.+..++-.|.+
T Consensus        32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~-~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~  107 (191)
T cd08760          32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLL-GDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAI  107 (191)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchh
Confidence            45568999999999987765 44444322112 1222346899999888888888888888764   2234557779999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccC
Q 048292          160 MGYTVVALSIANIFQGIIHQSH  181 (229)
Q Consensus       160 ~G~~~~~La~vni~~Gl~~~~~  181 (229)
                      +|.+++++.++|...|+.....
T Consensus       108 lGl~~~~l~~lQ~~~G~~~~~~  129 (191)
T cd08760         108 LGIIVLALAILQPLLGLLRPHP  129 (191)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999976643

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=97.08  E-value=0.0043  Score=48.70  Aligned_cols=96  Identities=18%  Similarity=0.227  Sum_probs=70.0

Q ss_pred             CCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcC----C--CCCCC
Q 048292           44 GRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGN----S--SKHYT  117 (229)
Q Consensus        44 ~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~----~--~~~~~  117 (229)
                      +++..+..|..++.++..... +|...+-..|+. .+++.....|..+-.+++++.+.-...|+....    +  .++..
T Consensus        30 ~~~~~~~~H~~lq~l~~~~~~-~G~~~~~~~~~~-~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~  107 (137)
T PF03188_consen   30 SRKWWFRIHWILQVLALVFAI-IGFVAIFINKNR-NGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIW  107 (137)
T ss_pred             ccchHHHHHHHHHHHHHHHHH-HHHHHHHHhccc-cCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHH
Confidence            456689999999999988766 555555444542 133455678999999988888877777776421    1  11223


Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhh
Q 048292          118 LKTHRILGILVFAFATIQILTSFL  141 (229)
Q Consensus       118 ~~~H~~lG~~v~~l~~lQ~l~G~~  141 (229)
                      ...|..+|.+++++...+...|+.
T Consensus       108 ~~~H~~~G~~~~~l~~~~i~~G~~  131 (137)
T PF03188_consen  108 NKWHRWLGYLIYVLAIATIFLGLT  131 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999984

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=97.06  E-value=0.0043  Score=48.63  Aligned_cols=93  Identities=18%  Similarity=0.189  Sum_probs=67.7

Q ss_pred             hhhhHhHHHHHHHHHHHHHHhHhhhcC-CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHH
Q 048292           85 HPLHMLCQISGYILGTVGWGIGLWLGN-SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYT  163 (229)
Q Consensus        85 f~~H~~lq~~a~il~i~G~~lg~~~~~-~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~  163 (229)
                      |..|..++++|+++...-.++.....+ ..+......|..+..+.+++.++-...++..+..  +.++-+.-.|.++|.+
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~--~~~~h~~s~Hs~lGl~   79 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNA--GGIANLYSLHSWLGLA   79 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccchhHHHHHHHH
Confidence            568999999998765544444433322 1222335689999999999888888888876542  2344566689999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 048292          164 VVALSIANIFQGIIHQ  179 (229)
Q Consensus       164 ~~~La~vni~~Gl~~~  179 (229)
                      +.++...|...|+...
T Consensus        80 ~~~l~~~q~~~G~~~~   95 (131)
T cd08554          80 TVLLFLLQFLSGFVLF   95 (131)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999997664

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=96.94  E-value=0.025  Score=45.58  Aligned_cols=94  Identities=15%  Similarity=0.120  Sum_probs=69.5

Q ss_pred             chhhhHhHHHHHHHHHHHHHHhHhhhcC-CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHH
Q 048292           84 WHPLHMLCQISGYILGTVGWGIGLWLGN-SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGY  162 (229)
Q Consensus        84 Wf~~H~~lq~~a~il~i~G~~lg~~~~~-~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~  162 (229)
                      -|.+|..+|++|+++...-.++.+...+ .++......|..++.+.+++.++-...-+..+.+.  ..+-+.-.|-|+|.
T Consensus         6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~~hf~SlHswlGl   83 (143)
T cd08763           6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GYPDMYSLHSWCGI   83 (143)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHH
Confidence            5899999999999977765656555322 22233356999999999988877766655544433  34556669999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 048292          163 TVVALSIANIFQGIIHQ  179 (229)
Q Consensus       163 ~~~~La~vni~~Gl~~~  179 (229)
                      .++++-..|...|+...
T Consensus        84 ~t~~L~~lQ~~~G~~~f  100 (143)
T cd08763          84 LTFVLYFLQWLIGFSFF  100 (143)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999997553

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=96.94  E-value=0.033  Score=43.50  Aligned_cols=93  Identities=18%  Similarity=0.173  Sum_probs=65.8

