Citrus Sinensis ID: 048334

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSLFILCVEKVMKDSNTCDR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccHHHHHHHHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgvmsrspPLLLALIIWFLLGTaysiqlpflrwkghpflaptSMMILMGLVYQLLFYIHiqdvpdvdgdrefGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQtvdlsnkastLSFYMFIWKASDCYTTLNTSLFILCVEKVmkdsntcdr
Flexible Loop (DISEMBL)
MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSLFILCVEKVMKDSNTCDR
Low Complexity Region (SEG)
MGVMSRSPPlllaliiwfllGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSLFILCVEKVMKDSNTCDR
Disordered region (IsUnstruct)
*********LLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSLFILCVEKVM********
Disordered Region (DISOPRED)
*GV*SRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSLFILCVEKVMKD******
Disordered Region (DISEMBL)
MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSLFILCVEKVMKDSNTCDR
Disordered Region (DISPRO)
MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSLFILCVEKVMKD******
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSLFILCVEKVMKDSNTCDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	no	no	0.806	0.361	0.432	5e-35
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.795	0.366	0.409	5e-33
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.795	0.351	0.352	8e-28
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.795	0.352	0.375	4e-27
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.751	0.352	0.304	3e-06
Q0D576	379	Probable homogentisate ph	no	no	0.497	0.237	0.312	6e-05

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  147 bits (370), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 32/178 (17%)

Query: 7   SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ----- 61
           S PL LAL I F+LGTAYSI LPFLRWK    +A   ++ +  ++ QL F++HIQ     
Sbjct: 214 SQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFR 273

Query: 62  ---------------------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMM 94
                                      D+PD++GDR FGI++ SV +G++KVFW+ V ++
Sbjct: 274 RPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLL 333

Query: 95  LTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
             AY  AIL+GA+S+ L SK  T++ H+ILA ILW R++++DL++K +  SFYMFIWK
Sbjct: 334 EMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWK 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  140 bits (353), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 104/176 (59%), Gaps = 32/176 (18%)

Query: 9   PLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ------- 61
           PL  AL + F+LGTAYSI LP LRWK    +A   ++ +  ++ Q+ FY+HIQ       
Sbjct: 205 PLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRP 264

Query: 62  -------------------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLT 96
                                    D+PD++GD+ FGI++ SV +G+++VFW  V ++  
Sbjct: 265 ILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQM 324

Query: 97  AYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
           AY  AILVGA+S F+ SK+++++ H ILA  LW RA++VDLS+K    S YMFIWK
Sbjct: 325 AYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  123 bits (308), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 32/176 (18%)

Query: 9   PLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ------- 61
           PL   + I  ++ +AY++ LP LRWK +P L   + +  + +   L F++H+Q       
Sbjct: 222 PLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRP 281

Query: 62  -------------------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLT 96
                                    D+PD++GD +FGIQ+LS+ +G ++VFW+ V ++  
Sbjct: 282 TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEM 341

Query: 97  AYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
            YG  ILVGA+S  L SK++T++ H++LA +LW  A++VDL++     SFYMFIWK
Sbjct: 342 TYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 32/176 (18%)

Query: 9   PLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ------- 61
           PL+  L++     TAYSI +P LRWK +PF+A   M+    L   + ++ H+Q       
Sbjct: 221 PLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRP 280

Query: 62  -------------------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLT 96
                                    D+PDV+GD+E GI + +V +G+++ FW+ V     
Sbjct: 281 IGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEM 340

Query: 97  AYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
           A+G  IL GAS S   +K+ T + +++LA ILW +A++VDLS+KAST SFYMFIWK
Sbjct: 341 AFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%)

Query: 10  LLLALIIWFLL------GTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDV 63
           L++A +  FLL       T  ++ LPF +W   P    TS + L  LV  +      +D+
Sbjct: 231 LIIATVRGFLLNFGVYHATRAALGLPF-QWSA-PVAFITSFVTLFALVIAI-----TKDL 283

Query: 64  PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSI 123
           PDV+GDR+F I TL+  +G   + +LG  ++L  Y +AI +      +    + I +H I
Sbjct: 284 PDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVI 343

Query: 124 LAFILWRRAQTVDLSN--KASTLSFYMFIWK 152
           LA  L  +   ++ +N  K +   +Y FIW 
Sbjct: 344 LASGLIFQTWVLEKANYTKEAISGYYRFIWN 374

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 61  QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIIS 120
           +D+PDV+GDR++ I TL+  +G   + +LG  +++  Y AAI V         + V +  
Sbjct: 274 KDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPV 333

Query: 121 HSILA----FILWRRAQTVDLSNKASTLSFYMFIWK 152
           H+ LA    F  W   Q     +  S   +Y FIW 
Sbjct: 334 HAALAVGIIFQTWVLEQAKYTKDAIS--QYYRFIWN 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
147834812	408	hypothetical protein VITISV_006360 [Viti	0.928	0.411	0.524	2e-46
296082088	398	unnamed protein product [Vitis vinifera]	0.856	0.389	0.497	1e-44
224143266	284	predicted protein [Populus trichocarpa]	0.839	0.535	0.505	1e-43
359476155	397	PREDICTED: probable homogentisate phytyl	0.839	0.382	0.494	3e-43
219842170	411	homogentisate geranylgeranyl transferase	0.839	0.369	0.483	1e-40
295656253	401	homogentisate geranylgeranyl transferase	0.839	0.379	0.461	2e-40
33391138	408	homogentisic acid geranylgeranyl transfe	0.839	0.372	0.445	6e-39
374461300	239	aromatic prenyltransferase, partial [Epi	0.839	0.635	0.456	8e-39
33391144	404	homogentisic acid geranylgeranyl transfe	0.839	0.376	0.440	1e-38
125598038	408	hypothetical protein OsJ_22157 [Oryza sa	0.839	0.372	0.440	1e-38

>gi|147834812|emb|CAN68311.1| hypothetical protein VITISV_006360 [Vitis vinifera]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/183 (52%), Positives = 127/183 (69%), Gaps = 15/183 (8%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQ--------------LPFLRWKGHPFLAPTSMMI 46
           MG+M +SPPL  AL+I  LLGTAYSI+              +P LRWK +P LA + ++I
Sbjct: 170 MGIMFQSPPLFCALLISCLLGTAYSIEVCMIPIPIFLRGSKIPLLRWKRYPLLAASCILI 229

Query: 47  LMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGA 106
           +  +V QL F+ HIQD+PDVDGDREFGIQ+ +V +G++KVFWL V M+L AYGAA ++GA
Sbjct: 230 VRAIVVQLAFFAHIQDIPDVDGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGA 289

Query: 107 SSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTSL-F 165
           SSS +  K  T+  H  LA +LW RAQ+VDLS+K +  SFYMFIWKAS+  +    +L F
Sbjct: 290 SSSSMPXKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYMFIWKASESISPGIIALAF 349

Query: 166 ILC 168
           +LC
Sbjct: 350 VLC 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 121/187 (64%), Gaps = 32/187 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           MG+M +SPPL  AL+I FLLGTAYSI++P LRWK +P LA + ++I+  +V QL F+ HI
Sbjct: 177 MGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHI 236

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PDVDGDREFGIQ+ +V +G++KVFW
Sbjct: 237 QKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFW 296

Query: 89  LGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYM 148
           L V M+L AYGAA ++GASSS +  K  T+  H  LA +LW RAQ+VDLS+K +  SFYM
Sbjct: 297 LCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYM 356

Query: 149 FIWKASD 155
           FIWKAS+
Sbjct: 357 FIWKASE 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/184 (50%), Positives = 122/184 (66%), Gaps = 32/184 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           MG+M +SP L  AL+I  +LG+ YSI+LPFLRWK   FLA T +MI+  +V QL F++H+
Sbjct: 101 MGIMFQSPLLFSALLISCVLGSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHM 160

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PDVDGDR++GIQ+ SV +G+E+VFW
Sbjct: 161 QKFVLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFW 220

Query: 89  LGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYM 148
           L V M+L AYGAA++VGASS+FL SK +TI+ H  LAFILW RA++VDL++K S  SFYM
Sbjct: 221 LCVNMLLIAYGAAVVVGASSTFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYM 280

Query: 149 FIWK 152
           FIWK
Sbjct: 281 FIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/184 (49%), Positives = 118/184 (64%), Gaps = 32/184 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           MG+M +SPPL  AL+I FLLGTAYSI++P LRWK +P LA + ++I+  +V QL F+ HI
Sbjct: 201 MGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAIVVQLAFFAHI 260

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PDVDGDREFGIQ+ +V +G++KVFW
Sbjct: 261 QKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVFW 320

Query: 89  LGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYM 148
           L V M+L AYGAA ++GASSS +  K  T+  H  LA +LW RAQ+VDLS+K +  SFYM
Sbjct: 321 LCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFYM 380

Query: 149 FIWK 152
           FIWK
Sbjct: 381 FIWK 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 121/186 (65%), Gaps = 34/186 (18%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           MG+  +SPPLL AL+I F LG+ YSI+LPFLRWK H FLA + ++I+  +V QL F++HI
Sbjct: 213 MGITFQSPPLLAALLISFALGSVYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHI 272

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PDV+GDR++GIQ+ SV +G+E+V W
Sbjct: 273 QKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLW 332

Query: 89  LGVYMMLTAYGAAILVGAS--SSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSF 146
           L V M+L AYGAA++ GAS  SS L  KL+T+I HS +A+ILW +AQ VDL+++ S  SF
Sbjct: 333 LCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSF 392

Query: 147 YMFIWK 152
           YMFIWK
Sbjct: 393 YMFIWK 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 119/184 (64%), Gaps = 32/184 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           MG++ +SPP+  AL+I FL G+AYS++LP LRWK + FLA  S++++  +   L F+ HI
Sbjct: 205 MGIVFQSPPVFFALLICFLFGSAYSVELPLLRWKRNAFLAAFSILMVRAITVNLAFFYHI 264

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PDVDGDR+FGIQ+ SV +G+++VFW
Sbjct: 265 QKYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRVFW 324

Query: 89  LGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYM 148
           L + ++L AY +A+++GASSSFLLSKLVT+I H  LA ILWRRA +V+L + +S  SFYM
Sbjct: 325 LCIGILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILWRRANSVNLEDNSSMTSFYM 384

Query: 149 FIWK 152
            IWK
Sbjct: 385 SIWK 388

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391138|gb|AAP43911.1| homogentisic acid geranylgeranyl transferase [Hordeum vulgare] gi|326497589|dbj|BAK05884.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 32/184 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           +G+ S S PL+ ALI+ FLLG+AYSI+ PFLRWK H  LA + ++ +  ++ QL F+ H+
Sbjct: 212 IGIRSGSAPLMCALIVSFLLGSAYSIEAPFLRWKRHALLAASCILFVRAILVQLAFFAHM 271

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PDVDGDR+FGIQ+LSV +G ++V+ 
Sbjct: 272 QQHVLKRPLAATKSLVFATLFMCCFSAVIALFKDIPDVDGDRDFGIQSLSVRLGPQRVYQ 331

Query: 89  LGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYM 148
           L + ++LTAYGAA LVGASS+ L  K++T+  H +LA  LW+RAQ  ++ N+A   SFYM
Sbjct: 332 LCISILLTAYGAATLVGASSTNLFQKIITVSGHGLLALTLWQRAQHFEVENQARVTSFYM 391

