Citrus Sinensis ID: 048299

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MLGSLNNTTSSRHDQQQEEDPLAAAASSSDLMLQHHQPLHQSHHQYSSSSSSSRVGGLMNSPPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHANATLLMMNITTTTTATTLPYNTTTYNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH
ccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccEEEEEccEEEEEEcccEEEEEEccc
ccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHccccHHHcccccccEEEEEHHHHHHHccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEEcccEEEEcccccEEEEEEccc
mlgslnnttssrhdqqqeedplaaaasssdlmlqhhqplhqshhqysssssssrvgglmnsppaiHMRQLLISCAELFSQADFSAAHRLISILsansspygdSIERLVHQFIRALSLRLNLHHANATLLMMNITTtttattlpyntttyndrnALQSCYLSlnqitpfirfsHLTANQAILESLQVGqqsihildfdimhgvqwpPLMQALVERFknsnmlqpppmlritgtgnDIEILQRTGERLLKFAQSLglrfqfhplllmnddptsvafylpsaltilpdetLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEreashnhpLFLQRFVEAVDHYGAIFdsleatlppnsrerLAVEQVWFGREIVEIVATEgenrkerherFDSWEMILRScgysnvplsgyALSQAKLLLRlhypsegyqlQVLNNSLFLGWQNRALFSVSSWH
mlgslnnttssrhdqqQEEDPLAAAASSSDLMLQHHQPLHQSHHQYSSSSSSSRVGGLMNSPPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHANATLLMMNITTTTTATTLPYNTTTYNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSleatlppnsrERLAVEQVWFGREIVEivategenrkerherfdsWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH
MLGSLNNTTSSRHDQQQEEDPLaaaasssDLMLqhhqplhqshhqysssssssRVGGLMNSPPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHAnatllmmnitttttattlpyntttynDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH
***************************************************************AIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHANATLLMMN****************YNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEG******HERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSV****
********************************************************************QLLISCAELFSQADFSAAHRLISILSANSSP*GDSIERLVHQFIRALSLRLNLHHANATLLM****************TTYNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVE*******LQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH
****************************SDLMLQH**********************LMNSPPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHANATLLMMNITTTTTATTLPYNTTTYNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH
******************************************************VGGLMNSPPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHANATLLMMNIT**************YNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH
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MLGSLNNTTSSRHDQQQEEDPLAAAASSSDLMLQHHQPLHQSHHQYSSSSSSSRVGGLMNSPPAIHMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHANATLLMMNITTTTTATTLPYNTTTYNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query459 2.2.26 [Sep-21-2011]
Q9ZWC5445 Scarecrow-like protein 18 yes no 0.847 0.874 0.559 1e-112
Q84MM9441 Protein MONOCULM 1 OS=Ory yes no 0.755 0.786 0.448 3e-73
Q2Z2E9783 Protein SCARECROW OS=Ipom N/A no 0.769 0.450 0.361 2e-55
Q9M384653 Protein SCARECROW OS=Arab no no 0.769 0.540 0.366 1e-54
Q9AVK4819 Protein SCARECROW OS=Pisu N/A no 0.766 0.429 0.361 1e-54
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.827 0.694 0.311 1e-54
Q84TQ7537 DELLA protein GAI OS=Goss N/A no 0.773 0.661 0.322 3e-53
Q9C8Y3511 DELLA protein RGL1 OS=Ara no no 0.812 0.729 0.309 3e-52
Q7Y1B6588 DELLA protein GAI OS=Sola N/A no 0.782 0.610 0.306 5e-52
Q9ST48630 DELLA protein DWARF8 OS=Z N/A no 0.777 0.566 0.311 2e-51
>sp|Q9ZWC5|SCL18_ARATH Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1 Back     alignment and function desciption
 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/409 (55%), Positives = 287/409 (70%), Gaps = 20/409 (4%)

Query: 66  HMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHAN 125
           H+R+LL + A   SQ++F+AA  L+SILS NSSP+GDS ERLVH F +ALS+R+N    +
Sbjct: 40  HLRRLLFTAANFVSQSNFTAAQNLLSILSLNSSPHGDSTERLVHLFTKALSVRINRQQQD 99