Q ss_pred             hhHhHHHHHHHHHH-HHHHhHhh-hcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHHH
Q 048292           87 LHMLCQISGYILGT-VGWGIGLW-LGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYTV  164 (229)
Q Consensus        87 ~H~~lq~~a~il~i-~G~~lg~~-~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~~  164 (229)
                      +|..++++++++.. .|..+.-. ....++......|..+..+.+++.++-...++..+.+.  .++.++-.|.++|.++
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~--~~~~~~s~H~~lGl~~   78 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNES--GIANFYSLHSWLGLAA   78 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCccchhHHHHHHH
Confidence            48899999986554 44433321 11112223356899999999988888888887764432  2345677899999999


Q ss_pred             HHHHHHHHHHHhhhccC
Q 048292          165 VALSIANIFQGIIHQSH  181 (229)
Q Consensus       165 ~~La~vni~~Gl~~~~~  181 (229)
                      +++...|...|+.....
T Consensus        79 ~~l~~~Q~~~G~~~~~~   95 (129)
T smart00665       79 FVLAGLQWLSGFLRPLP   95 (129)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999876643

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=96.90  E-value=0.036  Score=47.56  Aligned_cols=98  Identities=18%  Similarity=0.097  Sum_probs=67.7

Q ss_pred             CCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHH
Q 048292           81 YDEWHPLHMLCQISGYILGTVGWGIGLWLGNSS-KHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQS  159 (229)
Q Consensus        81 ~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~  159 (229)
                      +...|.+|..+|++|+++...=.++.+...+.. +......|..+..+.+++.++-...-+-.+.+..+..+-+.-.|-|
T Consensus        20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSw   99 (214)
T cd08764          20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSW   99 (214)
T ss_pred             CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH
Confidence            345799999999999977654444544433211 1222458999999999888777554443444332334445558999


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 048292          160 MGYTVVALSIANIFQGIIH  178 (229)
Q Consensus       160 ~G~~~~~La~vni~~Gl~~  178 (229)
                      +|..++++-..|...|+..
T Consensus       100 lGl~t~~L~~lQ~~~Gf~~  118 (214)
T cd08764         100 LGLTAVILFSLQWVGGFVS  118 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999733

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=96.89  E-value=0.015  Score=48.26  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=70.0

Q ss_pred             CCcchhhhHhHHHHHHHHHHHHHHhHhhhcC----CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhH
Q 048292           81 YDEWHPLHMLCQISGYILGTVGWGIGLWLGN----SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIF  156 (229)
Q Consensus        81 ~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~----~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~  156 (229)
                      ....|..|..+|.+++.+.....++.+...+    .++......|.++..+.+++.++-....+..+.+  +.++-++-.
T Consensus        17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~--~~~~hf~s~   94 (183)
T cd08761          17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKER--NGKPHFTSW   94 (183)
T ss_pred             ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCCccch
Confidence            4557899999999999877766655544211    1223335789999998888887776666554332  234566678


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 048292          157 HQSMGYTVVALSIANIFQGIIH  178 (229)
Q Consensus       157 H~~~G~~~~~La~vni~~Gl~~  178 (229)
                      |.++|..+.++...|...|+..
T Consensus        95 H~~lGl~~~~l~~~Q~~~G~~~  116 (183)
T cd08761          95 HGILGLVTVILIVLQALGGLAL  116 (183)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999854

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=96.89  E-value=0.051  Score=45.24  Aligned_cols=60  Identities=13%  Similarity=0.093  Sum_probs=45.9

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHhh-hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          116 YTLKTHRILGILVFAFATIQILTSF-LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       116 ~~~~~H~~lG~~v~~l~~lQ~l~G~-~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      ...++|-+.|+.+..++.++....- +.+.    +++.++..|..++.+++++-.++..+|....
T Consensus       112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g----~~~~~R~lHi~lN~~~l~Lf~~q~itG~~il  172 (175)
T PF13301_consen  112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKG----NRPWARRLHIYLNSLALLLFAWQAITGWRIL  172 (175)
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999998888876543 2211    2456778999999999999999999998764

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=96.72  E-value=0.078  Score=42.75  Aligned_cols=94  Identities=13%  Similarity=0.105  Sum_probs=65.1

Q ss_pred             CcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHH
Q 048292           82 DEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMG  161 (229)
Q Consensus        82 ~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G  161 (229)
                      ...|.+|..+|++|+++...=.++.+...+.++......|..+=.+.+++.++-...-+..+...  ..+-+.-.|-|+|
T Consensus         5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlG   82 (144)
T cd08766           5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLG   82 (144)
T ss_pred             cceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHH
Confidence            45799999999999876665455555543322223345888888887777766665544433322  2333455899999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 048292          162 YTVVALSIANIFQGII  177 (229)
Q Consensus       162 ~~~~~La~vni~~Gl~  177 (229)
                      .+++++-..|...|+.
T Consensus        83 l~t~~L~~lQ~~~G~~   98 (144)
T cd08766          83 IGTISLFGLQWLFGFV   98 (144)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999975

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=96.43  E-value=0.11  Score=45.17  Aligned_cols=93  Identities=14%  Similarity=0.130  Sum_probs=64.1

