Citrus Sinensis ID: 048342


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MVGLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQQDTCNDDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNSIPLTNGGNTQEKFQASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFALVMKLKHFLLSKWFAHSYQGLR
ccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHEEEEccEEEEEEEEHHHHHHHHHHHHHHHHHHHccEEEEEcccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHcccccccccEHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MVGLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEEcfdnfksngggtqqdtcnddewrpilkqvhpfWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSllsiygchrchkisrgsiivhhngvaedqrnsipltnggntqeKFQASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGdtalnsmqfpwfrISYFILWTSIFVIFQWILHASVsiwwpypflelsspfapLWYLLVGLAHFPCYCIFALVMKLKHFLLSKWFAHSYQGLR
MVGLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQQDTCNDDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNSIPLTNGGNTQEKFQASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFALVMKLKHFLLSKWFahsyqglr
MVGLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQQDTCNDDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNSIPLTNGGNTQEKFQASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFALVMKLKHFLLSKWFAHSYQGLR
**GLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQQDTCNDDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAE***************EKFQASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFALVMKLKHFLLSKWFAHSY****
********TTALSYWFNWRFFLCAIWILFCFGMSSFFIWK*********************DEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSII***************************ASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFALVMKLKHFLLSKWFAHSYQG**
MVGLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQQDTCNDDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNSIPLTNGGNTQEKFQASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFALVMKLKHFLLSKWFAHSYQGLR
*VGLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFD**********QDTCNDDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKIS********************************ASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFALVMKLKHFLLSKWFAHSY****
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVGLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQQDTCNDDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNSIPLTNGGNTQEKFQASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFALVMKLKHFLLSKWFAHSYQGLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
225452406329 PREDICTED: uncharacterized protein LOC10 0.971 0.942 0.568 1e-100
225457003326 PREDICTED: uncharacterized protein LOC10 0.978 0.957 0.526 1e-95
224060113330 predicted protein [Populus trichocarpa] 0.962 0.930 0.531 1e-91
356507258348 PREDICTED: uncharacterized protein LOC10 0.990 0.908 0.511 2e-91
449469701371 PREDICTED: uncharacterized protein LOC10 0.990 0.851 0.504 1e-90
224133574347 predicted protein [Populus trichocarpa] 0.990 0.910 0.474 2e-89
363807698348 uncharacterized protein LOC100804037 [Gl 0.990 0.908 0.505 3e-89
356558861332 PREDICTED: uncharacterized protein LOC10 0.971 0.933 0.501 7e-87
357135474331 PREDICTED: uncharacterized protein LOC10 0.984 0.948 0.472 1e-86
297793887347 hypothetical protein ARALYDRAFT_919578 [ 0.981 0.902 0.504 9e-86
>gi|225452406|ref|XP_002273842.1| PREDICTED: uncharacterized protein LOC100247330 [Vitis vinifera] gi|296087638|emb|CBI34894.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/338 (56%), Positives = 240/338 (71%), Gaps = 28/338 (8%)

Query: 1   MVGLIAADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFDNFKSNGGGTQQDTCN 60
           M+ +  ADTT LSYW NWR  LC IW+L    +++F IWK E   + KS    T+QD   
Sbjct: 1   MLLVETADTTTLSYWMNWRVLLCTIWVLTPMIVAAFIIWKYEGPKHPKSEREETEQDIDR 60

Query: 61  ----DDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTI 116
               +  WRP L+++HP WLLAFR+ +FCFLL TLI +V+I+GG +FFYYTQWTFTL+TI
Sbjct: 61  FFSVEKAWRPCLEEIHPCWLLAFRIISFCFLLATLIGEVVIHGGGMFFYYTQWTFTLVTI 120

Query: 117 YFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNS-IPLTNG------------GNT 163
           YFGFGSLLSIYGC++  K+S         GV + ++ S +PL  G            G+ 
Sbjct: 121 YFGFGSLLSIYGCYQYDKMS---------GVTDSEQGSYMPLLYGDGINKSRMRKTLGSP 171

Query: 164 QEK--FQASAVIRYLFQVLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAIN 221
           +E    Q  A+  +LFQV+FQ  AGAV+LTD +YW +IFPFLT+++Y ++ MTVNMH +N
Sbjct: 172 EENSLLQTEAIWSHLFQVIFQINAGAVMLTDCIYWFIIFPFLTIKDYNMSFMTVNMHTLN 231

Query: 222 AFFLLGDTALNSMQFPWFRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLW 281
           A  LL DTALN + FPWFRI+YF+LWT IFVIFQWI+HA VSIWWPYPFL+LSSPFAPLW
Sbjct: 232 AVLLLCDTALNCLPFPWFRIAYFVLWTGIFVIFQWIIHACVSIWWPYPFLDLSSPFAPLW 291