Query: 126 ATLLMMNITTTTTATTLPYNTT-------------TYNDRNALQSCY-LSLNQITPFIRF 171
            T   +  T TT   T+  +T              T N+ +  +SCY L LNQ+TPFIRF
Sbjct: 100 QTAETV-ATWTTNEMTMSNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRF 158

Query: 172 SHLTANQAILESLQVGQQ-SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRIT 230
            HLTANQAIL++ +     ++HILD DI  G+QWPPLMQAL ER  +SN   PPP LRIT
Sbjct: 159 GHLTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAER--SSNPSSPPPSLRIT 216

Query: 231 GTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDD-PTSVAFYLPSALTILPDETLA 289
           G G D+  L RTG+RL +FA SLGL+FQFH L+++ +D    +      AL+ +  ET+A
Sbjct: 217 GCGRDVTGLNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIA 276

Query: 290 VNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYG 349
           VNC+ FLHK+  D D   +  FL  IK+LN R+VT+AEREA+H    FL RF EAVDHY 
Sbjct: 277 VNCVHFLHKIFND-DGDMIGHFLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYM 335

Query: 350 AIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYS 409
           AIFDSLEATLPPNSRERL +EQ WFG+EI+++VA E   RK+RH RF+ WE +++  G+ 
Sbjct: 336 AIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEETERKQRHRRFEIWEEMMKRFGFV 395

Query: 410 NVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
           NVP+  +ALSQAKLLLRLHYPSEGY LQ LNNSLFLGWQNR LFSVSSW
Sbjct: 396 NVPIGSFALSQAKLLLRLHYPSEGYNLQFLNNSLFLGWQNRPLFSVSSW 444
Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84MM9|MOC_ORYSJ Protein MONOCULM 1 OS=Oryza sativa subsp. japonica GN=MOC1 PE=2 SV=1 Back     alignment and function description
>sp|Q2Z2E9|SCR_IPONI Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1 Back     alignment and function description
>sp|Q9M384|SCR_ARATH Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1 Back     alignment and function description
>sp|Q9AVK4|SCR_PEA Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q84TQ7|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function description
>sp|Q7Y1B6|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q9ST48|DWRF8_MAIZE DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
383866667449 GRAS family protein, partial [Dimocarpus 0.938 0.959 0.7 0.0
224120900435 GRAS family transcription factor LATERAL 0.858 0.905 0.718 1e-170
225463546413 PREDICTED: scarecrow-like protein 18 [Vi 0.836 0.929 0.746 1e-164
224061677438 GRAS family transcription factor LATERAL 0.845 0.885 0.674 1e-163
224132686434 GRAS family transcription factor LATERAL 0.856 0.905 0.703 1e-161
197130963407 lateral suppressor protein [Nicotiana ta 0.825 0.931 0.659 1e-151
350535156428 lateral suppressor protein [Solanum lyco 0.821 0.880 0.651 1e-148
51890849431 lateral suppressor-like protein [Daucus 0.838 0.893 0.615 1e-142
147768236377 hypothetical protein VITISV_015992 [Viti 0.795 0.968 0.621 1e-138
449460513388 PREDICTED: scarecrow-like protein 18-lik 0.793 0.938 0.625 1e-128
>gi|383866667|gb|AFH54535.1| GRAS family protein, partial [Dimocarpus longan] Back     alignment and taxonomy information
 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/470 (70%), Positives = 381/470 (81%), Gaps = 39/470 (8%)

Query: 7   NTTSSRHDQQQEEDPLAAAASSSDLMLQHHQPLHQSHHQYSSSSSSSRVGGLMNSPPAIH 66
           NTTS    +Q EE+P    +S++DL             QY   +  S   GL +   AI 
Sbjct: 2   NTTSGH--EQDEEEP----SSATDL-------------QYQQITQPSHSRGLNSPAAAIQ 42

Query: 67  MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHH--- 123
           MRQLLISCAEL SQ+DFSAA RLISILSANSSPYGDS ERL+HQF+RALSLRLN HH   
Sbjct: 43  MRQLLISCAELVSQSDFSAADRLISILSANSSPYGDSTERLIHQFVRALSLRLNRHHHLH 102

Query: 124 ANATLLMMNITTTTTATTLPY--------------NTTTYNDRNALQSCYLSLNQITPFI 169
           A+AT  MMN+ TT  ATT                 N    ND +ALQ+CYLSLNQITPFI
Sbjct: 103 ASATGFMMNLITTNIATTSINTTSSSTTPSISASANYIISNDLSALQTCYLSLNQITPFI 162