Query: 149 FIWK 152
           FIWK
Sbjct: 392 FIWK 395

Source: Hordeum vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461300|gb|AEZ53108.1| aromatic prenyltransferase, partial [Epimedium acuminatum]

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 116/184 (63%), Gaps = 32/184 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           MG+M +SPPLL +++  FLL TAYS+ LPFLRWK    L    ++ +  LV  L F++H+
Sbjct: 35  MGIMFKSPPLLYSILTVFLLATAYSLHLPFLRWKKSAVLTSVCIISVRALVIPLGFFLHM 94

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PDVDGD  FG+Q+L++ +GKEKVFW
Sbjct: 95  QKYVLGRPAIITKPVMFAVAFMAIISTVIAVIKDIPDVDGDEAFGLQSLTIRLGKEKVFW 154

Query: 89  LGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYM 148
           LGV  +L AYG A++VGASS+ + +K++T++ H ILA ILW RA+TV +S  ASTLSFY+
Sbjct: 155 LGVSTLLMAYGTAVIVGASSTLMSNKIITVLGHCILASILWTRARTVVISEPASTLSFYL 214

Query: 149 FIWK 152
           F+WK
Sbjct: 215 FVWK 218

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391144|gb|AAP43913.1| homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 113/184 (61%), Gaps = 32/184 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           +G+ S+S PLL AL I F LG+AYS+  P LRWK + FLA + ++ +  ++ QL F+ H+
Sbjct: 208 IGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHM 267

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PD+DGDR FG+++LSV +G E+V+W
Sbjct: 268 QQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYW 327

Query: 89  LGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYM 148
           L + ++LTAYGAAIL GASS+ L   ++T+  H +LAF LW+RAQ  D+ NKA   SFYM
Sbjct: 328 LCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYM 387

Query: 149 FIWK 152
           FIWK
Sbjct: 388 FIWK 391

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598038|gb|EAZ37818.1| hypothetical protein OsJ_22157 [Oryza sativa Japonica Group]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 113/184 (61%), Gaps = 32/184 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           +G+ S+S PLL AL I F LG+AYS+  P LRWK + FLA + ++ +  ++ QL F+ H+
Sbjct: 212 IGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHM 271

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PD+DGDR FG+++LSV +G E+V+W
Sbjct: 272 QQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYW 331

Query: 89  LGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYM 148
           L + ++LTAYGAAIL GASS+ L   ++T+  H +LAF LW+RAQ  D+ NKA   SFYM
Sbjct: 332 LCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFYM 391

Query: 149 FIWK 152
           FIWK
Sbjct: 392 FIWK 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.558	0.248	0.460	2.9e-30
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.558	0.246	0.450	1.2e-29
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.718	0.330	0.411	1.4e-23
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.679	0.312	0.310	2.3e-08

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 267 (99.0 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
 Identities = 47/102 (46%), Positives = 75/102 (73%)

Query:    51 VYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSF 110
             +Y ++  +  +D+PD++GD +FGIQ+LS+ +G ++VFW+ V ++  AYG  ILVGA+S  
Sbjct:   294 IYAIVIAL-FKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPI 352

Query:   111 LLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
             L SK++T++ H+ILA +LW  A++ DL++     SFYMFIWK
Sbjct:   353 LWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 265 (98.3 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 46/102 (45%), Positives = 75/102 (73%)

Query:    51 VYQLLFYIHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSF 110
             +Y ++  +  +D+PD++GD +FGIQ+LS+ +G ++VFW+ V ++   YG  ILVGA+S  
Sbjct:   297 IYAIVIAL-FKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPI 355

Query:   111 LLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
             L SK++T++ H++LA +LW  A++VDL++     SFYMFIWK
Sbjct:   356 LWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 56/136 (41%), Positives = 87/136 (63%)

Query:    23 AYSIQLPF-LRWKGHPFLAPT--SMMILMGLVYQLLFYIHI---QDVPDVDGDREFGIQT 76
             A  +Q+ F L  + H F  P   +  ++    +   F + I   +D+PD++GD+ FGI++
Sbjct:   245 AIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRS 304

Query:    77 LSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVD 136
              SV +G+++VFW  V ++  AY  AILVGA+S F+ SK+++++ H ILA  LW RA++VD
Sbjct:   305 FSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVD 364

Query:   137 LSNKASTLSFYMFIWK 152
             LS+K    S YMFIWK
Sbjct:   365 LSSKTEITSCYMFIWK 380

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 41/132 (31%), Positives = 67/132 (50%)

Query:    22 TAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQDVPDVDGDREFGIQTLSVII 81
             T  ++ LPF +W   P    TS + L  LV  +      +D+PDV+GDR+F I TL+  +
Sbjct:   256 TRAALGLPF-QWSA-PVAFITSFVTLFALVIAIT-----KDLPDVEGDRKFQISTLATKL 308

Query:    82 GKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN-- 139
             G   + +LG  ++L  Y +AI +      +    + I +H ILA  L  +   ++ +N  
Sbjct:   309 GVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYT 368

Query:   140 KASTLSFYMFIW 151
             K +   +Y FIW
Sbjct:   369 KEAISGYYRFIW 380


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.139   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      181       170   0.00086  108 3  11 22  0.44    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  154 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.75u 0.17s 14.92t   Elapsed:  00:00:00
  Total cpu time:  14.75u 0.17s 14.92t   Elapsed:  00:00:00
  Start:  Fri May 10 22:28:43 2013   End:  Fri May 10 22:28:43 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032719001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (373 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00032449001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (502 aa)	•		•			•	•		0.961
	GSVIVG00023813001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (340 aa)						•	•		0.905
	GSVIVG00020095001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (340 aa)						•	•		0.905
	GSVIVG00015688001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (196 aa)						•	•		0.902
	GSVIVG00016328001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (467 aa)			•			•	•		0.850
	GSVIVG00027948001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (420 aa)						•	•		0.810
	GSVIVG00017359001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (466 aa)						•	•		0.804
	GSVIVG00019306001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (234 aa)			•						0.430
	GSVIVG00029773001	SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (142 aa)			•						0.429
	GSVIVG00013955001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (345 aa)	•					•	•		0.420

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	3e-63
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	7e-26
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-08
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	2e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-04
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	3e-04
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	7e-04
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	0.001
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	0.004
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	0.004

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  196 bits (499), Expect = 3e-63
 Identities = 87/184 (47%), Positives = 116/184 (63%), Gaps = 32/184 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI 60
           MG +  S PL  AL + F+LGTAYSI LP LRWK     A + ++ +  +V QL F++H+
Sbjct: 84  MGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHM 143

Query: 61  Q--------------------------------DVPDVDGDREFGIQTLSVIIGKEKVFW 88
           Q                                D+PDV+GDR FGI++ SV +G+++VFW
Sbjct: 144 QTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFW 203

Query: 89  LGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYM 148
           L V ++  AY AAILVGASSSFL SK++T++ H ILA ILW+RAQ+VDLS+KA+  SFYM
Sbjct: 204 LCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYM 263

Query: 149 FIWK 152
           FIWK
Sbjct: 264 FIWK 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  100 bits (250), Expect = 7e-26
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 33/177 (18%)

Query: 7   SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ----- 61
            P LL+ + I  L+GTAYS  LP +R K  P LA   +  + G++  L  ++H Q     
Sbjct: 119 GPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGG 176

Query: 62  --------------------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMML 95
                                     D+PD++GDR++ I T ++ +GK+ VF L  +++ 
Sbjct: 177 SVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLT 236

Query: 96  TAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWK 152
             Y   I VG  S   ++    I+SH IL  +LW R+Q VDL +K +   FY FIWK
Sbjct: 237 ACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK 293

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 31/178 (17%)

Query: 1   MGVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFY--- 57
           +  +   P LLL  ++  LLG  YS   P LR K  P L    + +  GL+  L  Y   
Sbjct: 85  LLALLLGPLLLLLGLLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGAYAVG 141

Query: 58  ---------------------IHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLT 96
                                +   D+ DV+GDR+ GI+TL V +G+++   L       
Sbjct: 142 GDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALAL----YAL 197

Query: 97  AYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSFYMFIWKAS 154
              AA+L+      LL+ L+ +++  +LA  L   A+ +   N       ++FI    
Sbjct: 198 LLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIALLF 255

Length = 259

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 7   SPPLLLALIIW---FLLGTAYSIQLPFLRWKGHPFLAP-TSMMILMGLVYQL--LFYIHI 60
           +PPL L    W   F LG +Y I LP+  W GH         + ++ L+Y +  L    +
Sbjct: 146 APPLKLKQNGWLGNFALGASY-IALPW--WAGHALFGELNPDIAVLTLIYSIAGLGIAIV 202

Query: 61  QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYG--AAILVGASSSFLLSKLVTI 118
            D   V+GDR  G+Q+L V  G E   W+ V  +    G  AA L+    +   + LV +
Sbjct: 203 NDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAAALVAL 262

Query: 119 I 119
           I
Sbjct: 263 I 263

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 60  IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTI- 118
           I+DV D++GDR  G +TL ++IG  K  ++    +L A  A+ L    S+F L  LV + 
Sbjct: 176 IKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGLWYLVLVA 235

Query: 119 ISHSILAFILWRRAQTVDLSNKASTLSFYMF 149
            +  ++    +R  +  D +     L + MF
Sbjct: 236 PADLVMLAAAYRSLKKTDPTASQKLLKYGMF 266

Length = 276

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 60  IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTII 119
           I  + D++GDR+ G+++L V+ G +K   L + ++L    +A+LV       L  L+ ++
Sbjct: 186 IYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLA---SALLVLLGLLAGLLGLIYLL 242

Query: 120 SHSILAFILWRRAQTVDLSNKASTLSFYMFIW 151
              + A +L  +   VD+ +  +  + +    
Sbjct: 243 GLLVAALLLLYQILIVDVRDPPACFALFDVNL 274

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 8   PPLLLALIIWF---LLGTAYSIQLPFLRWKGHPFLAPTSMMIL-MGLVYQLLFY--IHIQ 61
           PP+ L    W     +G +Y   LP+    GH   AP +   + + L+Y L  +  + + 
Sbjct: 125 PPIKLKRNGWLGPPAVGLSY-EGLPW--MAGHAIFAPLTWQSVVVALIYSLGAHGIMTLN 181

Query: 62  DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMM 94
           D   V+GDR+ G+++L V+IG ++   + V  +
Sbjct: 182 DFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTI 214

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 23/122 (18%)

Query: 12  LALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMM--ILMG-LVYQLLF------------ 56
            AL+ + +L   YS   P LR+K  P L   S    IL G   Y L+             
Sbjct: 117 PALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLYILPGVAAYALVSGSLPPLLAVAGG 174

Query: 57  YIHI------QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSF 110
           ++          +PD++ DR  GI+T + ++G+ + +       L A  A   V      
Sbjct: 175 WLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDLRLGA 234