Query: 282 YLLVGLAHFPCYCIFALVMKLKHFLLSKWFAHSYQGLR 319
           YL V L H PCY IFALV+++KH LLSKWF  SYQ LR
Sbjct: 292 YLAVALMHIPCYAIFALVVEIKHNLLSKWFPQSYQCLR 329




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457003|ref|XP_002282364.1| PREDICTED: uncharacterized protein LOC100245004 [Vitis vinifera] gi|297733765|emb|CBI15012.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224060113|ref|XP_002300043.1| predicted protein [Populus trichocarpa] gi|222847301|gb|EEE84848.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507258|ref|XP_003522386.1| PREDICTED: uncharacterized protein LOC100799543 [Glycine max] Back     alignment and taxonomy information
>gi|449469701|ref|XP_004152557.1| PREDICTED: uncharacterized protein LOC101203045 [Cucumis sativus] gi|449487859|ref|XP_004157836.1| PREDICTED: uncharacterized protein LOC101223623 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224133574|ref|XP_002321608.1| predicted protein [Populus trichocarpa] gi|222868604|gb|EEF05735.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807698|ref|NP_001242678.1| uncharacterized protein LOC100804037 [Glycine max] gi|255636033|gb|ACU18361.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356558861|ref|XP_003547721.1| PREDICTED: uncharacterized protein LOC100815819 [Glycine max] Back     alignment and taxonomy information
>gi|357135474|ref|XP_003569334.1| PREDICTED: uncharacterized protein LOC100846204 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|297793887|ref|XP_002864828.1| hypothetical protein ARALYDRAFT_919578 [Arabidopsis lyrata subsp. lyrata] gi|297310663|gb|EFH41087.1| hypothetical protein ARALYDRAFT_919578 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
TAIR|locus:2166290347 AT5G62960 "AT5G62960" [Arabido 0.981 0.902 0.504 2.6e-86
TAIR|locus:2019928320 AT1G10660 "AT1G10660" [Arabido 0.949 0.946 0.490 6.8e-79
TAIR|locus:2089174315 AT3G27770 "AT3G27770" [Arabido 0.934 0.946 0.485 1.4e-78
TAIR|locus:505006323300 AT2G47115 "AT2G47115" [Arabido 0.714 0.76 0.431 1.3e-52
TAIR|locus:504956261358 AT1G70505 "AT1G70505" [Arabido 0.727 0.648 0.412 1.2e-44
UNIPROTKB|G4N732274 MGG_03627 "Uncharacterized pro 0.448 0.521 0.243 5.1e-06
TAIR|locus:2166290 AT5G62960 "AT5G62960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 162/321 (50%), Positives = 216/321 (67%)

Query:     7 ADTTALSYWFNWRFFLCAIWILFCFGMSSFFIWKEECFDNFKSN-G---GGTQQDTCN-- 60
             A+TT  SYWFNWR  +C IW+     +++F I+K E F   +S+ G   GG ++ + N  
Sbjct:    27 ANTTESSYWFNWRVMICCIWMAIATVITAFLIFKYEGFRRKRSDVGEVDGGEKEWSGNVY 86

Query:    61 -DDEWRPILKQVHPFWLLAFRVTAFCFLLTTLIVKVLINGGTIFFYYTQWTFTLLTIYFG 119
              D+ WRP L+ +HP WLLAFRV AF  LL  LIV  L++G TIFFYYTQWTF L+T+YFG
Sbjct:    87 EDETWRPCLRNIHPAWLLAFRVVAFFVLLVMLIVIGLVDGPTIFFYYTQWTFGLITLYFG 146

Query:   120 FGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNSIPLTNG-GNTQEKFQASAVIRYLFQ 178
              GSLLS++GC++ +K + G  +     +  ++  S    N    +Q     +    Y+FQ
Sbjct:   147 LGSLLSLHGCYQYNKRAAGDRVDSIEAIDSERARSKGADNTIQQSQYSSNPAGFWGYVFQ 206

Query:   179 VLFQTIAGAVVLTDLVYWGVIFPFLTLEEYKLNLMTVNMHAINAFFLLGDTALNSMQFPW 238
             ++FQ  AGAV+LTD V+W +I PFL + +Y LN++ +NMH++NA FLLGD ALNS+ FP 
Sbjct:   207 IIFQMNAGAVLLTDCVFWFIIVPFLEIHDYSLNVLVINMHSLNAIFLLGDAALNSLSFPC 266

Query:   239 FRISYFILWTSIFVIFQWILHASVSIWWPYPFLELSSPFAPLWYLLVGLAHFPCYCIFAL 298
             FRI+YF  WT  +VIFQW LH+ V IWWPYPFL+LSS +APLWY  V + H PCY  FAL
Sbjct:   267 FRIAYFFFWTIAYVIFQWALHSLVHIWWPYPFLDLSSHYAPLWYFSVAVMHLPCYGAFAL 326