Query: 170 RFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRI 229
           RFSHLTANQAILE++QVGQQSIHILDFDIMHGVQWPPLMQAL ER  ++N L PPPMLRI
Sbjct: 163 RFSHLTANQAILEAIQVGQQSIHILDFDIMHGVQWPPLMQALAER--SNNTLHPPPMLRI 220

Query: 230 TGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLA 289
           TGTG+D++IL RTG+RL  FAQSLGLRFQFHPLLL+NDDPTSVA YL SAL++LPDE LA
Sbjct: 221 TGTGHDLDILHRTGDRLFMFAQSLGLRFQFHPLLLLNDDPTSVAVYLSSALSLLPDEALA 280

Query: 290 VNCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYG 349
           VNC+L+LH+L+K+ D+RDLRLFLHKIK+LNP VVTIAEREA+HNHP+F++RFVEA+DHY 
Sbjct: 281 VNCVLYLHRLVKE-DSRDLRLFLHKIKSLNPAVVTIAEREANHNHPVFMRRFVEALDHYS 339

Query: 350 AIFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYS 409
           AI++SLEATLPPNS+ERLAVEQ+WFGREI++IV  EGENR+ERHER +SWE++LRS G++
Sbjct: 340 AIYESLEATLPPNSKERLAVEQIWFGREIMDIVGAEGENRRERHERLESWEVMLRSSGFA 399

Query: 410 NVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH 459
           NVPLS +ALSQAKLLLRLHYPSEGYQ+Q+LNNS FLGWQNRALFSVSSWH
Sbjct: 400 NVPLSPFALSQAKLLLRLHYPSEGYQIQILNNSFFLGWQNRALFSVSSWH 449

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224120900|ref|XP_002318447.1| GRAS family transcription factor LATERAL [Populus trichocarpa] gi|222859120|gb|EEE96667.1| GRAS family transcription factor LATERAL [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225463546|ref|XP_002265645.1| PREDICTED: scarecrow-like protein 18 [Vitis vinifera] gi|296090051|emb|CBI39870.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061677|ref|XP_002300599.1| GRAS family transcription factor LATERAL [Populus trichocarpa] gi|222847857|gb|EEE85404.1| GRAS family transcription factor LATERAL [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224132686|ref|XP_002321384.1| GRAS family transcription factor LATERAL [Populus trichocarpa] gi|222868380|gb|EEF05511.1| GRAS family transcription factor LATERAL [Populus trichocarpa] Back     alignment and taxonomy information
>gi|197130963|gb|ACH47034.1| lateral suppressor protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|350535156|ref|NP_001234179.1| lateral suppressor protein [Solanum lycopersicum] gi|4160441|gb|AAD05242.1| lateral suppressor protein [Solanum lycopersicum] gi|13620224|emb|CAC36399.1| lateral suppressor [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|51890849|dbj|BAD42666.1| lateral suppressor-like protein [Daucus carota] Back     alignment and taxonomy information
>gi|147768236|emb|CAN64763.1| hypothetical protein VITISV_015992 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449460513|ref|XP_004147990.1| PREDICTED: scarecrow-like protein 18-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
TAIR|locus:2020487445 LAS "AT1G55580" [Arabidopsis t 0.849 0.876 0.544 9e-109
UNIPROTKB|Q84MM9441 MOC1 "Protein MONOCULM 1" [Ory 0.795 0.827 0.463 1.2e-74
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.599 0.502 0.371 8.7e-53
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.320 0.304 0.385 9.2e-51
TAIR|locus:2015243658 AT1G63100 "AT1G63100" [Arabido 0.618 0.431 0.355 1.4e-50
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.601 0.527 0.375 4.7e-50
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.625 0.491 0.392 9.8e-50
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.599 0.468 0.352 4.7e-48
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.629 0.542 0.329 1.6e-47
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.610 0.571 0.351 5.3e-47
TAIR|locus:2020487 LAS "AT1G55580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 222/408 (54%), Positives = 277/408 (67%)