Query: 111 LL 112
           LL
Sbjct: 235 LL 236

Length = 282

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 8   PPLLLALIIWF---LLGTAYSIQLPFLRWKGHPFLA---PTSMMILMGLVYQL--LFYIH 59
           PPL L    W     +G +Y   LP+  W G        P+  ++++ L+Y L     + 
Sbjct: 151 PPLRLKQNGWLGNYAVGLSY-EGLPW--WAGAAAFGAGLPSWPIVILALLYSLGAHGIMT 207

Query: 60  IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAI 102
           + D   V+GDR+ G+++L V+ G++    +   ++     A I
Sbjct: 208 LNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI 250

Length = 314

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 7   SPPLLLALIIW---FLLGTAYSIQLPFLRWKGHP-FLAPTSMMILMGLVYQL--LFYIHI 60
           +PPL L    W   + LG +Y I LP+  W G   F   T  ++++ L+Y +  L    +
Sbjct: 215 APPLKLKQNGWIGNYALGASY-ISLPW--WAGQALFGTLTPDVVVLTLLYSIAGLGIAIV 271

Query: 61  QDVPDVDGDREFGIQTLSVIIGKEKVFWLGV 91
            D   ++GDR  G+Q+L V  G E   W+ V
Sbjct: 272 NDFKSIEGDRALGLQSLPVAFGVETAKWICV 302

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.71
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.7
PRK13595	292	ubiA prenyltransferase; Provisional	99.68
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.68
PLN00012	375	chlorophyll synthetase; Provisional	99.67
PRK12872	285	ubiA prenyltransferase; Reviewed	99.63
PRK13105	282	ubiA prenyltransferase; Reviewed	99.62
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.61
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.58
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.57
PRK05951	296	ubiA prenyltransferase; Reviewed	99.54
PRK12884	279	ubiA prenyltransferase; Reviewed	99.53
PRK13591	307	ubiA prenyltransferase; Provisional	99.45
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.44
PRK12882	276	ubiA prenyltransferase; Reviewed	99.43
PLN02922	315	prenyltransferase	99.43
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.43
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.42
PRK12875	282	ubiA prenyltransferase; Reviewed	99.4
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.39
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.37
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.37
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.33
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.32
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.28
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.21
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.09
PRK12888	284	ubiA prenyltransferase; Reviewed	99.09
PRK13106	300	ubiA prenyltransferase; Reviewed	99.05
PRK12886	291	ubiA prenyltransferase; Reviewed	99.04
PRK12876	300	ubiA prenyltransferase; Reviewed	99.03
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.01
PRK12874	291	ubiA prenyltransferase; Reviewed	98.96
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.94
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.94
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	98.94
PRK12895	286	ubiA prenyltransferase; Reviewed	98.94
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	98.78
PRK12871	297	ubiA prenyltransferase; Reviewed	98.68
PRK04375	296	protoheme IX farnesyltransferase; Provisional	98.59
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	98.49
PRK12873	294	ubiA prenyltransferase; Reviewed	98.39
PRK13362	306	protoheme IX farnesyltransferase; Provisional	98.05
PRK13592	299	ubiA prenyltransferase; Provisional	97.85
PLN02776	341	prenyltransferase	96.63
KOG4581	359	consensus Predicted membrane protein [Function unk	94.42
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	91.51

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=3.1e-52  Score=363.73  Aligned_cols=162  Identities=54%  Similarity=0.889  Sum_probs=156.1

Q ss_pred             ccccccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHhc--------------------
Q 048334            2 GVMSRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHIQ--------------------   61 (181)
Q Consensus         2 g~~~~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~h~~--------------------   61 (181)
                      |+..|++|+++++..++++|++||+|+||+||||+|+++++|++++|++++|+|+|+||+                    
T Consensus        85 a~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f  164 (280)
T PLN02878         85 GWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAF  164 (280)
T ss_pred             HHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHH
Confidence            456788899999999999999999999999999999999999999999999999999964                    


Q ss_pred             ------------cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 048334           62 ------------DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILW  129 (181)
Q Consensus        62 ------------DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~  129 (181)
                                  |+||+||||++|+||+|+++|+|+++++|..++.+||++++.+|++++..+++++++++|++++..+|
T Consensus       165 ~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~  244 (280)
T PLN02878        165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILW  244 (280)
T ss_pred             HHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence                        99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCchhHHHHHHHHHHHHHhhhhHHHH
Q 048334          130 RRAQTVDLSNKASTLSFYMFIWKASDCYTTLNTS  163 (181)
Q Consensus       130 ~r~~~vdl~sk~si~sfY~fIWkLFy~e~~~~~~  163 (181)
                      +|++++|++||++++|||||||||||+||++...
T Consensus       245 ~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~  278 (280)
T PLN02878        245 QRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPL  278 (280)
T ss_pred             HHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998743

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.9e-42  Score=303.02  Aligned_cols=157  Identities=37%  Similarity=0.612  Sum_probs=147.6

Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHh-------------------------
Q 048334            6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIHI-------------------------   60 (181)
Q Consensus         6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~h~-------------------------   60 (181)
                      .+++.++..++++++|++||  +||+|+||+|+++..|+++++|.+.++|.|.|.                         
T Consensus       118 ~~~~~~~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (308)
T PRK12887        118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFT  195 (308)
T ss_pred             HhHHHHHHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence            36788888899999999999  999999999999999999999988888866542                         


Q ss_pred             ------ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 048334           61 ------QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQT  134 (181)
Q Consensus        61 ------~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~  134 (181)
                            +|+||+||||+.|+||+|+++|+|++.+++..++.++|+..++.++.....+++.+++++|++++..+|+|+++
T Consensus       196 ~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (308)
T PRK12887        196 FAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQR  275 (308)
T ss_pred             HHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  19999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCchhHHHHHHHHHHHHHhhhhHHHHH
Q 048334          135 VDLSNKASTLSFYMFIWKASDCYTTLNTSL  164 (181)
Q Consensus       135 vdl~sk~si~sfY~fIWkLFy~e~~~~~~~  164 (181)
                      +|++||++++|||||||||||+||++...+
T Consensus       276 ~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~  305 (308)
T PRK12887        276 VDLQDKQAIAQFYQFIWKLFFLEYLLFPIA  305 (308)
T ss_pred             cCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998654

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.71  E-value=1.6e-16  Score=141.41  Aligned_cols=134  Identities=19%  Similarity=0.310  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH------------------HHH-HHH-----HHHhccC
Q 048334            8 PPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL------------------VYQ-LLF-----YIHIQDV   63 (181)
Q Consensus         8 ~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~------------------i~~-lg~-----f~h~~Di   63 (181)
                      +++++..+++++++++||  .||+|+||++++.........+.                  +.. ..+     +.+++|+
T Consensus       125 ~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~  202 (331)
T PRK12392        125 MVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDF  202 (331)
T ss_pred             HHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            344455568899999999  89999999987533221111110                  000 111     1246799


Q ss_pred             CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334           64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST  143 (181)
Q Consensus        64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si  143 (181)
                      +|+||||+.|+||+|+++|+|++++++...+.+.++..+..+......   ......-++++.++++|.+.  .+||.+-
T Consensus       203 ~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~l--~r~p~~~  277 (331)
T PRK12392        203 KSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFT---VLMYFILVGLVLNIVIQIQL--YRDPKGG  277 (331)
T ss_pred             cchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHH--HhChhhh
Confidence            999999999999999999999999999988888888888888776642   33334556677778888876  6777766


Q ss_pred             HHHHH
Q 048334          144 LSFYM  148 (181)
Q Consensus       144 ~sfY~  148 (181)
                      .||-|
T Consensus       278 ~~~~~  282 (331)
T PRK12392        278 ISFMQ  282 (331)
T ss_pred             hHHHh
Confidence            66654

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.70  E-value=1.5e-16  Score=136.46  Aligned_cols=151  Identities=19%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             cccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhh----HHHHHHH---HH-----------H--HHHHHHH----HHh
Q 048334            5 SRSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLA----PTSMMIL---MG-----------L--VYQLLFY----IHI   60 (181)
Q Consensus         5 ~~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~la----a~~i~~v---~g-----------~--i~~lg~f----~h~   60 (181)
                      .++++......++++++++||  .||+|+||++++.    +.++...   .+           +  .+..+++    .|.
T Consensus       103 l~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~  180 (283)
T TIGR01476       103 LGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGAHGIMTL  180 (283)
T ss_pred             HHHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            344443555567888999999  9999999998643    2221110   10           1  1122222    356


Q ss_pred             ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334           61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK  140 (181)
Q Consensus        61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk  140 (181)
                      +|++|+||||+.|.||+|+++|+|++.+++..++.++|+..+........   +....+.-+++...++.+.+.+ .+++
T Consensus       181 nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~l~~ll~~p~~~~~~~~~-~~~~  256 (283)
T TIGR01476       181 NDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQ---PWVATIVFLLLVAQIYNQIKLF-LRDP  256 (283)
T ss_pred             HhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHH-HhCh
Confidence            79999999999999999999999999999999999999877755544322   1211223334444444444433 3477


Q ss_pred             hhHHHHHHHHHHHHHhhhhHH
Q 048334          141 ASTLSFYMFIWKASDCYTTLN  161 (181)
Q Consensus       141 ~si~sfY~fIWkLFy~e~~~~  161 (181)
                      ++...-|+..+|++++--.+-
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~  277 (283)
T TIGR01476       257 QQNYVRYNATANPFYVLGMLA  277 (283)
T ss_pred             HHhhHHhhhhcHHHHHHHHHH
Confidence            778888999999998866543

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.68  E-value=1.1e-15  Score=134.68  Aligned_cols=139  Identities=23%  Similarity=0.259  Sum_probs=91.8

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHH-----HH---------HHHHHH--H---HH-hccCCCh
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILM-----GL---------VYQLLF--Y---IH-IQDVPDV   66 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~-----g~---------i~~lg~--f---~h-~~DipDi   66 (181)
                      +|..+....++++++++||  +||+|+|++|+++++|+....     +.         ...++.  |   .| +.|+||+
T Consensus       117 ~~~~~~l~~v~~~l~~~YS--~pPlRlK~rp~l~~l~~~~~g~p~~~~~~~~g~~~~~~~l~a~~~w~~g~dii~ai~Di  194 (292)
T PRK13595        117 PPAATLLLLLYAALFVGYS--LPPLRFKARPFLDGLSNAAYALPLALPALALGAPVPWPPLLALMAWSVGKHAFDAAQDI  194 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHc--cCccchhcCcchhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHhccCh
Confidence            4455566678899999999  999999999999988874211     10         111111  1   23 4599999


Q ss_pred             hhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhHHHH
Q 048334           67 DGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTLSF  146 (181)
Q Consensus        67 eGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si~sf  146 (181)
                      ||||+.|+||+|+++|+|++.++|..+..++    +.+-+..+.. -.+...+.-...+..+|     -|.+..++-..|
T Consensus       195 egDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a----~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  264 (292)
T PRK13595        195 PADRAAGTRTVATTLGVRGTALYALAWFLLA----GALLWPVSRL-TALALWLICGGMALALW-----RRPTPETAHRLY  264 (292)
T ss_pred             HhHHHcCCeechHHhCcHhHHHHHHHHHHHH----HHHHHHhcch-HHHHHHHHHHHHHHHHh-----cCCCHHHHhccc
Confidence            9999999999999999999999998554443    3322222211 12223334444444454     455556666777