Q ss_pred             chhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHHH
Q 048292           84 WHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGYT  163 (229)
Q Consensus        84 Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~~  163 (229)
                      -|.+|-.+|++|+++...-.++.+...+.++......|..+=.+.+++.++-...-+-.|...  .++-+.-.|-|+|..
T Consensus        46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlHSWlGl~  123 (232)
T PLN02680         46 IFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLHSWLGLA  123 (232)
T ss_pred             eEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHHHHHHHH
Confidence            589999999999999765555555433323333355788887777777665554433333322  234455589999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 048292          164 VVALSIANIFQGIIH  178 (229)
Q Consensus       164 ~~~La~vni~~Gl~~  178 (229)
                      ++++-..|...|+..
T Consensus       124 t~iL~~lQ~~~Gf~~  138 (232)
T PLN02680        124 CLFLFSLQWAAGFVT  138 (232)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999755

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=96.25  E-value=0.57  Score=39.14  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=65.6

Q ss_pred             CcchhhhHhHHHHHHHHHHHHHHhHhhhcCC---CCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHH
Q 048292           82 DEWHPLHMLCQISGYILGTVGWGIGLWLGNS---SKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQ  158 (229)
Q Consensus        82 ~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~---~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~  158 (229)
                      ...|.+|..+|++|+++.-.=.++.+.....   ++......|..+=.+.+++.++-...-+-.|...+  .+-..-.|.
T Consensus        32 ~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~--~~nlySlHS  109 (179)
T cd08762          32 SKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHH--TANLYSLHS  109 (179)
T ss_pred             CCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--ccchhhHHH
Confidence            4479999999999998885444555543211   22223568888888888777766665554444331  222333699


Q ss_pred             HHHHHHHHHHHHHHHHHhhhc
Q 048292          159 SMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       159 ~~G~~~~~La~vni~~Gl~~~  179 (229)
                      |+|..++++-..|-..|+...
T Consensus       110 WlGl~t~~Lf~lQ~~~Gf~~f  130 (179)
T cd08762         110 WVGICTVALFTCQWVMGFTSF  130 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998554

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02810 carbon-monoxide oxygenase

Probab=95.96  E-value=0.24  Score=42.96  Aligned_cols=95  Identities=15%  Similarity=0.089  Sum_probs=67.6

Q ss_pred             CcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHH
Q 048292           82 DEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMG  161 (229)
Q Consensus        82 ~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G  161 (229)
                      +.=|.+|-.+|++|+++.-.=.++.+.....++......|..+=.+.+++.++-...-+-.|... + .+-+--.|.|+|
T Consensus        44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~-~-i~nlySLHSWlG  121 (231)
T PLN02810         44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES-G-IANLYSLHSWLG  121 (231)
T ss_pred             CceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-C-CCceeeHHHHHH
Confidence            34689999999999988876666666543323333466888888777777766655555444433 2 234445999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 048292          162 YTVVALSIANIFQGIIH  178 (229)
Q Consensus       162 ~~~~~La~vni~~Gl~~  178 (229)
                      ..++++=..|-..|+..
T Consensus       122 l~tv~Lf~lQw~~Gf~~  138 (231)
T PLN02810        122 IGIISLYGIQWIYGFIV  138 (231)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999833

>PLN02351 cytochromes b561 family protein

Probab=95.81  E-value=0.38  Score=42.02  Aligned_cols=94  Identities=21%  Similarity=0.133  Sum_probs=59.8

Q ss_pred             cchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHHHHHH
Q 048292           83 EWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQSMGY  162 (229)
Q Consensus        83 ~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~~~G~  162 (229)
                      ..|.+|-.+|++|+++...=.++.+..-+.++......|..+=.+.+++.++-...  -.|..++ ..+-+.-.|-|+|.
T Consensus        49 iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~~~-~i~nlySLHSWlGl  125 (242)
T PLN02351         49 VYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQDG-IVANFYSLHSWMGL  125 (242)
T ss_pred             eeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcccC-CccchhHHHHHHHH
Confidence            34579999999999888765566665433232223557776655555555433333  1222221 12334447999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 048292          163 TVVALSIANIFQGIIHQ  179 (229)
Q Consensus       163 ~~~~La~vni~~Gl~~~  179 (229)
                      .++++=..|-..|+...
T Consensus       126 ~tv~Lf~lQwv~Gf~~F  142 (242)
T PLN02351        126 ICVSLFGAQWLTGFMSF  142 (242)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999997554

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=95.59  E-value=0.11  Score=42.25  Aligned_cols=93  Identities=18%  Similarity=0.165  Sum_probs=63.6