Query:    66 HMRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHAX 125
             H+R+LL + A   SQ++F+AA  L+SILS NSSP+GDS ERLVH F +ALS+R+N     
Sbjct:    40 HLRRLLFTAANFVSQSNFTAAQNLLSILSLNSSPHGDSTERLVHLFTKALSVRINRQQQD 99

Query:   126 XXXXXXXXXXXXXXXXXXXXXXXXX-----------DRNA-LQSCY-LSLNQITPFIRFS 172
                                                 + N+  +SCY L LNQ+TPFIRF 
Sbjct:   100 QTAETVATWTTNEMTMSNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRFG 159

Query:   173 HLTANQAILESLQVGQQ-SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITG 231
             HLTANQAIL++ +     ++HILD DI  G+QWPPLMQAL ER  +SN   PPP LRITG
Sbjct:   160 HLTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAER--SSNPSSPPPSLRITG 217

Query:   232 TGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPS-ALTILPDETLAV 290
              G D+  L RTG+RL +FA SLGL+FQFH L+++ +D   +   +   AL+ +  ET+AV
Sbjct:   218 CGRDVTGLNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAV 277

Query:   291 NCMLFLHKLLKDHDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGA 350
             NC+ FLHK+  D D   +  FL  IK+LN R+VT+AEREA+H    FL RF EAVDHY A
Sbjct:   278 NCVHFLHKIFND-DGDMIGHFLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMA 336

Query:   351 IFDSLEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSN 410
             IFDSLEATLPPNSRERL +EQ WFG+EI+++VA E   RK+RH RF+ WE +++  G+ N
Sbjct:   337 IFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEETERKQRHRRFEIWEEMMKRFGFVN 396

Query:   411 VPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
             VP+  +ALSQAKLLLRLHYPSEGY LQ LNNSLFLGWQNR LFSVSSW
Sbjct:   397 VPIGSFALSQAKLLLRLHYPSEGYNLQFLNNSLFLGWQNRPLFSVSSW 444
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0010223 "secondary shoot formation" evidence=IMP
UNIPROTKB|Q84MM9 MOC1 "Protein MONOCULM 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015243 AT1G63100 "AT1G63100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZWC5SCL18_ARATHNo assigned EC number0.55990.84740.8741yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GRAS45
GRAS family transcription factor LATERAL (398 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-147
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  425 bits (1094), Expect = e-147
 Identities = 169/396 (42%), Positives = 242/396 (61%), Gaps = 29/396 (7%)

Query: 67  MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHANA 126
           +  LL++CAE  S  D S A  +++ L+  +SP GD ++RL   F  AL+ RL       
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLAR----- 55

Query: 127 TLLMMNITTTTTATTLPYNTTTYNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQV 186
                  + ++  + LP + +T +D   + + Y    +++P+++F H TANQAILE+ + 
Sbjct: 56  -------SGSSIYSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFE- 107

Query: 187 GQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGN----DIEILQRT 242
           G++ +HI+DFDI  G+QWP L+QAL  R         PP LRITG G+      E L+ T
Sbjct: 108 GEERVHIIDFDIGQGLQWPSLIQALASRPG------GPPHLRITGIGSPQFSSAEELEET 161

Query: 243 GERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKD 302
           G+RL +FA SLG+ F+F+PL+    +           L + P E LAVNC+  LH+LL +
Sbjct: 162 GDRLAQFADSLGVPFEFNPLVAKRLEDLD-----LEMLDVRPGEALAVNCVFALHRLLDE 216

Query: 303 HDTRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPN 362
             + +   FL  +K+LNP+VVT+ E+EA+HN   FL RFVEA+ +Y A+FDSLEATLP +
Sbjct: 217 SVSLESPTFLRLVKSLNPKVVTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRD 276

Query: 363 SRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAK 422
           S ER  VE+   GREIV +VA EG  R ERHE F  W   +R  G+  VPLS +A+ QAK
Sbjct: 277 SEERRKVERELLGREIVNVVACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAK 336