Q ss_pred             HHHHHHHHHhh
Q 048334          147 YMFIWKASDCY  157 (181)
Q Consensus       147 Y~fIWkLFy~e  157 (181)
                      =.|+|-.+-+-
T Consensus       265 ~~~~~~~~~~g  275 (292)
T PRK13595        265 PLSIVTPWIVG  275 (292)
T ss_pred             hHHHHHhHHHH
Confidence            77888776555

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.68  E-value=8.4e-16  Score=134.41  Aligned_cols=148  Identities=17%  Similarity=0.144  Sum_probs=103.1

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH------------------HHH--HHHH----HHhcc
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL------------------VYQ--LLFY----IHIQD   62 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~------------------i~~--lg~f----~h~~D   62 (181)
                      +++.++..+++++++++||  .||+|+||++++....+....+.                  +..  .+++    ...+|
T Consensus       127 ~~~~~~l~~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~  204 (306)
T TIGR02056       127 FPNVFVLALFGSFIAFIYS--APPLKLKQNGWLGNFALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVND  204 (306)
T ss_pred             chHHHHHHHHHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666678899999999  99999999987644433221111                  100  1111    12469


Q ss_pred             CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334           63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS  142 (181)
Q Consensus        63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s  142 (181)
                      ++|+||||+.|.||+|+++|+|++.+++..++..+|...+.........+   .....-.+....++++.+.+ .+|+++
T Consensus       205 ~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~ll~ll~~p~~~~~~~~~-~~~~~~  280 (306)
T TIGR02056       205 FKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENL---YAAALVALIIPQITFQDKYF-LKDPLK  280 (306)
T ss_pred             ccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHH-HhChHh
Confidence            99999999999999999999999999999998888877665444332211   11223334456666665644 348888


Q ss_pred             HHHHHHHHHHHHHhhhhH
Q 048334          143 TLSFYMFIWKASDCYTTL  160 (181)
Q Consensus       143 i~sfY~fIWkLFy~e~~~  160 (181)
                      ....|+..-++||+---+
T Consensus       281 ~~~~~~~~~~~~~~~~~~  298 (306)
T TIGR02056       281 NDVKYQASAQPFLVLGIF  298 (306)
T ss_pred             hCcchhhhhhHHHHHHHH
Confidence            999999999999986543

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.67  E-value=2.4e-15  Score=136.01  Aligned_cols=150  Identities=19%  Similarity=0.204  Sum_probs=103.8

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHH------------H------HHHHHHHH------HHhcc
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILM------------G------LVYQLLFY------IHIQD   62 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~------------g------~i~~lg~f------~h~~D   62 (181)
                      +|+.++..+++++++++||  .||+|+||++++....+.+..            |      ++..+..+      ...+|
T Consensus       196 ~~~~~~l~l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd  273 (375)
T PLN00012        196 FPIVFYLALGGSLLSYIYS--APPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVND  273 (375)
T ss_pred             cHHHHHHHHHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444554567889999999  999999999997443321111            1      11111111      23569


Q ss_pred             CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334           63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS  142 (181)
Q Consensus        63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s  142 (181)
                      ++|+||||+.|++|+|+++|+|++.+++..++.+.+...+..-.....   ..+....-.+.+.+++++.+.+ ++||.+
T Consensus       274 ~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~---~~y~~~~~~l~l~~l~~~~~~~-~~~p~~  349 (375)
T PLN00012        274 FKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGK---PYYALALLGLIIPQIFFQFKYF-LPDPVK  349 (375)
T ss_pred             hcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH-hcCHHH
Confidence            999999999999999999999999999988777777655433222211   2333344445666676666633 679999


Q ss_pred             HHHHHHHHHHHHHhhhhHHH
Q 048334          143 TLSFYMFIWKASDCYTTLNT  162 (181)
Q Consensus       143 i~sfY~fIWkLFy~e~~~~~  162 (181)
                      ....|+..-+.|++--.+.+
T Consensus       350 ~~~~~~~~a~~~~~~~~l~~  369 (375)
T PLN00012        350 NDVKYQASAQPFLVFGLLVT  369 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998776653

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.63  E-value=9e-15  Score=124.57  Aligned_cols=101  Identities=30%  Similarity=0.452  Sum_probs=78.7

Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCc-ccccchhhhHHHHHHHHHHHHHHHH-H------------------H------H
Q 048334            6 RSPPLLLALIIWFLLGTAYSIQLPFL-RWKGHPFLAPTSMMILMGLVYQLLF-Y------------------I------H   59 (181)
Q Consensus         6 ~s~~l~~~~~~~l~lg~~YSv~~PPl-RlKr~p~laa~~i~~v~g~i~~lg~-f------------------~------h   59 (181)
                      .+++.++...++.++++.||  .||. |+||.|.+....+...+|....++. +                  .      .
T Consensus       102 ~~~~~~~~~~~~~~~~~~Ys--~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~  179 (285)
T PRK12872        102 GGPKFALIFIIPLILGILYS--VFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLYAVFIFLKSFIREI  179 (285)
T ss_pred             ccHHHHHHHHHHHHHHHHHh--ChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence            46777788888999999999  7776 6999998877766655543222211 1                  1      1


Q ss_pred             hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048334           60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASS  108 (181)
Q Consensus        60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~  108 (181)
                      ++|++|+||||+.|++|+|+++|+|++.+++..+..+.++..+......
T Consensus       180 ~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~  228 (285)
T PRK12872        180 VFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTG  228 (285)
T ss_pred             HHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3499999999999999999999999999999999999988887655543

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.62  E-value=3.1e-14  Score=124.54  Aligned_cols=142  Identities=20%  Similarity=0.169  Sum_probs=92.0

Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHH--HH----H------------HHHHHHHH------HHhc
Q 048334            6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMI--LM----G------------LVYQLLFY------IHIQ   61 (181)
Q Consensus         6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~--v~----g------------~i~~lg~f------~h~~   61 (181)
                      ++|+.+....++++.++.||  .||.|+|++|+.+..+...  ..    |            .+...+..      ...+
T Consensus       103 ~~~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~  180 (282)
T PRK13105        103 GSWASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFG  180 (282)
T ss_pred             hhHHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            35666666669999999999  9999999999986633211  11    1            01111111      1246


Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc--CCC
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVD--LSN  139 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vd--l~s  139 (181)
                      |+||+||||+.|+||+|+++|+|++.+++..+..++++..+..+...      ....   .+..+......+.+.  -++
T Consensus       181 ~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~~~~------~~l~---ll~~p~~~~~~~~~~~~~~~  251 (282)
T PRK13105        181 AVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALPWPG------WLAA---VLALPYVVNTARFWSVTDAD  251 (282)
T ss_pred             hCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHH---HHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999999998887444221      1111   111122222223222  357


Q ss_pred             chhHHHHHHHHHHHHHhhh
Q 048334          140 KASTLSFYMFIWKASDCYT  158 (181)
Q Consensus       140 k~si~sfY~fIWkLFy~e~  158 (181)
                      ++++..-|.-.-++=+.--
T Consensus       252 ~~~l~~~l~~~~~~~~~~~  270 (282)
T PRK13105        252 CERANRGWRRFLWLNYVSG  270 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7778777766555444433

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.61  E-value=6.4e-14  Score=120.41  Aligned_cols=150  Identities=16%  Similarity=0.080  Sum_probs=95.0

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHH---------------------HHHHH----HHhc
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVY---------------------QLLFY----IHIQ   61 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~---------------------~lg~f----~h~~   61 (181)
                      +++.++..+++++++++||  .||.|+|++++-...+-+ ..|...                     +.+++    .+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~Ys--~~p~~~~~~glge~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n  188 (293)
T PRK06080        112 GWWLLLLGLLCIAAAILYT--GGPKPYGYTGLGELFVGV-FFGLVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLAN  188 (293)
T ss_pred             hHHHHHHHHHHHHHhhhhc--CCCCccCCCCcHHHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            5566666678899999999  999999998863222211 111111                     11111    2356


Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccC-CCc
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDL-SNK  140 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl-~sk  140 (181)
                      |+||+||||+.|+||+|+++|+|++.++...+..++|+..+...+.....+   ... .-.+..+..+++.+.+.- +++
T Consensus       189 ~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~---~~l-l~ll~~p~~~~~~~~~~~~~~~  264 (293)
T PRK06080        189 NIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP---WGL-LFLLSLPLAVKAARPVLRKQKP  264 (293)
T ss_pred             CCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHH-HHHHHHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999999999999999999998887766542211   111 122223344444443322 245


Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHH
Q 048334          141 ASTLSFYMFIWKASDCYTTLNTS  163 (181)
Q Consensus       141 ~si~sfY~fIWkLFy~e~~~~~~  163 (181)
                      ++.....+..-+.....-.+.+.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~  287 (293)
T PRK06080        265 ETLIPALKATGKTNLLFGLLFAI  287 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554444433

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.58  E-value=5.6e-14  Score=115.22  Aligned_cols=132  Identities=27%  Similarity=0.387  Sum_probs=79.7

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHH--------------------H----HHhcc
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLF--------------------Y----IHIQD   62 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~--------------------f----~h~~D   62 (181)
                      +++.+....++.+++.+||   ||+|+||+|++....+..+.+....+|.                    +    .|.+|
T Consensus        91 ~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (257)
T PF01040_consen   91 GPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFND  167 (257)
T ss_pred             CchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666678888899999   9999999999766665544332221111                    1    23459


Q ss_pred             CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334           63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS  142 (181)
Q Consensus        63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s  142 (181)
                      ++|+||||+.|.||+|+++|++++..  ..+....+.. .....   .............+.+..++...+..+.+++++
T Consensus       168 ~~D~~~D~~~g~~Tl~v~~G~~~~~~--~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  241 (257)
T PF01040_consen  168 IRDIEGDRKAGRRTLPVLLGEKKARY--LLLTAGLLLF-LLLLL---GLFSPWPLIIALLLAALALIFILWFFRKRDPKK  241 (257)
T ss_pred             hhhHHHHHHcCCcchHHHHHHHHHHH--HHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence            99999999999999999999999998  2122222221 11111   112233344444444444444444455555555


Q ss_pred             HHHHH
Q 048334          143 TLSFY  147 (181)
Q Consensus       143 i~sfY  147 (181)
                      .+.++
T Consensus       242 ~~~~~  246 (257)
T PF01040_consen  242 PERLF  246 (257)
T ss_pred             HHHHH
Confidence            55444

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.57  E-value=1.1e-13  Score=121.45  Aligned_cols=131  Identities=20%  Similarity=0.257  Sum_probs=84.7

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHH--------------------HHH--HHHHH----HHh
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMG--------------------LVY--QLLFY----IHI   60 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g--------------------~i~--~lg~f----~h~   60 (181)
                      +++..+..+++++++++||  .||+|+||++++....+....|                    ++.  ..++.    .+.
T Consensus       131 ~~~~~~l~l~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~  208 (314)
T PRK07566        131 GPWVFLAALLGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTL  208 (314)
T ss_pred             ChHHHHHHHHHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4555555668899999999  8999999999753221111100                    111  11111    245