Query:   299 VMKLKHFLLSKWFAHSYQGLR 319
             ++KLKH LL +WF  SYQ  R
Sbjct:   327 LVKLKHRLLQRWFPESYQSPR 347




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2019928 AT1G10660 "AT1G10660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089174 AT3G27770 "AT3G27770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006323 AT2G47115 "AT2G47115" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956261 AT1G70505 "AT1G70505" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N732 MGG_03627 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00020705001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (329 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
PF04750201 Far-17a_AIG1: FAR-17a/AIG1-like protein; InterPro: 99.55
KOG3989224 consensus Beta-2-glycoprotein I [Extracellular str 98.52
>PF04750 Far-17a_AIG1: FAR-17a/AIG1-like protein; InterPro: IPR006838 This entry includes the hamster androgen-induced FAR-17a protein (Q60534 from SWISSPROT) [] Back     alignment and domain information
Probab=99.55  E-value=5.9e-14  Score=126.13  Aligned_cols=156  Identities=23%  Similarity=0.387  Sum_probs=113.3

Q ss_pred             cCCEEEEEehhhhHHHHHHHHHHHHHHHHhhhhhhcccccCccccccCCcccccCccccCCCCCCchhhhhhhhhhHHH-
Q 048342           98 NGGTIFFYYTQWTFTLLTIYFGFGSLLSIYGCHRCHKISRGSIIVHHNGVAEDQRNSIPLTNGGNTQEKFQASAVIRYL-  176 (319)
Q Consensus        98 ~g~~~F~YyT~Wtf~LltiYF~las~~S~~g~~~y~~~~~~~~v~~~~~~d~e~~~~~~~~~~~~~~~kr~~ag~w~~~-  176 (319)
                      .-|+.|.|+|+|+..+.++||+++.+...       ++  +                            ++    .... 
T Consensus        30 ~~gg~~~fLT~~~~~~~~~~~~~~~~~d~-------~~--~----------------------------~~----l~~~~   68 (201)
T PF04750_consen   30 SYGGRFKFLTNWSLVLQTIYFILALLCDL-------FS--S----------------------------RK----LRKLR   68 (201)
T ss_pred             hhcCcceehhHHHHHHHHHHHHHHHHHHh-------cc--c----------------------------HH----HHHHH
Confidence            35678899999999999999988866554       10  0                            00    0112 


Q ss_pred             HHHHHHHhhhhHhhhheeEEEEee--ccccccc-c---ccccccchhhhHHHHHHHHHHhhcCC--CCchhHHHHHHHHH
Q 048342          177 FQVLFQTIAGAVVLTDLVYWGVIF--PFLTLEE-Y---KLNLMTVNMHAINAFFLLGDTALNSM--QFPWFRISYFILWT  248 (319)
Q Consensus       177 ~qilfqt~a~a~~LtdiVyW~iL~--p~l~~~~-~---~lnf~~i~~H~lNavflL~D~~Ln~~--P~p~~h~~Y~vl~~  248 (319)
                      -+.+++++...+++|+++||++..  |-+-.|+ .   -...+|.++|++|++++++|..+.+.  |.+..++......+
T Consensus        69 ~~~~~~~~~pl~~~V~~~yW~l~~~dp~lv~p~~~~~~ip~wln~~~H~~~~i~llid~~~~~~~~~~~~~~~~~~~~~~  148 (201)
T PF04750_consen   69 DWLFYSLAFPLEFIVTVVYWSLYLIDPELVFPKWLDNVIPLWLNHSMHTLPLIFLLIDLFLFKHRYPSRKKALLISFAFG  148 (201)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHhCCHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence            466788999999999999999642  2211121 1   12358999999999999999999885  55666888888899


Q ss_pred             HHHHHHHHHHHhhccCccccccccCCCCCc-hhhHHHHHHHHHHHHHH
Q 048342          249 SIFVIFQWILHASVSIWWPYPFLELSSPFA-PLWYLLVGLAHFPCYCI  295 (319)
Q Consensus       249 ~~YviF~~I~ha~g~~~w~YpFLD~~~p~a-pl~y~~v~~~hi~~y~~  295 (319)
                      .+|.+.....+...| .|||||||..++.. .+.+.+..++...+|.+
T Consensus       149 ~~Y~~~~~~~~~~~g-~wpYPfl~~~~~~~~~~~~~~~~~~~~~~~~~  195 (201)
T PF04750_consen  149 LAYIIWIEYIYYVNG-FWPYPFLDVLSPPGRVVFFAVSFLLAFLLYLL  195 (201)
T ss_pred             HHHHhheeEEEeCCC-eeCCCCcCCCCcchhheehHHHHHHHHHHHHH
Confidence            999988777777756 89999999877654 55566666666555544



The function of these proteins is unknown but it is thought to have a central role in the fusion process during myogenesis, within the somatic mesoderm. This entry also includes homologous regions from a number of other metazoan proteins.; GO: 0016021 integral to membrane

>KOG3989 consensus Beta-2-glycoprotein I [Extracellular structures] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00