Query: 423 LLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSW 458
           LLLRL+Y  +GY+++  N SL LGW+ R L + S+W
Sbjct: 337 LLLRLYY-VDGYRVEEDNGSLVLGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 459
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.65
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.85
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 96.36
PLN02233261 ubiquinone biosynthesis methyltransferase 96.03
PRK06202232 hypothetical protein; Provisional 95.65
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 95.47
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 94.55
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 93.18
PRK08317241 hypothetical protein; Provisional 93.04
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 92.5
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 92.2
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 91.82
PLN02336475 phosphoethanolamine N-methyltransferase 91.65
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 91.65
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 91.58
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 91.2
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 90.21
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 89.49
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 89.37
PLN02585315 magnesium protoporphyrin IX methyltransferase 88.51
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 88.4
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 88.38
PRK11207197 tellurite resistance protein TehB; Provisional 88.32
TIGR03438301 probable methyltransferase. This model represents 88.21
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 87.96
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 87.57
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 87.54
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 86.52
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 85.82
PLN02336 475 phosphoethanolamine N-methyltransferase 85.66
PRK11873272 arsM arsenite S-adenosylmethyltransferase; Reviewe 84.73
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 84.66
COG4106257 Tam Trans-aconitate methyltransferase [General fun 84.42
TIGR03439319 methyl_EasF probable methyltransferase domain, Eas 84.35
PRK12335287 tellurite resistance protein TehB; Provisional 84.01
PRK09489342 rsmC 16S ribosomal RNA m2G1207 methyltransferase; 82.48
PRK05785226 hypothetical protein; Provisional 82.19
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 80.51
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-112  Score=878.79  Aligned_cols=368  Identities=46%  Similarity=0.796  Sum_probs=343.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHHhhhccCCchhhhhhhhcccccccCCCCCC
Q 048299           67 MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHHANATLLMMNITTTTTATTLPYNT  146 (459)
Q Consensus        67 L~~lLl~cAeAV~~gd~~~A~~lL~~L~~~aSp~Gd~~qRlA~yFaeAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (459)
                      |++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+.+++.|. .+.           +..
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~-~~~-----------~~~   68 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYS-ALP-----------PSS   68 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCccccc-CCC-----------Ccc
Confidence            68999999999999999999999999999999999999999999999999999998888761 110           000


Q ss_pred             CcCCChHHHHHHHHHhhccCCCcchhhHhHHHHHHHHhhhCCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCe
Q 048299          147 TTYNDRNALQSCYLSLNQITPFIRFSHLTANQAILESLQVGQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPM  226 (459)
Q Consensus       147 ~~~~~~~~~~~a~~~f~~~~P~~kfa~ftaNqAILEA~~g~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~  226 (459)
                      .......+...+|+.||++|||+||||||||||||||++|++ +||||||||++|+|||+|||+||.|++      |||+
T Consensus        69 ~~~~~~~~~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~-~vHIID~~i~~G~QW~~LiqaLa~R~~------gpp~  141 (374)
T PF03514_consen   69 PSPSESSEQLAAYQLFYELSPFLKFAHFTANQAILEAFEGER-RVHIIDFGIGFGVQWPSLIQALASRPG------GPPS  141 (374)
T ss_pred             ccccchHHHHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCc-ceEEEeccCCcchHHHHHHHHHhcCCC------CCCe
Confidence            000125678899999999999999999999999999999998 999999999999999999999999999      9999


Q ss_pred             EEEeEecC----CHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccC
Q 048299          227 LRITGTGN----DIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKD  302 (459)
Q Consensus       227 LRIT~i~~----~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~  302 (459)
                      ||||||++    +.+.+++||++|.+||+++||||||++|+.+++|+++     +++|++++||+|||||+++||||+++
T Consensus       142 LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~-----~~~l~~~~~E~laVn~~~~Lh~l~~~  216 (374)
T PF03514_consen  142 LRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLD-----PSMLRLRPGEALAVNCMFQLHHLLDE  216 (374)
T ss_pred             EEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCC-----HHHhCccCCcEEEEEeehhhhhhccc
Confidence            99999998    6889999999999999999999999998888999988     46899999999999999999999854