Q ss_pred             ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334           61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK  140 (181)
Q Consensus        61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk  140 (181)
                      +|++|+||||+.|+||+|+++|+|++.++...++.++|+..+........   .....+.-.+.+..++++.+.  .+++
T Consensus       209 ~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~~~~--~~~~  283 (314)
T PRK07566        209 NDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQ---PLYAAIVGLLLIPQITLQDRL--LRDP  283 (314)
T ss_pred             HHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHH--hhCh
Confidence            69999999999999999999999999999999999888876544322221   222223334455666666666  3344


Q ss_pred             hhHH
Q 048334          141 ASTL  144 (181)
Q Consensus       141 ~si~  144 (181)
                      ++..
T Consensus       284 ~~~~  287 (314)
T PRK07566        284 LERD  287 (314)
T ss_pred             hhcC
Confidence            4433

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.54  E-value=6.1e-13  Score=115.84  Aligned_cols=140  Identities=18%  Similarity=0.202  Sum_probs=92.1

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhh---HHH---------HHHHHH------H--HHHHHH----HHHhcc
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLA---PTS---------MMILMG------L--VYQLLF----YIHIQD   62 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~la---a~~---------i~~v~g------~--i~~lg~----f~h~~D   62 (181)
                      +++.+...++++++++.||  .||+|+|+.|+=.   +.+         ++...+      +  -++.++    ..+.++
T Consensus       115 ~~~~l~l~~~~~~~~~~Yt--~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~  192 (296)
T PRK05951        115 GIGAVTLALLGVFLWTCYM--GPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNN  192 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHc--CCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCC
Confidence            4455555578999999999  9999999876411   111         111001      1  112222    245679


Q ss_pred             CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334           63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS  142 (181)
Q Consensus        63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s  142 (181)
                      ++|+|+||+.|.||+|+++|+|++ .+-......+|+..+...+..-..+......+++.+....+.++.+..|.++++.
T Consensus       193 ~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~  271 (296)
T PRK05951        193 LRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEA  271 (296)
T ss_pred             CccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence            999999999999999999999999 6555667778877666555432222234455566666666667777767766666


Q ss_pred             HHHHHHH
Q 048334          143 TLSFYMF  149 (181)
Q Consensus       143 i~sfY~f  149 (181)
                      ..+.+..
T Consensus       272 ~~~~~~~  278 (296)
T PRK05951        272 TVQLFML  278 (296)
T ss_pred             HHHHHHH
Confidence            6666655

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.53  E-value=7.6e-13  Score=112.85  Aligned_cols=152  Identities=20%  Similarity=0.228  Sum_probs=94.2

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH-----------------HHH-HHHH---HH--hccC
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL-----------------VYQ-LLFY---IH--IQDV   63 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~-----------------i~~-lg~f---~h--~~Di   63 (181)
                      ++..++..++++++++.||     .|+||+|++....+....|.                 ... ..++   .|  .+|+
T Consensus       103 ~~~~~~~~~~~~~~~~~Ys-----~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  177 (279)
T PRK12884        103 SPLAFLVVILVSVLGILYN-----WKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDI  177 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHH-----HhhccccchhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555566678889999999     58999998654443322221                 100 1111   12  4599


Q ss_pred             CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334           64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST  143 (181)
Q Consensus        64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si  143 (181)
                      ||+||||+.|+||+|+++|+|++.+++.......++..+...+.....  ....+..-......++...+.++-+|+   
T Consensus       178 ~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~~~~~~~~~l~~~~~~~~~~~~---  252 (279)
T PRK12884        178 EDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFN--ILYLAPVLVADLIFLYSAYSLLRSQDR---  252 (279)
T ss_pred             hhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHhcCCCH---
Confidence            999999999999999999999999999988888887665544432211  222222222222222222345443333   


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 048334          144 LSFYMFIWKASDCYTTLNTSLFILCV  169 (181)
Q Consensus       144 ~sfY~fIWkLFy~e~~~~~~~~~~~~  169 (181)
                      ++++++ ++.++..-++-.++|.+|-
T Consensus       253 ~~~~~~-~~~~~~~~~~~~~~~~~~~  277 (279)
T PRK12884        253 ETIRKV-RKITLTAMLLALVAFALGA  277 (279)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence            335555 6667776677777788773

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.45  E-value=9.8e-13  Score=116.92  Aligned_cols=127  Identities=19%  Similarity=0.176  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHhcC--CCCC--cccccchhhhHHHHHHHHHHHH---------------HHHHHH--------HhccCCCh
Q 048334           14 LIIWFLLGTAYSI--QLPF--LRWKGHPFLAPTSMMILMGLVY---------------QLLFYI--------HIQDVPDV   66 (181)
Q Consensus        14 ~~~~l~lg~~YSv--~~PP--lRlKr~p~laa~~i~~v~g~i~---------------~lg~f~--------h~~DipDi   66 (181)
                      .+++.+.|+.||.  ..||  +|+|+.|.+..+.++...|...               ..+++.        .++|++|+
T Consensus       125 ~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~~~~~~i~l~~~~~l~~~~iindirDi  204 (307)
T PRK13591        125 AFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSLIPVGLIFLFFGVKLFINSCVYDFKDV  204 (307)
T ss_pred             HHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3578889999992  1225  4999998865555444333211               111221        34699999


Q ss_pred             hhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334           67 DGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK  140 (181)
Q Consensus        67 eGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk  140 (181)
                      ||||+.|.+|+|+++|++++.++...+..++|+..++..+..--.+.+.+.+-+-.+-+..+|.-++..|-+++
T Consensus       205 EGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~  278 (307)
T PRK13591        205 KGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSPFENEPS  278 (307)
T ss_pred             HhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCCcccCcH
Confidence            99999999999999999999999999999999988776665444455666665556666677766666544433

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.44  E-value=1.1e-11  Score=109.33  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=76.2

Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH---------------------HHHHHHH----HHh
Q 048334            6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL---------------------VYQLLFY----IHI   60 (181)
Q Consensus         6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~---------------------i~~lg~f----~h~   60 (181)
                      .+|+++....+|+++|++||  .||+|+|++|+ .-...+...|.                     .++.|+.    ++.
T Consensus       117 ~g~~~l~ig~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~  193 (304)
T PRK07419        117 SDWTVLGLVLLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFC  193 (304)
T ss_pred             hcHHHHHHHHHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35777777779999999999  99999999996 21111212221                     1223322    345


Q ss_pred             ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048334           61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGAS  107 (181)
Q Consensus        61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~  107 (181)
                      |++||+|.||+.|.||+|+++|+|++.++-..+...+|+..+.....
T Consensus       194 Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~  240 (304)
T PRK07419        194 SHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL  240 (304)
T ss_pred             cCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999988766554

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.43  E-value=7.3e-12  Score=107.20  Aligned_cols=145  Identities=24%  Similarity=0.269  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHH----------------HHHH--HHHH------hccC
Q 048334            8 PPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLV----------------YQLL--FYIH------IQDV   63 (181)
Q Consensus         8 ~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i----------------~~lg--~f~h------~~Di   63 (181)
                      +...+...++++++++||     .|+||+|++....+....|..                ..++  .+.+      ++|+
T Consensus       105 ~~~~~~~~~~~~~~~~Yt-----~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~  179 (276)
T PRK12882        105 PLCLAIALFNSLLLVLYA-----ETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLLALLVLFALAALATLAREIIKDV  179 (276)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            344444457788899999     599999987544432222210                0111  1111      3599


Q ss_pred             CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334           64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST  143 (181)
Q Consensus        64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si  143 (181)
                      ||+||||+.|++|+|+++|+|++.+++........+.....-..  ...+....+..-...+..++.+.+..|.+|++  
T Consensus       180 ~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~--  255 (276)
T PRK12882        180 EDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL--STFGLWYLVLVAPADLVMLAAAYRSLKKTDPT--  255 (276)
T ss_pred             hhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHH--
Confidence            99999999999999999999999998776665554443321111  11223344433333444455556666656654  


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHH
Q 048334          144 LSFYMFIWKASDCYTTLNTSLFI  166 (181)
Q Consensus       144 ~sfY~fIWkLFy~e~~~~~~~~~  166 (181)
                           .-|+.|...-......|+
T Consensus       256 -----~~~~~f~~~~~~g~~~~~  273 (276)
T PRK12882        256 -----ASQKLLKYGMFLALAAFI  273 (276)
T ss_pred             -----HHHHHHHHHHHHHHHHHH
Confidence                 335555554444444443

>PLN02922 prenyltransferase

Probab=99.43  E-value=1.4e-11  Score=109.10  Aligned_cols=101  Identities=20%  Similarity=0.215  Sum_probs=76.7

Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhh---hHHH---------HHHHHH------------------HHHHHH
Q 048334            6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFL---APTS---------MMILMG------------------LVYQLL   55 (181)
Q Consensus         6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~l---aa~~---------i~~v~g------------------~i~~lg   55 (181)
                      ++|++++--.+|++.|+.||  .||+|+|++|+=   .+.+         +....+                  .-++.|
T Consensus       121 ~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~g  198 (315)
T PLN02922        121 GNIRVILLLAAAILCGYVYQ--CPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVG  198 (315)
T ss_pred             cChHHHHHHHHHHHHHHHHh--cCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHH
Confidence            46777777789999999999  999999999981   1111         111111                  111223


Q ss_pred             HH----HHhccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048334           56 FY----IHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASS  108 (181)
Q Consensus        56 ~f----~h~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~  108 (181)
                      +.    ++.|+++|+|.||+.|.||+|+++|+|++.++-.+++..+|+..+...+..
T Consensus       199 ll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~  255 (315)
T PLN02922        199 LTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK  255 (315)
T ss_pred             HHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22    346799999999999999999999999999999999999999887666554

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.43  E-value=1.7e-11  Score=106.99  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH---------------------HHHHHHH----HHhc
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL---------------------VYQLLFY----IHIQ   61 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~---------------------i~~lg~f----~h~~   61 (181)
                      +|+++....+|+++|+.||  .||+|+|++|+= =...+...|.                     .++.|+.    +|.|
T Consensus       105 ~~~~l~lg~~g~~~~~~Yt--~gP~~l~y~gLG-E~~v~l~~G~l~v~g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~N  181 (285)
T TIGR02235       105 QITVLALVGLCCFLGYLYQ--GPPFRLGYQGLG-EPICWLCFGPLAIAAALYAQSQSFSLIPWKASILVGLATTLILFCS  181 (285)
T ss_pred             hHHHHHHHHHHHHHHHhhc--CCCcccCCCCcc-HHHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence            4677777778999999999  999999999961 1111111111                     1122322    4567


Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGAS  107 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~  107 (181)
                      +++|+|.||+.|.||+|+++|+|++.++-..++..+|+..+..-..
T Consensus       182 n~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~  227 (285)
T TIGR02235       182 HFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG  227 (285)
T ss_pred             CCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987765554

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.42  E-value=1.2e-11  Score=106.72  Aligned_cols=139  Identities=22%  Similarity=0.325  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHH------------------------HhccC
Q 048334            8 PPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYI------------------------HIQDV   63 (181)
Q Consensus         8 ~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~------------------------h~~Di   63 (181)
                      +..+....++++++++|      .++||.+++...++..+.+.....|..+                        ..+|+
T Consensus       116 ~~~~~l~~~~~~l~~~Y------~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~  189 (289)
T COG0382         116 PLAFLLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAI  189 (289)
T ss_pred             HHHHHHHHHHHHHHHHH------HHhhcCCchHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            34456667899999999      5999999998887665544322222211                        12399