Q ss_pred             hhhHhHHHHHHHHHHHHHHhHhh----hc-CCCCCCCcchhhHHHHHHHHHHHHHHHHhhhc------------------
Q 048292           86 PLHMLCQISGYILGTVGWGIGLW----LG-NSSKHYTLKTHRILGILVFAFATIQILTSFLQ------------------  142 (229)
Q Consensus        86 ~~H~~lq~~a~il~i~G~~lg~~----~~-~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~r------------------  142 (229)
                      ..|+..-++-+++.+.|+.+...    .. ..........|..+|++.+++.++..+.++.+                  
T Consensus        10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T PF00033_consen   10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR   89 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence            36776666666667777776421    11 11123346799999999999999999998887                  


Q ss_pred             cC--CCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 048292          143 PR--RENECSKWWEIFHQSMGYTVVALSIANIFQGIIH  178 (229)
Q Consensus       143 p~--~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~  178 (229)
                      ..  ++.+.++.+|...+..-.+++.+..+...+|+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~  127 (188)
T PF00033_consen   90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM  127 (188)
T ss_dssp             TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  1223445678888888899999999999999988

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=94.71  E-value=0.5  Score=36.00  Aligned_cols=89  Identities=12%  Similarity=0.163  Sum_probs=59.8

Q ss_pred             CCCcchhhhHhHHHHHHHHHH-HHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHH
Q 048292           80 EYDEWHPLHMLCQISGYILGT-VGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQ  158 (229)
Q Consensus        80 ~~~~Wf~~H~~lq~~a~il~i-~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~  158 (229)
                      +.+...+.|..+|++++++.. +|.+++...        .++|...=++-+++.++-.++|.....+. + .-+.+-.|.
T Consensus        13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~--------sr~~~~~q~~~~~l~~~g~~~g~~~~~~~-p-~lyp~n~H~   82 (105)
T PF10348_consen   13 PHRSALYAHIVLMTLAWVILYPIGLVLGNAR--------SRWHLPVQTVFLVLMILGLFLGSVYNGST-P-DLYPNNAHG   82 (105)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------chHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-CCCCCCHHH
Confidence            467789999999999887664 555554331        13565555555555555556665432211 0 134577999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 048292          159 SMGYTVVALSIANIFQGIIH  178 (229)
Q Consensus       159 ~~G~~~~~La~vni~~Gl~~  178 (229)
                      -+|+++.++.+++...|+..
T Consensus        83 k~g~il~~l~~~q~~~gv~~  102 (105)
T PF10348_consen   83 KMGWILFVLMIVQVILGVIL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999754

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=94.43  E-value=2.2  Score=34.77  Aligned_cols=96  Identities=22%  Similarity=0.127  Sum_probs=62.3

Q ss_pred             CcchhhhHhHHHHHHHHHHHHHHhHhhhcC---CCCCCCcchhhHHHHHHHHHHHHHHHHhhhccCCCCCCcchhHhHHH
Q 048292           82 DEWHPLHMLCQISGYILGTVGWGIGLWLGN---SSKHYTLKTHRILGILVFAFATIQILTSFLQPRRENECSKWWEIFHQ  158 (229)
Q Consensus        82 ~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~---~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~~~~~R~~~~~~H~  158 (229)
                      +.=|.+|-.+|++|+++.-.=.++.+....   .++......|..+=.+.+++.++-...-+-.|...  ..+-+.-.|-
T Consensus         9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHS   86 (153)
T cd08765           9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHS   86 (153)
T ss_pred             CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHH
Confidence            345899999999998885444444443211   11222345777776666666555544444333332  2345566999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhc
Q 048292          159 SMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       159 ~~G~~~~~La~vni~~Gl~~~  179 (229)
                      |+|.+++++-..|...|+...
T Consensus        87 wlGl~t~~l~~lQ~~~Gf~~f  107 (153)
T cd08765          87 WVGLAAVILYPLQLVLGISVY  107 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999997665

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=93.87  E-value=1.5  Score=35.32  Aligned_cols=131  Identities=18%  Similarity=0.191  Sum_probs=79.3

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHH---HhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhh---------------
Q 048292           48 ARTAHGILNIIGWGILLPIGVIIAR---YLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWL---------------  109 (229)
Q Consensus        48 ~~~~Hg~lM~iAw~iL~P~gil~aR---~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~---------------  109 (229)
                      .+..| +++++++.+++..|..+..   ..............+|..+..+-.++.+.=+...+..               
T Consensus         8 ~R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T PF00033_consen    8 TRLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP   86 (188)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence            34556 4778889999999987752   1111122445568899877665544444333333322               


Q ss_pred             ---c-----CCCCCCCcchhhHHHHHHHHHHHHHHHHhhhc--------cCC---CCCCcchhHhHHHHHHHHHHHHHHH
Q 048292          110 ---G-----NSSKHYTLKTHRILGILVFAFATIQILTSFLQ--------PRR---ENECSKWWEIFHQSMGYTVVALSIA  170 (229)
Q Consensus       110 ---~-----~~~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~r--------p~~---~~~~R~~~~~~H~~~G~~~~~La~v  170 (229)
                         .     .......+...+..-++++.+..++++.|+..        +..   ..........+|.+.+.++.++-.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~  166 (188)
T PF00033_consen   87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII  166 (188)
T ss_dssp             HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0     01112235678888888888999999999877        111   1123567789999999988877766