Q ss_pred             CC--ChhHHHHHHHHHhcCCCeEEEEecCCCCCCcchHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhHhHHH
Q 048299          303 HD--TRDLRLFLHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFDSLEATLPPNSRERLAVEQVWFGREIVE  380 (459)
Q Consensus       303 ~~--~~~~~~~L~~ir~L~P~iv~~~E~ea~~n~~~F~~RF~eaL~~YsalFDsLea~l~~~~~eR~~iE~~~lg~eI~n  380 (459)
                      ..  .++++.||+.||+|+|+|||++|+|+|||+|+|++||.|||+||+|+|||||+++|+++++|..+|+.+||+||+|
T Consensus       217 ~~~~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~n  296 (374)
T PF03514_consen  217 SGALENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMN  296 (374)
T ss_pred             cccccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHH
Confidence            21  2479999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccccccchhHHHHHHHhCCCccccCChHHHHHHHHHHhhcCCCCCcEEEEeCCEEEEEECCceeEEEeecC
Q 048299          381 IVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYPSEGYQLQVLNNSLFLGWQNRALFSVSSWH  459 (459)
Q Consensus       381 iVA~eG~~R~eR~E~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~~gy~v~~~~~~L~LgWk~~pL~~~SaWr  459 (459)
                      ||||||.+|+||||++++|+.||.+|||+++|+|++++.||+.||+. |+++||+|++++|||+|||||+||+++||||
T Consensus       297 iVa~eg~~R~eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~-~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  297 IVACEGEERVERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRK-FPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             hhhcccccccccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhc-cCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            99999999999999999999999999999999999999999999999 5478999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] Back     alignment and domain information
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 68.3 bits (166), Expect = 2e-12
 Identities = 79/521 (15%), Positives = 139/521 (26%), Gaps = 177/521 (33%)

Query: 67  MRQLLIS--CAELFSQAD-FSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLHH 123
            + +L       +    D  S   RL   L +         E +V +F+        +  
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-------EEMVQKFVE------EVLR 88

Query: 124 ANATLLMMNITTTTTATTLPYNTTTYND-RNALQSCYLSLNQITPFI-----RFSHLTAN 177
            N   LM  I T     ++   T  Y + R+ L       N    F      R       
Sbjct: 89  INYKFLMSPIKTEQRQPSMM--TRMYIEQRDRLY------NDNQVFAKYNVSRLQPYLKL 140

Query: 178 QAILESLQVGQQ-SIH--------------ILDFDIMH----GVQW------------PP 206
           +  L  L+  +   I                L + +       + W              
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 207 LMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHP--LLL 264
           ++Q L+ +   +   +      I    + I+        L +      L+ + +   LL+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ------AELRRL-----LKSKPYENCLLV 249

Query: 265 MND--DPTSV-AFYLPSALTIL-----PDETLAVNCMLFLHKLLKDHD---TRD--LRLF 311
           + +  +  +  AF L     IL        T  ++     H  L  H    T D    L 
Sbjct: 250 LLNVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 312 LHKIKALNPRVVTIAEREASHNHPLFLQRFVEAVDHYGAIFD----------------SL 355
           L   K L+ R   +  RE    +P  L    E++    A +D                SL
Sbjct: 308 L---KYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 356 EATLPPNSRER---LAV--------EQV----WFG--REIVEIVATE------------- 385
               P   R+    L+V          +    WF   +  V +V  +             
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 386 ---------------GENRKERHERF-DSWEMILRSCGYSNVPLS---------GYALSQ 420
                           EN    H    D + +         +P           G+ L  
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 421 AKLLLRLHYPSEGYQLQVLNNSLFL--GW-QNRALFSVSSW 458
                      E  +   L   +FL   + + +     ++W
Sbjct: 484 I----------EHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.75
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 96.34
3dh0_A219 SAM dependent methyltransferase; cystal structure, 96.2
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.03
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.79
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.71
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 95.59
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 95.53
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 95.46
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.44
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 95.34
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 95.24
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 95.24
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 95.17
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 95.03
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 94.87
2r3s_A335 Uncharacterized protein; methyltransferase domain, 94.35
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 94.29
3f4k_A257 Putative methyltransferase; structural genomics, P 94.14
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 93.9
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 93.89
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 93.69
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 93.57
3hnr_A220 Probable methyltransferase BT9727_4108; structural 93.44
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 93.4
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 93.3
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 93.3
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.2
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 93.15
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 93.04
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 93.02
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 92.73
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 92.37
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 91.88
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 91.85
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 91.07
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 90.72
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 90.54
3m70_A286 Tellurite resistance protein TEHB homolog; structu 90.44
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 90.22
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 89.62
3ocj_A305 Putative exported protein; structural genomics, PS 89.51
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 88.89
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 88.17
3giw_A277 Protein of unknown function DUF574; rossmann-fold 87.66
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 87.03
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 86.66
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 86.58
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 86.5
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 86.15
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 86.0
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 85.93
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 85.75
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 85.74
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 84.84
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 84.53
4dcm_A375 Ribosomal RNA large subunit methyltransferase G; 2 84.53
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 84.14
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 84.12
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 84.09
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 83.86
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 83.71
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 83.65
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 82.99
1wzn_A252 SAM-dependent methyltransferase; structural genomi 82.89
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 82.56
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 81.97
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 81.84
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 81.65
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 81.32
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 81.22
3iv6_A261 Putative Zn-dependent alcohol dehydrogenase; alpha 81.0
3g07_A292 7SK snRNA methylphosphate capping enzyme; structur 80.42
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 80.21
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.75  E-value=0.00035  Score=67.61  Aligned_cols=169  Identities=13%  Similarity=0.164  Sum_probs=95.7