Q ss_pred             CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334           64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST  143 (181)
Q Consensus        64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si  143 (181)
                      ||+||||+.|++|+|+.+|+|++.+++.... ........++......  ......++...+..+++|...+|.++++..
T Consensus       190 ~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (289)
T COG0382         190 QDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVRDPPAC  266 (289)
T ss_pred             cCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence            9999999999999999999999999999888 5555555555544331  246777888888999999999888877777


Q ss_pred             HHHHHHHHHHHH
Q 048334          144 LSFYMFIWKASD  155 (181)
Q Consensus       144 ~sfY~fIWkLFy  155 (181)
                      ..++..-..+-.
T Consensus       267 ~~~~~~~~~~~~  278 (289)
T COG0382         267 FALFDVNLLLGL  278 (289)
T ss_pred             HHHHHHhhHHHH
Confidence            776665554433

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.40  E-value=2.7e-12  Score=112.05  Aligned_cols=93  Identities=31%  Similarity=0.483  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHH--HH---------HH----HHHHHH--HH---HH-hccCCChhhh
Q 048334           11 LLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMM--IL---------MG----LVYQLL--FY---IH-IQDVPDVDGD   69 (181)
Q Consensus        11 ~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~--~v---------~g----~i~~lg--~f---~h-~~DipDieGD   69 (181)
                      ...++..++++++||  .||+|+|++|+....+..  ..         .+    ....++  ++   .| .+|+||+|+|
T Consensus       116 ~~~ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g~~~~~~~~~y~~~tg~~~~~~l~~a~~l~~~~~~~in~i~Die~D  193 (282)
T PRK12875        116 WPALLAFLVLSVEYS--APPLRFKTTPVLDSLSNGLYILPGVAAYALVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPD  193 (282)
T ss_pred             HHHHHHHHHHHHHHc--CCCccchhccHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence            334456789999999  999999999997654311  00         01    011111  11   12 4699999999


Q ss_pred             HHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 048334           70 REFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVG  105 (181)
Q Consensus        70 r~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g  105 (181)
                      |+.|+||+|+++|+|++.+++...-.++-...+.++
T Consensus       194 ~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        194 RAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888766555555544444

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.39  E-value=4.9e-11  Score=105.41  Aligned_cols=100  Identities=24%  Similarity=0.252  Sum_probs=73.4

Q ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCCcccccchhh---hHHHH--HHHHH-------------------------------
Q 048334            6 RSPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFL---APTSM--MILMG-------------------------------   49 (181)
Q Consensus         6 ~s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~l---aa~~i--~~v~g-------------------------------   49 (181)
                      .+++++..-.+|.++++.||  .||+|+|++|+=   .+.+.  ..+.|                               
T Consensus       112 ~g~~~l~igl~g~~~~~~Yt--~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~  189 (317)
T PRK13387        112 TSWLLLVIGLICFAIGILYT--GGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAII  189 (317)
T ss_pred             hcHHHHHHHHHHHHHhhhhc--CCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHH
Confidence            35666666778999999999  999999999941   11110  00100                               


Q ss_pred             ----HHHHHHHH----HHhccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048334           50 ----LVYQLLFY----IHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGAS  107 (181)
Q Consensus        50 ----~i~~lg~f----~h~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~  107 (181)
                          ..++.|+.    +|.+++||+|+||+.|.||+|+++|+|++.++-..+..++|+..+.....
T Consensus       190 ~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~  255 (317)
T PRK13387        190 AIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM  255 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                01122221    35679999999999999999999999999999999999999976655443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.37  E-value=1.4e-11  Score=107.80  Aligned_cols=129  Identities=21%  Similarity=0.180  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHH------------HHH------HH-HHHHHHH----H--hcc
Q 048334            8 PPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMI------------LMG------LV-YQLLFYI----H--IQD   62 (181)
Q Consensus         8 ~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~------------v~g------~i-~~lg~f~----h--~~D   62 (181)
                      +..+....+++++..+|+  .    +||+.++...-...            +.|      .+ ..++.+.    |  .-+
T Consensus       114 ~~~~~l~~~~~~~~~~Y~--~----~KR~t~~~~~~lg~~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya  187 (289)
T PLN02809        114 NYSRILGASSLLLVFTYP--L----MKRFTFWPQAFLGLTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYA  187 (289)
T ss_pred             HHHHHHHHHHHHHHHHHh--H----HHhcCcchHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445557788889998  2    99999864332110            111      11 1111111    2  127


Q ss_pred             CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334           63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS  142 (181)
Q Consensus        63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s  142 (181)
                      .+|+|+||+.|++|+|+++|+|...+++. +..++++..+.+|....  .+..+. ++|++.+..+++|.+.+|.+|+++
T Consensus       188 ~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~~--~~~~~~-~~~~~~~~~l~~~~~~v~~~~~~~  263 (289)
T PLN02809        188 HQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNAG--LGWPYY-AGLAAAAGHLAWQIQTVDLSSRAD  263 (289)
T ss_pred             HhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHhc--CcHHHH-HHHHHHHHHHHHHHHHcCCCCHHH
Confidence            89999999999999999999998888774 55556766666676543  334444 479999999999999999999886


Q ss_pred             HHHH
Q 048334          143 TLSF  146 (181)
Q Consensus       143 i~sf  146 (181)
                      ..+.
T Consensus       264 ~~~~  267 (289)
T PLN02809        264 CNRK  267 (289)
T ss_pred             HHHH
Confidence            5443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.37  E-value=3.6e-11  Score=103.37  Aligned_cols=81  Identities=16%  Similarity=0.242  Sum_probs=63.9

Q ss_pred             hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334           60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN  139 (181)
Q Consensus        60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s  139 (181)
                      .+|++|+||||+.|++|+|+++|+|++.++......+.++.....+......  .. -.++..+....++++.+.+|.+|
T Consensus       177 i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g--~~-y~~~~~~~~~~l~~~~~~~~~~~  253 (282)
T TIGR01475       177 IYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNG--YI-ALLALILIGLILAYEHYIVDPGD  253 (282)
T ss_pred             HHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCc--HH-HHHHHHHHHHHHHHHHHHcCCCC
Confidence            4599999999999999999999999999998888888888877777655432  22 22455566677888888988888


Q ss_pred             chhH
Q 048334          140 KAST  143 (181)
Q Consensus       140 k~si  143 (181)
                      +++.
T Consensus       254 ~~~~  257 (282)
T TIGR01475       254 QSKI  257 (282)
T ss_pred             HHHH
Confidence            7654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.33  E-value=1.3e-10  Score=99.76  Aligned_cols=150  Identities=15%  Similarity=0.163  Sum_probs=85.8

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHH-----------------HHH---H--hccCC
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLL-----------------FYI---H--IQDVP   64 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg-----------------~f~---h--~~Dip   64 (181)
                      ++..+....++.+++++||     .|+||++.+....+....|.....|                 ++.   +  .+|+|
T Consensus       103 ~~~~~~l~~~~~~~~~~Ys-----~~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~  177 (279)
T PRK09573        103 NIYAFLIALLNSILLYLYA-----KDLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRIIILFLCAFFSTWSREIVKDIE  177 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3444444557888899999     4899999875555443333211111                 111   1  24999


Q ss_pred             ChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-hhhccCCCchhH
Q 048334           65 DVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRR-AQTVDLSNKAST  143 (181)
Q Consensus        65 DieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r-~~~vdl~sk~si  143 (181)
                      |+||||+.|++|+|+++|+|++.+++.....+.......-.. .. ..+..+.+..- ++...+.++ .+..+-+||+  
T Consensus       178 D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~-~~~~~y~~~~~-~~~~~~l~~~~~~~~~~~~~--  252 (279)
T PRK09573        178 DIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYF-LG-IFGIYYLIVVI-ICDILFIIAMLILLKNPSIE--  252 (279)
T ss_pred             hhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHH-HHhHHHHHHHHHHHcCCCHH--
Confidence            999999999999999999999999887665555444432221 11 12223332222 222333333 3333222332  


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHH
Q 048334          144 LSFYMFIWKASDCYTTLNTSLFILC  168 (181)
Q Consensus       144 ~sfY~fIWkLFy~e~~~~~~~~~~~  168 (181)
                        .++-..|.....-++-.++|.+|
T Consensus       253 --~~~~~~~~~~~~m~~g~~~~~~~  275 (279)
T PRK09573        253 --GASKASKYLKIIMILGLIAFLIG  275 (279)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHh
Confidence              24455555555555666667766

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.32  E-value=7.1e-11  Score=103.08  Aligned_cols=97  Identities=11%  Similarity=0.126  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcccccchh---hhHHHH--HHHHH-------------H--HHHHHHH----HHhccCC
Q 048334            9 PLLLALIIWFLLGTAYSIQLPFLRWKGHPF---LAPTSM--MILMG-------------L--VYQLLFY----IHIQDVP   64 (181)
Q Consensus         9 ~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~---laa~~i--~~v~g-------------~--i~~lg~f----~h~~Dip   64 (181)
                      ++++--.++++.+++||  .||+|+|++|.   ..+.+.  ..+.|             +  .++.|+.    +|.+++|
T Consensus       110 ~~l~lg~~~~~~~~~Yt--~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~  187 (284)
T TIGR00751       110 WFIALGALCIAAAITYT--VGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVDWVGILPAVATGLLACAVLNINNLR  187 (284)
T ss_pred             HHHHHHHHHHHHhHhhc--CCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            45555568999999999  99999999994   222111  01111             1  1122322    4567999


Q ss_pred             ChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048334           65 DVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGAS  107 (181)
Q Consensus        65 DieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~  107 (181)
                      |+|+||+.|.||+|+++|+|++.++-..++..+|+..+.....
T Consensus       188 D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~  230 (284)
T TIGR00751       188 DIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA  230 (284)
T ss_pred             cchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999877665543

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.28  E-value=3e-10  Score=97.37  Aligned_cols=149  Identities=21%  Similarity=0.278  Sum_probs=82.9

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHH-----------------HHHHHHH---H--HhccCC
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGL-----------------VYQLLFY---I--HIQDVP   64 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~-----------------i~~lg~f---~--h~~Dip   64 (181)
                      +++.+....++.+++++||     .|+||.+++....+....|.                 +....+.   .  ..+|++
T Consensus       103 ~~~~~~~~~~~~~~~~~Y~-----~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~~~~~~~~~fl~~~~~~~~~~~~  177 (277)
T PRK12883        103 NIEAFLFALGAYVLMFLYA-----WKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLAICAFLVNVAREIMKDIE  177 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHh-----hcccCCcchhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3444444557788899999     57888886433322222211                 1111111   1  235999


Q ss_pred             ChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhHH
Q 048334           65 DVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKASTL  144 (181)
Q Consensus        65 DieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si~  144 (181)
                      |+||||+.|++|+|+++|+|++.++............. +.......+.-....   .+.+..+..+.+..+-+|+    
T Consensus       178 D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~-l~~~~~~~~~y~~~~---~~~~~~l~~~~~~~~~~~~----  249 (277)
T PRK12883        178 DIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASF-LPVKAGIGLGYLPII---IVDAIILYAAYLVLRNPDR----  249 (277)
T ss_pred             hhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHH-HHHHHcccHHHHHHH---HHHHHHHHHHHHHHhCcch----
Confidence            99999999999999999999998876554322222211 111111111111111   1233344444444433333    