Q ss_pred             HHHHHhhhc
Q 048292          171 NIFQGIIHQ  179 (229)
Q Consensus       171 ni~~Gl~~~  179 (229)
                      =++.++...
T Consensus       167 Hi~~a~~~~  175 (188)
T PF00033_consen  167 HIYAAIFHH  175 (188)
T ss_dssp             HHHHHHHBT
T ss_pred             HHHHHHHHh
Confidence            666555443

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana

Probab=93.40  E-value=0.81  Score=34.52  Aligned_cols=48  Identities=25%  Similarity=0.311  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHhhhccCC----CCCCcchhHhHHHHHHHHHHHHHHHHH
Q 048292          124 LGILVFAFATIQILTSFLQPRR----ENECSKWWEIFHQSMGYTVVALSIANI  172 (229)
Q Consensus       124 lG~~v~~l~~lQ~l~G~~rp~~----~~~~R~~~~~~H~~~G~~~~~La~vni  172 (229)
                      +|.+.+++..++.+.+ .|+..    .+........+|+++|+.+.+++.+=.
T Consensus         1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~   52 (125)
T PF01794_consen    1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHG   52 (125)
T ss_pred             CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3777777777887777 55432    111222345599999999999988765

This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=92.93  E-value=3.1  Score=36.35  Aligned_cols=98  Identities=22%  Similarity=0.362  Sum_probs=66.5

Q ss_pred             cCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhh----cC--CCCC
Q 048292           42 SHGRHHARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWL----GN--SSKH  115 (229)
Q Consensus        42 ~~~~~~~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~----~~--~~~~  115 (229)
                      +++.+.....|..|-.+|..+-+ .|+..+--..+. .+.+--..+|-.+.+..+++-..=++.|+..    +.  +.+.
T Consensus        82 ~~~k~~~KliH~~LH~~Alvl~i-~gl~avf~~hn~-~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs  159 (245)
T KOG1619|consen   82 YTSKKVSKLIHLGLHIIALVLAI-IGLCAVFDSHNL-VGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRS  159 (245)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh-cCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHh
Confidence            45556678899999999876644 554443111111 1122335799999988888877666666653    21  1123


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHhhh
Q 048292          116 YTLKTHRILGILVFAFATIQILTSFL  141 (229)
Q Consensus       116 ~~~~~H~~lG~~v~~l~~lQ~l~G~~  141 (229)
                      ....+|..+|+.++++++.|...|+.
T Consensus       160 ~lmP~H~~~Gl~~f~lai~ta~~Gl~  185 (245)
T KOG1619|consen  160 RLMPWHVFLGLAIFILAIVTALTGLL  185 (245)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34579999999999999999999984

>COG2717 Predicted membrane protein [Function unknown]

Probab=92.17  E-value=6.9  Score=33.53  Aligned_cols=130  Identities=16%  Similarity=0.179  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhc------CCCCCCCcchhhHHHHHH
Q 048292           55 LNIIGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLG------NSSKHYTLKTHRILGILV  128 (229)
Q Consensus        55 lM~iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~------~~~~~~~~~~H~~lG~~v  128 (229)
                      ...+.+.+++=.....+|+.+     .+.+.++=+.+-+.|+..++.=+..-+...      ....+..+.+=-.+|++.
T Consensus        49 ~~al~fLl~~la~tp~~~~~~-----~~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~ia  123 (209)
T COG2717          49 IWALIFLLVTLAVTPLARLLK-----QPKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIA  123 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHH
Confidence            444555666656666667765     466777888888887777665444332211      111122234455566666


Q ss_pred             HHHHHHHHHHhh--hccCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHH
Q 048292          129 FAFATIQILTSF--LQPRRENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAILALLA  197 (229)
Q Consensus       129 ~~l~~lQ~l~G~--~rp~~~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~~~~~~~~~~~~~~~~  197 (229)
                      ++++..-.+--+  .+.    +..+.|+..|++ +|.+++||.+=...+   ...+..+.+.|.++.+...
T Consensus       124 flll~pLalTS~k~~~r----rlG~rW~~LHrL-vYl~~~L~~lH~~~s---~K~~~~~~vlY~ii~~~ll  186 (209)
T COG2717         124 FLLLIPLALTSFKWVRR----RLGKRWKKLHRL-VYLALILGALHYLWS---VKIDMPEPVLYAIIFAVLL  186 (209)
T ss_pred             HHHHHHHHHHhhHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHH
Confidence            665544433322  111    222689999995 688888887766662   1223445566666544433

>PF13172 PepSY_TM_1: PepSY-associated TM helix

Probab=91.69  E-value=0.41  Score=28.82  Aligned_cols=30  Identities=17%  Similarity=0.441  Sum_probs=25.7

Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      |+.+..+|+++|....+.-.+-+.+|+.+.
T Consensus         2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~   31 (34)
T PF13172_consen    2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN   31 (34)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677888999999999999988888887664

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=91.68  E-value=1.1  Score=37.19  Aligned_cols=79  Identities=13%  Similarity=0.142  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCcchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 048292           58 IGWGILLPIGVIIARYLRRFPIEYDEWHPLHMLCQISGYILGTVGWGIGLWLGNSSKHYTLKTHRILGILVFAFATIQIL  137 (229)
Q Consensus        58 iAw~iL~P~gil~aR~~k~~~~~~~~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~~~~~~H~~lG~~v~~l~~lQ~l  137 (229)
                      ++|+.+...|-...=+.+.    ++.+..-|...-.....+..+...+.-...++.+....+.|..++.+++++...|.+
T Consensus        91 l~~~~L~~lGG~~~~~~~~----~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~~l~Lf~~q~i  166 (175)
T PF13301_consen   91 LAFMGLGALGGQLGTYRQN----GKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSLALLLFAWQAI  166 (175)
T ss_pred             HHHHHHHHHcchHHHHHcC----CCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3466666666555544442    455556698888777777766665554443322223467999999999999999999


Q ss_pred             Hhh
Q 048292          138 TSF  140 (229)
Q Consensus       138 ~G~  140 (229)
                      .|.
T Consensus       167 tG~  169 (175)
T PF13301_consen  167 TGW  169 (175)
T ss_pred             HHH
Confidence            985

>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function

Probab=91.57  E-value=0.9  Score=34.24  Aligned_cols=31  Identities=13%  Similarity=0.125  Sum_probs=24.9

Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292          150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQS  180 (229)
Q Consensus       150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~  180 (229)
                      |+.....||++||+-..+..+....|+.+..
T Consensus         2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~   32 (103)
T PF10067_consen    2 RRKGPRLHRWLGRVYVAAMLISALSALFIAF   32 (103)
T ss_pred             CCCcccHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4556678999999999998888888887754

>PRK11513 cytochrome b561; Provisional

Probab=89.48  E-value=3.8  Score=33.85  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=24.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhccCC
Q 048292          118 LKTHRILGILVFAFATIQILTSFLQPRR  145 (229)
Q Consensus       118 ~~~H~~lG~~v~~l~~lQ~l~G~~rp~~  145 (229)
                      +..|..+|+++++++++-.+..+.++.+
T Consensus        42 ~~~H~s~G~~vl~L~v~Rl~~r~~~~~P   69 (176)
T PRK11513         42 NMIHVSCGISILVLMVVRLLLRLKYPTP   69 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4789999999999999999999986543

>COG5658 Predicted integral membrane protein [Function unknown]

Probab=89.01  E-value=5.8  Score=33.83  Aligned_cols=84  Identities=12%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHhhh-ccCC-----------CCCCcchhHhHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHH
Q 048292          125 GILVFAFATIQILTSFL-QPRR-----------ENECSKWWEIFHQSMGYTVVALSIANIFQGIIHQSHAEKWKWLYVAI  192 (229)
Q Consensus       125 G~~v~~l~~lQ~l~G~~-rp~~-----------~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~~~~~~~~~~~~~  192 (229)
                      |++.-.+.++-.++.+. +|+.           ..+.+..|+..|+++|-..++.+.+....+.......+-+...+...
T Consensus         5 ~lv~~gLvilagils~v~yp~~Pn~v~~~r~~~~~~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~~   84 (204)
T COG5658           5 GLVLAGLVILAGILSIVLYPKLPNEVVGHRTVDSSPDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALFA   84 (204)
T ss_pred             ccHHHHHHHHHHHHHHHcCCCCCccceeeecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHHH
Confidence            44444555555555543 4441           12456799999999999999999998888876665444455555554


Q ss_pred             HHHHHHHHHHHHHHHH
Q 048292          193 LALLAFLAAALEIFRW  208 (229)
Q Consensus       193 ~~~~~~v~i~lev~~w  208 (229)
                      .+++.+..+.+.+..+
T Consensus        85 ~~~Il~li~~ls~~l~  100 (204)
T COG5658          85 AVLILFLILLLSAILV  100 (204)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444433

>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently

Probab=88.45  E-value=12  Score=30.15  Aligned_cols=53  Identities=26%  Similarity=0.247  Sum_probs=27.5

Q ss_pred             hhHhHHHHHHHHHHHHHHhHhhhcCCC-CCCC--cchhhHHHHHHHHHHHHHHHHh
Q 048292           87 LHMLCQISGYILGTVGWGIGLWLGNSS-KHYT--LKTHRILGILVFAFATIQILTS  139 (229)
Q Consensus        87 ~H~~lq~~a~il~i~G~~lg~~~~~~~-~~~~--~~~H~~lG~~v~~l~~lQ~l~G  139 (229)
                      .|+..-+.-+++.+.|+.+........ ....  ...|.++|++++++.++=.+..
T Consensus         9 ~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~   64 (182)
T PF01292_consen    9 LHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWR   64 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHH
Confidence            566555555555555554432211111 1111  4578888888777766555555

This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane

>PF13706 PepSY_TM_3: PepSY-associated TM helix

Probab=88.42  E-value=0.98  Score=27.77  Aligned_cols=30  Identities=13%  Similarity=0.223  Sum_probs=23.6

Q ss_pred             cchhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 048292          150 SKWWEIFHQSMGYTVVALSIANIFQGIIHQ  179 (229)
Q Consensus       150 R~~~~~~H~~~G~~~~~La~vni~~Gl~~~  179 (229)
                      |+.+...|+|+|.++-++-.+-+.+|....
T Consensus         1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~~   30 (37)
T PF13706_consen    1 RRILRKLHRWLGLILGLLLFVIFLTGAVMV   30 (37)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            567788999999988888888888886543

>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function

Probab=88.13  E-value=3.2  Score=37.33  Aligned_cols=84  Identities=14%  Similarity=0.258  Sum_probs=54.1

Q ss_pred             HhHHHHHHHHHHHHHHhHhhhc-C-C-CCCCCcchhhHHHHHHHHHHHHHHHHhhhccCC---CCCCcchhHhHHHHHHH
Q 048292           89 MLCQISGYILGTVGWGIGLWLG-N-S-SKHYTLKTHRILGILVFAFATIQILTSFLQPRR---ENECSKWWEIFHQSMGY  162 (229)
Q Consensus        89 ~~lq~~a~il~i~G~~lg~~~~-~-~-~~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~---~~~~R~~~~~~H~~~G~  162 (229)
                      ..+..+..++.++|++-++.+- + + .+.+.---|--.|+...+-.++-...-+.|..+   ..+.|+.|.+       
T Consensus       155 ~~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~-------  227 (347)
T PF10951_consen  155 NILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPK-------  227 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHH-------
Confidence            3455577788888888777642 2 2 223334569999999988777777666766544   3355666654       


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 048292          163 TVVALSIANIFQGIIHQ  179 (229)
Q Consensus       163 ~~~~La~vni~~Gl~~~  179 (229)
                      .++++|-+++..|+...
T Consensus       228 lVl~mGsi~~l~Gl~vl  244 (347)
T PF10951_consen  228 LVLVMGSISILWGLYVL  244 (347)
T ss_pred             HHHHHhhHHHHhhhheE
Confidence            45566666666666554

>COG3038 CybB Cytochrome B561 [Energy production and conversion]

Probab=87.13  E-value=13  Score=31.03  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=38.1

Q ss_pred             HhHHHHHHHHHHHHHHhHhhhcCCC-----CCCCcchhhHHHHHHHHHHHHHHHHhhhccCC
Q 048292           89 MLCQISGYILGTVGWGIGLWLGNSS-----KHYTLKTHRILGILVFAFATIQILTSFLQPRR  145 (229)
Q Consensus        89 ~~lq~~a~il~i~G~~lg~~~~~~~-----~~~~~~~H~~lG~~v~~l~~lQ~l~G~~rp~~  145 (229)
                      +.+..+..++.++.+++|..+.+.+     +....+.|..+|+.+++++++-.+..+..|.+
T Consensus        13 i~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p   74 (181)
T COG3038          13 IALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLRNPAP   74 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3333344455555556665543222     12346899999999999999999999886654

>PRK05771 V-type ATP synthase subunit I; Validated

Probab=84.75  E-value=27  Score=34.60  Aligned_cols=93  Identities=18%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             cchhhhHhHHHHHHHHHHHHHHhHhhhcCCCCC--------------CC---cchhhHHHHHHHHHHHHHHHHhhhccCC
Q 048292           83 EWHPLHMLCQISGYILGTVGWGIGLWLGNSSKH--------------YT---LKTHRILGILVFAFATIQILTSFLQPRR  145 (229)
Q Consensus        83 ~Wf~~H~~lq~~a~il~i~G~~lg~~~~~~~~~--------------~~---~~~H~~lG~~v~~l~~lQ~l~G~~rp~~  145 (229)
                      ...+.-..+..+++..++.|+..|-..+.....              ..   +++=..+.+ .+++.++|..+|....-.
T Consensus       388 ~~~~~~~il~~~gi~sii~G~lyG~fFG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-sl~iGvi~i~~g~~l~~~  466 (646)
T PRK05771        388 GLKRLLKILIYLGISTIIWGLLTGSFFGFSLPIFLPGGYLELPEGYPSLSTENDVMTILII-SLLIGVIHLFLGLLLGFI  466 (646)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcCccccccccccccccCCccccCCCccHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            345566666777777777777666554421110              01   111122332 233567888877642111


Q ss_pred             -CCCCcchhHhHHHHHHHHHHHHHHHHHHHHh
Q 048292          146 -ENECSKWWEIFHQSMGYTVVALSIANIFQGI  176 (229)
Q Consensus       146 -~~~~R~~~~~~H~~~G~~~~~La~vni~~Gl  176 (229)
                       .-+.+...+-+-..+|+.++++|.+-..++.
T Consensus       467 ~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~  498 (646)
T PRK05771        467 NNVRKGDYKDAFLAQLGWLLILLGILLIVLGG  498 (646)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             1012223333444577777777777666654

>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently

Probab=84.17  E-value=20  Score=28.74  Aligned_cols=50  Identities=20%  Similarity=0.144  Sum_probs=26.8

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcc--hhhhHhHHHHHHHHH
Q 048292           48 ARTAHGILNIIGWGILLPIGVIIARYLRRFPIEYDEW--HPLHMLCQISGYILG   99 (229)
Q Consensus        48 ~~~~Hg~lM~iAw~iL~P~gil~aR~~k~~~~~~~~W--f~~H~~lq~~a~il~   99 (229)
                      .+..| +++++++.+++..|.....-.+.. .....+  ..+|..+..+-..+.
T Consensus         6 ~r~~H-W~~a~~~i~l~~tG~~~~~~~~~~-~~~~~~~~~~~H~~~G~~~~~~~   57 (182)
T PF01292_consen    6 TRILH-WLNALSFIALIATGLWIHFPPPGL-YFGDFGGVRNWHVIAGLLLFALL   57 (182)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHhcccccc-cccccchHHhHHHHHHHHHHHHH
Confidence            34556 456777888888887653222211 111222  678988555443333

This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane

>PF13703 PepSY_TM_2: PepSY-associated TM helix

Probab=83.99  E-value=7.6  Score=28.12  Aligned_cols=30  Identities=13%  Similarity=0.385  Sum_probs=23.6

Q ss_pred             CCcchhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 048292          148 ECSKWWEIFHQSMGYTVVALSIANIFQGIIH  178 (229)
Q Consensus       148 ~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~  178 (229)
                      +.|+ +.-.|+.+|....+.-.+-+.+|+..
T Consensus        56 ~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~   85 (88)
T PF13703_consen   56 SKRR-WFDLHRVLGLWFLPFLLVIALTGLFF   85 (88)
T ss_pred             ccCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455 66699999999998888888888765

>PF13630 SdpI: SdpI/YhfL protein family

Probab=83.08  E-value=3.7  Score=28.54  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=28.5

Q ss_pred             CCcchhHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292          148 ECSKWWEIFHQSMGYTVVALSIANIFQGIIHQS  180 (229)
Q Consensus       148 ~~R~~~~~~H~~~G~~~~~La~vni~~Gl~~~~  180 (229)
                      +....|+..|+..|...++.|++.+..|+....
T Consensus        18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~   50 (76)
T PF13630_consen   18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILF   50 (76)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999999888887664

>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed

Probab=80.62  E-value=34  Score=29.00  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=16.4

Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHHH
Q 048292          151 KWWEIFHQSMGYTVVALSIANIFQG  175 (229)
Q Consensus       151 ~~~~~~H~~~G~~~~~La~vni~~G  175 (229)
                      +.|+..|+. .+.+.+++.+=.+..
T Consensus       144 ~~Wk~LH~l-~Y~a~~L~~~H~~~~  167 (205)
T PRK05419        144 KRWQKLHRL-VYLIAILAPLHYLWS  167 (205)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            379999998 555566776665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
1kqf_C	217	FDH-N gamma, formate dehydrogenase, nitrate-induci	86.3
4gd3_A	235	NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-	85.01

>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*

Probab=86.30  E-value=2.4  Score=34.39  Aligned_cols=29  Identities=10%  Similarity=0.208  Sum_probs=22.1

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 048292          152 WWEIFHQSMGYTVVALSIANIFQGIIHQS  180 (229)
Q Consensus       152 ~~~~~H~~~G~~~~~La~vni~~Gl~~~~  180 (229)
                      .+|...+..=.+++++..+.+.+|+.+..
T Consensus       108 ~~n~~~~~~~~~l~~l~~~~~~TG~~~~~  136 (217)
T 1kqf_C          108 KYNAGQKMMFWSIMSMIFVLLVTGVIIWR  136 (217)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777667778888888999987764

>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}

Probab=85.01  E-value=4.5  Score=33.32  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=16.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhh
Q 048292          120 THRILGILVFAFATIQILTSFL  141 (229)
Q Consensus       120 ~H~~lG~~v~~l~~lQ~l~G~~  141 (229)
                      .|..+|++++++.++-.+.++.
T Consensus        62 ~H~~~G~~~~~l~~~Rl~w~~~   83 (235)
T 4gd3_A           62 IHFSAGMVFTVVLLMRIYWAFV   83 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6888888887777777776665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00