Q ss_pred             eEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCCCC
Q 048299          190 SIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEILQRTGERLLKFAQSLGLRFQFHPLLLMNDDP  269 (459)
Q Consensus       190 ~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l~etg~rL~~fA~~lgvpFeF~~v~~~~~e~  269 (459)
                      .-+|+|+|.|.|.    +...|+.+-       +.|..+||||+.+.+.++.+.+++.++.  ...+.+|.  .. +..+
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-------~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~--~~-D~~~  134 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-------HHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVI--EG-DIRD  134 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-------CSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEE--ES-CTTT
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-------CCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEe--ec-cccc
Confidence            4579999999984    556666654       4678999999999999988887765432  23345554  22 2222


Q ss_pred             CccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-HhcCCCe-EEEEecCCCCCCcchHHHHHHHHHH
Q 048299          270 TSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KALNPRV-VTIAEREASHNHPLFLQRFVEAVDH  347 (459)
Q Consensus       270 ~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L~P~i-v~~~E~ea~~n~~~F~~RF~eaL~~  347 (459)
                      +.          ..+-.+++.|  +.||++..    ..+..+|+.| +.|+|.- +++.|.-... .+.+...+.+....
T Consensus       135 ~~----------~~~~d~v~~~--~~l~~~~~----~~~~~~l~~i~~~LkpGG~lii~e~~~~~-~~~~~~~~~~~~~~  197 (261)
T 4gek_A          135 IA----------IENASMVVLN--FTLQFLEP----SERQALLDKIYQGLNPGGALVLSEKFSFE-DAKVGELLFNMHHD  197 (261)
T ss_dssp             CC----------CCSEEEEEEE--SCGGGSCH----HHHHHHHHHHHHHEEEEEEEEEEEEBCCS-SHHHHHHHHHHHHH
T ss_pred             cc----------ccccccceee--eeeeecCc----hhHhHHHHHHHHHcCCCcEEEEEeccCCC-CHHHHHHHHHHHHH
Confidence            22          2222444444  45788843    2567788887 5799985 5666764432 23333322221111


Q ss_pred             HHHHHHhhhhcCCCC-cHHHHHHHHHHHhHhHHHHHhhcCCCccccccchhHHHHHHHhCCCccccC
Q 048299          348 YGAIFDSLEATLPPN-SRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPL  413 (459)
Q Consensus       348 YsalFDsLea~l~~~-~~eR~~iE~~~lg~eI~niVA~eG~~R~eR~E~~~~W~~r~~~aGF~~~~l  413 (459)
                      |. ......   +.. ...|..+|                  ++-++.+.+.++.+|+.|||+.+.+
T Consensus       198 ~~-~~~g~s---~~ei~~~~~~l~------------------~~~~~~s~~~~~~~L~~AGF~~ve~  242 (261)
T 4gek_A          198 FK-RANGYS---ELEISQKRSMLE------------------NVMLTDSVETHKARLHKAGFEHSEL  242 (261)
T ss_dssp             HH-HHTTGG---GSTTHHHHHHHH------------------HHCCCBCHHHHHHHHHHHTCSEEEE
T ss_pred             HH-HHcCCC---HHHHHHHHhhhc------------------ccccCCCHHHHHHHHHHcCCCeEEE
Confidence            11 100000   000 01122222                  2234567889999999999987643
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.85
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 97.0
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.52
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.24
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.71
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.6
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 95.48
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 95.1
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 94.93
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 94.6
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 94.48
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 94.13
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 93.26
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 93.01
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 92.65
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 92.61
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 92.4
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 90.23
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 90.19
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 86.24
d2p7ia1225 Hypothetical protein ECA1738 {Erwinia carotovora [ 83.12
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 80.76
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 80.61
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.85  E-value=0.00059  Score=61.52  Aligned_cols=131  Identities=16%  Similarity=0.159  Sum_probs=80.0