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHH
Q 048334          145 SFYMFIWKASDCYTTLNTSLFILC  168 (181)
Q Consensus       145 sfY~fIWkLFy~e~~~~~~~~~~~  168 (181)
                      +.|.-..|+|...-++-.+.|.+|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~  273 (277)
T PRK12883        250 ETAHKGQKLLKIAIFLAVISFLLG  273 (277)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345557788888777777777776

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.21  E-value=4.6e-10  Score=96.87  Aligned_cols=80  Identities=19%  Similarity=0.257  Sum_probs=55.8

Q ss_pred             hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334           60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN  139 (181)
Q Consensus        60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s  139 (181)
                      +.+++|+|+|++.|++|+|+++|+|++.+++.......++..+. +......  ... -.++++.+..++++...+|.+|
T Consensus       184 ~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-~~~~~~~--~~~-y~~~~~~~~~l~~~~~~~~~~~  259 (285)
T PRK12847        184 IYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-GIISSLH--NIF-YLAILAAAGIFYYQYKLLDFDN  259 (285)
T ss_pred             HHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-HHHhcCc--HHH-HHHHHHHHHHHHHHHHHhCCCC
Confidence            34999999999999999999999999999888776666655443 3322211  111 1234445567788888888777


Q ss_pred             chhH
Q 048334          140 KAST  143 (181)
Q Consensus       140 k~si  143 (181)
                      +++.
T Consensus       260 ~~~~  263 (285)
T PRK12847        260 PANC  263 (285)
T ss_pred             HHHH
Confidence            6543

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.09  E-value=6.5e-09  Score=89.96  Aligned_cols=127  Identities=20%  Similarity=0.297  Sum_probs=72.2

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHH------------HHHH------HHHHHHHHH----H--hcc
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMM------------ILMG------LVYQLLFYI----H--IQD   62 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~------------~v~g------~i~~lg~f~----h--~~D   62 (181)
                      ++.......+++++++.||  .    +||+.++......            .+.|      .+..++.+.    |  ..+
T Consensus       108 ~~~~~~l~~~~~~~~~~Y~--~----~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a  181 (281)
T TIGR01474       108 NPLTILLGVASLALVATYP--F----MKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLGYDTIYA  181 (281)
T ss_pred             hHHHHHHHHHHHHHHHHhc--h----hcccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555568888999998  2    8887765322110            0111      111222221    2  249


Q ss_pred             CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchh
Q 048334           63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAS  142 (181)
Q Consensus        63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~s  142 (181)
                      ++|+|+||+.|+||+|+++|+|+..+........... ..+.+....  .+.... ++-.+....+.++...+|.+|+++
T Consensus       182 ~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~  257 (281)
T TIGR01474       182 MQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILL-LALAGLIAG--LGPVYY-LGLAAAALLLIRQIATLDIRDPEN  257 (281)
T ss_pred             HhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHH-HHHHHHHhC--CcHHHH-HHHHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999999999999999998865544433333333 333443332  223333 333344555666666777666654


Q ss_pred             H
Q 048334          143 T  143 (181)
Q Consensus       143 i  143 (181)
                      .
T Consensus       258 ~  258 (281)
T TIGR01474       258 C  258 (281)
T ss_pred             H
Confidence            3

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.09  E-value=3.2e-09  Score=92.60  Aligned_cols=81  Identities=17%  Similarity=0.252  Sum_probs=60.5

Q ss_pred             hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334           60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN  139 (181)
Q Consensus        60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s  139 (181)
                      ..|++|.|+||+.|+||+|+++|+|++.+++..+..+.++..+..+......  .... .+-.+.+..+.+|.+.+|.+|
T Consensus       178 i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~--~~y~-~~~~~~~~~l~~~~~~~~~~~  254 (284)
T PRK12888        178 IYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFG--ALWW-IGLAITAGAFAYEHAIVSPTD  254 (284)
T ss_pred             HHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHHHHHHHHHHHHHHHcCccC
Confidence            4599999999999999999999999998877776666666666666554332  2222 233466777788988999888


Q ss_pred             chhH
Q 048334          140 KAST  143 (181)
Q Consensus       140 k~si  143 (181)
                      ++..
T Consensus       255 ~~~~  258 (284)
T PRK12888        255 LSRV  258 (284)
T ss_pred             HHHH
Confidence            7754

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.05  E-value=6.3e-09  Score=91.76  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=52.9

Q ss_pred             hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048334           60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLS  138 (181)
Q Consensus        60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~  138 (181)
                      ..|++|+|+||+.|+||+|+++| +++..++..+..+.-+.....|.....  +.... .+-.+....+.+|.+.++.+
T Consensus       196 iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~l--g~~y~-~~~~~~~~~l~~~~~~~~~~  270 (300)
T PRK13106        196 YNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGL--GPIAI-AATILHGLIMAYAYYLASKK  270 (300)
T ss_pred             HHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhCCc
Confidence            35999999999999999999999 888888777666666666666654432  22332 23335556666777776655

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.04  E-value=1.5e-08  Score=88.61  Aligned_cols=78  Identities=14%  Similarity=0.256  Sum_probs=53.5

Q ss_pred             hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334           60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN  139 (181)
Q Consensus        60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s  139 (181)
                      ..+++|.|+||+.|++|+|+++|++++.+++.....+.+......+.....  +....+.. ++....+.+|.+.++.+|
T Consensus       181 ~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~~~-~~~~~~~l~~~~~~~~~~  257 (291)
T PRK12886        181 LYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL--GPWFLAGL-AVTGILLLYEHWLLRGGD  257 (291)
T ss_pred             HHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHH-HHHHHHHHHHHHHhCCCC
Confidence            458999999999999999999999999988877666666666655554322  22333222 233333346777777676


Q ss_pred             c
Q 048334          140 K  140 (181)
Q Consensus       140 k  140 (181)
                      +
T Consensus       258 ~  258 (291)
T PRK12886        258 L  258 (291)
T ss_pred             h
Confidence            4

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.03  E-value=1.2e-08  Score=90.60  Aligned_cols=87  Identities=14%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCch
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKA  141 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~  141 (181)
                      +.+|+|+||+.|++|+|+++|++++..++.....+.-+..+..|......+.-......-...+..+.+|.+.+|-++++
T Consensus       193 a~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~  272 (300)
T PRK12876        193 AIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLIDKKKST  272 (300)
T ss_pred             HHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCchH
Confidence            69999999999999999999999987777766666555555556554432211112222222233345665666655555


Q ss_pred             hHHHHHH
Q 048334          142 STLSFYM  148 (181)
Q Consensus       142 si~sfY~  148 (181)
                      ....|++
T Consensus       273 ~~~~~F~  279 (300)
T PRK12876        273 LEQKFFL  279 (300)
T ss_pred             HHHHHHH
Confidence            4444443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.01  E-value=1.5e-08  Score=87.53  Aligned_cols=79  Identities=11%  Similarity=0.179  Sum_probs=52.8

Q ss_pred             ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334           61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK  140 (181)
Q Consensus        61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk  140 (181)
                      .+++|.|+||+.|++|+|+++|+|++.+++.... +........+.....  +.... ++-.+....+.++.+.+|.+|+
T Consensus       182 ~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~y~-~~~~~~~~~~~~~~~~~~~~~~  257 (282)
T PRK12848        182 YAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQL-ATLALLAWAGWLLGL--GWAYY-WGLLVAAALFVYQQKLIRDRER  257 (282)
T ss_pred             HHhccHhhHHHcCCccccHHhccccHHHHHHHHH-HHHHHHHHHHHHhcC--cHHHH-HHHHHHHHHHHHHHHHcCCCCH
Confidence            3799999999999999999999999887764333 333333334443322  23333 3344556667777888888877


Q ss_pred             hhH
Q 048334          141 AST  143 (181)
Q Consensus       141 ~si  143 (181)
                      ++.
T Consensus       258 ~~~  260 (282)
T PRK12848        258 EAC  260 (282)
T ss_pred             HHH
Confidence            654

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=98.96  E-value=3.5e-08  Score=86.31  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=54.5

Q ss_pred             hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334           60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN  139 (181)
Q Consensus        60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s  139 (181)
                      ..+++|+|+||+.|++|+|+++|++++.++......+..+..+..+.....   .....++-.+.+..+++|.+.++.++
T Consensus       186 ~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~  262 (291)
T PRK12874        186 LYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHL---GLFAYLGVIVSALILLYEHYLVRKDF  262 (291)
T ss_pred             HHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            459999999999999999999999998877654444444443333433222   22333455566677778877776555


Q ss_pred             chhHHH
Q 048334          140 KASTLS  145 (181)
Q Consensus       140 k~si~s  145 (181)
                      ++....
T Consensus       263 ~~~~~~  268 (291)
T PRK12874        263 KKIDKA  268 (291)
T ss_pred             hHHHHH
Confidence            554333

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.94  E-value=1.1e-08  Score=89.17  Aligned_cols=87  Identities=15%  Similarity=0.245  Sum_probs=55.0

Q ss_pred             ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhc--cCC
Q 048334           61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTV--DLS  138 (181)
Q Consensus        61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~v--dl~  138 (181)
                      .+++|+|+|++.|++|+|+++|+|+..+++.... +.-.....+|.....  +.... .+-.+.+..+.+|...+  |.+
T Consensus       186 ~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~~y~-~~~~~~~~~l~~~~~~~~~~~~  261 (290)
T PRK12870        186 YAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFA-LTVGFLAILGVLLEL--HLPFW-IGLAIAAVLWARQYRRLRQANL  261 (290)
T ss_pred             HHhhhHhhHHHCCCcchhHHhccccHHHHHHHHH-HHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhcccCC
Confidence            4999999999999999999999999888777322 222233344444332  22222 23334455666777777  777


Q ss_pred             CchhH-HHHHHHHH
Q 048334          139 NKAST-LSFYMFIW  151 (181)
Q Consensus       139 sk~si-~sfY~fIW  151 (181)
                      |++.. +-|.+..|
T Consensus       262 ~~~~~~~~F~~n~~  275 (290)
T PRK12870        262 PPLAYGQLFLQNVW  275 (290)
T ss_pred             ChHHHHHHHHHhhH
Confidence            77544 44444444

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.94  E-value=5.3e-08  Score=86.12  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=51.7

Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCch
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKA  141 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~  141 (181)
                      +++|+|+||+.|++|+|+++|++++.++........... .+.+......  .... ++-..+...+.+|...+|.+|++
T Consensus       213 a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~-~l~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~  288 (314)
T PRK12878        213 AHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLM-GLAFWLAGVP--LLAL-LGLLAAAAHLAWQIARLDIDDPD  288 (314)
T ss_pred             HhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHH-HHHHHHhcCc--HHHH-HHHHHHHHHHHHHHHHcccCChH
Confidence            999999999999999999999999988775554444333 3333332221  2221 12222333466777787877776


Q ss_pred             hHHHHH
Q 048334          142 STLSFY  147 (181)
Q Consensus       142 si~sfY  147 (181)
                      +-..++
T Consensus       289 ~~~~~F  294 (314)
T PRK12878        289 QCLRLF  294 (314)
T ss_pred             HHHHHH
Confidence            543333

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=98.94  E-value=2.8e-08  Score=85.96  Aligned_cols=77  Identities=10%  Similarity=0.078  Sum_probs=48.4

Q ss_pred             ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334           61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK  140 (181)
Q Consensus        61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk  140 (181)
                      .+++|.|.|++.|+||+|+++|+|++.++......+.-......+.   ...+....++.-...+.++..+.+.++-+|+
T Consensus       179 l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~---~~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~  255 (279)
T PRK12869        179 LALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL---YYIGLIGLILVAILSAALMATSIRALLNPTK  255 (279)
T ss_pred             HHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHHhhCCCh
Confidence            3778999999999999999999999987765544332222222222   1233444444444455566666666554443

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=98.94  E-value=2.4e-08  Score=87.70  Aligned_cols=82  Identities=15%  Similarity=0.247  Sum_probs=61.2

Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCch
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKA  141 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~  141 (181)
                      |.+|+|+||+.|+||+|+++|+++..+++.....+.-...+..|....   +..+ -++-++.+..+.+|.+.+|.+|++
T Consensus       180 a~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~~~y-~~~~~~~~~~l~~q~~~~~~~~~~  255 (286)
T PRK12895        180 VIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---TLWY-LAALIIIYTLVIYQHLIIDPRNPI  255 (286)
T ss_pred             HhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---hHHH-HHHHHHHHHHHHHHHHHhcCCCHH
Confidence            999999999999999999999999988776555555555555554432   2222 356667778888999999999988


Q ss_pred             hH-HHHH
Q 048334          142 ST-LSFY  147 (181)
Q Consensus       142 si-~sfY  147 (181)
                      +. ..|+
T Consensus       256 ~~~~~~F  262 (286)
T PRK12895        256 NKRMSFF  262 (286)
T ss_pred             HHHHHHH
Confidence            77 4433

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=98.78  E-value=3.6e-07  Score=78.65  Aligned_cols=75  Identities=16%  Similarity=0.096  Sum_probs=47.1

Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLS  138 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~  138 (181)
                      ..+|.|.||+.|++|+|+++|+|++.+++.......-....+.+....  .+....+.+-.+.+..+.++.+.++.+
T Consensus       179 a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~  253 (280)
T TIGR01473       179 ALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKFYRDP  253 (280)
T ss_pred             HHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            468899999999999999999999887666554443333333333221  223444333344455566666666544

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=98.68  E-value=1.4e-06  Score=76.67  Aligned_cols=80  Identities=14%  Similarity=0.115  Sum_probs=53.2

Q ss_pred             hccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 048334           60 IQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN  139 (181)
Q Consensus        60 ~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s  139 (181)
                      .+|++|+|||++.|+||+|+++|++++.++......+..+..+  +...  ..++......-.+.+..+.+|.+..+-+|
T Consensus       194 ~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (297)
T PRK12871        194 LNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALYGFLAGFVLLAGANLYLWKEKS  269 (297)
T ss_pred             HHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3499999999999999999999999998765555444444333  2222  22333233333556667778888766666


Q ss_pred             chhH
Q 048334          140 KAST  143 (181)
Q Consensus       140 k~si  143 (181)
                      |++.
T Consensus       270 ~~~~  273 (297)
T PRK12871        270 QDAG  273 (297)
T ss_pred             HHHH
Confidence            6543

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=98.59  E-value=2.9e-06  Score=74.01  Aligned_cols=37  Identities=16%  Similarity=0.057  Sum_probs=28.8

Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHH
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAY   98 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y   98 (181)
                      .++|.|-||+.|+||+|+++|+|++.+++.....+.-
T Consensus       188 ~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~  224 (296)
T PRK04375        188 AIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLV  224 (296)
T ss_pred             HHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHH
Confidence            3677777899999999999999998876655444433

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=98.49  E-value=6.1e-06  Score=73.85  Aligned_cols=101  Identities=18%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH------------------------hcc
Q 048334            7 SPPLLLALIIWFLLGTAYSIQLPFLRWKGHPFLAPTSMMILMGLVYQLLFYIH------------------------IQD   62 (181)
Q Consensus         7 s~~l~~~~~~~l~lg~~YSv~~PPlRlKr~p~laa~~i~~v~g~i~~lg~f~h------------------------~~D   62 (181)
                      +|.+++-=.++.+.|+.|.  -+|.+..+.|+=.-.|-.+-.-+++..++|.+                        .+.
T Consensus       120 ~~~~l~lG~l~~~~g~~YT--gGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNN  197 (303)
T COG1575         120 DWLVLLLGLLCIAAGILYT--GGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANN  197 (303)
T ss_pred             hhHHHHHHHHHHHheeeec--cCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcc
Confidence            3443444458999999999  89999999997433332211111111222221                        248


Q ss_pred             CCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048334           63 VPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSS  109 (181)
Q Consensus        63 ipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~  109 (181)
                      +-|+|-|++.|-+|+|+++|++++..+=..++..+|+..++.-+...
T Consensus       198 irDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~  244 (303)
T COG1575         198 LRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGL  244 (303)
T ss_pred             cccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999988776544433

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=98.39  E-value=5.7e-06  Score=73.28  Aligned_cols=86  Identities=10%  Similarity=0.005  Sum_probs=55.4

Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCC--
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSN--  139 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~s--  139 (181)
                      ++.|.|+|++.|++|+|++.|++ +..+...+-.+.-+....+|.....  +..+. ++-++.+..+.+|.+.+|.++  
T Consensus       191 A~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l--~~~y~-~~~~~~~~~l~~~~~~~~~~~~~  266 (294)
T PRK12873        191 AMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQV--GFIFW-PFWLIASIGMQRDILKLFPEKQS  266 (294)
T ss_pred             HHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhCcCccc
Confidence            78899999999999999999974 4454444444444444455554433  22332 233444566778888888876  


Q ss_pred             -chhHHHHHHHHH
Q 048334          140 -KASTLSFYMFIW  151 (181)
Q Consensus       140 -k~si~sfY~fIW  151 (181)
                       ++-..-|.+..|
T Consensus       267 ~~~c~~~F~~n~~  279 (294)
T PRK12873        267 IKTIGNHFSNQVI  279 (294)
T ss_pred             HHHHHHHHHhccH
Confidence             334466666665

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=98.05  E-value=0.00025  Score=62.78  Aligned_cols=30  Identities=23%  Similarity=0.125  Sum_probs=26.1

Q ss_pred             cCCChhhhHHcCCccchhhhcHHHHHHHHH
Q 048334           62 DVPDVDGDREFGIQTLSVIIGKEKVFWLGV   91 (181)
Q Consensus        62 DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~   91 (181)
                      ++.|.|.|++.|++|+|++.|+|++.+...
T Consensus       191 ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~  220 (306)
T PRK13362        191 AIFRFNDYAAAGIPVLPVARGIAKTKLHIV  220 (306)
T ss_pred             HHHhHhhHHHCCCeeeceecChHHHHHHHH
Confidence            678888889999999999999999887443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=97.85  E-value=8.6e-05  Score=66.43  Aligned_cols=40  Identities=15%  Similarity=0.062  Sum_probs=33.6

Q ss_pred             ccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHH
Q 048334           61 QDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAI  102 (181)
Q Consensus        61 ~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i  102 (181)
                      +|+|| |||++. .+|+|+++|+|++..++..+..+..+...
T Consensus       195 KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~  234 (299)
T PRK13592        195 RKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTNF  234 (299)
T ss_pred             HhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHhh
Confidence            49999 899965 99999999999999999988766655433

>PLN02776 prenyltransferase

Probab=96.63  E-value=0.22  Score=45.45  Aligned_cols=102  Identities=13%  Similarity=-0.020  Sum_probs=51.2

Q ss_pred             CCChhhhHHcCCccchhhh--cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Q 048334           63 VPDVDGDREFGIQTLSVII--GKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNK  140 (181)
Q Consensus        63 ipDieGDr~~Gi~Tlpv~l--G~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk  140 (181)
                      ..|-|-|++-|++.+|+.-  |++....+......+.-+..+..+.-..   ...+.+.+-++-+..+++.-+.+.-+|+
T Consensus       173 ~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~---~~~~~~~a~~l~~~~l~~~~~~~~~~~~  249 (341)
T PLN02776        173 YMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVT---SSPFALEAALLTAYLAASAASFYREPTN  249 (341)
T ss_pred             HHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            3444568899999999976  4555555554443333222222222111   2344445555555556666666533332


Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhc
Q 048334          141 ASTLSFYMFIWKASDCYTTLNTSL-FILCVEKVMK  174 (181)
Q Consensus       141 ~si~sfY~fIWkLFy~e~~~~~~~-~~~~~~~~~~  174 (181)
                      +       ...|+|+.-..-...+ ..++++++-+
T Consensus       250 ~-------~ar~~F~~Sl~yL~~l~~~~~~~~~~~  277 (341)
T PLN02776        250 A-------NARKMFHGSLLYLPAFMALLLLHRVPN  277 (341)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            1       2355555544444333 3556666543

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=94.42  E-value=0.16  Score=45.43  Aligned_cols=53  Identities=28%  Similarity=0.463  Sum_probs=47.3

Q ss_pred             HHhccCCChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048334           58 IHIQDVPDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSF  110 (181)
Q Consensus        58 ~h~~DipDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~  110 (181)
                      +|.+.-.|.|.||+.||-|+++.+|+.....+-..++.++|....+.+.-.+-
T Consensus       246 lhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si  298 (359)
T KOG4581|consen  246 LHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSI  298 (359)
T ss_pred             hccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568899999999999999999999999999999999999999988886654

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=91.51  E-value=0.39  Score=43.70  Aligned_cols=85  Identities=15%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             CChhhhHHcCCccchhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCchhH
Q 048334           64 PDVDGDREFGIQTLSVIIGKEKVFWLGVYMMLTAYGAAILVGASSSFLLSKLVTIISHSILAFILWRRAQTVDLSNKAST  143 (181)
Q Consensus        64 pDieGDr~~Gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ll~~~L~~r~~~vdl~sk~si  143 (181)
                      .|-+-|-+-|+++.+.++|.+.=.|++. +-..--..-...|+.+.+.| +-++.  -...+..|-.|-..||+.||+..
T Consensus       247 QDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~q~~-pyy~~--lg~~~~~L~~~i~~vdiDnp~dC  322 (353)
T KOG1381|consen  247 QDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASDQTW-PYYAA--LGAVAARLGSQIYKVDIDNPSDC  322 (353)
T ss_pred             ccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccCCCc-hHHHH--HHHHHHHHHhheeeeecCChHHH
Confidence            5677799999999999999886656543 22222222334577777766 44433  55667888899999999998865


Q ss_pred             HHHH-HHHHH
Q 048334          144 LSFY-MFIWK  152 (181)
Q Consensus       144 ~sfY-~fIWk  152 (181)
                      ..++ ..+|.
T Consensus       323 ~k~f~sN~nt  332 (353)
T KOG1381|consen  323 WKKFKSNSNT  332 (353)
T ss_pred             HHHHHhcCcc
Confidence            4443 33443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00