Q ss_pred             hhccCCCcchhhHhHHHHHHHHhhh--CCceEEEEEcccCCCCCcHHHHHHHhhcccCCCCCCCCCeEEEeEecCCHHHH
Q 048299          162 LNQITPFIRFSHLTANQAILESLQV--GQQSIHILDFDIMHGVQWPPLMQALVERFKNSNMLQPPPMLRITGTGNDIEIL  239 (459)
Q Consensus       162 f~~~~P~~kfa~ftaNqAILEA~~g--~~~~VHIIDf~I~~G~QWp~LiqaLa~R~~~~~~~~gpp~LRIT~i~~~~~~l  239 (459)
                      +....|+...    .++.|.+-+..  .+ .-||+|+|.|.|.    +...|+...       ..|..+||||+.+.+.+
T Consensus        15 i~~~iP~Y~~----~~~~i~~~~~~~~~~-~~~vLDlGCGtG~----~~~~l~~~~-------~~~~~~v~giD~S~~ml   78 (225)
T d1im8a_          15 IQRSVPGYSN----IITAIGMLAERFVTA-DSNVYDLGCSRGA----ATLSARRNI-------NQPNVKIIGIDNSQPMV   78 (225)
T ss_dssp             HHHHSTTHHH----HHHHHHHHHHHHCCT-TCEEEEESCTTCH----HHHHHHHTC-------CCSSCEEEEECSCHHHH
T ss_pred             HHhcCCCHHH----HHHHHHHHHHHhcCC-CCEEEEeccchhh----HHHHHHHhh-------cCCCCceEEeCCCHHHH
Confidence            3445686444    34445444332  23 5689999999884    445555443       45789999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeEEEEEeecCCCCCCccccccccccccCCCCeEEEehhhhhhhhccCCCChhHHHHHHHH-Hhc
Q 048299          240 QRTGERLLKFAQSLGLRFQFHPLLLMNDDPTSVAFYLPSALTILPDETLAVNCMLFLHKLLKDHDTRDLRLFLHKI-KAL  318 (459)
Q Consensus       240 ~etg~rL~~fA~~lgvpFeF~~v~~~~~e~~~~~~~l~~~l~~~~~EaLaVN~~~~Lh~l~~~~~~~~~~~~L~~i-r~L  318 (459)
                      +.+.+++.++.  ....+++.  ..+ ..+            ...++.-+|.|.+.+|++..+    ....+|+.| +.|
T Consensus        79 ~~A~~~~~~~~--~~~~~~~~--~~d-~~~------------~~~~~~d~i~~~~~l~~~~~~----d~~~~l~~i~~~L  137 (225)
T d1im8a_          79 ERCRQHIAAYH--SEIPVEIL--CND-IRH------------VEIKNASMVILNFTLQFLPPE----DRIALLTKIYEGL  137 (225)
T ss_dssp             HHHHHHHHTSC--CSSCEEEE--CSC-TTT------------CCCCSEEEEEEESCGGGSCGG----GHHHHHHHHHHHE
T ss_pred             HHHHHHhHhhc--ccchhhhc--cch-hhc------------cccccceeeEEeeeccccChh----hHHHHHHHHHHhC
Confidence            98887775332  23444444  221 111            122334456666778888432    466788887 579


Q ss_pred             CCCe-EEEEecC
Q 048299          319 NPRV-VTIAERE  329 (459)
Q Consensus       319 ~P~i-v~~~E~e  329 (459)
                      +|.- +++.|.-
T Consensus       138 kpgG~li~~~~~  149 (225)
T d1im8a_         138 NPNGVLVLSEKF  149 (225)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CCCceeeccccc
Confidence            9996 5555544
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure